dwi_3606

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGGAAAACCCTGTGATACTTTTTTAAAATTTTTTGGTCATCGCTAAAGAACAATACAACTAAAATATAGAAGGAAAAGAGAAAACGAAAAACTACTAGCGGTAAAAGGGGTTTTCCAACTGGCTTAGGTTTATTATTTGTACATTTATTAATTTTATTATTTTTTTAAGAGGATAATATAAATTATTTTCACTCTCAACAGAATCACCACTTTGACACCAAAGCTGACCAAACAGATGCGACTGTTGGTCG **********************************************************************************....(((((...((((((....(((....))).))).)))..))))).........*************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V118 embryo	V117 male body	M045 female body
.................................................................................................................................................................................................................................GACCAAACAGATGCGACT........	18	0	1	1.00	1	1	0	0
....................................................................................CGAAAAACTACTAGCGGTAAAAGGG..............................................................................................................................................	25	0	1	1.00	1	0	1	0
.................................................................................................................TCCAACTGGCTTAGGTTTATTATTTGT...............................................................................................................	27	0	1	1.00	1	1	0	0
.....................................................................................................TAAAAGGGGTTTTCCAACTGGCTTAG............................................................................................................................	26	0	1	1.00	1	0	0	1
.....................................................TACAACTAAAATATAGAAGGAAAAGA............................................................................................................................................................................	26	0	14	0.07	1	0	1	0
..............................................................................................................................................................ATTTTTTTACGAGGACAAT..........................................................................	19	2	16	0.06	1	1	0	0
.......................................................................................................................................................................................................................TACCAAACCTGACCAAAC..................	18	2	20	0.05	1	0	0	1

ACCTTTTGGGACACTATGAAAAAATTTTAAAAAACCAGTAGCGATTTCTTGTTATGTTGATTTTATATCTTCCTTTTCTCTTTTGCTTTTTGATGATCGCCATTTTCCCCAAAAGGTTGACCGAATCCAAATAATAAACATGTAAATAATTAAAATAATAAAAAAATTCTCCTATTATATTTAATAAAAGTGAGAGTTGTCTTAGTGGTGAAACTGTGGTTTCGACTGGTTTGTCTACGCTGACAACCAGC *************************************************************************************************************....(((((...((((((....(((....))).))).)))..))))).........**********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V117 male body	M045 female body
.....................................................................................................................................................................................TAATAAAAGTGGGAGTGGT...................................................	19	2	3	0.33	1	1	0
.......................................................................................................TTTCCCCGAAAGCTTGAC..................................................................................................................................	18	2	6	0.17	1	0	1
....................................................................................................................................................................................TTAATAAAAGTGGGAGTGGTG..................................................	21	3	12	0.08	1	0	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004949:1069534-1069784 -	dwi_3606	TGGAAAA---------CC---------------------------------CTGTGATACTT-------------------TTTTAAAATTT------------------TTTGGTC-ATCGCTAA-AGAACAATACAACTAAAA---TATAGAAGGAAAAGAGAAAACGAAAAACTACTAGCGG---------TAAAAGGGGTTTTCCAAC-----TGGCTTAG------------------------GTTTA-TTATTTGTACATTTATTA----------------A-----------TT-----------------------------------TTATTATTTTTTTAAGAG----------------------------------------------GATAATATAAA---------------------------------------------------------------------------------------------------------------------T-------------------TATTTTCACTCTCAACAGAATCACCACTTTGACACCAAAGCTGACCAAACAGATGCGACTGTTGGTCG
droVir3	scaffold_12970:843717-843880 +		TTTAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATGTAAT--TTTT-----------------------------------------------------------------------------------------------------------------------TAT-------ATTTGAAATTATTAATTAAATTAT------T-ATTTTTAAGTAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAAAGTGCAAATTTGTTGTTTTCAAACATACATTTAATTAATTT----TTATTTTTTTTA-------------------------------------ATTTTA---TTATTTTT-------------------------------------------------------------------------------T
droMoj3	scaffold_6496:5874722-5874915 -		TACTTTT----------------------------------------------------------------------------TAAGTATAT------------------TGTGATG-ATTGCTTT-AAAATAATTATATGT---------ATAAAAAAAATAA----AAATAAAAATAAAATAA---------AATAAAATAAAATTAATA-----AAAATAAA------------------------ATAAA-AATAAAATAATTCAATAA----------------A-----------CTAATATATAAATTAATTATAGATTTTTCGATA----ATATTTTTTTTT-----------------------------------------------------------------T-----------------------------------------------------------------------AACAG----------------------------------------------AGAA-AAATAAAAATAA--------------------------------------------------------------T
droGri2	scaffold_14853:2097333-2097445 +		TATAAAA---------TG---------------------------------ATATAA---------------------------------------------------------------------------------------A---TATGATAAAAAATGTAAATAAAAGGAATAATTAGTGT---------TAGTTCCGGCTTTACAGC-----CTGATAAT------------------------TATTA-TTATAAATAT---TA-------------------T-----------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------TATTATTATTAT-------------------------------------------------------------------------------T
dp5	XL_group3b:354302-354393 -		AAAGAGAAA--A------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTGACACCCAGCGA---------AAAAAATTGTTTTCCATC-----TTAATAAA------------------------GTATA-TTATTAATAAATAAATAC----------------A-----------TT-----------------------------------TTTTTGCTAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droPer2	scaffold_1138:681-751 -		TTAAAAT----------------------------------------------------------------------------------T-T------------------TTTAATTCATAACAG-ACACAAAATAA-AATAAAA---TAAAATAAAAAAAAAGAGAAAAAAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droAna3	scaffold_13337:4330469-4330564 +		TTAGTGA----------------------------------------------------------------------------------T--TTTT----------------------------------------------------------------------------------------------------------------TATGA------------------------------------------------TATAAATAT-------------------ATAT--------TT-----------------------------------TATTTATT-TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAATCACCACTCTGACGCCCAAACTCACAAAACAGGCCAGGGTTATGGTGG
droBip1	scf7180000392902:34764-34922 -		GCTAAAAAA--A------------------------------------------------------------------------------------------------------------------------AATTCAACTAAAA---TGCAAAAAAAAAATACAAATCGTAA--AC---AACAATGAACAATTCAAA----------------------------------------------------T---C-----------------------------------------------------------------------------------------------------AAATCTTATTATATAGA-CAT-TACTAGACATTATATGTAGTTAAAAATAATACAAA-------------------------------------------------------------------------------TTCAAGCGAAATTTTT----------TTAAAATCA---ACAAAAAC-------------------------------------------------------------------------------A
droKik1	scf7180000302408:270969-271100 -		TTGCTAAGCAATAACGTGATCAAGCTACGTAAGGTCACGTAATATTATAATGAAAGA--CAT---------------------------T--TTAT--------------------------------------------------------------------------------------------------------TAT-TATTTTA---------------------------------------TTTA-TTTCTTGTTTATTTTTCA----------------A-----------TT-----------------------------------CAATAATTATTGTAAAAT----------------------------------------------GAAAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCA
droFic1	scf7180000449635:2885-3025 -		AAAAAAAAA--TAA---------------------------------------------------------------------------------------------------------------------------ATAAAAAA---TGCGAAATAAAAACTAAAAACTAGAAAATAAAAAAGG---------TAAAAAAATTT-----------------------TTAA-----------------GT---T-----------------------------------------------------------------------------------------------------AAACCGTTTTATGTAAAACATGTACTAAATGTACTAAAAGCCTAAAAATAATATAAA---------------------------------------------------------------------------------------------------------------------ATATATAC-------------------------------------------------------------------------------A
droEle1	scf7180000491199:1569850-1570034 +		GGGAAAA---------TT---------------------------------CTGGGATTCTTATTTAAAATTTTAATA----------------------------------TGTTT-TTATT----------------------------------------------------------------------------------------T-----CCAATTCA------------------------ATTCA-TTTTTGGTCGATAAAAGCAATTATCCAAAATATTGGTTT-----------TAATAG---T-----------------------------------------------------------------------------------------------------------------------------------CA----AA------AATCTTTT----TATTTTTCCATCAAT-----TTTTCTTATTACATTTTTAAGACTAT------------TTTTTAGATTCGATTAACAGAACAA--------------------------------------------------------------C
droRho1	scf7180000761431:477-682 -		GGGAAAA---------TC---------------------------------CTACGGTTCTT-------------------TTTAGATTCTC------------------TTTGCTT-ATGTCTCA-CACATTGTTCAATCAACA---ATTCCT-AGAAAAAAAAATTCCGGAAATTATT-----------------------------------------------------------------------------TT--TTGTGGACAAAAAAGTCATTAGCAT------------------------------------------------------------------------------------------------AAGTGT-------------------------------------------CCTACTTACTAATTTCG----TA------CACCTTTCAAAATTGTGATA---CATT-----TTTTGCTACCATTTTTTTAACAGTGT------------ATTAAAAG-------------------------------------------------------------------------------T
droBia1	scf7180000297859:2021-2128 +		ACAGAGGGA--AAG--AA---------------------------------AAGGAAATTATATTGAGCCATCTGACATCTTTTTTTAAT--TTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTAAGAATTTATTA----------------T-----------TT-----------------------------------TTATTATTTTTT-----------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------ATTAAGAAATGGGATAA--------------------------------------------------------------T
droTak1	scf7180000415630:225731-225879 -		GTCATAC----------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------TTTATATAATTTAC-------ATTTTGAACAATTTAATAAATCTA------G--TGGTTATAGAAAATTAAATAATTAAAAAAGTATATT-----------TAAGCT---TAATTTTATAGTCCCCAATTAATTGTTTTATTTTGT-----------------------------------------------------------------T-----------------------------------------------------------------------AATAA----------------------------------------------AATAAAATAAAAAATTT--------------------------------------------------------------T
droEug1	scf7180000409231:82278-82427 +		AGCACTG-----------------------------------------------GGAAAAGT-------------------TTTTAAAAT---------------------------CAAAAAAG-GA----ATTACATTTAAAAACCTATAAAAAGGTATATGAGATG---C--AT---AGAGATGCTTTCTTCAAATGAGACTTACTAGC-----CAG-----------------------------GTATT-TTGAGTATATATTTATTA----------------A-----------TT-----------------------------------TGAATAATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------------------------------------------------------------------A
dm3	chr3L:21723724-21723811 -		TATATTT-------------------------------------------------A-----------------------------T---------------------------------------------------------------------------------------------------------------------TATTTTTT-----TTATTCCT------------------------GTGTA-AAAATAATA-------------------------------------TA-----------------------------------CAATTATT-TTGTA----TAAGCACTCCCT---------------------------------------------TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAAATCTAACCACAC-----------------A
droSim2	3l:14419892-14420013 -		AAAGTAG----------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------TTCCCATCTCTCAT-------TGTTGGA-----------------------ATAT----TGCATATTTA----------------A--CTATTTT--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATTTCA---TC---------------------------TATATTTAGAATATCAGCACTGACGCCCAAATTGACCAAGCAGGCCAGAGTAATGGTGG
droSec2	scaffold_1307:3614-3678 +		GGGGTTT-------------------------------------------------A-----------------------------G----------------------------------------------------------------------------------------------------------------------------------T-------TGTTTAC-----------------GT----------TTTTCCTTTTTA----------------A--TTTTATTAATT-----------------------------------CTTTTGGCTTGT-----------------------------------------------------------------G-----------------------------------------------------------------------GAGAG----------------------------------------------AAT----------------------------------------------------------------------------A
droYak3	2L:21053466-21053605 +		ATTTTATTA--A---------------------------------------------------------------------------AATTA------------------TATGATC-ATATATAAATGCCACACGA-ACCGAAC---AGTAAACAGAAAAGAAATAATAAGAAATCATT-------------------------GTTGTTG-----TTAAACAT------------------------ATGTA-TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCATAT----TTATTATACACCAGT-----TT--------------------------------TTTTTTTATTAT-------------------------------------------------------------------------------T
droEre2	scaffold_4512:528975-529069 -		TTGAATG-------------------------------------------------ATTCTT-------------------TTTTAAAGCTA--TCCATTGTAGACCTTCAAAG-------------TTTACAATACTACTAAAA---TATATAAAAAAATTAAAAAAAAATATATTAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

TGGAAAA---------CC---------------------------------CTGTGATACTT-------------------TTTTAAAATTT------------------TTTGGTC-ATCGCTAA-AGAACAATACAACTAAAA---TATAGAAGGAAAAGAGAAAACGAAAAACTACTAGCGG---------TAAAAGGGGTTTTCCAAC-----TGGCTTAG------------------------GTTTA-TTATTTGTACATTTATTA----------------A-----------TT-----------------------------------TTATTATTTTTTTAAGAG----------------------------------------------GATAATATAAA---------------------------------------------------------------------------------------------------------------------T-------------------TATTTTCACTCTCAACAGAATCACCACTTTGACACCAAAGCTGACCAAACAGATGCGACTGTTGGTCG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAACAGATGCGACT........	18	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................CGAAAAACTACTAGCGG---------TAAAAGGG................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................TCCAAC-----TGGCTTAG------------------------GTTTA-TTATTTGT...................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................TAAAAGGGGTTTTCCAAC-----TGGCTTAG------------------------.................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
......................................................................................................................................TACAACTAAAA---TATAGAAGGAAAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	14	0.07	1	0	0	1	0	0

droVir3

TTTAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATGTAAT--TTTT-----------------------------------------------------------------------------------------------------------------------TAT-------ATTTGAAATTATTAATTAAATTAT------T-ATTTTTAAGTAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAAAGTGCAAATTTGTTGTTTTCAAACATACATTTAATTAATTT----TTATTTTTTTTA-------------------------------------ATTTTA---TTATTTTT-------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAAATTTGT..................................................................................................................................................................................	26	20	4.30	86	0	0	19	0	3	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	2	40	9	1	0	3	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAAATTTG...................................................................................................................................................................................	25	20	3.10	62	0	0	11	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	16	12	0	0	0	0	0	0	0	10	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTTAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATGTAAT--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTTAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTTAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATGTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATGTAAT--T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAAATTTGTTG................................................................................................................................................................................	28	20	1.55	31	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	2	1	0	0	0	7	1	8	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAATAAAAGTGCAAATTTGTTG................................................................................................................................................................................	26	20	1.45	29	0	0	8	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	6	0	0	0	0	0	3	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAAATTTGTT.................................................................................................................................................................................	27	20	1.20	24	0	0	1	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	1	0	8	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATGTAAA--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATGTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATGTAAT--T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACATACATTTAATTAATTT----TTATT.............................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TTTAAGT---------CG---------------------------------ATGGAAA--------------------TATTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAAATTTGTC.................................................................................................................................................................................	27	20	0.75	15	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	3	2	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAA...............................................................................................................................................................................................	27	20	0.65	13	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	0	0	0	0	3	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAATAAAAGTGCAAATTTGTT.................................................................................................................................................................................	25	20	0.60	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0	1	0	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AAGTAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAA...................................................................................................................................................................................................	26	20	0.55	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AAGTAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGA.....................................................................................................................................................................................................	24	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAAA.......................................................................................................................................................................................	21	20	0.45	9	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	1	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAATAAAAGTGCAAATTTGTTGT...............................................................................................................................................................................	27	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAAATTT....................................................................................................................................................................................	24	20	0.40	8	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................GAAATTATTAATTAAATTAT------T-ATTT.....................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTAAGTAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGA.....................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGCAAATTTGTTGTTTTCAA.........................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAAAGTGC..........................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAAAGTGCAAATTTGT..................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAATAAAAGTGCAAATTTGTTGTC..............................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAAAGTGCAAATTTGTTGTTTT............................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................T---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAAAGT............................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGCAAATTTGTTGTTT.............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAAAGTG...........................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAA................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAAAGTGC..........................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAAATTTGTTA................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAAAA......................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCA.........................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAAAGTGCAAATT.....................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAAATTTGTCA................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAATAAAAGTGCAAATTTGT..................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................T---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATA.................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGCAAATTTGTTGTTTT............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAA........................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGG......................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAA...............................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTAAGTAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGG......................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATG.................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TAAGTAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAA....................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTTGAAATTATTAATTAAATTAT------T-AT.......................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................T---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAAAG.............................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGAAATAAAAGTGCAATG......................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAAAGTGCAAATTTGTTGTT..............................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAAAAGTGCAAATTTGTTGTTT.............................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAAAGTGCAAATA.....................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TAAGTAAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGA.....................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TATTAATTAAATTAT------T-ATTT.....................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................AAT---ACAAAATAA-----------------------------------------------------------------------------------------------------------------------------------ATTAAGGAAATAAAAG.............................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TTGAAATTATTAATTAAATTAT------T-ATTT.....................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTTGAAATTATTAATTAAATTAT------T-ATTT.....................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAATAAAAGTGCAAATTTGTTGTT..............................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTGCAAATTTGTTG................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TACTTTT----------------------------------------------------------------------------TAAGTATAT------------------TGTGATG-ATTGCTTT-AAAATAATTATATGT---------ATAAAAAAAATAA----AAATAAAAATAAAATAA---------AATAAAATAAAATTAATA-----AAAATAAA------------------------ATAAA-AATAAAATAATTCAATAA----------------A-----------CTAATATATAAATTAATTATAGATTTTTCGATA----ATATTTTTTTTT-----------------------------------------------------------------T-----------------------------------------------------------------------AACAG----------------------------------------------AGAA-AAATAAAAATAA--------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TATAAAA---------TG---------------------------------ATATAA---------------------------------------------------------------------------------------A---TATGATAAAAAATGTAAATAAAAGGAATAATTAGTGT---------TAGTTCCGGCTTTACAGC-----CTGATAAT------------------------TATTA-TTATAAATAT---TA-------------------T-----------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------------------------------TATTATTATTAT-------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

AAAGAGAAA--A------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTGACACCCAGCGA---------AAAAAATTGTTTTCCATC-----TTAATAAA------------------------GTATA-TTATTAATAAATAAATAC----------------A-----------TT-----------------------------------TTTTTGCTAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

TTAAAAT----------------------------------------------------------------------------------T-T------------------TTTAATTCATAACAG-ACACAAAATAA-AATAAAA---TAAAATAAAAAAAAAGAGAAAAAAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................TTTAATTCATAACAG-ACACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droAna3

TTAGTGA----------------------------------------------------------------------------------T--TTTT----------------------------------------------------------------------------------------------------------------TATGA------------------------------------------------TATAAATAT-------------------ATAT--------TT-----------------------------------TATTTATT-TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAATCACCACTCTGACGCCCAAACTCACAAAACAGGCCAGGGTTATGGTGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCACTCTGACGCCCAAA............................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGGCCAGGGTTATGGTGG	22	1	1.00	1	0	0	0	0	0	1

droBip1

GCTAAAAAA--A------------------------------------------------------------------------------------------------------------------------AATTCAACTAAAA---TGCAAAAAAAAAATACAAATCGTAA--AC---AACAATGAACAATTCAAA----------------------------------------------------T---C-----------------------------------------------------------------------------------------------------AAATCTTATTATATAGA-CAT-TACTAGACATTATATGTAGTTAAAAATAATACAAA-------------------------------------------------------------------------------TTCAAGCGAAATTTTT----------TTAAAATCA---ACAAAAAC-------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGCTAAGCAATAACGTGATCAAGCTACGTAAGGTCACGTAATATTATAATGAAAGA--CAT---------------------------T--TTAT--------------------------------------------------------------------------------------------------------TAT-TATTTTA---------------------------------------TTTA-TTTCTTGTTTATTTTTCA----------------A-----------TT-----------------------------------CAATAATTATTGTAAAAT----------------------------------------------GAAAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAAAAAAA--TAA---------------------------------------------------------------------------------------------------------------------------ATAAAAAA---TGCGAAATAAAAACTAAAAACTAGAAAATAAAAAAGG---------TAAAAAAATTT-----------------------TTAA-----------------GT---T-----------------------------------------------------------------------------------------------------AAACCGTTTTATGTAAAACATGTACTAAATGTACTAAAAGCCTAAAAATAATATAAA---------------------------------------------------------------------------------------------------------------------ATATATAC-------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGGAAAA---------TT---------------------------------CTGGGATTCTTATTTAAAATTTTAATA----------------------------------TGTTT-TTATT----------------------------------------------------------------------------------------T-----CCAATTCA------------------------ATTCA-TTTTTGGTCGATAAAAGCAATTATCCAAAATATTGGTTT-----------TAATAG---T-----------------------------------------------------------------------------------------------------------------------------------CA----AA------AATCTTTT----TATTTTTCCATCAAT-----TTTTCTTATTACATTTTTAAGACTAT------------TTTTTAGATTCGATTAACAGAACAA--------------------------------------------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGGAAAA---------TC---------------------------------CTACGGTTCTT-------------------TTTAGATTCTC------------------TTTGCTT-ATGTCTCA-CACATTGTTCAATCAACA---ATTCCT-AGAAAAAAAAATTCCGGAAATTATT-----------------------------------------------------------------------------TT--TTGTGGACAAAAAAGTCATTAGCAT------------------------------------------------------------------------------------------------AAGTGT-------------------------------------------CCTACTTACTAATTTCG----TA------CACCTTTCAAAATTGTGATA---CATT-----TTTTGCTACCATTTTTTTAACAGTGT------------ATTAAAAG-------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACAGAGGGA--AAG--AA---------------------------------AAGGAAATTATATTGAGCCATCTGACATCTTTTTTTAAT--TTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTAAGAATTTATTA----------------T-----------TT-----------------------------------TTATTATTTTTT-----------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------ATTAAGAAATGGGATAA--------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTCATAC----------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------TTTATATAATTTAC-------ATTTTGAACAATTTAATAAATCTA------G--TGGTTATAGAAAATTAAATAATTAAAAAAGTATATT-----------TAAGCT---TAATTTTATAGTCCCCAATTAATTGTTTTATTTTGT-----------------------------------------------------------------T-----------------------------------------------------------------------AATAA----------------------------------------------AATAAAATAAAAAATTT--------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGCACTG-----------------------------------------------GGAAAAGT-------------------TTTTAAAAT---------------------------CAAAAAAG-GA----ATTACATTTAAAAACCTATAAAAAGGTATATGAGATG---C--AT---AGAGATGCTTTCTTCAAATGAGACTTACTAGC-----CAG-----------------------------GTATT-TTGAGTATATATTTATTA----------------A-----------TT-----------------------------------TGAATAATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

dm3

TATATTT-------------------------------------------------A-----------------------------T---------------------------------------------------------------------------------------------------------------------TATTTTTT-----TTATTCCT------------------------GTGTA-AAAATAATA-------------------------------------TA-----------------------------------CAATTATT-TTGTA----TAAGCACTCCCT---------------------------------------------TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAAATCTAACCACAC-----------------A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................T-TTGTA----TAAGCACTCCCT---------------------------------------------TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAAATC...........................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................A-----------------------------T---------------------------------------------------------------------------------------------------------------------TATTTTTT-----TTATTCCT------------------------GTG..............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATTT-------------------------------------------------A-----------------------------T---------------------------------------------------------------------------------------------------------------------TATTTTTT-----TTATTA...........................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAAGTAG----------------------------------------------------------------------------------G------------------------------------------------------------------------------------------------------------------TTCCCATCTCTCAT-------TGTTGGA-----------------------ATAT----TGCATATTTA----------------A--CTATTTT--T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTATTTCA---TC---------------------------TATATTTAGAATATCAGCACTGACGCCCAAATTGACCAAGCAGGCCAGAGTAATGGTGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGCCCAAATTGACCAAGCAGGCCAGA..........	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGGGTTT-------------------------------------------------A-----------------------------G----------------------------------------------------------------------------------------------------------------------------------T-------TGTTTAC-----------------GT----------TTTTCCTTTTTA----------------A--TTTTATTAATT-----------------------------------CTTTTGGCTTGT-----------------------------------------------------------------G-----------------------------------------------------------------------GAGAG----------------------------------------------AAT----------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......T-------------------------------------------------A-----------------------------G----------------------------------------------------------------------------------------------------------------------------------T-------TGTTTAC-----------------GT----------TTTTCCTTTTT..........................................................................................................................................................................................................................................................................................................................................................	24	10	0.20	2	0	0	2	0
..........................................................................................................................................................................................................................................................................................................TAATT-----------------------------------CTTTTGGCTTGT-----------------------------------------------------------------G-----------------------------------------------------------------------GAGAG----------------------------------------------A...............................................................................	24	12	0.17	2	0	0	1	1
......................................................................................................................................................................................................................................................................................................TTATTAATT-----------------------------------CTTTTGGCTTGT-----------------------------------------------------------------G-----------------------------------------------------------------------GAGA...............................................................................................................................	26	12	0.17	2	1	0	1	0
.......................................................................................................................................................................................................................................................................................................TATTAATT-----------------------------------CTTTTGGCTTGT-----------------------------------------------------------------G-----------------------------------------------------------------------GAG................................................................................................................................	24	12	0.17	2	0	0	2	0
......T-------------------------------------------------A-----------------------------G----------------------------------------------------------------------------------------------------------------------------------T-------TGTTTAC-----------------GT----------TTTTCCTTTTTA----------------A--TT....................................................................................................................................................................................................................................................................................................................................	28	10	0.10	1	1	0	0	0
....................................................................................................................................................................................................................................TTAC-----------------GT----------TTTTCCTTTTTA----------------A--TTTTAT................................................................................................................................................................................................................................................................................................................................	25	10	0.10	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................TTTATTAATT-----------------------------------CTTTTGGCTTGT-----------------------------------------------------------------G-----------------------------------------------------------------------G..................................................................................................................................	24	12	0.08	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................TTAATT-----------------------------------CTTTTGGCTTGT-----------------------------------------------------------------G-----------------------------------------------------------------------GAGAG----------------------------------------------................................................................................	24	12	0.08	1	1	0	0	0
........................................................................................................................................................................................................................................................................................................ATTAATT-----------------------------------CTTTTGGCTTGT-----------------------------------------------------------------G-----------------------------------------------------------------------GAGAG----------------------------------------------AA..............................................................................	27	12	0.08	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................TTTTATTAATT-----------------------------------CTTTTGGCTTGT-----------------------------------------------------------------G-----------------------------------------------------------------------GA.................................................................................................................................	26	12	0.08	1	1	0	0	0
..........................................................................................................................................................................................................................................................................................................TAATT-----------------------------------CTTTTGGCTTGT-----------------------------------------------------------------G-----------------------------------------------------------------------GAGAG----------------------------------------------................................................................................	23	12	0.08	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................TTTTATTAATT-----------------------------------CTTTTGGCTTGT-----------------------------------------------------------------G-----------------------------------------------------------------------GAG................................................................................................................................	27	12	0.08	1	1	0	0	0

droYak3

ATTTTATTA--A---------------------------------------------------------------------------AATTA------------------TATGATC-ATATATAAATGCCACACGA-ACCGAAC---AGTAAACAGAAAAGAAATAATAAGAAATCATT-------------------------GTTGTTG-----TTAAACAT------------------------ATGTA-TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCATAT----TTATTATACACCAGT-----TT--------------------------------TTTTTTTATTAT-------------------------------------------------------------------------------T

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TTGAATG-------------------------------------------------ATTCTT-------------------TTTTAAAGCTA--TCCATTGTAGACCTTCAAAG-------------TTTACAATACTACTAAAA---TATATAAAAAAATTAAAAAAAAATATATTAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dwi_3606

scf2_1100000004949:1069584-1069734 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-5.3	-5.2	-5.2