dwi_366

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GTTGCGAATTTGAATGCCTTGATCCGCCCGGCGAGGATAAGCTATATCAGGTAATATTAATGAGTAAAAAATAAGTAAGTCGTCTCGCCGACTTCTGTATACCATGCACCGCCTGGAATATTTTCGTGGCGAAAATTTGAAATAAACTTGATCGCCGTAGCCACTACACACGAGTCCGAGAGTTGGTGACTCTCTCTGATAGTCCAAGATCTAGGTGCTCAAACGGGAATAGACGATAGATGGATGGAGGG ************************************************....(((((..(((....................(((((((((..(((((...))))).((((..(((....)))..))))...............((((.(((..((((...))))...)))...)))))))))))))..)))..)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M020 head	M045 female body	V118 embryo	V117 male body
.......................CCGCCCGGCGAGGATAAGCTA...............................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
......................................................................................................................................................................................................ATAGTCCAAGATCTAGGTGCTC...............................	22	0	1	1.00	1	1	0	0	0
...........................................................ATGGGTAAAAAATAAGTAAGGCGA........................................................................................................................................................................	24	3	2	0.50	1	0	0	1	0
................................GAGGAAAAGCTATGTCAGG........................................................................................................................................................................................................	19	2	3	0.33	1	0	0	1	0
....................GATCCCCCCTGCGAGGATA....................................................................................................................................................................................................................	19	2	3	0.33	1	0	1	0	0
....................GATCCCCCCTGCGAGGATAG...................................................................................................................................................................................................................	20	3	4	0.25	1	0	1	0	0
...................................................................................................................GAATATTTCCGTGACGAA......................................................................................................................	18	2	10	0.20	2	0	2	0	0
....................GATCGCCCCTGCGAGGATA....................................................................................................................................................................................................................	19	3	7	0.14	1	0	1	0	0
....................GATCCTCCCTGCGAGGGTA....................................................................................................................................................................................................................	19	3	10	0.10	1	0	1	0	0
..........................................................................................................................................GAATTACTCTTGATCGCCG..............................................................................................	19	3	11	0.09	1	1	0	0	0
...................................................................................................................GAATATTTCCGTGACGAAGA....................................................................................................................	20	3	15	0.07	1	0	1	0	0
................................................................................................................CTGGAATATCTGCGCGGCG........................................................................................................................	19	3	15	0.07	1	0	0	0	1
....................................................................................................................AATATTTCCGTGACGAAGA....................................................................................................................	19	3	20	0.05	1	0	0	0	1

CAACGCTTAAACTTACGGAACTAGGCGGGCCGCTCCTATTCGATATAGTCCATTATAATTACTCATTTTTTATTCATTCAGCAGAGCGGCTGAAGACATATGGTACGTGGCGGACCTTATAAAAGCACCGCTTTTAAACTTTATTTGAACTAGCGGCATCGGTGATGTGTGCTCAGGCTCTCAACCACTGAGAGAGACTATCAGGTTCTAGATCCACGAGTTTGCCCTTATCTGCTATCTACCTACCTCCC ************************************************....(((((..(((....................(((((((((..(((((...))))).((((..(((....)))..))))...............((((.(((..((((...))))...)))...)))))))))))))..)))..)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V119 head	M045 female body	M020 head	V118 embryo
............................ACCGCTCCCTTTCGATATAGTCCA.......................................................................................................................................................................................................	24	3	2	1.00	2	2	0	0	0
....................................................................................................TGGTACGTGGCGGACAGTA....................................................................................................................................	19	2	2	0.50	1	0	1	0	0
............................ACCGCTCCCTTTCGATATAGTC.........................................................................................................................................................................................................	22	3	2	0.50	1	0	0	1	0
.............................CCGCTCCCTTTCGATATAG...........................................................................................................................................................................................................	19	2	8	0.13	1	0	0	0	1
...................................................................................................ACGGTAGGTGGCGGGCCTT.....................................................................................................................................	19	3	11	0.09	1	0	1	0	0
....................................................................................................................................................................................................ACCATCAGGTTGTAGCTCC....................................	19	3	13	0.08	1	0	0	0	1
............................................................................................................................GCACCGCTTTTAAACTTTATTTGAACT....................................................................................................	27	0	16	0.06	1	0	1	0	0
....................................................................................................CGGTAGGTGGCGGGCCTT.....................................................................................................................................	18	3	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004401:771435-771685 -	dwi_366	GTTGCG-----------------AATT--TGAATGCCTTGATCCGCCCGGCGAGGATAAGCTATATCAGGTAATATT----------------------------------AATGAGTAAAAAATAAG-----------TAAGTCGTC-TC-----G----------------CCGACT----------------------------------------TCTGTATACCATGC-----------------------ACCGCC--T-GGAA------------TATTTTCGTGGCGA-------------------AAATTTGAAATAAACTTGATCGC-----------------------------------------------CGTAGCCACTACACACGAGTC------CGAG-------------AGTTGGT--------------------GA--CTCTCTCTGATAGT--CC-AAGATCTAGGTGC----TCAAACGGG--AATAGACG-ATAGATGGATGG--AGGG
droVir3	scaffold_12954:788480-788691 +		CAATGATAAGCGAC-------------------------------------------------------------------------------------------------------AA----------------------------------------------------------AATAAAATAAATAAATAAAA-------TGAAATTTAGAGAATTAT-----A-------------------TATATATTC------TTAT----------------TACCAGAAATGCGA-------------------TTATCAGAAAAAAACTCGATCTG-----------------------------------------------CGCGGGCACTAGG--AGCACCTACATCTAAA-------------ATTTCAA--------------------GTCTCTAGCCCTTATAGGTTTT-GTGATCCTTGCGT----TCATACATACGGACAGACGGACAGACAGACGG--ACAC
droMoj3	scaffold_1960:17660-17885 +		ATATACAACGCA-----------AATT--TGAAGTCTC---------------------------------------------------------------CAGGTCTAAAAGTGTTGA-AATTAGGC-TAA--AAAACAAAGTCGAT-TT-----T----------------TCGATT----------------------------------------ATTC-------------------------------------------------------------TCGATAAAACAGTTATCGGATGAGTTATCGAAAAAATAAAGCAAACTCGTGCTG-----------------------------------------------CCTATGGTATACA--CGAGTATGCATGCCAA-------------ATTTCAG--------------------CTCTCTAGCTCTTATATCTTCT-GAGATCCTTTTGC----TCATACGGA----CGGA------------CGG--ACGG
droGri2	scaffold_15110:300288-300490 -		ATATAA----------------------------------------------------------------------------------------------------------ATAAAAAAAAAACAAG-----------TAAGACAAT-TTGTAGTTGAGTGATCTCGACTAAGATAT-----------------------------ACCCTACA-----------------------------------------GCCAGC--------------------------------------------------------TGTTAAATATATTC----------------------------------TGGTTTGATTGCCGATCTGACCGAGGCATACG--ATAACTTATATTCCAA-------------ATTTTA---------------------GTCTCTAGCCCTTATAGTCTCT-AAGATCCATATAT----TTATAGCGA----TAAACAGA----CGG--AA--TTGG
dp5	3:1175984-1176143 -		AATCGT-----------------CTC----------------------------------------------------------------------------------------------------------------------------------T----------------GAGATT----------------------------------------TCTGGATGCCC---------------------------------------------------------------CAG-------------------AGTTTTGAAATATTTTTGTAGCA-----------------------------------------------GTGACATATCACA--GAAGTCTGGATCCAAA-------------ACATCGT--------------------TGCTCTAGCTCTTATAGTCTTT-GAGCATTAGGCGC----TGAAGGGGACGGACAGACGGACAGACGGACGG--ACGG
droPer2	scaffold_6739:987-1250 +		GCAACA-----------------GATT--TTCGTCCTTTGTGGGGGCGGAAG-------------------------GGGGTGGGGCGAAATTCTGAAATATAGGTTTTATAGTGAGAAAAATTTGGT-TACTCTAGACTTAATTGTC-TC-----T----------------GAGATT----------------------------------------TGTGGATACCA-------------------CAGATTT------TCGCCCTTTGGGAGGGCAGAAGTGGGCGGGGCAA-------------------AGTTTTGAAATATTTTTGTAGCA-----------------------------------------------GTGACATATCACA--GAAGTCTGGATCCAAA-------------ATATCGT--------------------TGCTATAACT--------------------AGCTGT----ATATA-GGA----CGGACAGA--------CAGACAGGG
droAna3	scaffold_13250:1637612-1637738 +		CAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAA-------------------AAATTTTAAACAAACTTAACCTG-----------------------------------------------CCCATCATTCACA--GGAGTTTTTGATCAAA-------------ATTTTAT--------------------AGCACTATCGCTAATAGACTCGGAAGATCCACATGT----TCATACGGA----TAGATAT--------ATAG--ACGG
droBip1	scf7180000391880:29917-30043 +		TTTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGGAA-------------------ATTTTTGAAACAAACTTGAACTG-----------------------------------------------TGTGGGCATTGTA--GAAGTCTG----CCAA-------------ATCCTAT--------------------ATCTCTATCTCTTATAGTCTAT-GATAAACG---GA----TCATACGGA----TAAACGGA----CGGACGG--ACAG
droKik1	scf7180000302621:35014-35080 +		GCTGCG-----------------AGTT--CGAGTGCCTGGATCCACCCGGCGAGGACAAGCTGTACCAGGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTCC-AAAA-----------------------------------------------AATA
droFic1	scf7180000453108:28034-28135 +		CTGCAA-----------------TAACTACACAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCC------------------------------------------------GAAAGTTTCAGTACGATAGCTTCAAAA----CT-GAGAGACTAGTTT----ACATAGAAACAGACAGACGGACAGACGGACCG--ACGG
droEle1	scf7180000490419:11488-11636 -		GCCGAC-----------------TGCC--------------------------------------------------------------------------------------------------------------------------------------------------GATATA--------------------------------TCTA---A-------CATG---TCTTAGAGTGACGGTACATACTT------TCACTATTTG--------------------TCGG-------------------CGTTTTGAAATAAACTTGCTCTT---------------------------------------------------------------------------------------------GCCAA--------------------ATTTCTAGAATGTATAGTTTCC-GAGATCTCGACGT----TCATACAGA----CGGACAGA--------CAG--ACGG
droRho1	scf7180000767193:1837-2032 +		TAAGGC-----------------G--------------------------------------------------------------------------------------------------------------------------CA-TT-----C----------------TCAAAA----------------------------------------TTTGTATACCACGT-----------------------ATCGCC--C----------------TTCTTATCGTATACA-------------------AAATC-GAAA-AAGCTTTATTGTTATACCCTTGCAGAGGGTAATATAATTTTGG------------------------------------------TCAGA-------------AGTTTGTAACGCAGT-GAAAGTTTCAGTTCGCTAGCTTTTAAA----CT-GAGCTCGCAAACGGTGTTGAAACAGA----CGGACAGA--------CGG--GCGG
droBia1	scf7180000302377:1830863-1831065 -		TATTA-----------------------------------------------------------------------------------------------------------ATGAGACAAACACAAT-----------TAAGT------------------------------------------------------------TAAAATTTTGA---T-------CCTA---TCGTAATAACGCACTACAGACTT------TCGCGGACTGT------------GGGCGTGGCAC-----------------AAACACGTGAAACAAACTTGCGCTG-----------------------------------------------CGCAGGAAGCCCA--GGAATCTGCATGCCAA-------------GTCTGCC--------------------TGTCCTAGCTCTTATAGTTTCC-GAAATCTCAGCGT----TCATACGGA----CAGA------------CAG--ACGG
droTak1	scf7180000413757:13319-13537 -		CTTGTA-----------------AACC--TGGGAAACTGTTCGCCTTTGGAGGAAGCCAAT-----C----------AGGAATGAATAAATATA--------------------------------------------------------------------------------------------------------------TAAAATTTTGA---T-------TTCACAT-----------------------AGCG--TTA----------------GCCCCCTCGTGGCGC-------------------GTGGCTGAAATAAACTTGCGCTG-----------------------------------------------CGTTGGAAGCCGA--AGAATGTGTGTAAAAA-------------AACTGAA--------------------CCTTCTAGCTTTTGTAGTTTCC-AAGATCTCAGCGG----TTATACAGA----CAGACGGA--------CAG--ACGG
droEug1	scf7180000408165:21357-21609 -		AGAGTG-----------------GGCG----------TGGCTTGATCCGAAGAAAACAGTTCACATTGGGAG-CATT----------------------------------AAAAAAAC------------------------------------------------------------------CTATAAATATAAATAAATATAAACCTTCGA---T-------TTCA---TCGAATT---------TATTTTT------TCGCGATTTGTGGGCGTTGGAGTAGGCGTGGCAG-------------------GATGCTGTAATAAACATGCGCTG-----------------------------------------------TGTAGGGACCTCA--AGAATCTTCGTGGTTA-------------ATCTCAA--------------------CTTTGCATCT--------------GCATCTCAGCGT----TCATACGGA----CAGACGGACAGACGGACAG--CCGG
dm3	chrX:12670843-12670951 -		GCTGTG-----------------AGTT--CGAGTGCTTGGATCCGCCCGGCGAGGACAAACTGTACCAGGTA-CGTG----------------------------------GATGCGTGAAATATGAA-----------AATA----T-TT-----G----------------CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTATACGCGAT-------------ATTCC------------------------------------------------------------------------------------------------ACCT
droSim2	x:18038311-18038499 -		TTAATA-----------------A--------------------------------------------------------------------------------------------CAAAACAATGGGCAATGC----TAAAGTCGTCTTC-----C----------------CCGACT----------------------------------------ATCAGATACT----------------------------------------------------------------CAG-------------------CAAGTGGAAATGCATTC--------------------------------------------------------GCGGAATTTA--ATAATTTTTATGGCATATCATAGATTTTGGGGATGATTTTGA-----------ATGCCTTCTAGCTTTTATAGTTCTT-GAGATCTCGACGT----TAATGCGGA----AAGACGGA--------CAG--ACGG
droSec2	scaffold_1:6565975-6566109 +		ATAATT-----------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTA-------------------AAAGTTAAAACAAACTTGCGCTG-----------------------------------------------CGTTTATGCATCC--AGAATCTGTATGCTGA-------------ATCCCAA--------------------CCCTCTAGCTTTTATAGCTTCT-GAGATCTCGACGT----TCATACGGA----CAGACGGTC------ATGA--CCAG
droYak3	v2_chr2h_random_004:444006-444167 +		GTCTGGAATGCGATCGAATCGAAAAATTACACATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--GTGACGTGAC---CGG------TCA-----------------------------------------------------------------------------------------------------CGG----------------------T----CT--GAAGG---------------------------TTGCTTCGGACCCTTAAGCTCTTGCTTTCTAGCTTTTATAGTTCCT-GAGATCTCGACGT----TCATACGGATAAACAGACGGACAGACGGACGGACATGG
droEre2	scaffold_4929:25864979-25865119 -		GGGCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCGTGGCCA-------------------AATTTGGAAACAAATTTCCGCTG-----------------------------------------------CGTCTACGTCTCT--GAAAGCTGCATGCTTA-------------ATCT--G--------------------CATTCTAGCTTTTGTAGTTCCT-GAGCTCGAGGCGT----TCATACGGA----CAGACAAACAGACGGATGG--ACAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

GTTGCG-----------------AATT--TGAATGCCTTGATCCGCCCGGCGAGGATAAGCTATATCAGGTAATATT----------------------------------AATGAGTAAAAAATAAG-----------TAAGTCGTC-TC-----G----------------CCGACT----------------------------------------TCTGTATACCATGC-----------------------ACCGCC--T-GGAA------------TATTTTCGTGGCGA-------------------AAATTTGAAATAAACTTGATCGC-----------------------------------------------CGTAGCCACTACACACGAGTC------CGAG-------------AGTTGGT--------------------GA--CTCTCTCTGATAGT--CC-AAGATCTAGGTGC----TCAAACGGG--AATAGACG-ATAGATGGATGG--AGGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................CCGCCCGGCGAGGATAAGCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGT--CC-AAGATCTAGGTGC----TC....................................	22	1	1.00	1	1	0	0	0	0

droVir3

CAATGATAAGCGAC-------------------------------------------------------------------------------------------------------AA----------------------------------------------------------AATAAAATAAATAAATAAAA-------TGAAATTTAGAGAATTAT-----A-------------------TATATATTC------TTAT----------------TACCAGAAATGCGA-------------------TTATCAGAAAAAAACTCGATCTG-----------------------------------------------CGCGGGCACTAGG--AGCACCTACATCTAAA-------------ATTTCAA--------------------GTCTCTAGCCCTTATAGGTTTT-GTGATCCTTGCGT----TCATACATACGGACAGACGGACAGACAGACGG--ACAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAA--------------------GTCTCTAGCCCTTATAGGT...........................................................	24	5	2.40	12	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	1	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAA--------------------GTCTCTAGCCCTTATAGGTTT.........................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................AT----------------TACCAGAAATGCGA-------------------TTATCAG....................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TCATACATACGGACAGACGGACAG..............	25	20	0.55	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAA--------------------GTCTCTAGCCCTTATAGGTT..........................................................	25	5	0.40	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TCATACATACGGACAGACGGAC................	23	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-------------ATTTCAA--------------------GTCTCTAGCCCTTA................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGCGT----TCATACATACGGAC........................	23	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGT----TCATACATACGGACA.......................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGT----TCATACATACGGACAGACG...................	25	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TCATACATACGGACAGACGGACAGA.............	26	20	0.25	5	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAA--------------------GTCTCTAGCCCTTATAG.............................................................	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATACATACGGACAGACGGACAGAC............	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGT----TCATACATACGGACAGACGGAC................	28	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TAGG--AGCACCTACATCTAAA-------------ATTTCA...................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGCGT----TCATACATACGGACA.......................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TCATACATACGGACAGACGG..................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TCATACATACGGACAGACGGACA...............	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATACGGACAGACGGACA...............	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TACATCTAAA-------------ATTTCAA--------------------GTCTCTAGC.....................................................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGACAGACAGACGG--ACAC	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GATAAGCGAC-------------------------------------------------------------------------------------------------------AA----------------------------------------------------------AATAAAATA............................................................................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATAGGTTTT-GTGATCCTTGCGT----TC....................................	27	16	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCGT----TCATACATACGGACA.......................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGCGT----TCATACATACGGACAG......................	24	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGACAGACGGACAGACAGAC........	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCGT----TCATACATACGGACAGAC....................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----TCATACATACGGACAGAC....................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGGTTTT-GTGATCCTTGCGT----TCA...................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGACGGACAGACAGA.........	19	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATACGGACAGACGGACAGAC............	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGT----TCATACATACGGACAG......................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................GGCACTAGG--AGCACCTACATCTAAA-------------A........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATACATACGGACAGACGGA.................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGT----TCATACATACGGACAGACGG..................	25	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AACTCGATCTG-----------------------------------------------CGCGGGCACT...........................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AAAAAAACTCGATCTG-----------------------------------------------CGCGG................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACGGACAGACGGACAGAC............	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CGGGCACTAGG--AGCACCTACA............................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATACATACGGACAGACGGACAGACA...........	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCGT----TCATACATACGGACAGACGG..................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GATCTG-----------------------------------------------CGCGGGCACTAGG--A.....................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................GCACTAGG--AGCACCTACATCTAAA-------------AT.......................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGCGT----TCATACATACGGACAGA.....................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATATACAACGCA-----------AATT--TGAAGTCTC---------------------------------------------------------------CAGGTCTAAAAGTGTTGA-AATTAGGC-TAA--AAAACAAAGTCGAT-TT-----T----------------TCGATT----------------------------------------ATTC-------------------------------------------------------------TCGATAAAACAGTTATCGGATGAGTTATCGAAAAAATAAAGCAAACTCGTGCTG-----------------------------------------------CCTATGGTATACA--CGAGTATGCATGCCAA-------------ATTTCAG--------------------CTCTCTAGCTCTTATATCTTCT-GAGATCCTTTTGC----TCATACGGA----CGGA------------CGG--ACGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................TACA--CGAGTATGCATGCCAA-------------ATTTCAG--------------------C.............................................................................	28	20	30.35	607	137	0	0	0	470	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCTTCT-GAGATCCTTTTGC----T.....................................	25	20	1.45	29	29	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCTTCT-GAGATCCTTTTGC----TCA...................................	27	20	1.25	25	25	0	0	0	0	0
....................................TC---------------------------------------------------------------CAGGTCTAAAAGTGTTGA-AATTAGGC-.....................................................................................................................................................................................................................................................................................................................................................................................................................	28	4	0.75	3	1	0	0	0	2	0
.............................TGAAGTCTC---------------------------------------------------------------CAGGTCTAAAAGTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0
.............................TGAAGTCTC---------------------------------------------------------------CAGGTCTAAAAGTGTTGA-..............................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0
.................................................................................................................................TAA--AAAACAAAGTCGAT-TT-----T----------------TCG......................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
.....................................C---------------------------------------------------------------CAGGTCTAAAAGTGTTGA-AATTAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	1	0	0	0	0	0
....................................TC---------------------------------------------------------------CAGGTCTAAAAGTGTTGA-AATTAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0
....................................TC---------------------------------------------------------------CAGGTCTAAAAGTGTTGA-AATT..........................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AAAACAGTTATCGGATGAGTTATCGAA..........................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	1
....................................TC---------------------------------------------------------------CAGGTCTAAAAGTGTTGA-AAT...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAA-------------ATTTCAG--------------------CTCTCTAGCTC...................................................................	21	20	0.15	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TATCGGATGAGTTATCGAAAAAATAAAGC................................................................................................................................................................................................................	29	20	0.15	3	3	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TACA--CGAGTATGCATGCCAA-------------ATTTCAC--------------------..............................................................................	27	20	0.10	2	0	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATATCTTCT-GAGATCCTT..............................................	21	20	0.10	2	2	0	0	0	0	0
.........................TT--TGAAGTCTC---------------------------------------------------------------CAGGTCTAAAAGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	2	0
..ATACAACGCA-----------AATT--TGAAGTCTC---------------------------------------------------------------C................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...TACAACGCA-----------AATT--TGAAGTCTC---------------------------------------------------------------CAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATATCTTCT-GAGATCCTTTTGC----......................................	25	20	0.05	1	0	1	0	0	0	0
.............................TGAAGTCTC---------------------------------------------------------------CAGGTCTAAAAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTTCT-GAGATCCTTTTGC----TCA...................................	25	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................A-------------ATTTCAG--------------------CTCTCTAGCTCTTAT...............................................................	23	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG--------------------CTCTCTAGCTCTTATATCTTC.........................................................	24	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATATCTTCT-GAGATCC................................................	19	20	0.05	1	0	0	0	0	1	0
..........CA-----------AATT--TGAAGTCTC---------------------------------------------------------------CAGGTCTAAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...TACAACGCA-----------AATT--TGAAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.....CAACGCA-----------AATT--TGAAGTCTC---------------------------------------------------------------CAGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
.TATACAACGCA-----------AATT--TGAAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0

droGri2

ATATAA----------------------------------------------------------------------------------------------------------ATAAAAAAAAAACAAG-----------TAAGACAAT-TTGTAGTTGAGTGATCTCGACTAAGATAT-----------------------------ACCCTACA-----------------------------------------GCCAGC--------------------------------------------------------TGTTAAATATATTC----------------------------------TGGTTTGATTGCCGATCTGACCGAGGCATACG--ATAACTTATATTCCAA-------------ATTTTA---------------------GTCTCTAGCCCTTATAGTCTCT-AAGATCCATATAT----TTATAGCGA----TAAACAGA----CGG--AA--TTGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

AATCGT-----------------CTC----------------------------------------------------------------------------------------------------------------------------------T----------------GAGATT----------------------------------------TCTGGATGCCC---------------------------------------------------------------CAG-------------------AGTTTTGAAATATTTTTGTAGCA-----------------------------------------------GTGACATATCACA--GAAGTCTGGATCCAAA-------------ACATCGT--------------------TGCTCTAGCTCTTATAGTCTTT-GAGCATTAGGCGC----TGAAGGGGACGGACAGACGGACAGACGGACGG--ACGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACAGACGGACGG--ACGG	20	20	20.00	400	0	0	0	0	0	0	0	0	400	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGACAGACGGACAGACGGACGG--....	25	20	3.15	63	0	0	0	0	0	0	0	0	63	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGTCTTT-GAGCATTAGG.............................................	21	20	2.40	48	0	0	0	0	0	0	48	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGACAGACGGACAGACGGACG.......	24	20	2.05	41	0	0	0	0	0	0	0	0	41	0
........................................................................................................................................................................................................................................................................................................................................TTTTGTAGCA-----------------------------------------------GTGACATATCACA--GA....................................................................................................................................	25	20	1.65	33	0	0	0	0	0	0	0	0	33	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTAGGCGC----TGAAGGG...............................	20	20	1.20	24	0	24	0	0	0	0	0	0	0	0
.....T-----------------CTC----------------------------------------------------------------------------------------------------------------------------------T----------------GAGATT----------------------------------------TCTGGATGCCC---------------------------------------------------------------C................................................................................................................................................................................................................................................	23	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGGACAGACGGACGG--ACGG	23	20	1.00	20	0	0	0	0	0	0	0	0	20	0
.....T-----------------CTC----------------------------------------------------------------------------------------------------------------------------------T----------------GAGATT----------------------------------------TCTGGATGCCC---------------------------------------------------------------CA...............................................................................................................................................................................................................................................	24	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TCACA--GAAGTCTGGATCCAAA-------------AC.......................................................................................................	23	20	0.95	19	19	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTT-GAGCATTAGGCGC----T.....................................	20	20	0.75	15	0	15	0	0	0	0	0	0	0	0
.....T-----------------CTC----------------------------------------------------------------------------------------------------------------------------------T----------------GAGATT----------------------------------------TCTGGATGCCC---------------------------------------------------------------.................................................................................................................................................................................................................................................	22	3	0.67	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGACGGACAGACGGACAGA.............	21	20	0.45	9	0	0	0	0	0	0	9	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACAGACGGACAGACGG..........	20	20	0.35	7	0	0	0	0	0	0	7	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTCTTT-GAGCATTAGGC............................................	21	20	0.35	7	0	0	0	0	0	0	0	7	0	0
.....T-----------------CTC----------------------------------------------------------------------------------------------------------------------------------T----------------GAGATT----------------------------------------TCTGGATGCCC---------------------------------------------------------------CAG-------------------A..........................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACAGACGGACAGACGGACG.......	23	20	0.30	6	0	0	0	0	0	0	0	6	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACAGACGGACAGACGGACGG--A...	25	20	0.25	5	0	0	0	0	0	0	0	0	0	5
........................................................................................................................................................................................................................................................................................................................................TTTTGTAGCA-----------------------------------------------GTGACATATC...........................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTCTTT-GAGCATTAGGCGC----......................................	22	20	0.25	5	0	0	0	0	0	0	0	0	5	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TGAAGGGGACGGACAGACGG..................	21	20	0.20	4	0	0	0	0	0	0	0	4	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAGGCGC----TGAAGGGGAC............................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TATCACA--GAAGTCTGGATCCAA.......................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAGGCGC----TGAAGGGG..............................	19	20	0.15	3	0	0	0	0	0	0	0	0	3	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GAGCATTAGGCGC----TGAAGGGGACG...........................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................CACA--GAAGTCTGGATCCAA.......................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGCGC----TGAAGGGGACG...........................	18	20	0.15	3	0	0	0	0	0	0	3	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAA-------------ACATCGT--------------------TGCTCTAGCTCT..................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGGACGGACAGACGGACAGAC............	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATAGTCTTT-GAGCATTAGGCG...........................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGGACAGACGGACGG--....	19	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................TTGAAATATTTTTGTAGCA-----------------------------------------------GTGA.................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATAGTCTTT-GAGCATTAGGCGC----A.....................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGGGACGGACAGACGGA.................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CAAA-------------ACATCGT--------------------TGCTCTAGCTC...................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC----TGAAGGGGACGGACAGAC....................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ACATATCACA--GAAGTCTGGATCCA........................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TTTTGTAGCA-----------------------------------------------GTGACATATCACA--G.....................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................CA-----------------------------------------------GTGACATATCACA--GAAGTCTG..............................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTTT-GAGCATTAGGCGC----TGAAGG................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ACATATCACA--GAAGTCTGGATCCAAA-------------A........................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTAGGCGC----TGAAGGGGACG...........................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------------ACATCGT--------------------TGCTCTAGCTC...................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TTTGAAATATTTTTGTAGC.....................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................CA-----------------------------------------------GTGACATATCACA--GAAGTCTGGA............................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................AATATTTTTGTAGCA-----------------------------------------------GTGAC................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

GCAACA-----------------GATT--TTCGTCCTTTGTGGGGGCGGAAG-------------------------GGGGTGGGGCGAAATTCTGAAATATAGGTTTTATAGTGAGAAAAATTTGGT-TACTCTAGACTTAATTGTC-TC-----T----------------GAGATT----------------------------------------TGTGGATACCA-------------------CAGATTT------TCGCCCTTTGGGAGGGCAGAAGTGGGCGGGGCAA-------------------AGTTTTGAAATATTTTTGTAGCA-----------------------------------------------GTGACATATCACA--GAAGTCTGGATCCAAA-------------ATATCGT--------------------TGCTATAACT--------------------AGCTGT----ATATA-GGA----CGGACAGA--------CAGACAGGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................ACATATCACA--GAAGTCTGGATCC.........................................................................................................................	23	20	6.50	130	0	130	0	0	0	0
.............................TTCGTCCTTTGTGGGGGCGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	5	0	0	0	0
..........................T--TTCGTCCTTTGTGGGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	4	0	0	0	0
.........................................GGGGGCGGAAG-------------------------GGGGTGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	2	0
...................................................................................................................................................................................................................................................................................GGGCAGAAGTGGGCGGGGC................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AAATATTTTTGTAGCA-----------------------------------------------GTGAC................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................ACATATCACA--GAAGTCTGGATCCAAA-------------AT.......................................................................................................	28	20	0.05	1	0	1	0	0	0	0

droAna3

CAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAA-------------------AAATTTTAAACAAACTTAACCTG-----------------------------------------------CCCATCATTCACA--GGAGTTTTTGATCAAA-------------ATTTTAT--------------------AGCACTATCGCTAATAGACTCGGAAGATCCACATGT----TCATACGGA----TAGATAT--------ATAG--ACGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TTTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGGAA-------------------ATTTTTGAAACAAACTTGAACTG-----------------------------------------------TGTGGGCATTGTA--GAAGTCTG----CCAA-------------ATCCTAT--------------------ATCTCTATCTCTTATAGTCTAT-GATAAACG---GA----TCATACGGA----TAAACGGA----CGGACGG--ACAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCTGCG-----------------AGTT--CGAGTGCCTGGATCCACCCGGCGAGGACAAGCTGTACCAGGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTCC-AAAA-----------------------------------------------AATA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTGCAA-----------------TAACTACACAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCC------------------------------------------------GAAAGTTTCAGTACGATAGCTTCAAAA----CT-GAGAGACTAGTTT----ACATAGAAACAGACAGACGGACAGACGGACCG--ACGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCCGAC-----------------TGCC--------------------------------------------------------------------------------------------------------------------------------------------------GATATA--------------------------------TCTA---A-------CATG---TCTTAGAGTGACGGTACATACTT------TCACTATTTG--------------------TCGG-------------------CGTTTTGAAATAAACTTGCTCTT---------------------------------------------------------------------------------------------GCCAA--------------------ATTTCTAGAATGTATAGTTTCC-GAGATCTCGACGT----TCATACAGA----CGGACAGA--------CAG--ACGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TAAGGC-----------------G--------------------------------------------------------------------------------------------------------------------------CA-TT-----C----------------TCAAAA----------------------------------------TTTGTATACCACGT-----------------------ATCGCC--C----------------TTCTTATCGTATACA-------------------AAATC-GAAA-AAGCTTTATTGTTATACCCTTGCAGAGGGTAATATAATTTTGG------------------------------------------TCAGA-------------AGTTTGTAACGCAGT-GAAAGTTTCAGTTCGCTAGCTTTTAAA----CT-GAGCTCGCAAACGGTGTTGAAACAGA----CGGACAGA--------CGG--GCGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TATTA-----------------------------------------------------------------------------------------------------------ATGAGACAAACACAAT-----------TAAGT------------------------------------------------------------TAAAATTTTGA---T-------CCTA---TCGTAATAACGCACTACAGACTT------TCGCGGACTGT------------GGGCGTGGCAC-----------------AAACACGTGAAACAAACTTGCGCTG-----------------------------------------------CGCAGGAAGCCCA--GGAATCTGCATGCCAA-------------GTCTGCC--------------------TGTCCTAGCTCTTATAGTTTCC-GAAATCTCAGCGT----TCATACGGA----CAGA------------CAG--ACGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTTGTA-----------------AACC--TGGGAAACTGTTCGCCTTTGGAGGAAGCCAAT-----C----------AGGAATGAATAAATATA--------------------------------------------------------------------------------------------------------------TAAAATTTTGA---T-------TTCACAT-----------------------AGCG--TTA----------------GCCCCCTCGTGGCGC-------------------GTGGCTGAAATAAACTTGCGCTG-----------------------------------------------CGTTGGAAGCCGA--AGAATGTGTGTAAAAA-------------AACTGAA--------------------CCTTCTAGCTTTTGTAGTTTCC-AAGATCTCAGCGG----TTATACAGA----CAGACGGA--------CAG--ACGG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGAGTG-----------------GGCG----------TGGCTTGATCCGAAGAAAACAGTTCACATTGGGAG-CATT----------------------------------AAAAAAAC------------------------------------------------------------------CTATAAATATAAATAAATATAAACCTTCGA---T-------TTCA---TCGAATT---------TATTTTT------TCGCGATTTGTGGGCGTTGGAGTAGGCGTGGCAG-------------------GATGCTGTAATAAACATGCGCTG-----------------------------------------------TGTAGGGACCTCA--AGAATCTTCGTGGTTA-------------ATCTCAA--------------------CTTTGCATCT--------------GCATCTCAGCGT----TCATACGGA----CAGACGGACAGACGGACAG--CCGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCTGTG-----------------AGTT--CGAGTGCTTGGATCCGCCCGGCGAGGACAAACTGTACCAGGTA-CGTG----------------------------------GATGCGTGAAATATGAA-----------AATA----T-TT-----G----------------CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTATACGCGAT-------------ATTCC------------------------------------------------------------------------------------------------ACCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................CCGCCCGGCGAGGACAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCTGTG-----------------AGTT--CGAGTGCTTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TG-----------------AGTT--CGAGTGCTTGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TA----T-TT-----G----------------CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTATACG..........................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................AATA----T-TT-----G----------------CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTATAC...........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGAGTGCTTGGATCCGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGCTTGGATCCGCCCGGCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................AATA----T-TT-----G----------------CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTATACG..........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CGAGGACAAACTGTACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................ATA----T-TT-----G----------------CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTATA............................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TA----T-TT-----G----------------CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTTATAC...........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTAATA-----------------A--------------------------------------------------------------------------------------------CAAAACAATGGGCAATGC----TAAAGTCGTCTTC-----C----------------CCGACT----------------------------------------ATCAGATACT----------------------------------------------------------------CAG-------------------CAAGTGGAAATGCATTC--------------------------------------------------------GCGGAATTTA--ATAATTTTTATGGCATATCATAGATTTTGGGGATGATTTTGA-----------ATGCCTTCTAGCTTTTATAGTTCTT-GAGATCTCGACGT----TAATGCGGA----AAGACGGA--------CAG--ACGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGTTCTT-GAGATCTCGACGT----T.....................................	25	3	15.67	47	0	0	1	1	0	0	3	2	3	8	8	0	19	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GAGATCTCGACGT----TAATGCGGA----AAGA.....................	27	1	7.00	7	0	0	0	0	0	0	3	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTTCTT-GAGATCTCGACGT----T.....................................	24	3	5.67	17	0	0	0	1	0	0	0	3	4	4	4	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCTT-GAGATCTCGACGT----T.....................................	23	3	3.00	9	0	0	0	0	0	0	1	1	1	1	2	0	3	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GAGATCTCGACGT----TAATGCGGA----AAG......................	26	1	3.00	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATAGTTCTT-GAGATCTCGACGT----T.....................................	26	3	2.67	8	0	0	0	0	0	0	2	1	1	3	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGTTCTT-GAGATCTCGACGT----TA....................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTTCTT-GAGATCTCGAC............................................	24	3	1.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGGCATATCATAGATTTTGGGGA.....................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCTT-GAGATCTCGACGT----TAA...................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCTT-GAGATCTCGACG...........................................	20	4	1.00	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATAGATTTTGGGGAT....................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTT-GAGATCTCGACGT----TAATGCGGA----.........................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GAGATCTCGACGT----TAATGCGGA----.........................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTTTTATAGTTCTT-GAGATCTCG..............................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTTCTT-GAGATCTCGACGT----......................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGTTCTT-GAGATCTCGACGT----......................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGTTCTT-GAGATCTCGACGT----......................................	24	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCTT-GAGATCTCGACGT----......................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATAGTTCTT-GAGATCTCGACGT----......................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT-GAGATCTCGACGT----T.....................................	17	12	0.25	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCTT-GAGATCTCGAC............................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTCTT-GAGATCTCGAC............................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTT-GAGATCTCGACGT----T.....................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................CCGACT----------------------------------------ATCAGATACT----------------------------------------------------------------CA...............................................................................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GAGATCTCGACGT----T.....................................	16	16	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCTT-GAGATC.................................................	15	18	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAGTTCTT-GAGA...................................................	15	19	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

ATAATT-----------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTA-------------------AAAGTTAAAACAAACTTGCGCTG-----------------------------------------------CGTTTATGCATCC--AGAATCTGTATGCTGA-------------ATCCCAA--------------------CCCTCTAGCTTTTATAGCTTCT-GAGATCTCGACGT----TCATACGGA----CAGACGGTC------ATGA--CCAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GAGATCTCGACGT----TCATACGGA----C........................	24	20	0.90	18	16	2	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GAGATCTCGACGT----TCATACGGA----CAGA.....................	27	20	0.80	16	12	1	3	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCT-GAGATCTCGACGT----TCATACGGA----.........................	26	10	0.10	1	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCT-GAGATCTCGACGT----TCAT..................................	21	17	0.06	1	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-GAGATCTCGACGT----TCATACGGA----.........................	24	20	0.05	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-GAGATCTCGACGT----TCATACGGA----CA.......................	26	20	0.05	1	0	0	1	0

droYak3

GTCTGGAATGCGATCGAATCGAAAAATTACACATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--GTGACGTGAC---CGG------TCA-----------------------------------------------------------------------------------------------------CGG----------------------T----CT--GAAGG---------------------------TTGCTTCGGACCCTTAAGCTCTTGCTTTCTAGCTTTTATAGTTCCT-GAGATCTCGACGT----TCATACGGATAAACAGACGGACAGACGGACGGACATGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGATAAACAGACGGACAGAC............	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCGACGT----TCATACGGATAAACA.......................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACGGATAAACAGACGGACAGA.............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACAGACGGACAGACGGACGGACA...	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGACGT----TCATACGGATAAA.........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACAGACGGACAGACGGACGG......	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGATAAACAGACGGAC................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GG---------------------------TTGCTTCGGACCCTTAA.....................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................GG------TCA-----------------------------------------------------------------------------------------------------CGG----------------------T----CT--GAAGG---------------------------TTGCTTCGGAC...........................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGACGGACAGACGGACGGACA...	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCT-GAGATCTCGACGT----TCAT..................................	20	20	0.15	3	0	0	0	0	0	1	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGACGGACAGACGGAC........	20	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GAGATCTCGACGT----TCATACGGAT............................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTCCT-GAGATCTCGAC............................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCGACGT----TCATACGGAT............................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GGGCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCGTGGCCA-------------------AATTTGGAAACAAATTTCCGCTG-----------------------------------------------CGTCTACGTCTCT--GAAAGCTGCATGCTTA-------------ATCT--G--------------------CATTCTAGCTTTTGTAGTTCCT-GAGCTCGAGGCGT----TCATACGGA----CAGACAAACAGACGGATGG--ACAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dwi_366

scf2_1100000004401:771485-771635 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads