ID:

dwi_3603

 Coordinate:

scf2_1100000004949:859704-859854 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.6 -23.6 -23.6

Flybase annnotation

CDS [Dwil\GK10540-cds]; exon [dwil_GLEANR_10730:4]; intron [Dwil\GK10540-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2_DVirRCHelitron-
mature
  1. scf2_1100000001718:2230-2252 -
  2. scf2_1100000004514:2108278-2108300 +
  3. scf2_1100000004816:56314-56336 +
  4. scf2_1100000004816:58653-58675 +
  5. scf2_1100000004849:66788-66810 -
  6. scf2_1100000004884:251884-251906 +
  7. scf2_1100000004943:2775034-2775056 -
  8. scf2_1100000004943:8955587-8955609 +
  9. scf2_1100000004946:220902-220924 -
  10. scf2_1100000004909:11567254-11567276 +
  11. scf2_1100000004949:774142-774164 +
  12. dwi_3603  scf2_1100000004949:859782-859804 -
  13. scf2_1100000004954:2100902-2100924 -
  14. scf2_1100000004958:575750-575772 +
  15. scf2_1100000004958:2237328-2237350 -
  16. scf2_1100000004958:2242659-2242681 +
  17. scf2_1100000004963:701653-701675 +
  18. scf2_1100000004967:529936-529958 -
  19. scf2_1100000004968:355947-355969 +
  20. scf2_1100000004968:2591708-2591730 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTCCCACTCTGTGAGGGAAAGTTGACATCATTAGATTTCAGTTTGTTTAAGTGAGTACAATTGTATATGAAATAAGTCAATACTTTTTATACCCTTGCAAAAATGGTATATTAATTTTGGTCAGAAGTGTGCAACGCACAGAAGAAAGCATCTTCGACCATATAAAGTATATATATTCTTGATCAAATAGCCATGTCCGTCCGTCTGGATCAACGCGAACTCCTAGACTGTTGGAGCTACAGGCTTGTATA
**************************************************..........((((((((((((..(((....))))))))))....)))))..((((.((((....((((((((((((((((...))))).(((((.....)))))....(((((.....))))).))).)))))))).....)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020
head
 M045
female body
 V117
male body		 V118
embryo
 V119
head
..............................................................................................................................................................................................................................CTAGACTGTTGGAGCTGCAGG........ 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................TCAAATAGCCATGTCCGTCCGTCTG............................................ 25 0 20 0.35 7 0 7 0 0 0
..............................................................................................................................................................................................................................CTAGACTGTTGGAGCTACAG......... 20 0 10 0.10 1 0 0 1 0 0
.............................................................................................................................................................................................................................CCTAGACTGTTGGAGCTACAG......... 21 0 10 0.10 1 0 1 0 0 0
.............................................................................................................................................................................................................................CCTAGACTGTTGGAGCTACAGT........ 22 1 12 0.08 1 0 1 0 0 0
................................................................................................................................................................................................................ATCAACGTGTATTCCTAGAC....................... 20 3 15 0.07 1 0 1 0 0 0
......................................................................................................................................................................................TCAAATAGCCATGTCCGTCCGTCTGGA.......................................... 27 0 20 0.05 1 0 0 0 1 0
.........TGTGAGGGAAAGTTGAAA................................................................................................................................................................................................................................ 18 1 20 0.05 1 0 0 0 0 1
....................................................................................................AAATGGTATATTAATTTTGGTCA................................................................................................................................ 23 0 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

AAGGGTGAGACACTCCCTTTCAACTGTAGTAATCTAAAGTCAAACAAATTCACTCATGTTAACATATACTTTATTCAGTTATGAAAAATATGGGAACGTTTTTACCATATAATTAAAACCAGTCTTCACACGTTGCGTGTCTTCTTTCGTAGAAGCTGGTATATTTCATATATATAAGAACTAGTTTATCGGTACAGGCAGGCAGACCTAGTTGCGCTTGAGGATCTGACAACCTCGATGTCCGAACATAT
**************************************************..........((((((((((((..(((....))))))))))....)))))..((((.((((....((((((((((((((((...))))).(((((.....)))))....(((((.....))))).))).)))))))).....)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V119
head
 V118
embryo
 M045
female body
 M020
head
 V117
male body
..........................................................................................................................................................................................................................TGAGGATCTGACGACCTCGATG........... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................AGGCAGACCTAGTTGCGCTTG............................... 21 0 20 0.10 2 0 2 0 0 0
......................................................................................................................CCAGTCTTCACACGTTGCGTGT............................................................................................................... 22 0 20 0.10 2 0 0 0 2 0
..................................................................................................................................................................................................CAGGCAGGCAGACCTAGTTGCGCTT................................ 25 0 20 0.10 2 0 2 0 0 0
......................................................................................................................................GCCTTTCTTCTTTCGTCGAAG................................................................................................ 21 3 16 0.06 1 0 0 1 0 0
..........................................................................................TGGGAACGTTTTTACCATATAA........................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................................................TGGCAGACCTAGTTGCGCTTGA.............................. 22 1 20 0.05 1 0 0 0 1 0
..............................................................................................................................................................................................GGTACAGGCAGGCAGACCTAGT....................................... 22 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................ATTTCATATATATAAGAACTA.................................................................... 21 0 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................................................TTATCGGTACAGGCAGGCAGACCT.......................................... 24 0 20 0.05 1 0 0 1 0 0
........................................................................................................CCATATAATTAAAACCAGTC............................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0
.......................................................................................................................................................................................................AGGCAGACCTAGTTGCGCTTGAGGA........................... 25 0 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................................................CGGTACAGGCAGGCAGACCT.......................................... 20 0 20 0.05 1 0 0 0 0 1
......................................................................................................................................................AGAAGCTGGTATATTTCATATATAT............................................................................ 25 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004949:859654-859904 - dwi_3603 TTCCCACTCT--GTGAGGGAAAGT----TGAC---------------ATCATTAG-----------------------------------ATTTCAGT------------------------TTGT-------------------------------------------T-----TAAG------------------------------------TGAG----T------------------AC---AATTG--TA--T----------------------A-TG-----A------------AA------------TAAGTCAATACTT-------------------------TTTATACC--------CTT------------GC--A----AAAATGGTATATTAATTTTGGTC-------AGAAGTGT------GCAACGCACAGAAGAAAGCATCTTCGACCATATAAAGTATAT----ATATTCTTGATCAA-----AT--------------AG----CCATGTCCGTCC----GT--------C----TGGATCAACGCGA-------ACTCCTAGACTGTTGGAGCTACAGGCTTGT--------------------ATA
droVir3 scaffold_13323:3661-3887 - AAAATT----------------AA-------A---------------A-------------------------------------------------------------------------------------------------TTCATT-----AAGTTTTG------------------------------------------------------T----TTTAAATAGTTGTAAAT--AA---AATTA--TA--T----------------------T-AT-----A------------TTA--CGGA-----------TTCACTT-------------------------TTTATACC--------CTG---------------------ATAAGGGTATATTGATCTTGTGCAAAATCCAAATGTAT------GTAACAGGCAGAAGGAAACATCTTCGACCCCAGAAAGAATAT----ATATTCTTAATCAGCAC---------------------------TGTA------------------------TGTATGAACGCAA----GTATCTCAGAATCTATAAGAGCTAGAGACTTG------------------------
droMoj3 scaffold_6680:24094132-24094401 - AGTCGA-------------------------G---------------CACTCTCG-----------------------------------ACTAGAGT------------------------TTTC-------------------------------------------T-----TACT------------------------------------TGCT----TTTAATCGGTTCA---------------------------------------------------------------------------------------AAATATT-------------------------TGTATACC--------CTGAACCCCTTTTCAAT--GGGAAATCAGGGTATAATGGTTTTGT-T-------AAATGTAT------GTAACAGGCAGAAGGAGGCGTAGCAAACCCCATAAAGTATAT----ATATTTTTGATCAGGGCGA-----CGAGTCGATTTAC----CTTTGTCCGTCTATCCGTCCGTCCGTCCGTATGTATGATCGCGT----CGATCTCAGAAGATATAAGAGCTAGAGACTTGA--------------------AAA
droGri2 scaffold_14906:1205206-1205403 - TCGGCT-TGT--ATGAGCAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------TT--------------GT-------------------------ATTATACCCTCAAACCC-------ATTAAAAAT--TGATAAAAAGGGTATAATGATTTTGTAC-------AGAAGTAT------GAAACGGGAAGAAGGAAGCGCTTCCGACACCATAAAGTATAC----ATATTCTTGATCATCTTCTA----------------------------------TTCGTC------------TGTATGAACGCGC----AGATTTCAGAGACTATTTCAACTAGAAACTT-------------------------
dp5 Unknown_singleton_2278:3429-3692 - GATCTC----------------AA-------T---------------AACTTTCAG-TCATAGTGTTGTG-------------------------------------------------------C-------------------------------------------------TAAC------------------------------------TTGGTACACTTGAATGCCTCG-------------------------------------------------------------------------AAA-----------TGCAATT-------------------------TTTATACC--------C-------GATACTCAAAATGAGTATTGGGGTATATTCGATTTGTGGTGAAAATGGATGTGT------GTAATGTCCAGAAGGAATCGTTTCCGACGACATAAAGTATAT----ATATTCTTGATCAGCATCAATAGCCGAGTCGGTTGAG----CCCTGTCTGTCC----GT--------C----CCTATCAGCGCCT----AGTGCTCAAAGACTATAAGAGCTAGAG-----------------------------
droPer2 scaffold_53:326222-326489 + AACATC----------------AA-------T---------------ATCAATAG-----------------------------------ACCTGAGG------------------------TTTT-------------------------------------------A-----AAATTGAT----------------------------------------T------------------AC---TATTT--TT--T----------------------T-TG-----T------------TTC--TAGG-----------TTTAGTT-------------------------TTTATACC--------C-------TATACTCAAAATGAGTATTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGT------GCAACGTCCATAAGGAATCGTTTCCGACCCCATAAAGTATAT----ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAG----CCCTGTCTGTCTGTCCGTC------------CCCTTCAGCGCCT----AGTGCTCAAAGACTATAAGAGCTAGAG-----------------------------
droAna3 scaffold_13258:661233-661519 - TTCAGACAC----------------------------------------------------TGA-----GAAACGAGACGATTGACTCTGATTTCGGA---------------A--CTCTCTTTATTTCAGAAGAATAAC------------------------------------------------------------------------------T----C--------TTAT-------------------ATA-------------------------AGATGCTA------------AA-------TT---------ATACATC-------------------------ATTATACC--------CTT------------GC--AG------AGGGTATTATAATTTTGGTC-------AAAAGTGT------GCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT----ATATTCTTGATCAGGATCACCTCCTGAGTCGATATAA----GCATGTCCGTCTGTCCGTC----TGTC----TGTTTCTACGCAAACTAGTCTCTCAG----TTTTAGAGCTATCGAGTTGAAA---------------------
droBip1 scf7180000394967:7818-8085 + CTTTCACCGC--ATGAGT----AAATGGTTAAGTTGTTAACCATCAG-------------------------------------------------ATGGTCG----------------------------------------------------------------------------------------------------------------TGGG----T------------------TC---GATTC--------------------------------C-----C------------AACAGAAGA-----------AGCTGTT-------------------------TTTATACC--------CTT------------GC--AG------AGGGTATTATAATTTTGGTC-------AAAAGTGA------GCCACGCAGTTAAGGAGACATCTTCGACCATATAAAGTATATGTATATATTCTTGATCAGGATCACCTTCTGAGTTGATACATATAAGCATGTTCG-C------------TGTC----TGTTTCTACGCGAACTACTGTCTCAG----TTTTAAAGCTATTGACTTGA-----------------------
droKik1 scf7180000298822:3735-3990 + TTCTCACTCG--GCAGTA----------------------------------------------------------------------------------------------------------------------TAACCCTGACAAATTTAATCAAATAATG------TTTCT-ACA-------------------------TTC-------------------------TTAT-------------------ATATGT-----------------------------A------------AA-------TTATATATCTTAACTATT-------------------------TTTATACC--------CTT------------GC----------AGGGTATTATAATTTCAGTC-------AGAAGTTT------GCAACGCAGTGAAGGAC------CCGACCCTATAAAGTATAT----ATATTTTTCATCAGCATCAACAGCCGAGTCGATCTAA----CCATGTCCCTC--------------------------------------------AG----TTTTAAAGCTATCCGACTGAAAATTTGCATATAGTCTTCTATA
droFic1 scf7180000454161:10735-10989 - GTGTGT------AAGAGT----GAATATTTAA-----------------------------------------------------------------------------------------------------------------------------AAT-TTG------ATTTT-TAT-------------------------TTGTAA-------------------------A-------------------ATGGGTAAATAA---------------T-G-TGATAAATAAATATTTCTTC------------------------------TCACAATAT--------TTTTTATACC--------CTT------------GC--AGAGCAAAAGGGTATTATAAATTCAGTC-------AGAAGTTT------GCAACGTAGTGAAGGAGACACCTCAGACCCCATAAAGTATAT----ATATTCTTGATCAGCATCAA-----------------------------------------------------------------ACTAGTCACTCAG----TTTTAAAGCTATCTTGCTGAAACTTTCCCAAAAGGTGTGTAGT
droEle1 scf7180000490284:17604-17835 - AGAGAA---------------A---------------------------------------------------TGTGAAAACAAAATCC-------------------------------------------------------------------------CGCTTTGA-----AAATTAATCATGTATTCGTGTATACAT----------------------------------------------------------------------------------------A------------TA--TCAAT-----------CTTTATT-------------------------TTTATACC--------CTT------------GC--AG------AGGGTTTTATAATTTCAGTC-------AGAAGTTT------GCAACGCAGTGAAGGAGACATTTCCAACCCTATAAAGTATAT----ATATTCTTGATCAGCATCACTAGCAGATTCGGTCTAG----ATATATATTTT--TTTGTC----TTTT----TG------------------TTGCAGGTAGT---------------------------------------ACA
droRho1 scf7180000780043:677694-677965 - ATTCTA-------TGACA---------------------------------------------------------------------------------------------------------------------------------AA-----------------------------TTAATTATGT--------------------TATCAG-TTAATATATT--------------T--AATGCCATAA--TA--CAT-----------------------------A------------AA--TAACA-----------AAACATT-------------------------TTTATACC--------CTT------------GC--AG------AGGGTATTATAATTTTGGTC-------AAAAGTGT------GCAACGCAGTGAAGGAGGCATCTCCGACCCTATAAAGTATAT----ATATTCTTGATCAGGATCACCTCCTGAGTTGATATAG----CCATGTCCGTCTGTCCGTC----TGTC----TGTTTCTACGCAAACTAGTCTCTCAG----TTTTAAAGCTATCGAATTGAAACTTTGC------------ACA
droBia1 scf7180000302520:131043-131334 + TTTCTTCTGTTAAAGAAT----GTAGGTTTAAGTAGTTTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATG-----T--TTA----AT------AACTCCCATAGCTGT-GT-----C------------AATTACAGG-----------TCCTATT-------------------------TTTATACC--------CTT------------GC--AG------AGGGTAAAATGATTTCAGTC-------AGAAGTTT------GCAACGCAGTGAAGGAGACGTTTCCGACCCCAAAAAGTATAT----ATATTCTTGATCAGCGTCACTAGACGAGTCGATCTAG----CCATGTCCGTATGTCCGTCTGTCTGTC----CGTTTCTACGCAAACTAGTCTCTCA----CTTTTAAGGCTATTGCGCTGAAAC----------GTCTTCTTTC
droTak1 scf7180000415929:16742-17042 + CCTTTTTTG----TGGCATA--------------------------------------------------------------------------------------------------------------------AAGTCTAAAATCATTTTGTGAAAT-TT------------TAGT----TTT------------------TTCTTA------------------TCCGTTAA--------------------------------------------------------AGAAATG-----------------------------TTTAACTATCATAAAAC--------TATTTATACC--------C-------GTTACTCGT--AGAGTAAAAGGGTATATTGTATTCGTGC-------AAAAGTAT------GTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAACTATAT----ATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAG----CCATGTCCGTCTGTCTGTCCGTCTATCTGTCTGTATGAACGCTG----AGATCTCGGAAACTATAAAAGCTAGAAGATTGA---------------------CA
droEug1 scf7180000405975:7595-7849 + TCTGTGCAGA--AAAGAT----AAGAATCTGAGTATTCTAAAAATAA-------------------------------------------------ATTATTTTAAGTTCGAAGGC-----------------------------------------------------------------------------------------------------------------------------------GTTGG--TA--T-------------------------------C------------CAAAAAAGT-----------AAACATT-------------------------TTTATACC--------C-------GTTTTTCGT----------TGAGTATGTTAGATTCGTTG-------AAAAGTAT------GTAACAGGTAGAAGGAATCGTATCCGACTCTATAAAGTATAT----ATATTCTTGATCAGGATCAATAGCGAAGTCGATTAAG----CCAT--------------------------------GAAAGCTG----AGGTCTCAGAAACTATAGGAGATACGAAGTTG------------------------
dm3 chr2R:606298-606561 - TTTACACCAT------------------------------------------T-----------------------------------------------------------------------------------AATATTAAGTTCATT-----AA----T---------------------------------------------------------------------------ATTTAA-----A--CTT----AT------AAATAAAAAAAAGTT-GC-----C------------ATCTGGAAT-----------TGGTATT-------------------------ATTATACC--------C-------GTTACTCGT--AGAGTAAAAGGGTATACTAGATTCTTTT-------AAAAGTAT------GTTAAAGGCAGAAGTAAGCGTTTCCGACTATATAAAGGATAT----ATATTATTGATCAGGGTCAATAGCCGAGTTTATCTAG----CCATGTCCGTA------------------------TGAACGTCG----AGATCTTAGGAACTATAAAAGCTAGAAGCATAC--------------------ATG
droSim2 4:811167-811402 - GGGATA----------------AG----TGAC---------------AT-TTTCAATTGACAGTGTTATGAAACGAGGAGAT-----CC--------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----------------------------------T----------------T--A-------------------------------TTAT-------CCTATATTTGTATACC--------C-------GTTACTCGT--AGAGTAAAAAGGTACTCTAGACGCGTTG-------AAAAGTGTTACATAGAAACACAG---AGAAAGCGTTTCCGACTATATAAAGTATAT----ATATTCTTGATCAGGATCAATAGCCAAGTCGATCTGG----CCC----------------------------------------------GATCTCAGGAACTATAAAAGCTAAAAGGTTG------------------------
droSec2 scaffold_18:128794-129023 + AAGTTT------------------------ACGT-----------AAATCATTTG-----------------------------------ATTTCAGG-----------------CGCCGTTATTT----------------------------------------------------------------------------------------------------------TTCA-------------------AAG---------------------------------------------------CG------------AAAACTT-------------------------TTTATTCC--------C-------GTTACTCGT--AGAGTGAAAGGGTATACTAGATTCAATG-------AAAAGTAT------GTATCAGGCAGAAGGATGCGTTTCCGACCATATAATGTATATACATACATTCTTGATTAGG--------------------------CCATGTCCGTGTGTC----------------CGTATGAACGTCG----AGATCTCAGGAACTATAAAAGCTACAAGGTTG------------------------
droYak3 v2_chrUn_2241:1386-1658 + TTTCTG---------AAACCAA-----------------------------ATCG-----------------------------------ACT-----------------------------------------------------------------------------------------------TATTAAATGTACGTATTTCTAC----GAAGT----C--------TC-------------AAT------TA------------------------T-GACACTA------------CA------------TAA---------------------------CTTATATTTTTATACC--------C-------GTTACTCGT--AGAGTAAAGGGGTATTCTAGATTCGTTG-------AAAAGTAT------GTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATAT----ATATTCTTGATCAGGATCAATAGCCGAGTCTATCTGG----CCATGTCCGTCTGTCTGTC------------CCTTTGAACGTCG----AGATCTCAGAGACTACAAAAGCTATAAAGTTG------------------------
droEre2 scaffold_4690:18586777-18587028 - TTTCTTCTTT--ATTAGGAAAC---------------------------------------AGG-----GAAAACAGAAG-------------------------------------------------------------------------------T-TAG------ATTTC------------------------------CCAAA-------------------------C-------------------GTGGGTAAGTGA---------------T-T----------------T--A-------------------------------TCACAAAAATACATATATTTTTATACC--------C-------GTTACTCGT--AGAGTAAAAGGGCATACTATATTCGTTG-------AAACGTAT------GTAACAGGCAGAAGGGAACGTTTCCGACCATATAAAGAATAT----ATATTCTTGATCAGGATCACCAGCCGAGTCGATTTGA----CCATGTCCGTA------------------------TGAATGCCT----CGATCTCAGGAACTA-----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTCCCACTCT--GTGAGGGAAAGT----TGAC---------------ATCATTAG-----------------------------------ATTTCAGT------------------------TTGT-------------------------------------------T-----TAAG------------------------------------TGAG----T------------------AC---AATTG--TA--T----------------------A-TG-----A------------AA------------TAAGTCAATACTT-------------------------TTTATACC--------CTT------------GC--A----AAAATGGTATATTAATTTTGGTC-------AGAAGTGT------GCAACGCACAGAAGAAAGCATCTTCGACCATATAAAGTATAT----ATATTCTTGATCAA-----AT--------------AG----CCATGTCCGTCC----GT--------C----TGGATCAACGCGA-------ACTCCTAGACTGTTGGAGCTACAGGCTTGT--------------------ATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAA-----AT--------------AG----CCATGTCCGTCC----GT--------C----TG.......................................................................25200.35707000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGACTGTTGGAGCTACAG.............................20100.10100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAGACTGTTGGAGCTACAG.............................21100.10101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAGACTGTTGGAGCTACAGT............................22120.08101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAA-----AT--------------AG----CCATGTCCGTCC----GT--------C----TGGA.....................................................................27200.05100010
............................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTATATTAATTTTGGTC-------A............................................................................................................................................................................................................23200.05100010
droVir3
AAAATT----------------AA-------A---------------A-------------------------------------------------------------------------------------------------TTCATT-----AAGTTTTG------------------------------------------------------T----TTTAAATAGTTGTAAAT--AA---AATTA--TA--T----------------------T-AT-----A------------TTA--CGGA-----------TTCACTT-------------------------TTTATACC--------CTG---------------------ATAAGGGTATATTGATCTTGTGCAAAATCCAAATGTAT------GTAACAGGCAGAAGGAAACATCTTCGACCCCAGAAAGAATAT----ATATTCTTAATCAGCAC---------------------------TGTA------------------------TGTATGAACGCAA----GTATCTCAGAATCTATAAGAGCTAGAGACTTG------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTAT------GTAACAGGC......................................................................................................................................................................................20200.459000000000000000000000000000405000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAT------GTAACAGGCAGAA..................................................................................................................................................................................18200.204000000000000000000000000400000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAATCTATAAGAGCTAGAGACT..........................25200.102000000000000000000000000020000000000000000000000000000000000000
..................................................................................................................................................................TG------------------------------------------------------T----TTTAAATAGTTGTAAAT--A...................................................................................................................................................................................................................................................................................................................................................................................................21120.081000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------TGTATGAACGCAA----GTATCTCAG...............................................24140.071000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGAATCTATAAGAGCTAGAGACT..........................26160.061000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGAATCTATAAGAGCTAGAGACT..........................27160.061000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCAAATGTAT------GTAACAGG.......................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCTATAAGAGCTAGAGA............................21200.051000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTAT------GTAACAGGCAGAAGGAAAC............................................................................................................................................................................28200.051000100000000000000000000000000000000000000000000000000000000000
droMoj3
AGTCGA-------------------------G---------------CACTCTCG-----------------------------------ACTAGAGT------------------------TTTC-------------------------------------------T-----TACT------------------------------------TGCT----TTTAATCGGTTCA---------------------------------------------------------------------------------------AAATATT-------------------------TGTATACC--------CTGAACCCCTTTTCAAT--GGGAAATCAGGGTATAATGGTTTTGT-T-------AAATGTAT------GTAACAGGCAGAAGGAGGCGTAGCAAACCCCATAAAGTATAT----ATATTTTTGATCAGGGCGA-----CGAGTCGATTTAC----CTTTGTCCGTCTATCCGTCCGTCCGTCCGTATGTATGATCGCGT----CGATCTCAGAAGATATAAGAGCTAGAGACTTGA--------------------AAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................CTCG-----------------------------------ACTAGAGT------------------------TTTC-------------------------------------------T-----TACT------------------------------------TGC............................................................................................................................................................................................................................................................................................................................................................................................................................2442.008000071
...................................................CTCG-----------------------------------ACTAGAGT------------------------TTTC-------------------------------------------T-----TACT------------------------------------TGCT----.......................................................................................................................................................................................................................................................................................................................................................................................................................2540.251100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAGGCGTAG........................................................................................................................................................................21200.153300000
...................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGTTTTGT-T-------AAATGTAT------...............................................................................................................................................................................................22200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGATCAGGGCGA-----CGAG.....................................................................................................................21200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GT-T-------AAATGTAT------GTAACAGGCA.....................................................................................................................................................................................21200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAGGCGTA.........................................................................................................................................................................22200.051000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGT-T-------AAATGTAT------GTAACA.........................................................................................................................................................................................22200.051100000
droGri2
TCGGCT-TGT--ATGAGCAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------TT--------------GT-------------------------ATTATACCCTCAAACCC-------ATTAAAAAT--TGATAAAAAGGGTATAATGATTTTGTAC-------AGAAGTAT------GAAACGGGAAGAAGGAAGCGCTTCCGACACCATAAAGTATAC----ATATTCTTGATCATCTTCTA----------------------------------TTCGTC------------TGTATGAACGCGC----AGATTTCAGAGACTATTTCAACTAGAAACTT-------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
GATCTC----------------AA-------T---------------AACTTTCAG-TCATAGTGTTGTG-------------------------------------------------------C-------------------------------------------------TAAC------------------------------------TTGGTACACTTGAATGCCTCG-------------------------------------------------------------------------AAA-----------TGCAATT-------------------------TTTATACC--------C-------GATACTCAAAATGAGTATTGGGGTATATTCGATTTGTGGTGAAAATGGATGTGT------GTAATGTCCAGAAGGAATCGTTTCCGACGACATAAAGTATAT----ATATTCTTGATCAGCATCAATAGCCGAGTCGGTTGAG----CCCTGTCTGTCC----GT--------C----CCTATCAGCGCCT----AGTGCTCAAAGACTATAAGAGCTAGAG-----------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGT------GTA............................................................................................................................................................................................25200.951900000001900
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGG.................................................................................................................2660.6740400000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGT------GA.............................................................................................................................................................................................24200.501001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAATGGATGTGT------GT.............................................................................................................................................................................................21200.3060600000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGAAGGAATCGTTTCCGAC...................................................................................................................................................................2440.2510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT------GTAATGTCCAGAAGG................................................................................................................................................................................1940.2510000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGAAGGAATCGTTTCCGA....................................................................................................................................................................2340.2510000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGGTTGAG----CCC.....................................................................................................2250.2010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAGTCGG.................................................................................................................2560.1710100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTTGAG----CCCTGTCTGTC.............................................................................................2160.1710100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGGTTGAG----........................................................................................................2260.1710100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTTGAG----CCCTGTCTGT..............................................................................................2060.1710100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGGTTGAG----C.......................................................................................................2260.1710100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGGTTGAG----CCCTGTC.................................................................................................2060.1710000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG----CCCTGTCTGTCC----GT--------C----C........................................................................19200.1530300000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGACTATAAGAGCTAGA..............................21200.1530000000300
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGACTATAAGAGCTAG...............................19200.1530300000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGGTTGAG----........................................................................................................2070.1410000010000
................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATGAGTATTGGGGTATATTCG............................................................................................................................................................................................................................26140.1420200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATGAGTATTGGGGTATATTC.............................................................................................................................................................................................................................20150.1320100001000
..................................................TTTCAG-TCATAGTGTTGTG-------------------------------------------------------C-------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGC.........................................................................................................................24200.1020000200000
..........................................................................................................................................................................................................................................................................................................................................................................................................TATTGGGGTATATTCGATTTGTGG....................................................................................................................................................................................................................24140.0710100000000
...............................................................................................................................................................................................................................................................................................................................................................................................CTCAAAATGAGTATTGGGGTATATTCG............................................................................................................................................................................................................................27140.0710100000000
................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATGAGTATTGGGGTATATTC.............................................................................................................................................................................................................................25140.0710100000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATTGGGGTATATTCGATT.........................................................................................................................................................................................................................23150.0710100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TATTGGGGTATATTCGATTTG.......................................................................................................................................................................................................................21160.0610100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGGTTGAG----CCT.....................................................................................................21170.0610100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCC----GT--------C----CCTATCAGCGCCT----........................................................25200.0510000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGCCT----AGTGCTCAAAGAC...........................................21200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT----AGTGCTCAAAGACTATAAG.....................................21200.0510000000010
.........................................................................................................................................................................................................................................................................................................................................................................CC--------C-------GATACTCAAAATGAGTAT.........................................................................................................................................................................................................................................21200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCC----GT--------C----CCTATCAGCGC..............................................................23200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................TACC--------C-------GATACTCAAAATGA.............................................................................................................................................................................................................................................19200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTCGATTTGTGGT...................................................................................................................................................................................................................18200.0510000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG----CCCTGTCTGTCC----GT--------C----C........................................................................20200.0510000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAG.....................................................................................................................24200.0510010000000
droPer2
AACATC----------------AA-------T---------------ATCAATAG-----------------------------------ACCTGAGG------------------------TTTT-------------------------------------------A-----AAATTGAT----------------------------------------T------------------AC---TATTT--TT--T----------------------T-TG-----T------------TTC--TAGG-----------TTTAGTT-------------------------TTTATACC--------C-------TATACTCAAAATGAGTATTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGT------GCAACGTCCATAAGGAATCGTTTCCGACCCCATAAAGTATAT----ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAG----CCCTGTCTGTCTGTCCGTC------------CCCTTCAGCGCCT----AGTGCTCAAAGACTATAAGAGCTAGAG-----------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGACTATAAGAGCTAGA..............................20200.408000008
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCCATAAGGAATCGTTTCC......................................................................................................................................................................2360.332020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCCATAAGGAATCGTTTCCGACC..................................................................................................................................................................2740.251010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAG----CCCTGTCTGTCTGTCCG.......................................................................................25200.255050000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAAGACTATAAGAGCTAG...............................21200.102000002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATTGAG----CCCT....................................................................................................20200.102020000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAGCGCCT----AGTGCTCAA...............................................21200.102020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGATGTGT------GCAACGTC.......................................................................................................................................................................................21160.061000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGT....................................................................................................................23200.051000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTC------------CCCTTCAGCGCCT----AGTGCTCAA...............................................29200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATTGAG----CCCTGTCTG...............................................................................................23200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTGAG----CCCTGT..................................................................................................21200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAG----CCCTGTCTGTC.............................................................................................18200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCT----AGTGCTCAAAGACT..........................................20200.051000001
droAna3
TTCAGACAC----------------------------------------------------TGA-----GAAACGAGACGATTGACTCTGATTTCGGA---------------A--CTCTCTTTATTTCAGAAGAATAAC------------------------------------------------------------------------------T----C--------TTAT-------------------ATA-------------------------AGATGCTA------------AA-------TT---------ATACATC-------------------------ATTATACC--------CTT------------GC--AG------AGGGTATTATAATTTTGGTC-------AAAAGTGT------GCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT----ATATTCTTGATCAGGATCACCTCCTGAGTCGATATAA----GCATGTCCGTCTGTCCGTC----TGTC----TGTTTCTACGCAAACTAGTCTCTCAG----TTTTAGAGCTATCGAGTTGAAA---------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGGTC-------AAAAGTGT------GCAACGCA.......................................................................................................................................................................................21200.80160000016
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAA----GCATGTCCGTCTGTCCGTC----TG...............................................................................26200.55111100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAA----GCATGTCCGTCTGTCCGTC----T................................................................................25200.255500000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT------GCAACGCAGTGAAGGAGACA...........................................................................................................................................................................24200.153003000
.................................................................................TTGACTCTGATTTCGGA---------------A--CTCTCTTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27180.061100000
.................................................................................TTGACTCTGATTTCGGA---------------A--CTCTCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25180.061100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCTGAGTCGATATAA----GCA.....................................................................................................22200.051001000
............................................................................GACGATTGACTCTGATTTCGGA---------------A--CTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA----GCATGTCCGTCTGTCCGTC----TGT..............................................................................25200.051001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAGTCGATATAA----GCATGTCCGT..............................................................................................26200.051010000
droBip1
CTTTCACCGC--ATGAGT----AAATGGTTAAGTTGTTAACCATCAG-------------------------------------------------ATGGTCG----------------------------------------------------------------------------------------------------------------TGGG----T------------------TC---GATTC--------------------------------C-----C------------AACAGAAGA-----------AGCTGTT-------------------------TTTATACC--------CTT------------GC--AG------AGGGTATTATAATTTTGGTC-------AAAAGTGA------GCCACGCAGTTAAGGAGACATCTTCGACCATATAAAGTATATGTATATATTCTTGATCAGGATCACCTTCTGAGTTGATACATATAAGCATGTTCG-C------------TGTC----TGTTTCTACGCGAACTACTGTCTCAG----TTTTAAAGCTATTGACTTGA-----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTCTCACTCG--GCAGTA----------------------------------------------------------------------------------------------------------------------TAACCCTGACAAATTTAATCAAATAATG------TTTCT-ACA-------------------------TTC-------------------------TTAT-------------------ATATGT-----------------------------A------------AA-------TTATATATCTTAACTATT-------------------------TTTATACC--------CTT------------GC----------AGGGTATTATAATTTCAGTC-------AGAAGTTT------GCAACGCAGTGAAGGAC------CCGACCCTATAAAGTATAT----ATATTTTTCATCAGCATCAACAGCCGAGTCGATCTAA----CCATGTCCCTC--------------------------------------------AG----TTTTAAAGCTATCCGACTGAAAATTTGCATATAGTCTTCTATASizeHit CountTotal NormTotal
No Reads
droFic1
GTGTGT------AAGAGT----GAATATTTAA-----------------------------------------------------------------------------------------------------------------------------AAT-TTG------ATTTT-TAT-------------------------TTGTAA-------------------------A-------------------ATGGGTAAATAA---------------T-G-TGATAAATAAATATTTCTTC------------------------------TCACAATAT--------TTTTTATACC--------CTT------------GC--AGAGCAAAAGGGTATTATAAATTCAGTC-------AGAAGTTT------GCAACGTAGTGAAGGAGACACCTCAGACCCCATAAAGTATAT----ATATTCTTGATCAGCATCAA-----------------------------------------------------------------ACTAGTCACTCAG----TTTTAAAGCTATCTTGCTGAAACTTTCCCAAAAGGTGTGTAGTSizeHit CountTotal NormTotal
No Reads
droEle1
AGAGAA---------------A---------------------------------------------------TGTGAAAACAAAATCC-------------------------------------------------------------------------CGCTTTGA-----AAATTAATCATGTATTCGTGTATACAT----------------------------------------------------------------------------------------A------------TA--TCAAT-----------CTTTATT-------------------------TTTATACC--------CTT------------GC--AG------AGGGTTTTATAATTTCAGTC-------AGAAGTTT------GCAACGCAGTGAAGGAGACATTTCCAACCCTATAAAGTATAT----ATATTCTTGATCAGCATCACTAGCAGATTCGGTCTAG----ATATATATTTT--TTTGTC----TTTT----TG------------------TTGCAGGTAGT---------------------------------------ACASizeHit CountTotal NormTotal
No Reads
droRho1
ATTCTA-------TGACA---------------------------------------------------------------------------------------------------------------------------------AA-----------------------------TTAATTATGT--------------------TATCAG-TTAATATATT--------------T--AATGCCATAA--TA--CAT-----------------------------A------------AA--TAACA-----------AAACATT-------------------------TTTATACC--------CTT------------GC--AG------AGGGTATTATAATTTTGGTC-------AAAAGTGT------GCAACGCAGTGAAGGAGGCATCTCCGACCCTATAAAGTATAT----ATATTCTTGATCAGGATCACCTCCTGAGTTGATATAG----CCATGTCCGTCTGTCCGTC----TGTC----TGTTTCTACGCAAACTAGTCTCTCAG----TTTTAAAGCTATCGAATTGAAACTTTGC------------ACASizeHit CountTotal NormTotal
No Reads
droBia1
TTTCTTCTGTTAAAGAAT----GTAGGTTTAAGTAGTTTTCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATG-----T--TTA----AT------AACTCCCATAGCTGT-GT-----C------------AATTACAGG-----------TCCTATT-------------------------TTTATACC--------CTT------------GC--AG------AGGGTAAAATGATTTCAGTC-------AGAAGTTT------GCAACGCAGTGAAGGAGACGTTTCCGACCCCAAAAAGTATAT----ATATTCTTGATCAGCGTCACTAGACGAGTCGATCTAG----CCATGTCCGTATGTCCGTCTGTCTGTC----CGTTTCTACGCAAACTAGTCTCTCA----CTTTTAAGGCTATTGCGCTGAAAC----------GTCTTCTTTCSizeHit CountTotal NormTotal
No Reads
droTak1
CCTTTTTTG----TGGCATA--------------------------------------------------------------------------------------------------------------------AAGTCTAAAATCATTTTGTGAAAT-TT------------TAGT----TTT------------------TTCTTA------------------TCCGTTAA--------------------------------------------------------AGAAATG-----------------------------TTTAACTATCATAAAAC--------TATTTATACC--------C-------GTTACTCGT--AGAGTAAAAGGGTATATTGTATTCGTGC-------AAAAGTAT------GTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAACTATAT----ATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAG----CCATGTCCGTCTGTCTGTCCGTCTATCTGTCTGTATGAACGCTG----AGATCTCGGAAACTATAAAAGCTAGAAGATTGA---------------------CASizeHit CountTotal NormTotal
No Reads
droEug1
TCTGTGCAGA--AAAGAT----AAGAATCTGAGTATTCTAAAAATAA-------------------------------------------------ATTATTTTAAGTTCGAAGGC-----------------------------------------------------------------------------------------------------------------------------------GTTGG--TA--T-------------------------------C------------CAAAAAAGT-----------AAACATT-------------------------TTTATACC--------C-------GTTTTTCGT----------TGAGTATGTTAGATTCGTTG-------AAAAGTAT------GTAACAGGTAGAAGGAATCGTATCCGACTCTATAAAGTATAT----ATATTCTTGATCAGGATCAATAGCGAAGTCGATTAAG----CCAT--------------------------------GAAAGCTG----AGGTCTCAGAAACTATAGGAGATACGAAGTTG------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTTACACCAT------------------------------------------T-----------------------------------------------------------------------------------AATATTAAGTTCATT-----AA----T---------------------------------------------------------------------------ATTTAA-----A--CTT----AT------AAATAAAAAAAAGTT-GC-----C------------ATCTGGAAT-----------TGGTATT-------------------------ATTATACC--------C-------GTTACTCGT--AGAGTAAAAGGGTATACTAGATTCTTTT-------AAAAGTAT------GTTAAAGGCAGAAGTAAGCGTTTCCGACTATATAAAGGATAT----ATATTATTGATCAGGGTCAATAGCCGAGTTTATCTAG----CCATGTCCGTA------------------------TGAACGTCG----AGATCTTAGGAACTATAAAAGCTAGAAGCATAC--------------------ATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTA------------------------TGAACGTCG----AGATCTTAGG..............................................2584.75380000000000000000000000000000000000000000001010101000000000000000000000000000000000000000000000000000000000000000000000000000000000300100010400000000000000000000000000000000000000000000000011000000000001200000000000000000102110000000000000000000000000000000000000000000000000000000000000000000110000000315000000000000000102100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTA------------------------TGAACGTCG----AGATCTTAGG..............................................2744.75190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000005000000000001030000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG----CCATGTCCGTA------------------------TGAACGTCG----AGA.....................................................2652.80140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002401000000000010100000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----AGATCTTAGGAACTATAAAAGC..................................25102.802800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000011010100000000000000110101020000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000001001200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAG----CCATGTCCGTA------------------------TGAACGTCG----A.......................................................2662.67160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001301002050000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG----CCATGTCCGTA------------------------TGAACGTCG----A.......................................................2461.83110000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100302000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGGAACTATAAAAGCT.................................19130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCG----AGATCTTAGGA.............................................18130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----CCATGTCCGTA------------------------TGAACGTCG----A.......................................................22130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA------------------------TGAACGTCG----AGATCTT.................................................19130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droSim2
GGGATA----------------AG----TGAC---------------AT-TTTCAATTGACAGTGTTATGAAACGAGGAGAT-----CC--------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----------------------------------T----------------T--A-------------------------------TTAT-------CCTATATTTGTATACC--------C-------GTTACTCGT--AGAGTAAAAAGGTACTCTAGACGCGTTG-------AAAAGTGTTACATAGAAACACAG---AGAAAGCGTTTCCGACTATATAAAGTATAT----ATATTCTTGATCAGGATCAATAGCCAAGTCGATCTGG----CCC----------------------------------------------GATCTCAGGAACTATAAAAGCTAAAAGGTTG------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAAAAGGT..........................24619.0011400014025531734043000
..................................................................................................................................................................................................................................................................................................................................................................................................................TACTCTAGACGCGTTG-------AAAAGTGT.....................................................................................................................................................................................................24112.0012000000000012000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATAGAAACACAG---AGAAAGCGTT.........................................................................................................................................................................2518.00800000000006020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAAAAGGTTG------------------------2655.202600000059421023000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAGTCGATCTGG----CCC----------------------------------------------GATC...................................................2414.00400000000004000000
...................................................................................................................................................................................................................................................................................................................................................................................................T--AGAGTAAAAAGGTACTCTAGACGCGT......................................................................................................................................................................................................................2714.00400000000004000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCGATCTGG----CCC----------------------------------------------GATCTCAGGA.............................................2613.00300010001001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAAAAGGTT.........................2562.501500000053003022000
................................................................................................................................................................................................................................................................................................................................................................................................TCGT--AGAGTAAAAAGGTACTCTAGA...........................................................................................................................................................................................................................2512.00200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACACAG---AGAAAGCGTTT........................................................................................................................................................................2112.00200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAGTCGATCTGG----CCC----------------------------------------------GATCTC.................................................2612.00200000010001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AGACGCGTTG-------AAAAGTGTTA...................................................................................................................................................................................................2012.00200000000002000000
............................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGTACTCTAGACGCGTTG-------AAAAGT.......................................................................................................................................................................................................2812.00200000000000020000
.........................................................TGACAGTGTTATGAAACGAGGAGAT-----C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGG----CCC----------------------------------------------GATCTCAGGAACTATAAAAG...................................2812.00200000000000020000
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCGT--AGAGTAAAAAGGTACTCTA.............................................................................................................................................................................................................................2612.00200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAGTCGATCTGG----CCC----------------------------------------------GATCT..................................................2512.00200000020000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGTCGATCTGG----CCC----------------------------------------------GATCTC.................................................2412.00200000000000020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAAAAGGT..........................2561.671000000000115030000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAAAAGG...........................2361.33800000023110001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAA...............................24101.101100009000001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT----ATATTCTTGATCAGGATC...............................................................................................................................24201.0521001700000000040000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAGTCGATCTGG----CCC----------------------------------------------GATCT..................................................2411.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG----CCC----------------------------------------------GATCTCAGGAACTAT........................................2111.00100000000000010000
................................................T-TTTCAATTGACAGTGTTATGAAACGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................TCGT--AGAGTAAAAAGGTACTCTAGACGC........................................................................................................................................................................................................................2811.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GACGCGTTG-------AAAAGTGTT....................................................................................................................................................................................................1811.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATAGAAACACAG---AGAAAGCGTTTC.......................................................................................................................................................................2711.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACACAG---AGAAAGCGTT.........................................................................................................................................................................2011.00100000000001000000
.......................................................ATTGACAGTGTTATGAAACGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTGG----CCC----------------------------------------------GATCTCAGGAACTA.........................................2711.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATAGAAACACAG---AGAAAGC............................................................................................................................................................................2211.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGTACTCTAGACGCGTT.....................................................................................................................................................................................................................2111.00100000000001000000
..................................................................TATGAAACGAGGAGAT-----CC--------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----------------------------------T----------------T--A-------------------------------......................................................................................................................................................................................................................................................................................................2411.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGG----CCC----------------------------------------------GATCTCAGGAACTATAAAA....................................2711.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAG---AGAAAGCGTTTCCGAC...................................................................................................................................................................2311.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGG----CCC----------------------------------------------GATCTCAGGAACTATAAAAGC..................................2911.00100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG----CCC----------------------------------------------GATCTCAGGAACTATAAA.....................................2411.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAG---AGAAAGCGTTTCCGACTAT................................................................................................................................................................2411.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTGG----CCC----------------------------------------------GATCTC.................................................1911.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAG---AGAAAGCGTTTCCGACTATA...............................................................................................................................................................2511.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................T--AGAGTAAAAAGGTACT................................................................................................................................................................................................................................1711.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAG---AGAAAGCGTTTCCGACTA.................................................................................................................................................................2511.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAG---AGAAAGCGTT.........................................................................................................................................................................1711.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACAG---AGAAAGCGTTTCCGACTATA...............................................................................................................................................................2711.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGTCGATCTGG----CCC----------------------------------------------GATCTCAGGAAC...........................................3011.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................TATTTGTATACC--------C-------GTTACTCGT--AGAGT...........................................................................................................................................................................................................................................2711.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTCTAGACGCGTTG-------AAAAGT.......................................................................................................................................................................................................2411.00100000000001000000
.............................GAC---------------AT-TTTCAATTGACAGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................T--AGAGTAAAAAGGTACTC...............................................................................................................................................................................................................................1811.00100000000001000000
......................................................AATTGACAGTGTTATGAAACGAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATAGAAACACAG---AGAAAGCG...........................................................................................................................................................................2311.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGGTACTCTAGACGCGTTG-------AAA..........................................................................................................................................................................................................2711.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTCTAGACGCGTTG-------AAAAGTGT.....................................................................................................................................................................................................2611.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAACACAG---AGAAAGC............................................................................................................................................................................1811.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................CTCGT--AGAGTAAAAAGGTACTCTAGA...........................................................................................................................................................................................................................2611.00100000000001000000
.........................................................TGACAGTGTTATGAAACGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCTAGACGCGTTG-------AAAAGTGT.....................................................................................................................................................................................................2511.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................TCGT--AGAGTAAAAAGGTACTCTA.............................................................................................................................................................................................................................2311.00100010000000000000
........................................................TTGACAGTGTTATGAAACGAGGAGAT-----C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTCGATCTGG----CCC----------------------------------------------GA.....................................................1911.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCTAGACGCGTTG-------AAAAGT.......................................................................................................................................................................................................1911.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCGT--AGAGTAAAAAGGTACTCTAGA...........................................................................................................................................................................................................................2811.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................TATTTGTATACC--------C-------GTTACTCGT--AGAG............................................................................................................................................................................................................................................2611.00100000000010000000
..............................................................GTGTTATGAAACGAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAGTCGATCTGG----CCC----------------------------------------------GAT....................................................2311.00100000000001000000
..................................................................TATGAAACGAGGAGAT-----C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
......................................................AATTGACAGTGTTATGAAACGAGGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATC...............................................................................................................................16200.5511000000000011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------------------------GATCTCAGGAACTATAAAAGCTAAA..............................2620.50100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT----ATATTCTTGATCAGGATCAAT............................................................................................................................27200.45900900000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAAAAGG...........................2460.33200000000002000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAAAAGGT..........................2760.33200000000000020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAAAAG............................2760.33200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAAAAG............................22100.30300000001002000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCGATCTGG----CCC----------------------------------------------.......................................................1640.25100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGGAACTATA.......................................16200.25500000000005000000
.......................................................................................................................................................................................................................................................................................................................................................................TACC--------C-------GTTACTCGT--AGAGTAAAAAGG....................................................................................................................................................................................................................................2640.25100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAAAAGGTA.........................2590.22200000000100001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAAAAGGTTG------------------------2750.20100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAACTATAAAAGCTAAAAGGTT.........................2660.17100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGCTAAAA.............................2660.17100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................TTTGTATACC--------C-------GTTACTCGT--AGAGTA..........................................................................................................................................................................................................................................2660.17100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAGGAACTATAAAAGCTAAAAGG...........................2760.17100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCAGGAACTATAAAAGCTAAAAGGT..........................2860.17100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT----ATATTCTTGATCAGGATCAATA...........................................................................................................................28200.15300000030000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCAAGTCGAT................................................................................................................2270.14100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAAAAGGTTT------------------------2680.13100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAAAAGGTA.........................2880.13100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCAAGTCGA.................................................................................................................2880.13100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATAAAAGCTAAAAGGTTG------------------------2180.13100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGGAACTATAAAAGCTAAAAG............................2590.11100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCAAGTCGC.................................................................................................................2890.11100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCAAGTCGATCTG.............................................................................................................1990.11100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATAAAAGCTAAAAGGT..........................2090.11100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAAGCTAAAAGG...........................16100.10100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGGAACTATAAAAGC..................................21200.10200000000002000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCAAGTCGA.................................................................................................................21100.10100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCAAGTCGATACT.............................................................................................................25200.10200000000200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAT----ATATTCTTGATCAGGA.................................................................................................................................22200.10200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................GTATACC--------C-------GTTACTCGT--AGAG............................................................................................................................................................................................................................................21100.10100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCCAAGTCGAT................................................................................................................19110.09100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGCTAAAAGGT..........................16120.08100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCAAGTC...................................................................................................................21130.08100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAAAAGGAA.........................25140.07100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAACTATAAAAGCTAA...............................21140.07100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCAAGTCGAT................................................................................................................16160.06100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAACTATAAAAGCTAA...............................19180.06100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................TGTATACC--------C-------GTTACT.....................................................................................................................................................................................................................................................15180.06100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATAAAAGCTAAA..............................16200.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----ATATTCTTGATCAGGATCAATAG..........................................................................................................................27200.05100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAT----ATATTCTTGATCA....................................................................................................................................21200.05100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAT----ATATTCTTGATCAGG..................................................................................................................................23200.05100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCAAGTCGA.................................................................................................................15200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAT----ATATTCTTGATCAGGATCAA.............................................................................................................................25200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----ATATTCTTGATCAGGATCAATAG..........................................................................................................................26200.05100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCTAAAAGGTT.........................15200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCAAGTCA..................................................................................................................26200.05100000001000000000
droSec2
AAGTTT------------------------ACGT-----------AAATCATTTG-----------------------------------ATTTCAGG-----------------CGCCGTTATTT----------------------------------------------------------------------------------------------------------TTCA-------------------AAG---------------------------------------------------CG------------AAAACTT-------------------------TTTATTCC--------C-------GTTACTCGT--AGAGTGAAAGGGTATACTAGATTCAATG-------AAAAGTAT------GTATCAGGCAGAAGGATGCGTTTCCGACCATATAATGTATATACATACATTCTTGATTAGG--------------------------CCATGTCCGTGTGTC----------------CGTATGAACGTCG----AGATCTCAGGAACTATAAAAGCTACAAGGTTG------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----AGATCTCAGGAACTATAAAAGC..................................24200.3066000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGATGCGTTTCCGACCATA...............................................................................................................................................................2540.2511000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----AGATCTCAGGAACTATAAAAGCT.................................25200.1022000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCG----AGATCTCAGGAACTATA.......................................25200.0511000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCG----AGATCTCAGGAACT..........................................20200.0510010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----AGATCTCAGGAACTATAA......................................21200.0510010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------CGTATGAACGTCG----AGATCTCAGGA.............................................25200.0511000
droYak3
TTTCTG---------AAACCAA-----------------------------ATCG-----------------------------------ACT-----------------------------------------------------------------------------------------------TATTAAATGTACGTATTTCTAC----GAAGT----C--------TC-------------AAT------TA------------------------T-GACACTA------------CA------------TAA---------------------------CTTATATTTTTATACC--------C-------GTTACTCGT--AGAGTAAAGGGGTATTCTAGATTCGTTG-------AAAAGTAT------GTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATAT----ATATTCTTGATCAGGATCAATAGCCGAGTCTATCTGG----CCATGTCCGTCTGTCTGTC------------CCTTTGAACGTCG----AGATCTCAGAGACTACAAAAGCTATAAAGTTG------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAG.....................................................................................................................25206.201240124000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTGAACGTCG----AGATCTCA................................................2120.50101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTCC......................................................................................................................................................................24200.40800800000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------AAAAGTAT------GTAACAGGCAGAAGGAAG.............................................................................................................................................................................28200.25500000000005
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG----CCATGTCCGTCTGTCTGTC------------C........................................................................23200.15302100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTTG-------AAAAGTAT------...............................................................................................................................................................................................16200.10200000000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCTATCTGG----CCATG...................................................................................................25160.06101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGTCTATCTGG----C.......................................................................................................26180.06101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGG----CCATGTCCGTCTGTC.........................................................................................22190.05100100000000
............................................................................................................................................................................................................................................................................................................................................................................................TTACTCGT--AGAGTAAAGGGGT...................................................................................................................................................................................................................................21200.05100000100000
................................................................................................................................................................................................................................................................................................................................................................................................TCGT--AGAGTAAAGGGGTAT.................................................................................................................................................................................................................................19200.05100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTAGATTCGTTG-------AAAAGT.......................................................................................................................................................................................................21200.05100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GTAACAGGCAGAAGGAAG.............................................................................................................................................................................19200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGTCG----AGATCTCAGA..............................................19200.05100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----ATATTCTTGATCAGGAT................................................................................................................................19200.05100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCTAC................................................................................................................27200.05100100000000
droEre2
TTTCTTCTTT--ATTAGGAAAC---------------------------------------AGG-----GAAAACAGAAG-------------------------------------------------------------------------------T-TAG------ATTTC------------------------------CCAAA-------------------------C-------------------GTGGGTAAGTGA---------------T-T----------------T--A-------------------------------TCACAAAAATACATATATTTTTATACC--------C-------GTTACTCGT--AGAGTAAAAGGGCATACTATATTCGTTG-------AAACGTAT------GTAACAGGCAGAAGGGAACGTTTCCGACCATATAAAGAATAT----ATATTCTTGATCAGGATCACCAGCCGAGTCGATTTGA----CCATGTCCGTA------------------------TGAATGCCT----CGATCTCAGGAACTA-----------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GTAACAGGCAGAAGGGA..............................................................................................................................................................................1850.2010000010

Generated: 05/18/2015 at 07:36 AM