ID:

dwi_3602

 Coordinate:

scf2_1100000004949:859039-859189 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.0 -21.5 -21.4

Flybase annnotation

exon [dwil_GLEANR_10730:5]; CDS [Dwil\GK10540-cds]; intron [Dwil\GK10540-in]

No Repeatable elements found

mature
  1. scf2_1100000001116:466-491 -
  2. scf2_1100000004837:90218-90243 +
  3. scf2_1100000004830:410758-410783 -
  4. scf2_1100000004921:4443347-4443372 +
  5. scf2_1100000004936:742843-742868 +
  6. scf2_1100000004949:570155-570180 +
  7. dwi_3602  scf2_1100000004949:859115-859140 -
  8. scf2_1100000004953:1239897-1239922 -
  9. scf2_1100000004967:735973-735998 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAACATTTGACATTTTATATGAAACCTTTTCCACTTTGACGGATATAAGTATGGAAAGACTCACAAAATAAGCTTGCAAGGGTATACAATCATCGGCGCTGTCGAAGTTAGCCCCGGCCCTCTGGTTTTTTCCTTCTTTTGCTTTATCCTTTATTGTCTCATGCCAATTACTACTGTCTGGTTCTTTTATTTTTTTTACAGATGCCTTCGCTTTATGTCTGAATACAGTAGTTGTCTATTTCAAGGCTATG
**************************************************......((((.........((((....(((((.....(((((((((.((((.......)))).)))).....)))))...))))).....))))...........))))...((((...((....)).))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
...................................................................................................TGTCGAAGTTAGCCCCGGCCCTCTGG.............................................................................................................................. 26 0 9 1.78 16 12 4
...................................................................................................TGTCGAAGTTAGCCCCGGCCCTCTGGT............................................................................................................................. 27 0 9 0.56 5 1 4
...................................................................................................TGTCGAAGTTAGCCCCGGCCCTCTG............................................................................................................................... 25 0 9 0.44 4 3 1
................................................................................................CGCTGTCGAAGTTAGCCCCGGCCCTC................................................................................................................................. 26 0 6 0.33 2 2 0
....................................................................................TACAATCATCGGCGCGGTCGAAGTT.............................................................................................................................................. 25 1 3 0.33 1 0 1
...................................................................................................TGTCGAAGTTAGCCCCGGCCCTCTGGTT............................................................................................................................ 28 0 9 0.33 3 3 0
................................................................................................CGCTGTCGAAGTTAGCCCCGGCCC................................................................................................................................... 24 0 7 0.29 2 2 0
...................................................................................................TGTCGAAGTTAGCCCCGGCCCTCT................................................................................................................................ 24 0 9 0.22 2 2 0
...................................................................................................TGTCGAAGTTAGCCCCGGCCCTC................................................................................................................................. 23 0 9 0.22 2 1 1
...................................................................................................TGTCGAAGTTAGCCCCGGC..................................................................................................................................... 19 0 11 0.18 2 2 0
................................................................................................CGCTGTCGAAGTTAGCCCCGGCCCTCT................................................................................................................................ 27 0 6 0.17 1 1 0
...................................................................................................TGTCGAAGTTAGCCCCGGCCCTCTGGTTT........................................................................................................................... 29 0 8 0.13 1 1 0
..................................................................................................CTGTCGAAGTTAGCCCCGGCCCTCTGGC............................................................................................................................. 28 1 16 0.06 1 0 1
............................................................GCACTAGATAAGCTTGCAA............................................................................................................................................................................ 19 3 20 0.05 1 1 0

Anti-sense strand reads

TTTGTAAACTGTAAAATATACTTTGGAAAAGGTGAAACTGCCTATATTCATACCTTTCTGAGTGTTTTATTCGAACGTTCCCATATGTTAGTAGCCGCGACAGCTTCAATCGGGGCCGGGAGACCAAAAAAGGAAGAAAACGAAATAGGAAATAACAGAGTACGGTTAATGATGACAGACCAAGAAAATAAAAAAAATGTCTACGGAAGCGAAATACAGACTTATGTCATCAACAGATAAAGTTCCGATAC
**************************************************......((((.........((((....(((((.....(((((((((.((((.......)))).)))).....)))))...))))).....))))...........))))...((((...((....)).))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V119
head
..........................................................................................................................ACCAAAAAAGGGAGAAAAC.............................................................................................................. 19 1 3 0.33 1 1 0 0
........................................................................................................................................................TAACATAGTAAGGTTAATG................................................................................ 19 2 6 0.17 1 0 1 0
..........................................................................................................................ACCAAAAAAGGGAGAAAA............................................................................................................... 18 1 14 0.07 1 1 0 0
................TGTGCTTTGGAAGAGGTGA........................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1
...........................................................................................................AATCGGGGCCGGGAGACCAAAA.......................................................................................................................... 22 0 20 0.05 1 1 0 0
......................................................................................................GCTTCAATCGGGGCCGGGAGACCA............................................................................................................................. 24 0 20 0.05 1 0 1 0
.........................................................................................................TCAATCGGGGCCGGGAGACCA............................................................................................................................. 21 0 20 0.05 1 1 0 0
...................................................................................................................................GGAAGAAATTGAAATAGG...................................................................................................... 18 2 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004949:858989-859239 - dwi_3602 AAACATTTGACATT---------TTATATGA-----A--A-------------------------------C--------------------------------CT-------T---TTCCACTTTGAC-GGATATAAGTATGGAAAGACTC-----ACAAAATA--------------------------------AGCTTGCAAGGGTATACAATCATCGGCGCT-GTCGAAGTTAGCCCCGGCCCTCTGGTTTTTTCCTTCTTTTGCTTTAT------------------------CCTTTATT-------GTCTCATGCCAATT-----------------------------------------------------------------------------ACTACTGTCTGGT----------TCTTTTATTT---------------------------------------------------------------------------------------------------------------------------------------------TTTTTAC--AGATGCCTTCGCTTTATGTCTGAATACA--GTAGTTGTCTATTTC---AA-GG----------------------------------CTATG
droVir3 scaffold_12958:533363-533622 + AAACTCG-G-CATTT--ACTATTTT-----CCCGGTA--C-TTCTTAGATAGGGG-----------CGAAGCAC----------------------TATGAGTA--------T--------------------------TATGGAAAGGTT-------------G--------------------------------GGTCTGCAAGGGTATTAGATCTTTGGCGT--GCCGAAGATATCAA-T-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTCGTTATTTCTTTATTTACTCACGGGTGCACTAAAAGTTTGTTAATTATTTATGCATATATATATTTATTTTT-------------------------------ATTTTA----------------TTT-----------------TTATTAT--TATTATTTTTT-TTTTTGTTAT--GTTT--GTATTTATGTGTTTT---GT-TG----------------------------------CTGCG
droMoj3 scaffold_6482:2105574-2105718 - GGTATAC-A-TTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGC-------------------CAAA-GTTGTGTAGTGATT-T-CT------------CGATCCTATCCTATAT------------------------TCCTTTTT-------GTCTCTTGCTAATT-----------------------------------------------------------------------------ATTTCTTGCAA---------------------------------------------------------------------------TATTGGTAATACTTT-------------------------------CCTTTT------------------------------------TCTTTAC--TAATACTTTTACCTTAAGATTTATTATA--AT------------------------------------------------------------
droGri2 scaffold_15110:18553354-18553426 - TGGTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGT--------------------------------------------------------------------------------------------------TTC--------------------------ATCCGAC--AGATGCTTGCGTTTCATGTCCGAGTACA--GTAGTTGCCTGTTTC---AA-GG----------------------------------CTATG
dp5 XR_group6:878395-878492 - TTTTT-A-C-CAAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACAG--TTCTGT-----------TCTGTCTGTT---------------------------------------------------------------------------------------------------------------------------------------------TTCGTTC--AGATGCCTGCGCTTCATGTCTGAGTACA--GCAGCTGCCTGTTCC---AG-GG----------------------------------ATATG
droPer2 scaffold_3575:1404-1476 - TTTTTTT-T-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCACTTTTTGGTTTTTT---------------------------------------------------------------------------------------ATTTTTTTTTT---------------------------------------------------TTTCACTTTTTGGTTTT--TTTATTTTTT-----------------------------------------------TTTCA
droAna3 scaffold_13339:2632015-2632293 + AATAATT-C-GATAT--GCC-----------------AAATTTCATAAGGATCGGTGAACTATATACGATCCGC----------------------TATATATCTAATAAT---------------------------------------------------ATAAGATGCGTGGCGCCACCTAGCGGACTGCGACTCAACTGCAAGGGTATATAAGTTTCGGCTCCGCCCGAAGTTAGCTTTCCTTTTCTTGTTTTTTTT---------------------------------------------TGTTTTTA----------------TTTTTATTTCTTTTTTTTTTTTACATAAAAACCTGCTTATTT---------------------------------TTTTGTATG-------------------------------------------------------------------------------TT----------TA----------------------------------------------TATTGTTTTTTGTTCTTTTTTT-------------------------TTTTT------ACA---TGAAAAAACTTGCC--------------------------------------------TATTT
droBip1 scf7180000391411:4744-4986 - AATAAAT-T-GG-AT--TAT-----ATATTC-----ATATTTCCATAAGGATCGGCCAACTATATCCGAT----------------GTTTGCGA--TATATATCCG----------------GT--------------------------T-------------T--------------------------------AAACTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTAGCTTTC-CTTTCTTGTTTTTTTTTT-------------------------TTAAATTTTAATTTTTTTT-------GTATAAAAT-----------------------------------------------TTAATTGATAA----------------------------------------------------------------------------------------------------------------TT----------TA-----------------------------TATCATT--TTTACCGA----TTTTTT----------------TTTTAAT--CA-----------TTATTTTTTAAAA---TGTAAATATTT------------------------------------------------ATTT
droKik1 scf7180000302486:1085006-1085268 - AAACATA-A-TAAGT--ATA---------------------------------GGTAAACTGTA-ATGAAACTCTATTTTGTGAGTGTTTTCAACATTTATATCT-ATAATATAAACATCAAAA--------------------------C-------------C--------------------------------AATCTGCAAGGGTATACAAACTTCGGCGT--GCCGAAGTTAGCTT-C-CTTTCTTGTTTGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCCTTT-A-------------------------------------------------------ATATAATTGTATTTTCTTTTTTAATATTTTAATATCATCCTCTCAT--------------------------ATTTTAT--ATATATTTTTGTTTTAGTTGTTCTCTGA--AACTATGTATGTTTT---CA-AA----------------------------------CTATG
droFic1 scf7180000453974:34233-34415 - CGATGTTGTTTAGT---------CTTTGTGT-----A--T-------------------------------T--------------------------------CT-------G---T--------------------------------TCGAAATATTTGAT----------------------------------GACTGCAAGGGTATATAAGCTTCGGCTT--GCCGAAGCTAGCTT-C-CTTTCTTGTTGTATCA-----------------------------------------------------------AATCA-------------------------------------------------TTTACAATTTCTATTTTAGACCCATCAGTTTTAGTATGTGGTGTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTGGGTCTC--ACAGATATTCGTTTT-----------------------------------------------
droEle1 scf7180000491249:627899-628166 + AAATACTCA-AGTAAATCAT----AATTTAA-----------------------------------------------------ATGTTTTCAAAA-------------------GT---------------ATTTA-----------ATTC-----ATGCAAT----------------------------------AGCTGCAAGGGTATATGATCTTCGGCTT--GCCGAAGTTTGCTT-T-CTTTCTTGTTGGTTCATA-----------TATCAACCTGCCTTTGAGATTTTTAT------TCTATTTG----------------GTATAAGTTCTTTATGTAAATGTCATATGAACCAATTGGTAA---------------------------------ACTTTTGTGATTTCA-----------ATTA----------------------------------------------------------------------------------------------------------------------------TTT-----------------TTGTTAT--AAATACTTCTG-TTAATGTCAG-GTAA-----GGTGGCATGTTCA---A--GG----------------------------------TATTC
droRho1 scf7180000771957:56690-56919 + GAGTATT-A-AGAAT--GCA---TCATATGA-----------------------------------------------------ATAATTTT----------------------------------GGA-GAATATA-----------ATTT-----ACAGAGT---------------------------------TTTCTGCAAGGGTATATCAACTTTGGCTCCGCCCGAAGTTACCTTTC-CTTTCTTGTTTTATAA---------------ACAATTTGTTTTTCG-----------------------------------------------------------------------------------------------------------------------TGTGCTGACT------------------------------------------------------------------------------------------------------------------------------------------TATTTTTAGCTTTATTT----------------TGCTTAGGTTTCAT----------------TTAATGCGTTTTTAAGT-CGCTCCGATGGTTTAAATACAGTTAAATTCGTTATTTTAAG
droBia1 scf7180000301495:801003-801276 - GAATATA-A-ATTTT--TATATTTT-----T-------------------------------------------------------------AAGA-------------------ATTTCGAATTCAATTTAATAAAATTATTGATTAT--------TTTTTAT----------------------------------AGCTGCAAGGGTATGCAAACTTCGGCTT--GCCGAAGTTAGCTT-C-CTTTCTTGTTTATTGT--------------------------------------------------------------AAACT-----------------------------------------------------------------------------------------------------------------------------TACGTTTACGTTA-----------------------------------------ATACGAAGTTAACTTCCTTTCTTGTTTTATATTATCTTCTCACCAA----ATTTTAAATTGTTCTTTTTATTTTGATAAAACGATAGTTGCAATTCAGAACTAATTAAGAAGTAGTTATG--TTTC---CAAGC----------------------------------GTAGA
droTak1 scf7180000415704:89257-89431 - AGAAATTTAACATT---------TT-----T---GTG--A----------------------------------------------------------------------TTTGTA--------------------A-----------ATTA-----ATACAAT---------------------------------GATCTGCAAGGGTATATAAGCTTCGGCTT--GCCGAAGCTAGCTT-C-CTTTCTTGTTTTTTAT---------------------------------------------T-----------------GCTTAATT------------------------------------------------------------------TCTGTTTAATATTGTTGAGGCA---------TTTTTATTT---------------------------------------------------------------------------------------------------------------------------------------------GT------------------TTTAACTCCTAAATAAA--TTAAATGTTGATTTA---------------------------------------------AA
droEug1 scf7180000409456:1113849-1113957 + TTTTATG-C-CGAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACAGAGCTCTGCT----------CCCCTCTGCTCTTCGGTTATTTGC----------------------------------------------------------------------------------------------------------------------------------------AGATGCCTGCGCTTCATGTCCGACTACA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CTATG
dm3 chr3L:14860435-14860543 + TTTTATG-C-CGAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACGGAGCTTTGCT----------TCTCTCCGCTCTCCGGTTATTTGC----------------------------------------------------------------------------------------------------------------------------------------AGATGCCTGCGCTTCATGTCCGAGTACA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CTACG
droSim2 3l:14501753-14501861 + TTTTATG-C-CGAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACGGAGCTCTGCT----------CCTCTCCGCTCTCTGGTTATTTGC----------------------------------------------------------------------------------------------------------------------------------------AGATGCCTGCGCTTCATGTCCGAGTACA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CTACG
droSec2 scaffold_0:6973273-6973381 + TTTTATG-C-CGAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACGGAGCTCTGCT----------CCTCTCCGCTCTCTGGTTATTTGC----------------------------------------------------------------------------------------------------------------------------------------AGATGCCTGCGCTTCATGTCCGAGTACA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CTACG
droYak3 v2_chr2L_random_028:678517-678623 + GGGTATC-A-GATAG--TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAA-CTCGACTATAGCGT-T-CTCTCTTGTTTTTTCTAT------------------------------------TTTTTTTT-------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATATTTTTTTTCATGTTATTTTTTTTCCTTTTTTT----------------------------------------------------------------------------------------------------TGTTT
droEre2 scaffold_4784:14820385-14820503 + TTTTATG-C-CGAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACGGAGCTCTGCTCCTCCCTGCTCCTCTCTGCTCTCCGGTTATTTGC----------------------------------------------------------------------------------------------------------------------------------------AGATGCCTGCGCTTCATGTCCGAGTACA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CTACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAACATTTGACATT---------TTATATGA-----A--A-------------------------------C--------------------------------CT-------T---TTCCACTTTGAC-GGATATAAGTATGGAAAGACTC-----ACAAAATA--------------------------------AGCTTGCAAGGGTATACAATCATCGGCGCT-GTCGAAGTTAGCCCCGGCCCTCTGGTTTTTTCCTTCTTTTGCTTTAT------------------------CCTTTATT-------GTCTCATGCCAATT-----------------------------------------------------------------------------ACTACTGTCTGGT----------TCTTTTATTT---------------------------------------------------------------------------------------------------------------------------------------------TTTTTAC--AGATGCCTTCGCTTTATGTCTGAATACA--GTAGTTGTCTATTTC---AA-GG----------------------------------CTATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................T-GTCGAAGTTAGCCCCGGCCCTCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2691.7816012040
..................................................................................................................................................................................................................................T-GTCGAAGTTAGCCCCGGCCCTCTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2790.56501040
..................................................................................................................................................................................................................................T-GTCGAAGTTAGCCCCGGCCCTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................2590.44403010
...............................................................................................................................................................................................................................CGCT-GTCGAAGTTAGCCCCGGCCCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2660.33202000
..................................................................................................................................................................................................................................T-GTCGAAGTTAGCCCCGGCCCTCTGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2890.33303000
...............................................................................................................................................................................................................................CGCT-GTCGAAGTTAGCCCCGGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.29202000
..................................................................................................................................................................................................................................T-GTCGAAGTTAGCCCCGGCCCTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2490.22202000
..................................................................................................................................................................................................................................T-GTCGAAGTTAGCCCCGGCCCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2390.22201010
..................................................................................................................................................................................................................................T-GTCGAAGTTAGCCCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.18202000
...............................................................................................................................................................................................................................CGCT-GTCGAAGTTAGCCCCGGCCCTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2760.17101000
..................................................................................................................................................................................................................................T-GTCGAAGTTAGCCCCGGCCCTCTGGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................2980.13101000
.................................................................................................................................................................................................................................CT-GTCGAAGTTAGCCCCGGCCCTCTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................28160.06100010
droVir3
AAACTCG-G-CATTT--ACTATTTT-----CCCGGTA--C-TTCTTAGATAGGGG-----------CGAAGCAC----------------------TATGAGTA--------T--------------------------TATGGAAAGGTT-------------G--------------------------------GGTCTGCAAGGGTATTAGATCTTTGGCGT--GCCGAAGATATCAA-T-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTCGTTATTTCTTTATTTACTCACGGGTGCACTAAAAGTTTGTTAATTATTTATGCATATATATATTTATTTTT-------------------------------ATTTTA----------------TTT-----------------TTATTAT--TATTATTTTTT-TTTTTGTTAT--GTTT--GTATTTATGTGTTTT---GT-TG----------------------------------CTGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................TATTAGATCTTTGGCGT--GCCGAAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................26201.102200000000000000000000000001000000000110100000000000000000000000000
.................................................................................................................................................................................................................TATTAGATCTTTGGCGT--GCCGAAGATAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.501000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGGCGT--G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.357000000000000000000000000000700000000000000000000000000000000000
.........................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.306006000000000000000000000000000000000000000000000000000000000000
.........................................TTCTTAGATAGGGG-----------CGAAGCAC----------------------TATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.251000000000000000000000000000000000000100000000000000000000000000
..........................................TCTTAGATAGGGG-----------CGAAGCAC----------------------TAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.251000000000000000000000000000000000000000000000000000000000001000
...................................TA--C-TTCTTAGATAGGGG-----------CGAAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.251000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.204000000000000000000000000000000040000000000000000000000000000000
.................................................................................................................................................................................................................TATTAGATCTTTGGCGT--GCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000000030000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................GGGTATTAGATCTTTGGCGT--GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153000002000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TAGATCTTTGGCGT--GCCGAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000000000000000020000000000000000000000000
.................................................................................................................................................................................................................TATTAGATCTTTGGCGT--GCCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000001000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................TT-------------G--------------------------------GGTCTGCAAGGGTATTAGATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000000000000000000200000000000000000000000
.............................................................................................................................................TGGAAAGGTT-------------G--------------------------------GGTCTGCAAGGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.081000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................ATGGAAAGGTT-------------G--------------------------------GGTCTGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.061000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................GGTATTAGATCTTTGGCGT--GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000010000000000000000000000000000000000000000000000000000000
....TCG-G-CATTT--ACTATTTT-----CCCGGTA--C-T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................GCAAGGGTATTAGATCTTTGGCGT--GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................T-------------G--------------------------------GGTCTGCAAGGGTATTAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000010000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TAGATCTTTGGCGT--GCCGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000001000000000000000000000000000000
....TCG-G-CATTT--ACTATTTT-----CCCGGTA--C-TTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000010000000000000000000000000000000000
..............T--ACTATTTT-----CCCGGTA--C-TTCTTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
.......................TT-----CCCGGTA--C-TTCTTAGATAGGGG-----------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................AAAGGTT-------------G--------------------------------GGTCTGCAAGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000001000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TTAGATCTTTGGCGT--GCCGAAGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
.AACTCG-G-CATTT--ACTATTTT-----CCCGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
...................TATTTT-----CCCGGTA--C-TTCTTAGATAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................TATTAGATCTTTGGCGT--GCCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................GTCTGCAAGGGTATTAGATCTTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
...CTCG-G-CATTT--ACTATTTT-----CCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
....TCG-G-CATTT--ACTATTTT-----CCCGGTA--C-TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
........................T-----CCCGGTA--C-TTCTTAGATAGGGG-----------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
.......................TT-----CCCGGTA--C-TTCTTAGATAGGGG-----------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ATTAGATCTTTGGCGT--GCCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
..............T--ACTATTTT-----CCCGGTA--C-TTCTTAGATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................AAAGGTT-------------G--------------------------------GGTCTGCAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................TGCAAGGGTATTAGATCTTTGGCGT--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000010000000000000000000000000
............TTT--ACTATTTT-----CCCGGTA--C-TTCTTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000001000000000000000000000000000000000
....TCG-G-CATTT--ACTATTTT-----CCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000100000000000000000000000000000000000
....TCG-G-CATTT--ACTATTTT-----CCCGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000010000000000000000000000000000000
................................CGGTA--C-TTCTTAGATAGGGG-----------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
.....................TTTT-----CCCGGTA--C-TTCTTAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
.............TT--ACTATTTT-----CCCGGTA--C-TTCTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AAGGTT-------------G--------------------------------GGTCTGCAAGGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
...........ATTT--ACTATTTT-----CCCGGTA--C-TTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................GTCTGCAAGGGTATTAGATCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AAGGTT-------------G--------------------------------GGTCTGCAAGGGTATTAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................GGGTATTAGATCTTTGGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................CTGCAAGGGTATTAGATCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
GGTATAC-A-TTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGC-------------------CAAA-GTTGTGTAGTGATT-T-CT------------CGATCCTATCCTATAT------------------------TCCTTTTT-------GTCTCTTGCTAATT-----------------------------------------------------------------------------ATTTCTTGCAA---------------------------------------------------------------------------TATTGGTAATACTTT-------------------------------CCTTTT------------------------------------TCTTTAC--TAATACTTTTACCTTAAGATTTATTATA--AT------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................CAAA-GTTGTGTAGTGATT-T-...................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTAC--TAATACTTTTACCTTAAGAT........................................................................2760.171100000
droGri2
TGGTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGT--------------------------------------------------------------------------------------------------TTC--------------------------ATCCGAC--AGATGCTTGCGTTTCATGTCCGAGTACA--GTAGTTGCCTGTTTC---AA-GG----------------------------------CTATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
TTTTT-A-C-CAAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACAG--TTCTGT-----------TCTGTCTGTT---------------------------------------------------------------------------------------------------------------------------------------------TTCGTTC--AGATGCCTGCGCTTCATGTCTGAGTACA--GCAGCTGCCTGTTCC---AG-GG----------------------------------ATATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTTTTTT-T-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCACTTTTTGGTTTTTT---------------------------------------------------------------------------------------ATTTTTTTTTT---------------------------------------------------TTTCACTTTTTGGTTTT--TTTATTTTTT-----------------------------------------------TTTCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AATAATT-C-GATAT--GCC-----------------AAATTTCATAAGGATCGGTGAACTATATACGATCCGC----------------------TATATATCTAATAAT---------------------------------------------------ATAAGATGCGTGGCGCCACCTAGCGGACTGCGACTCAACTGCAAGGGTATATAAGTTTCGGCTCCGCCCGAAGTTAGCTTTCCTTTTCTTGTTTTTTTT---------------------------------------------TGTTTTTA----------------TTTTTATTTCTTTTTTTTTTTTACATAAAAACCTGCTTATTT---------------------------------TTTTGTATG-------------------------------------------------------------------------------TT----------TA----------------------------------------------TATTGTTTTTTGTTCTTTTTTT-------------------------TTTTT------ACA---TGAAAAAACTTGCC--------------------------------------------TATTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................TAATAAT---------------------------------------------------ATAAGATGCGTGGCGCCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.65130130000
........................................................................................................................................................................TGCGTGGCGCCACCTAGCGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.60120120000
..............................................................................................................................................................................................TGCGACTCAACTGCAAGGGTATATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.306060000
.............................................................................................................................................................................................CTGCGACTCAACTGCAAGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.153300000
............................................................................................................................................................................................................................CGGCTCCGCCCGAAGTTAGCTTTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153030000
.....TT-C-GATAT--GCC-----------------AAATTTCATAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.153003000
........................................................................................................................................................................................GCGGACTGCGACTCAACTGCAAGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153000003
....................................................................................................................................................................AAGATGCGTGGCGCCACCTAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102000002
..........................................TCATAAGGATCGGTGAACTATATACGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102200000
..................................................................................................................................................................ATAAGATGCGTGGCGCCACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102020000
.........................................TTCATAAGGATCGGTGAACTATATACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.......................................................................................................CTAATAAT---------------------------------------------------ATAAGATGCGTGGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.............................................................................................................................................................................................CTGCGACTCAACTGCAAGGGTATATAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
....................................................................................................................................................................AAGATGCGTGGCGCCACCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
.............................................................................................................AT---------------------------------------------------ATAAGATGCGTGGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
............................................................................................................................................................................TGGCGCCACCTAGCGGACTGCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
...................................................................GATCCGC----------------------TATATATCTAATAAT---------------------------------------------------ATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
..............................................................................................................................................................................GCGCCACCTAGCGGACTGCGACTCAACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051100000
droBip1
AATAAAT-T-GG-AT--TAT-----ATATTC-----ATATTTCCATAAGGATCGGCCAACTATATCCGAT----------------GTTTGCGA--TATATATCCG----------------GT--------------------------T-------------T--------------------------------AAACTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTAGCTTTC-CTTTCTTGTTTTTTTTTT-------------------------TTAAATTTTAATTTTTTTT-------GTATAAAAT-----------------------------------------------TTAATTGATAA----------------------------------------------------------------------------------------------------------------TT----------TA-----------------------------TATCATT--TTTACCGA----TTTTTT----------------TTTTAAT--CA-----------TTATTTTTTAAAA---TGTAAATATTT------------------------------------------------ATTTSizeHit CountTotal NormTotal
No Reads
droKik1
AAACATA-A-TAAGT--ATA---------------------------------GGTAAACTGTA-ATGAAACTCTATTTTGTGAGTGTTTTCAACATTTATATCT-ATAATATAAACATCAAAA--------------------------C-------------C--------------------------------AATCTGCAAGGGTATACAAACTTCGGCGT--GCCGAAGTTAGCTT-C-CTTTCTTGTTTGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCCTTT-A-------------------------------------------------------ATATAATTGTATTTTCTTTTTTAATATTTTAATATCATCCTCTCAT--------------------------ATTTTAT--ATATATTTTTGTTTTAGTTGTTCTCTGA--AACTATGTATGTTTT---CA-AA----------------------------------CTATGSizeHit CountTotal NormTotal
No Reads
droFic1
CGATGTTGTTTAGT---------CTTTGTGT-----A--T-------------------------------T--------------------------------CT-------G---T--------------------------------TCGAAATATTTGAT----------------------------------GACTGCAAGGGTATATAAGCTTCGGCTT--GCCGAAGCTAGCTT-C-CTTTCTTGTTGTATCA-----------------------------------------------------------AATCA-------------------------------------------------TTTACAATTTCTATTTTAGACCCATCAGTTTTAGTATGTGGTGTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTGGGTCTC--ACAGATATTCGTTTT-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAATACTCA-AGTAAATCAT----AATTTAA-----------------------------------------------------ATGTTTTCAAAA-------------------GT---------------ATTTA-----------ATTC-----ATGCAAT----------------------------------AGCTGCAAGGGTATATGATCTTCGGCTT--GCCGAAGTTTGCTT-T-CTTTCTTGTTGGTTCATA-----------TATCAACCTGCCTTTGAGATTTTTAT------TCTATTTG----------------GTATAAGTTCTTTATGTAAATGTCATATGAACCAATTGGTAA---------------------------------ACTTTTGTGATTTCA-----------ATTA----------------------------------------------------------------------------------------------------------------------------TTT-----------------TTGTTAT--AAATACTTCTG-TTAATGTCAG-GTAA-----GGTGGCATGTTCA---A--GG----------------------------------TATTCSizeHit CountTotal NormTotal
No Reads
droRho1
GAGTATT-A-AGAAT--GCA---TCATATGA-----------------------------------------------------ATAATTTT----------------------------------GGA-GAATATA-----------ATTT-----ACAGAGT---------------------------------TTTCTGCAAGGGTATATCAACTTTGGCTCCGCCCGAAGTTACCTTTC-CTTTCTTGTTTTATAA---------------ACAATTTGTTTTTCG-----------------------------------------------------------------------------------------------------------------------TGTGCTGACT------------------------------------------------------------------------------------------------------------------------------------------TATTTTTAGCTTTATTT----------------TGCTTAGGTTTCAT----------------TTAATGCGTTTTTAAGT-CGCTCCGATGGTTTAAATACAGTTAAATTCGTTATTTTAAGSizeHit CountTotal NormTotal
No Reads
droBia1
GAATATA-A-ATTTT--TATATTTT-----T-------------------------------------------------------------AAGA-------------------ATTTCGAATTCAATTTAATAAAATTATTGATTAT--------TTTTTAT----------------------------------AGCTGCAAGGGTATGCAAACTTCGGCTT--GCCGAAGTTAGCTT-C-CTTTCTTGTTTATTGT--------------------------------------------------------------AAACT-----------------------------------------------------------------------------------------------------------------------------TACGTTTACGTTA-----------------------------------------ATACGAAGTTAACTTCCTTTCTTGTTTTATATTATCTTCTCACCAA----ATTTTAAATTGTTCTTTTTATTTTGATAAAACGATAGTTGCAATTCAGAACTAATTAAGAAGTAGTTATG--TTTC---CAAGC----------------------------------GTAGASizeHit CountTotal NormTotal
No Reads
droTak1
AGAAATTTAACATT---------TT-----T---GTG--A----------------------------------------------------------------------TTTGTA--------------------A-----------ATTA-----ATACAAT---------------------------------GATCTGCAAGGGTATATAAGCTTCGGCTT--GCCGAAGCTAGCTT-C-CTTTCTTGTTTTTTAT---------------------------------------------T-----------------GCTTAATT------------------------------------------------------------------TCTGTTTAATATTGTTGAGGCA---------TTTTTATTT---------------------------------------------------------------------------------------------------------------------------------------------GT------------------TTTAACTCCTAAATAAA--TTAAATGTTGATTTA---------------------------------------------AASizeHit CountTotal NormTotal
No Reads
droEug1
TTTTATG-C-CGAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACAGAGCTCTGCT----------CCCCTCTGCTCTTCGGTTATTTGC----------------------------------------------------------------------------------------------------------------------------------------AGATGCCTGCGCTTCATGTCCGACTACA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CTATGSizeHit CountTotal NormTotal
No Reads
dm3
TTTTATG-C-CGAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACGGAGCTTTGCT----------TCTCTCCGCTCTCCGGTTATTTGC----------------------------------------------------------------------------------------------------------------------------------------AGATGCCTGCGCTTCATGTCCGAGTACA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CTACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTGC----------------------------------------------------------------------------------------------------------------------------------------AGATGCCTGCGCT...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CT...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCTCTCCGGTTATTTG.....................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGTCTGTTCC---AG-GG----------------------------------CT...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CTAC.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTCCGAGTACA--ACAGCTGTCTG...................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCATGTCCGAGTACA--ACA...........................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTACA--ACAGCTGTCTGTTC................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTTCATGTCCGAGTAC.................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTTTATG-C-CGAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACGGAGCTCTGCT----------CCTCTCCGCTCTCTGGTTATTTGC----------------------------------------------------------------------------------------------------------------------------------------AGATGCCTGCGCTTCATGTCCGAGTACA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CTACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCGAGTACA--ACAGCTGTCTGT..................................................2611.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGCTCTCTGGTTATTTG.....................................................................................................................................................................................................................................2011.00100100000000000000
droSec2
TTTTATG-C-CGAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACGGAGCTCTGCT----------CCTCTCCGCTCTCTGGTTATTTGC----------------------------------------------------------------------------------------------------------------------------------------AGATGCCTGCGCTTCATGTCCGAGTACA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CTACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GGGTATC-A-GATAG--TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAA-CTCGACTATAGCGT-T-CTCTCTTGTTTTTTCTAT------------------------------------TTTTTTTT-------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATATTTTTTTTCATGTTATTTTTTTTCCTTTTTTT----------------------------------------------------------------------------------------------------TGTTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....TC-A-GATAG--TCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGAA-CTCGACTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................25202.2545045000000000
.......................................................................................................................................................................................................................................GACTATAGCGT-T-CTCTCTTGTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................24200.20400400000000
........................................................................................................................................................................................................................................ACTATAGCGT-T-CTCTCTTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
droEre2
TTTTATG-C-CGAAT--GCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT-----------------------------------------------------------------------------ACGGAGCTCTGCTCCTCCCTGCTCCTCTCTGCTCTCCGGTTATTTGC----------------------------------------------------------------------------------------------------------------------------------------AGATGCCTGCGCTTCATGTCCGAGTACA--ACAGCTGTCTGTTCC---AG-GG----------------------------------CTACGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 07:36 AM