ID:

dwi_3613

 Coordinate:

scf2_1100000004949:1816207-1816357 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dwil\GK10523-cds]; exon [dwil_GLEANR_10713:2]; intron [Dwil\GK10523-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCAAAAAAAACGCCTGTTTTGATTTAAACAGTCCTGAGGAGCATAACAAGTAAGAGAGACAAAAAAAGAAAAAACGGGAAAAAGCAAACGACTTCTTATGCAAACAACAGACAGCACACACACACACACACATTAATAGGGATGGTAGTCTTATCTTGTCATTAATTCATATCCAACCCTATCTAGCACTTTCATGCTAATTGAGAAGACTACACGTGGGTCAAGCCACGGTTATCGGTTCAGATTTTGG
**************************************************(((.(((((.......(((((....((............))..))))).(((............)))...................((((((.(((...........................))).))))))......))))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 M045
female body
 V119
head
...........................AACAGTCCTGAGGAGCATAA............................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0
...................TTGATTTAAACAGTCCTGAGGAGC................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
..................TTTGATTTAAACAGTCCTGAGGAGC................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0
..........................AAACAGTCCTGAGGAGCATAACA.......................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0
...........................AACAGTCCTGAGGAGCATAACA.......................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................AATTGAGAAGACTACACGTGG............................... 21 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................................CGTCAGGTGGGTCAAGCCACG.................... 21 3 2 0.50 1 0 0 1 0
.........................................................................................CGACTTCTTCTGCAAACGCC.............................................................................................................................................. 20 3 3 0.33 1 0 0 1 0
.............................................................................................................................................................TGCCATTGATTCATATCC............................................................................ 18 2 12 0.17 2 0 0 2 0
...............................................................AAAAAGAAAAAAAGGGAAAAAG...................................................................................................................................................................... 22 1 7 0.14 1 1 0 0 0
.....................GATTTAAACATCCCTGGGG................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 1
..................................................GTAATAGAGACAAAAAAG....................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

TCGTTTTTTTTGCGGACAAAACTAAATTTGTCAGGACTCCTCGTATTGTTCATTCTCTCTGTTTTTTTCTTTTTTGCCCTTTTTCGTTTGCTGAAGAATACGTTTGTTGTCTGTCGTGTGTGTGTGTGTGTGTAATTATCCCTACCATCAGAATAGAACAGTAATTAAGTATAGGTTGGGATAGATCGTGAAAGTACGATTAACTCTTCTGATGTGCACCCAGTTCGGTGCCAATAGCCAAGTCTAAAACC
**************************************************(((.(((((.......(((((....((............))..))))).(((............)))...................((((((.(((...........................))).))))))......))))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body
...........................................................................................................................................CCCTACCATCAGAATAGAACA........................................................................................... 21 0 1 1.00 1 1 0
....................................................................................................CGTTTGTCGTCTGAGGTGTGTGTGT.............................................................................................................................. 25 3 2 0.50 1 1 0
......................................................................................................................................................................AAGTCCAGGTTGGCATAGAT................................................................. 20 3 5 0.20 1 1 0
.......................................................................................................TTGTCGTCTGTCGTTTGTGT................................................................................................................................ 20 2 17 0.06 1 1 0
..............................TCAGGACTCCTCGAAGCG........................................................................................................................................................................................................... 18 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004949:1816157-1816407 - dwi_3613 AGCAAAAAAAAC------------GCCTGTTTTGATTTAAACAGTCCT---GAGGAGCATAACAAGTAAGAGAGACAAAAAAAGAAAAAACGGGAAA-AAGCA-------------------------------AAC--GACTTCTTATGCAAACAA-C-AGACAGCACACACACACACACACATTAA--------------------------------------------------------------------------------------------TAGGGATGGTAGTCTTATCT----TGT-C----ATTAATTCAT-----------A----TCCAACCCTA--------TCTAGCACTTTCATGCTAATTG------A-----------------------------------------------------------------G--AAG-------------ACTACACGTGGGTCAAG---------CCACGGTTATCGGTTCAGATTTTGG-----
droVir3 scaffold_13049:20277132-20277391 - dvi_20731 GGCAAGAAACATGGGAGCATCAGCAGCAGCTTTGATCTGAACAGTCCC---GAGAAGAACAAGAAGTAAGTGAACGAACGGCA---------------------CTTGTGTGC-----------------------GTGGGGCTCTTATGCAAACGA-T-GAACGACGCG-----CTGCA-----------------------------------------------------------------------------------------------------------CTGCGGCTTATCT---CGTAGCATTAATTTTATCACAAAA----AGAAGCCTACGGTGTCGACCTTTCTATATAACACAGACACGTTAATTG------A---------------------------------GAAAC-----------------------CAGAG--CAGT-----CGCACAGACAACACGTGGGTCAG----------TGTCGGTTATC-------------------
droMoj3 scaffold_6680:7980157-7980227 - GGCAAGAAACATGGGAGCATCAGCAATAACTTTGATCTCAACAGTCCC---GAGAAGAACAAGAAGTAAGTGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:19889559-19889816 + GGCAAGAAATATGGCAGCGTCAGCAGCAGCTTCGATCTGAACAGTCCC---GAAAAAAACAAAAAGTAAGTGAACCAAGAAGAGCAAAGAAGAAGAA-GCACAGCTGACTTGG-------GG----------------GGGCTGCTTATGCAAACG-GT-TGGATGAACG-----CTGCA------------------------------------------------------------------------------------------------------------TGCGGCTTATCTGAGCATATAATTTTTTTTATC--------------------AGACACGACCTTTGTATTTAGCGTTGTTATGTTAATTA------A---------------------------------GTAACCGGG-----------------------G--CA-------------GACAACACGTGGGTCACT----------CTCGGTTATC-------------------
dp5 XR_group6:251695-251979 + AGCAAGAAGAAC------------GGCAGCTTCGATCTGAACAGTCCCCCGGAGGAGCACAACAAGTAAGAGAACAG--------------------AACACAGCTGAAATGC-------CG-----------------AAACGCTTATGCAAACAA-T--------GCGTGTGCCTGCACATGTTGGAAATGTG-------TCGGAAAGGGA--G----------------------------------------------------------CG-----AGGGACCCTCGTCTTATCT----TGA-C----ATTTTATCGCAAGAGACAAG-A----GACTGAGCGACCT----AGCTAGCACTCCTATGCTAATTG------A---------------------------------GAAGC-GGAGCAGAGCG------CTCACAGTAG--GAG-------------GCAACACGTGGGTCAAG---------CATCGGTTATCGGC----------------
droPer2 scaffold_12:938699-938983 + AGCAAGAAGAAC------------GGCAGCTTCGATCTGAACAGTCCCCCGGAGGAGCACAACAAGTAAGAGAACAG--------------------AACACAGCTGAAATGC-------CG-----------------AAACGCTTATGCAAACAA-T--------GCGTGTGCCTGCACATGTTGGAAATGTG-------TCGGAAAGGGA--G----------------------------------------------------------CG-----AGGGACCCTCGTCTTATCT----TGA-C----ATTTTATCGCAAGAGACAAG-A----GACTGAGCGACCT----AGCTAGCACTCCTATGCTAATTG------A---------------------------------GAAAC-GGAGCAGAGCG------CTCACAGTAG--GAG-------------GCAACACGTGGGTCAAG---------CATCGGTTATCGGC----------------
droAna3 scaffold_13337:17362500-17362748 + AGCCGGAAGAAC------------GGCAGCTTCGACCTCAACAGTCCC---GAGGAGCACAAAAAGTAAGAGAATCTGAAATAATTA----------------------------------------------T-TT--CGGTGCTTATGCAAACA------------------------CATG---------TGGAAAACG------------TGGAAAGTGTCGGGGGG---------GA-----GTC----C-----------------GCTT----CAGAGACCCTCGTCTTATCT---TTGA-C----ATTTTATCGGAGGA-------A----TCCGCCACGA--------CCTGGCACCATCATGCTAATTG------CCTAGGAGC-----------------------------------------A------TTCTCGCCGG--GAGC-----CGGG-AGACAACACGTGGGTTA-----------------------------------------
droBip1 scf7180000396741:663696-663944 + AGCCGGAAGAAC------------GGCAGCTTCGACCTCAACAGTCCC---GAGGAGCACAAAAAGTAAGAGAATCTGAAATAATTA----------------------------------------------T-TT--CGGTGCTTATGCAAACA----------------------CACATGTGGAAAACGTG---------------------GAAAGTGTCGTCGGAG-----GC----GG----A----G-----------------GGCATCTGCAGAGACCCTCGTCTTATCT---TTGA-C----ATTTTATCGCAGGA-------A----TCCGCCACGA--------CCTGGCACCATCATGCTAATTG------CCAAGGGGC-----------------------------------------A------TTCTCGCCGG--GAGA-----C--------AACACGTGGGTTA-----------------------------------------
droKik1 scf7180000302686:1257508-1257811 + GGCCGAAAGAAT------------GGCAGCTTCGATCTGAACAGTCCC---GAGGAGCACAACAAGTAAGGGCATCG--------------------T---------------CCAAATCCG---------AATCTT-TGGCCTCTTATGCAAACA-CCCAGGCAGCAG------TAGCACATG-------TGTGGAAAGTG------------TGTGGAG---CGGGGGAA--AGCGGAGA-----GTG----G-----------------GGCT-----AGCGACCCTCGTCTTATCT---TTGA-C----ATTTTATCGCAGGA-------A----TCCGTGGCGA--------CCTAGCACTGCCATGCTAATTG------CTC-----------------------------------------------------------TCTAG--GAGACGCTAGC-TAGGAGAACACGTGGGTCAGGCAGGCGACGCGTCGGTTATCGGCTCCATTTTCAT-----
droFic1 scf7180000454065:1809508-1809828 + GGCCGAAAGAAC------------GCCAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAAT--CT---------------------------------------------------------TTT--GGCTGCTTATGCAAACAAGG----------------CAGCACATGGTGAAAATGTGGAAAGTG----------CGGGAAAAGTGTTGAGGAA------------GG----GGGACT-----------------GTTT-----CGAGACCCTCGTCTTATCT---CTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGACCT----ATGTAGCACTATAATGCTAATTG------TTCCCAA---AGTATATATTAAATATATATACGT----------------ATATATAGGCTCCCTAG--GAGA-----CCCAA-GGGAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAATTTAAA
droEle1 scf7180000491000:884741-885040 - GGCCGGAAAAAT------------GCCAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAAT-------------------------------------------------------------CTT--GGCTGCTTATGCAAACA-CC----------------CAGCACATGGTGAAAATGTGGAAAGCG----------AGGGAAAAGTGGCGGAGG--------T----GG----G----G-----------------GGTT-----CGAGACCCTCGTCTTATCT---CTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACCGTAATGCTAATTGCCATTGCTCCCAAGCATATA---------------CACTT----------------ACATATACTCTCCCTAG--GAGA-----CCCAAGGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCACTTTTAT-----
droRho1 scf7180000779176:9226-9525 - GGCCGGAAGAAT------------GCCAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAAT-------------------------------------------------------------CTT--GGGTGCTTATGCAAACA-GC----------------CAGCACATGGTGAAAATGTGGAAAGCG----------AGGGAAAAGTGGCGGAG------------A-GG----G----G-----------------GACT-----CGAGACCCTCGTCTTATCT---CTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACCGTAATGCTAATTGCTATTGCTCCCAGGCGCATA---------------T--------------------ATGTATACTCTCCCTAG--GAGA-----CCCAAGGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCACTTTAATTTAAA
droBia1 scf7180000302334:904423-904716 + GGCCGGAAGAAC------------GCCAGCTTCGACCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAAT--CTT-----------------------------GGG-----------------------TCTCGGCGGTGCTTATGCAAACA-GA----------------CAGCACACGGTGAAAATGTGGAAAGCG------------GGCAA--------GGGAA----CGC---AGGG-GCC----G-----------------GGCT-----CGAGACCCTCGTCTTATCG---CTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTGGCACTGTGATGCTAATTG------GTCCCAGGCAAACA---------------TTCCT----------------A-GTGTTCTCTCCCTAG--GAGA-----CC---AGGGAACACGTGGGTCAGC---------CGGCGGTTATCGGCTCCGATTT--------
droTak1 scf7180000415795:918300-918605 - GGCCGGAAGAAC------------GCCAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTGAGAAT--CTT-------------------------------------------G---------AATCTT--GGGTGCTTATGCAAACA-GA----------------CAGCACATGGTGAAAATGTGGAAAGCG------------GGAAAAGTGA-GTGGGAA--AAGAC----GG----G----G-----------------GGTT-----CGGGACCCTTGTCTTATCG---CTGA-C----ATTTTATCGCAAGAAA--AGAA----TCCGTGGCGA--------CCTAGCACTGTAATGCTAATTG------CTCCCAAGCAAATA---------------TTCCT----------------A------TTCTCCCTAG--GAGA-----CCG--GGGGAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAATTTAAA
droEug1 scf7180000408844:226939-227246 - GGCCGAAAGAAC------------GCCAGTTTTGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAAA--CTGAAA---CT-------------------------G---------------------TC-T--CAATGCTTATGCAAACAGAA----------------CAGCACATGGTGAAAATGTGGAAAGCG------------GGA-AAGTGTCGGGGGAAGAAATGTTGAAGGG-G-C----C-----------------GGTT-----CGAGACCCTCGTCTTATCG---CTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACTGTAATGCTAATTG------CTCCCAAGCAAATA---------------GCCTT----------------A------TTCTCCCTAG--GAGA-----CCCGTTGGAAACACGTGGGTCAGA---------CGTCGGTTATCGGCTTGATTTTAA------
dm3 chr3L:15500296-15500622 - GGCCGCAAGAAC------------GCTAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAATGCCA--------------------TGCTCA---TATGTAACCATACCCA---------AATCTT--GGGTGCTTATGCAAACG-GA----------------TGGCACATGGTGA-AATGTGGAAAGCG------------GGAAAAGTGACGGGGGAA--AACGCGGA-----CTG----G-----------------GGTT-----CAAGACCCTCGTCTTATCG-CACTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACAGTAATGCTAATTG------CTCCCGAGCAAGTA---------------GTCTT----------------A------TTCTCGCTAGGGGAGA-----CCCATTGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAAT-----
droSim2 3l:15133872-15134205 - dsi_2102 GGCCGCAAGAAC------------GCCAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAATGCCA--------------------TGCTCATCATATATACCCATACCCG---------AATCTT--GGGTGCTTATGCAAACG-GA----------------TGGCACATGGTGA-AATGTGGAAAGCG------------GGAAAAGTGACGGGGGAA--AATGC----GGGGCTG----G-----------------GGTT-----CAAGACCCTCGTCTTATCG-CGCTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACAGTAATGCTAATTG------CTCCCGAGCAAGTA---------------GTCTT----------------A------TTCTCGCTAG--GAGA-----CCTATGGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAATTTAAA
droSec2 scaffold_0:7609642-7609787 - G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTATCG-CGCTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACAGTAATGCTAATTG------CTCCCGAGCAAGTA---------------GTCTT----------------A------TTCTCGCTAG--GAGA-----CCCATGGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAAT-----
droYak3 3L:18015578-18015912 - GGCCGCAGGAAC------------GCCAGTTTCGACCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAATCCCA--------------------T-------------GC-------CGAAACCGAAAAATCTT--GGGTGCTTATGCAAACG-GT----------------CGGCACATGGTGA-AATGTGGAAAGCG------------GGAAAAGTGGCGGGGGAA--AACGTGGA-----ATG----GGTGAAATGGGTGGAATGAGTT-----CAAGACCCTCGTCTTATC-----TGA-C----ATTTTGTCGTAAGA-------A----TCCGCGGCGA--------CCTAGCACAGTAATGCTAATTG------CTCCCGAGCAAACA---------------GTCTT----------------A------TTCTCCCTAG--GAGA-----CCCATTGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAATTTAAA
droEre2 scaffold_4784:17756498-17756559 - GGTCGCAGGAAC------------GCCAGTTTCGACCTGAACACTCCC---GAGGAGCACAAAAAGTAAGAATGCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AGCAAAAAAAAC------------GCCTGTTTTGATTTAAACAGTCCT---GAGGAGCATAACAAGTAAGAGAGACAAAAAAAGAAAAAACGGGAAA-AAGCA-------------------------------AAC--GACTTCTTATGCAAACAA-C-AGACAGCACACACACACACACACATTAA--------------------------------------------------------------------------------------------TAGGGATGGTAGTCTTATCT----TGT-C----ATTAATTCAT-----------A----TCCAACCCTA--------TCTAGCACTTTCATGCTAATTG------A-----------------------------------------------------------------G--AAG-------------ACTACACGTGGGTCAAG---------CCACGGTTATCGGTTCAGATTTTGG-----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................AACAGTCCT---GAGGAGCATAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...............................TTGATTTAAACAGTCCT---GAGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..............................TTTGATTTAAACAGTCCT---GAGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
......................................AAACAGTCCT---GAGGAGCATAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.......................................AACAGTCCT---GAGGAGCATAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
......................................................................................................................................................................................................................................................................................................................................................................................AATTG------A-----------------------------------------------------------------G--AAG-------------ACTACACGTGG.............................................2111.00100010
droVir3
GGCAAGAAACATGGGAGCATCAGCAGCAGCTTTGATCTGAACAGTCCC---GAGAAGAACAAGAAGTAAGTGAACGAACGGCA---------------------CTTGTGTGC-----------------------GTGGGGCTCTTATGCAAACGA-T-GAACGACGCG-----CTGCA-----------------------------------------------------------------------------------------------------------CTGCGGCTTATCT---CGTAGCATTAATTTTATCACAAAA----AGAAGCCTACGGTGTCGACCTTTCTATATAACACAGACACGTTAATTG------A---------------------------------GAAAC-----------------------CAGAG--CAGT-----CGCACAGACAACACGTGGGTCAG----------TGTCGGTTATC-------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-----CGCACAGACAACACGTGGGTCAG----------TG............................2711.001000100000000000000000000000000000000000000000000000000000000000
...AAGAAACATGGGAGCATCAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000010000000000000000000000000000000000000000000000
.................................................................GTAAGTGAACGAACGGCA---------------------CTTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000010000000000000000000000000000000000000000000000000000000
.......AACATGGGAGCATCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
...................................TCTGAACAGTCCC---GAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
....................................CTGAACAGTCCC---GAGAAGAACAAGAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000100000000000000000000000000000000000000000000
.......................CAGCAGCTTTGATCTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
............................GCTTTGATCTGAACAGTCCC---GAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000100
........................AGCAGCTTTGATCTGAACAGTCCC---GAGAAGAACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................3611.001000000000000000000000000000000000000000000000000000000000010000
droMoj3
GGCAAGAAACATGGGAGCATCAGCAATAACTTTGATCTCAACAGTCCC---GAGAAGAACAAGAAGTAAGTGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................TTGATCTCAACAGTCCC---GAGAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......................................CAACAGTCCC---GAGAAGAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.................................GATCTCAACAGTCCC---GAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
GGCAAGAAATATGGCAGCGTCAGCAGCAGCTTCGATCTGAACAGTCCC---GAAAAAAACAAAAAGTAAGTGAACCAAGAAGAGCAAAGAAGAAGAA-GCACAGCTGACTTGG-------GG----------------GGGCTGCTTATGCAAACG-GT-TGGATGAACG-----CTGCA------------------------------------------------------------------------------------------------------------TGCGGCTTATCTGAGCATATAATTTTTTTTATC--------------------AGACACGACCTTTGTATTTAGCGTTGTTATGTTAATTA------A---------------------------------GTAACCGGG-----------------------G--CA-------------GACAACACGTGGGTCACT----------CTCGGTTATC-------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
AGCAAGAAGAAC------------GGCAGCTTCGATCTGAACAGTCCCCCGGAGGAGCACAACAAGTAAGAGAACAG--------------------AACACAGCTGAAATGC-------CG-----------------AAACGCTTATGCAAACAA-T--------GCGTGTGCCTGCACATGTTGGAAATGTG-------TCGGAAAGGGA--G----------------------------------------------------------CG-----AGGGACCCTCGTCTTATCT----TGA-C----ATTTTATCGCAAGAGACAAG-A----GACTGAGCGACCT----AGCTAGCACTCCTATGCTAATTG------A---------------------------------GAAGC-GGAGCAGAGCG------CTCACAGTAG--GAG-------------GCAACACGTGGGTCAAG---------CATCGGTTATCGGC----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................G-A----GACTGAGCGACCT----AGCTAG....................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................AGAGACAAG-A----GACTGAGCGA.................................................................................................................................................................................2011.0010100000000
.................................GATCTGAACAGTCCCCCGGAGGAGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.......................................................................................................................................................................................GTTGGAAATGTG-------TCGGAAA.............................................................................................................................................................................................................................................................................................................................1911.0010100000000
........GAAC------------GGCAGCTTCGATCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
......................................................................................................AGCTGAAATGC-------CG-----------------AAACGCT............................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
AGCAAGAAGAAC------------GGCAGCTTCGATCTGAACAGTCCCCCGGAGGAGCACAACAAGTAAGAGAACAG--------------------AACACAGCTGAAATGC-------CG-----------------AAACGCTTATGCAAACAA-T--------GCGTGTGCCTGCACATGTTGGAAATGTG-------TCGGAAAGGGA--G----------------------------------------------------------CG-----AGGGACCCTCGTCTTATCT----TGA-C----ATTTTATCGCAAGAGACAAG-A----GACTGAGCGACCT----AGCTAGCACTCCTATGCTAATTG------A---------------------------------GAAAC-GGAGCAGAGCG------CTCACAGTAG--GAG-------------GCAACACGTGGGTCAAG---------CATCGGTTATCGGC----------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................ATGCTAATTG------A---------------------------------GAAAC-GGAGCAGAGC...........................................................................................2611.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACACGTGGGTCAAG---------CATCG.........................2211.001000001
............................................................................G--------------------AACACAGCTGAAATGC-------C.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................................GATCTGAACAGTCCCCCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droAna3
AGCCGGAAGAAC------------GGCAGCTTCGACCTCAACAGTCCC---GAGGAGCACAAAAAGTAAGAGAATCTGAAATAATTA----------------------------------------------T-TT--CGGTGCTTATGCAAACA------------------------CATG---------TGGAAAACG------------TGGAAAGTGTCGGGGGG---------GA-----GTC----C-----------------GCTT----CAGAGACCCTCGTCTTATCT---TTGA-C----ATTTTATCGGAGGA-------A----TCCGCCACGA--------CCTGGCACCATCATGCTAATTG------CCTAGGAGC-----------------------------------------A------TTCTCGCCGG--GAGC-----CGGG-AGACAACACGTGGGTTA-----------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................A----TCCGCCACGA--------CCTGGCACCA...............................................................................................................................................................2111.001100000
..............................TTCGACCTCAACAGTCCC---GAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
......................................CAACAGTCCC---GAGGAGCACAAAAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................GGAGC-----------------------------------------A------TTCTCGCCGG--GAGC-----CGGG-A.........................................................2511.001000010
droBip1
AGCCGGAAGAAC------------GGCAGCTTCGACCTCAACAGTCCC---GAGGAGCACAAAAAGTAAGAGAATCTGAAATAATTA----------------------------------------------T-TT--CGGTGCTTATGCAAACA----------------------CACATGTGGAAAACGTG---------------------GAAAGTGTCGTCGGAG-----GC----GG----A----G-----------------GGCATCTGCAGAGACCCTCGTCTTATCT---TTGA-C----ATTTTATCGCAGGA-------A----TCCGCCACGA--------CCTGGCACCATCATGCTAATTG------CCAAGGGGC-----------------------------------------A------TTCTCGCCGG--GAGA-----C--------AACACGTGGGTTA-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GGCCGAAAGAAT------------GGCAGCTTCGATCTGAACAGTCCC---GAGGAGCACAACAAGTAAGGGCATCG--------------------T---------------CCAAATCCG---------AATCTT-TGGCCTCTTATGCAAACA-CCCAGGCAGCAG------TAGCACATG-------TGTGGAAAGTG------------TGTGGAG---CGGGGGAA--AGCGGAGA-----GTG----G-----------------GGCT-----AGCGACCCTCGTCTTATCT---TTGA-C----ATTTTATCGCAGGA-------A----TCCGTGGCGA--------CCTAGCACTGCCATGCTAATTG------CTC-----------------------------------------------------------TCTAG--GAGACGCTAGC-TAGGAGAACACGTGGGTCAGGCAGGCGACGCGTCGGTTATCGGCTCCATTTTCAT-----SizeHit CountTotal NormTotal
No Reads
droFic1
GGCCGAAAGAAC------------GCCAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAAT--CT---------------------------------------------------------TTT--GGCTGCTTATGCAAACAAGG----------------CAGCACATGGTGAAAATGTGGAAAGTG----------CGGGAAAAGTGTTGAGGAA------------GG----GGGACT-----------------GTTT-----CGAGACCCTCGTCTTATCT---CTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGACCT----ATGTAGCACTATAATGCTAATTG------TTCCCAA---AGTATATATTAAATATATATACGT----------------ATATATAGGCTCCCTAG--GAGA-----CCCAA-GGGAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAATTTAAASizeHit CountTotal NormTotal
No Reads
droEle1
GGCCGGAAAAAT------------GCCAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAAT-------------------------------------------------------------CTT--GGCTGCTTATGCAAACA-CC----------------CAGCACATGGTGAAAATGTGGAAAGCG----------AGGGAAAAGTGGCGGAGG--------T----GG----G----G-----------------GGTT-----CGAGACCCTCGTCTTATCT---CTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACCGTAATGCTAATTGCCATTGCTCCCAAGCATATA---------------CACTT----------------ACATATACTCTCCCTAG--GAGA-----CCCAAGGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCACTTTTAT-----SizeHit CountTotal NormTotal
No Reads
droRho1
GGCCGGAAGAAT------------GCCAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAAT-------------------------------------------------------------CTT--GGGTGCTTATGCAAACA-GC----------------CAGCACATGGTGAAAATGTGGAAAGCG----------AGGGAAAAGTGGCGGAG------------A-GG----G----G-----------------GACT-----CGAGACCCTCGTCTTATCT---CTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACCGTAATGCTAATTGCTATTGCTCCCAGGCGCATA---------------T--------------------ATGTATACTCTCCCTAG--GAGA-----CCCAAGGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCACTTTAATTTAAASizeHit CountTotal NormTotal
No Reads
droBia1
GGCCGGAAGAAC------------GCCAGCTTCGACCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAAT--CTT-----------------------------GGG-----------------------TCTCGGCGGTGCTTATGCAAACA-GA----------------CAGCACACGGTGAAAATGTGGAAAGCG------------GGCAA--------GGGAA----CGC---AGGG-GCC----G-----------------GGCT-----CGAGACCCTCGTCTTATCG---CTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTGGCACTGTGATGCTAATTG------GTCCCAGGCAAACA---------------TTCCT----------------A-GTGTTCTCTCCCTAG--GAGA-----CC---AGGGAACACGTGGGTCAGC---------CGGCGGTTATCGGCTCCGATTT--------SizeHit CountTotal NormTotal
No Reads
droTak1
GGCCGGAAGAAC------------GCCAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTGAGAAT--CTT-------------------------------------------G---------AATCTT--GGGTGCTTATGCAAACA-GA----------------CAGCACATGGTGAAAATGTGGAAAGCG------------GGAAAAGTGA-GTGGGAA--AAGAC----GG----G----G-----------------GGTT-----CGGGACCCTTGTCTTATCG---CTGA-C----ATTTTATCGCAAGAAA--AGAA----TCCGTGGCGA--------CCTAGCACTGTAATGCTAATTG------CTCCCAAGCAAATA---------------TTCCT----------------A------TTCTCCCTAG--GAGA-----CCG--GGGGAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAATTTAAASizeHit CountTotal NormTotal
No Reads
droEug1
GGCCGAAAGAAC------------GCCAGTTTTGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAAA--CTGAAA---CT-------------------------G---------------------TC-T--CAATGCTTATGCAAACAGAA----------------CAGCACATGGTGAAAATGTGGAAAGCG------------GGA-AAGTGTCGGGGGAAGAAATGTTGAAGGG-G-C----C-----------------GGTT-----CGAGACCCTCGTCTTATCG---CTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACTGTAATGCTAATTG------CTCCCAAGCAAATA---------------GCCTT----------------A------TTCTCCCTAG--GAGA-----CCCGTTGGAAACACGTGGGTCAGA---------CGTCGGTTATCGGCTTGATTTTAA------SizeHit CountTotal NormTotal
No Reads
dm3
GGCCGCAAGAAC------------GCTAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAATGCCA--------------------TGCTCA---TATGTAACCATACCCA---------AATCTT--GGGTGCTTATGCAAACG-GA----------------TGGCACATGGTGA-AATGTGGAAAGCG------------GGAAAAGTGACGGGGGAA--AACGCGGA-----CTG----G-----------------GGTT-----CAAGACCCTCGTCTTATCG-CACTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACAGTAATGCTAATTG------CTCCCGAGCAAGTA---------------GTCTT----------------A------TTCTCGCTAGGGGAGA-----CCCATTGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAAT-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................TTTCGATCTGAACAGTCCC---GAGGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GGTGA-AATGTGGAAAGCG------------G.......................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATTGGAAACACGTGGGTCAGG---------C.............................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................GCTTATGCAAACG-GA----------------TGG............................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GAACAGTCCC---GAGGAGCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAAACACGTGGGTC..........................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000
......................................GAACAGTCCC---GAGGAGCACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAACACGTGGGTCAGG---------C.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................GATCTGAACAGTCCC---GAGGAGCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AGCACAGTAATGCTAATTG------CTC..........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAACACGTGGGTCAGG---------CGTCGGT.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GAAC------------GCTAGTTTCGATCTGAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CCGCAAGAAC------------GCTAGTTTCGATCTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTCAGG---------CGTCGGTTATCGGCTC..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................GGGTGCTTATGCAAACG-GA----------------TGGCACA........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGTGGGTCAGG---------CGTC..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GCTAATTG------CTCCCGAGCAAG.................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................TTTTATCGCAAGA-------A----TCCGTGG....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........GAAC------------GCTAGTTTCGATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AAGAAC------------GCTAGTTTCGATCTGAACAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........C------------GCTAGTTTCGATCTGAACAGTCCC---GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TAGTTTCGATCTGAACAGTCCC---GAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TTCTCGCTAGGGGAGA-----CCCATTGGA......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
......................................................GAGCACAAAAAGTAAGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CAGTCCC---GAGGAGCACAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CGCGGA-----CTG----G-----------------GGTT-----CAAGACCCTCT..........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GACGGGGGAA--AACGCGGA-----CTG----G-----------------G.............................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTCTT----------------A------TTCTCGCTAGGGGAGA-----...............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
......................................................................................................................................................CAAACG-GA----------------TGGCACATGGTGA-.................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CCCATTGGAAACACGTG..............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.........AAC------------GCTAGTTTCGATCTGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......................................GAACAGTCCC---GAGGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CTGAACAGTCCC---GAGGAGCACAAAAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AGTCCC---GAGGAGCACAAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................ATTTTATCGCAAGA-------A----TCCG.......................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
........................................................GCACAAAAAGTAAGAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................A-------A----TCCGTGGCGA--------CCTAGCACAGTAATGC.........................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTCTT----------------A------TTCTCGCTAGGGGA......................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................AACAGTCCC---GAGGAGCACAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGAAACACGTGGGTCAGG---------..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................TTTCGATCTGAACAGTCCC---GAGGAGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................ACAGTCCC---GAGGAGCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CCCATTGGAAACACGTGG.............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
........GAAC------------GCTAGTTTCGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................CAGTCCC---GAGGAGCACAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........GAAC------------GCTAGTTTCGATTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGCCGCAAGAAC------------GCCAGTTTCGATCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAATGCCA--------------------TGCTCATCATATATACCCATACCCG---------AATCTT--GGGTGCTTATGCAAACG-GA----------------TGGCACATGGTGA-AATGTGGAAAGCG------------GGAAAAGTGACGGGGGAA--AATGC----GGGGCTG----G-----------------GGTT-----CAAGACCCTCGTCTTATCG-CGCTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACAGTAATGCTAATTG------CTCCCGAGCAAGTA---------------GTCTT----------------A------TTCTCGCTAG--GAGA-----CCTATGGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAATTTAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................TTCGATCTGAACAGTCCC---GAGGAGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300300000000000000
.....................................TGAACAGTCCC---GAGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00202000000000000000
................................CGATCTGAACAGTCCC---GAGGAGCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000000002000
..................................ATCTGAACAGTCCC---GAGGAGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000010000000
.....................................TGAACAGTCCC---GAGGAGCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
..............................TTCGATCTGAACAGTCCC---GAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
...............................TCGATCTGAACAGTCCC---GAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
droSec2
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTATCG-CGCTGA-C----ATTTTATCGCAAGA-------A----TCCGTGGCGA--------CCTAGCACAGTAATGCTAATTG------CTCCCGAGCAAGTA---------------GTCTT----------------A------TTCTCGCTAG--GAGA-----CCCATGGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAAT-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GGCCGCAGGAAC------------GCCAGTTTCGACCTGAACAGTCCC---GAGGAGCACAAAAAGTAAGAATCCCA--------------------T-------------GC-------CGAAACCGAAAAATCTT--GGGTGCTTATGCAAACG-GT----------------CGGCACATGGTGA-AATGTGGAAAGCG------------GGAAAAGTGGCGGGGGAA--AACGTGGA-----ATG----GGTGAAATGGGTGGAATGAGTT-----CAAGACCCTCGTCTTATC-----TGA-C----ATTTTGTCGTAAGA-------A----TCCGCGGCGA--------CCTAGCACAGTAATGCTAATTG------CTCCCGAGCAAACA---------------GTCTT----------------A------TTCTCCCTAG--GAGA-----CCCATTGGAAACACGTGGGTCAGG---------CGTCGGTTATCGGCTCCATTTTAATTTAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................TTTCGACCTGAACAGTCCC---GAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100100000000
...........................................................................................................................................................G-GT----------------CGGCACATGGTGA-AATGTGGAAAGC.....................................................................................................................................................................................................................................................................................................................................2820.50100100000000
.............................TTTCGACCTGAACAGTCCC---GAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50110000000000
.................................................................................................................................................................................................................................................................................................................................GTAAGA-------A----TCCGCGGCGA--------CCT......................................................................................................................................................................2020.50101000000000
...CGCAGGAAC------------GCCAGTTTCGACCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100100000000
.................................GACCTGAACAGTCCC---GAGGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
droEre2
GGTCGCAGGAAC------------GCCAGTTTCGACCTGAACACTCCC---GAGGAGCACAAAAAGTAAGAATGCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................GACCTGAACACTCCC---GAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010

Generated: 05/18/2015 at 07:35 AM