dwi_3599

Name	Class	Family	Strand
DNAREP1_DM	RC	Helitron	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGAGTCTACATACCAATTTGGTGGCTCTAGCTCATATAGTCTCTGAGATCTAGGTGTTCATACAGACGGACAAGGCTAGATGGACTCGGCTGTTCATGCTGATCTAGAATATATGTACATATATACTTTATGGGGTCGTTAAAGCTTCCTTCTGCCTGTTACATCAATTTTGCCGACTTATATATACCATTTCACCCTAAGGGTGCCGGGTGTAAAAAGGAGAGCAAGAAAATGGAAATGAAGGAACGAAA ************************************************..(((((..(((.((.(((.((((((.(((.(((...((((.......((.((..((.((((((....)))))).))..)).))........))))))).))))))).............))))).)))))..))))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V117 male body
...................................................AGGTGTTCATACAGACGGACAAGG................................................................................................................................................................................	24	0	1	1.00	1	1	0
.....................TGGCTCTAGCTCATATAGTCTC................................................................................................................................................................................................................	22	0	5	0.20	1	1	0
.......................................................................AAGGCAACATGGACCCGGC.................................................................................................................................................................	19	3	18	0.11	2	2	0
.......................................................................................................................................................................................................................AAAACAGAGCAAGAAATTGGAA..............	22	3	13	0.08	1	0	1

GCTCAGATGTATGGTTAAACCACCGAGATCGAGTATATCAGAGACTCTAGATCCACAAGTATGTCTGCCTGTTCCGATCTACCTGAGCCGACAAGTACGACTAGATCTTATATACATGTATATATGAAATACCCCAGCAATTTCGAAGGAAGACGGACAATGTAGTTAAAACGGCTGAATATATATGGTAAAGTGGGATTCCCACGGCCCACATTTTTCCTCTCGTTCTTTTACCTTTACTTCCTTGCTTT ************************************************..(((((..(((.((.(((.((((((.(((.(((...((((.......((.((..((.((((((....)))))).))..)).))........))))))).))))))).............))))).)))))..))))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	M020 head	V118 embryo	V119 head
.........................................AGACTCTAGATCCACAAGTATGTCTG........................................................................................................................................................................................	26	0	2	0.50	1	0	1	0	0
.CTCAGATGTATGGTTAAACCACCGAGA...............................................................................................................................................................................................................................	27	0	4	0.25	1	0	1	0	0
.................AACCACCGAGATCGAGTATATCAGA.................................................................................................................................................................................................................	25	0	5	0.20	1	1	0	0	0
............................................................................................................TATATACATGTATATATGAAATACCC.....................................................................................................................	26	0	5	0.20	1	1	0	0	0
................................................AGATCCACAAGTATGTCTGCCTGT...................................................................................................................................................................................	24	0	6	0.17	1	0	0	1	0
..............................................CTAGATCCACAAGTATGTCTGCCTGT...................................................................................................................................................................................	26	0	6	0.17	1	0	0	1	0
.................................................................TGCCTGTTCGGATCCTCCT.......................................................................................................................................................................	19	3	19	0.11	2	2	0	0	0
..................................................ATCCACAAGTGTGTCTGCCTGT...................................................................................................................................................................................	22	1	10	0.10	1	1	0	0	0
...........................................................................................................................................AGTTCGAGGGAAGACGGA..............................................................................................	18	2	20	0.10	2	2	0	0	0
.................................................................................................................................................................................................TGGTATTCCCAGGGCCTA........................................	18	3	19	0.05	1	0	0	0	1
..................ACCACCGGGCTCGAGTTTAT.....................................................................................................................................................................................................................	20	3	20	0.05	1	0	0	1	0
.........................................AGACTCTAGATCCACAAGTAT.............................................................................................................................................................................................	21	0	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004949:653629-653879 -	dwi_3599	CGAGTCTA--CATACCA---------ATTT-------------GGTGGCTCTAGCTCATATAGTC-TCTGAGATCTAGGTGTTCATAC------------AGACG-GACAAGGCTAGATGGACTCGGCTGTTCATGCTGATCTAGAATATATGTACATATATACTTTATGGGGTCGTTAAAGCTTCCTTCTGCCTGTTACATCAATT----T-T--GCCGACTTATATATACCATT--TCA-CCC------TAAGGGTGCCGGGTGTAA---AA---AGGAG-A---GC-----AAGAAA----AT-------------------GGAAAT----------GAAGGAACGAAA---
droVir3	scaffold_12966:9318-9565 +		AGCATCTA--CATCTAAA--------ATTT-------------CACGTCTCTAGCTCTTATAGGT-TCTGAGATCTG---------AC--------AGACAGACG-GACATGGCTAGATCGACTCGGCTATTGATGCTGATCAAGAATAT--------ATATACTTTATGAGGTCGGAGATGCTTCCTTCTGTCTGTTACACACATTTGGATTTTGGACAAATACAATATACCCTT--ATA-CCCATTTTTAATGGGTTCAGGGTATAA---AA---AGAAA-C-TAAAAT-----------AA--C-------AT--------------T----------ACAAAAAAAAAA---
droMoj3	scaffold_6576:2533-2777 -		CGAGTATG--CATGCCAA--------ATTT-------------CAGCTCTCTAGCTCTTATATCT-TCTGAGATCCTTTTGCTCATAC--------G----GACG-GACAGGGCTATATCGACTAAGCTCGTCGTCCTTATCAAGAATAT--------ATATACTTTATGGGGTCTGCGATGATTCCTTCTGCCTGTTACATACTTT----T-C---ACAAAACCATTATACCCTG--ATTTCCCATTTTCAATGGGCTCAGGGTATAA---TA---ATAAG-A---GA-CGAGA------------------------------GGAA------------AAAAAAACCAAA---
droGri2	scaffold_14853:9634542-9634796 -		AGAACCTG--TATGCCAA--------ATTT-------------GAAGTCTCTAGCTCTAATAGTC-TCTGAGATCTGCGTGTTCATACCG----ACGGACAGACG-GACATGACTATATCGACTCGCCTGTTGACGCTGATCAAGAATAT--------ATATACTTTATGGGGTCGGAAATGCTCCCTTCTGCCTGTTACATACATT----T-G--CACGAAACCATTATACCCTT--TTTACCCATTTGTAATGTGTTCAGGGTATAA---AA---AGTGC-TCTAAAGT-----------GA--AAGTT--------------------------------GAAAACTAAA---
dp5	XR_group8:2389733-2389989 +		GAAGTCTG--GATCCAAA--------ACAT-------------CGTTGCTCTACCTCGTATAGTC-TTTGAGCACTAGGCGCTAATAG--------GGACAGACA-GACAGGCCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATGTATGTATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCATTTTCACCCCAAATCTAATATACCCCA--ATA-CTCAT----TTTGAGTATCGGGTATAA---AA---ATTCG-C---GC-------------------------ATTACA----A-----------------GCGAGATAAGG---
droPer2	scaffold_3:6862841-6863098 +		GAAGTCTG--GATACAAA--------ATAT-------------CGTTGCTCTAGCTCTTATAGTC-GCTGAGCACTAGGCGCTCATAG--------GGACTGAAA-GACATGGCTCTATCGACTCGGCTATCGATGCTGATCGAGAATATACA----TATATACTTTATGGGGTCGGAAACGCTTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCCCTTATACCCCT--GTA-CTCAT----TTTGAGTATCGGGTATAA---AA---TGTAG-C-TTG-------TACAA---------------------ATAA-----T----------GAAATAGATAAA---
droAna3	scaffold_13034:2146739-2146987 -		GAAGTCTA--CATTTAAA--------ATCT-------------TATAGCCTTATCTTATATAGTC-TTTGAGATCCAAGCGATTATTCGGACAGACGATCAGACG-GACATGGCTATATCGCCTTAGCTGTTGATGTTGATCAAAAATAT--------ATATTCTTTATGGGGTCGGAGATGATTCCTTTTCGCTGTTACATACATT----C-A--CACGACTACAACATACGCTACGAGTACCCATCTT------------ATTATAA---TA---AAATA-A----ACA-----------AA--T------------------AGAATA----------GAACAAACCGTA---
droBip1	scf7180000393514:527-777 -		GGAATCTT--CATGCCAA--------ATCC-------------AATAGTTTTAACTCGTATAGATCTCAGAGATCGATGCGTTCATAC--------GGGCAGACG-GACATGGCTATATCGACTCGGCTGTTGATGCTGATCAAAAATAAAT------GTATACTTCATGGGTTCGGAGAGGATTCCCTTTCTATGTTATAATCATA----T-A--AACGAATAAAATATATCCTT--GTA-CTC------TATTAGTACCGGGTATAA---AA---AAAAA-C-TTG-------GGTATATTT--T------------A----A-----G----------AAAAAAACCAAA---
droKik1	scf7180000302297:13471-13688 +		GGAGACTA--TATGCAAA--------GTTT-------------CATTCAGATAGCTTTAAAA-----CTGAGG----GACGGACAGAC--------GGACAGACG-GACATGGCTAGATCGACTAGGCTATTGAAGCTGATCGAGAATAT--------ATATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAGCTTC----T-G--ACTGAAATTATAATACCCTG--C--------------------AAGGGTATAA---AA---ATGGA-A----ATA-----------TA--T------------A----A-----A----------AAAGAAA--CGA---
droFic1	scf7180000454042:6750-7005 -		GAATTCTT--TTAGAAGAAAGTAATAATTAGGAAGCTGAGGCCCTT---------TCATATAG-----------------GTTTGTAT--------GGA----AGCAGTGGGAGTAGATCGCCTCGTCTATCGGTCCTGATCAGGAATAT--------AAATACTGTATGGGGTTGCTAGTGCTTCCTTCTACCTGTAACACAGTTT----T-CACAAAAAATACATTACACCCTT--TT--TTC------TATGGGTAGTCGCTGGCAGAAAA---AAAGC-T-------ACGCAGGAA----AT-------------------AAGAGCGCCACCACTTCAAAGAGCGCAA---
droEle1	scf7180000491104:667768-668010 +		G-AATCTG--CATGCCAA--------GTTC-------------CAAATCTCTAGCTTTTATAGTT-TCCGAGATCTCGACGTTCATACAGACGGACAGACAGACG-GACATGGCTAGATCGACTCGGCTATTGATCCTGATCAAGAGTAT--------ATATACTTTATATGGTCGAAAGCGCTTCCTTTTACCTGTTACATACTTT----T-C--AACGAATTCAATATACCCTT--TTA-TTT------TACGAGTAACGGGTATAA---AA---AGAACGA---GC-----AA------------GCT------------------------------C----ATAAAAA---
droRho1	scf7180000775555:2040-2291 +		AGAATCTG--CATGCAAA--------ATGC-------------CAATCTTCTAGCTTTTATAGTT-TCCGAGATCTCAGCGTTCATAC--------GGACAGACG-GACATGGCTAGATCGACTCGGCTACTGATCCTGAACAAGAATAT--------ATATACTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACATACTTT----T-G--CACGAAAACAATATACCCTT--TTA-CTC------TACGAGTAACGGGTATAA---TA---AAAAA-G-AAA--------------------GTTCAAAACACAAA--------T----------AAAAAAATTAAG-AT
droBia1	scf7180000300043:1119-1368 +		GGAATCTG--CATGCCAA--------GTCT-------------GACGGTTCTAGCTTTTATAGTT-TCCGAGATCTCAGCCTTCATAA--------GGACAGACG-GACATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAGAATAT--------ATATACTTTATGGGGTCGGAAACGCTTCCTTTTACCTGTTACATACTTT----C-C--GACGAATCTAGTATACCCTT--TTA-CTC------TACGAGTAACGGGTATAA---TTATAACATT-C-------ATTAAGAAA----AT-------------------GTCAA------------CAGTGATGACA---
droTak1	scf7180000415113:8603-8848 -		AGAATCTG--CATGCAAA--------ATGT-------------CAATCTTCTAGCTTTTATAGTT-TCCGAGATCTCAGCGTTCATACAG----ACAGACAGACG-GGCATGTCTAGATCGACTCGGCTACTGATCCTGATCAAGAATAT--------ATATAGTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACATACTTT----T-G--CACGAATCTAATATACCCTT--TTA-CTT------TACGAGTAACGGGTATAA---AA---ACAAT-A---AAA--AGG-----------GGACT------------------------------G-ATAGAATAAA---
droEug1	scf7180000409001:558-787 +		GAA------------------------TTT-------------CAACTTTCTAGCTC-TATAGTT-TCTGAGATCTCAGCGTTTATAC--------GGACAGACG-GACACGGTTCAATCGACTTCGCTATTCATCCTGATCAAGAATAT--------ATATACTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTGACATACTTT----T-C--AACGAATCTAGTATACCCTT--TTA-CTC------TACGAGTAACGGCTTTAA---AA---TGAAT-A---GAAT-----------AA--T------------A----A-----T----------AAACAAGAGAAAGCG
dm3	chr3LHet:36718-36947 -		G-AATCTG--TATGCTGA----------------------------CCTTCTAGCTCTTATAGTT-CCTGAGATCTCGACGTTCATA----------------CG-GGCATGGCTAGAGAGACTCGTCTATTGATCCTGATAAAGAATAT--------ATATACTTTATATAGTCGGAAACGATTCCTTCTGCCTATTACATACTTT----T-C--AACTACTCTATTATACCATT--TTT-CTC------TATGAGTAACGGGTATAA---AT---ACTAA-T----C-----AACCAC----GT-------------------GTAAAT-----------GCAGGACTAAA---
droSim2	2r:4109532-4109777 -		A--ATCTG--TATGCTCT---TAA--CTAT-------------GCTAAACCTAGCTTTTATGGTT-CCTGAGATCTCGACGCTCATAC--------AGACAGACG-GACATGGCTCGATCGACTCGGCTATTGATCCTGATCAAGAATATATG----TATATACTTAATATAGTCGGAAACGCTTCCTTCTGCCTGTTACTTACTTT----T-C--AACGAATCTAGTATACCCTT--TTA-CTC------TACGAGTAACGGGTATAA---TA---ATGGA-A----AAT-----------AA--T------------A----G-----C----------AAAGAAACAAAA---
droSec2	scaffold_55:40191-40420 -		AAAAAATA--TCCAACAA--------A-------------------TATTCTAGCTTTTATAGTT-TCTGAGATCTCGACGTTCATAC--------AGACAGACG-GATATGGCCAGATCGACTCTGCT-TTGATCCTGATCAAGAATATATG----TATACACTCTATATGGTCGGAAACGATTCCTTCTGCCTGTAACA--CTGT----T-C--AACGAATTTAGTATACCCTT--TTA-CTC------TACGAGCAACGGGTATAA---AA---ATAAA-A---GG---------------------C------------------------------CAAAAATAGGAA---
droYak3	X:3315235-3315486 -		G-AGTCTG--TATGCTTA--------ATCT-------------CAACTTTCTAGCTTTTGTAGTT-CCTGAGATCTCGACGTTCATACGG----ACGGACAGACG-GACATGGCCAGATCGACTCGGCTATTGGTCCTGATCAAGAATAT--------ATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTT----T-C--AACGAATCTAGTATACCCTT--TTA-CTC------TACGAGTAACGGGTATAA---AA---AGAAG-A---AAAT-----------GA--GG------GTCGCAAA--------T----------AAAGCGAGGGAA---
droEre2	scaffold_4690:17886776-17887033 +		CAAGCTTGCTCATGCTTA--------ATTT-------------CAACATTCTAGCTTTTTTTTTT-CCTAAGATCGAGGCGTTCATACGG----ACGGACAAACG-GACATGGTCAGATCGACTCGGCTATTGATCCTGATCAAGAATATA---ATATATATACTTTATATGGTCGGAAACGTTTCATTCTGCCTGTTACAAACTTT----T-C--AACGAATCTAGTATACCCTT--TTA-CTC------TACGAGTAACGGATATAA---AA---ACCGT-T-------ACTCAGCAA----GT-------------------GGAAG------------TGGGAACGAAA---

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

CGAGTCTA--CATACCA---------ATTT-------------GGTGGCTCTAGCTCATATAGTC-TCTGAGATCTAGGTGTTCATAC------------AGACG-GACAAGGCTAGATGGACTCGGCTGTTCATGCTGATCTAGAATATATGTACATATATACTTTATGGGGTCGTTAAAGCTTCCTTCTGCCTGTTACATCAATT----T-T--GCCGACTTATATATACCATT--TCA-CCC------TAAGGGTGCCGGGTGTAA---AA---AGGAG-A---GC-----AAGAAA----AT-------------------GGAAAT----------GAAGGAACGAAA---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................AGGTGTTCATAC------------AGACG-GACAAGG...................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.............................................TGGCTCTAGCTCATATAGTC-TC................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0

droVir3

AGCATCTA--CATCTAAA--------ATTT-------------CACGTCTCTAGCTCTTATAGGT-TCTGAGATCTG---------AC--------AGACAGACG-GACATGGCTAGATCGACTCGGCTATTGATGCTGATCAAGAATAT--------ATATACTTTATGAGGTCGGAGATGCTTCCTTCTGTCTGTTACACACATTTGGATTTTGGACAAATACAATATACCCTT--ATA-CCCATTTTTAATGGGTTCAGGGTATAA---AA---AGAAA-C-TAAAAT-----------AA--C-------AT--------------T----------ACAAAAAAAAAA---	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................CAAGAATAT--------ATATACTTTATGAGGTC.....................................................................................................................................................................................	26	20	0.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................ACGTCTCTAGCTCTTATAGGT-TCTGAG............................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TCAAGAATAT--------ATATACTTTATGAGGTC.....................................................................................................................................................................................	27	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TCAAGAATAT--------ATATACTTTATGAGG.......................................................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TCTAGCTCTTATAGGT-TCTGAGATCT........................................................................................................................................................................................................................................................................................	26	15	0.27	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................CAAGAATAT--------ATATACTTTATGAGGT......................................................................................................................................................................................	25	20	0.25	5	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TCAAGAATAT--------ATATACTTTATGAGGT......................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................CAAGAATAT--------ATATACTTTATGAGGTCG....................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TAGCTCTTATAGGT-TCTGAG............................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................CAAGAATAT--------ATATACTTTATGAGG.......................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CGTCTCTAGCTCTTATAGGT-T.................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ATCAAGAATAT--------ATATACTTTATGAGG.......................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CTAGATCGACTCGGCTATTG...............................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TAGCTCTTATAGGT-TCTGAGATCT........................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................ATGCTGATCAAGAATAT--------ATATACTTT.............................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TGCTGATCAAGAATAT--------ATATACTTTA............................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................G---------AC--------AGACAGACG-GACATGGCTA................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
............................................................................................................................................TCAAGAATAT--------ATATACTTTATGAGGTCG....................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TCTCTAGCTCTTATAGGT-TCTGAGATCT........................................................................................................................................................................................................................................................................................	28	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................T-------------CACGTCTCTAGCTCTTATAG.....................................................................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................AAGAATAT--------ATATACTTTATGAGGTCG....................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TA-CCCATTTTTAATGGGTTCAGGGT...........................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TAT--------ATATACTTTATGAGGTC.....................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................AATGGGTTCAGGGTATAA---A...................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TCGGAGATGCTTCCTTCTGTCTT................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................GAATAT--------ATATACTTTATGAGGTC.....................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................ACATGGCTAGATCGACTCGGCT...................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................ATATACTTTATGAGGTCGGAGATG..............................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AGCTCTTATAGGT-TCTGAGATCT........................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TAGATCGACTCGGCTATTGATGCT..........................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TACTTTATGAGGTCGGAGATG..............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................AAGAATAT--------ATATACTTTATGAGGT......................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TA-CCCATTTTTAATGGGTTCAGGGTC..........................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GAGATGCTTCCTTCTGTCTGT...............................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CG-GACATGGCTAGATCGACTCGGCTAT.................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................GACATGGCTAGATCGACTC.......................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AGCTCTTATAGGT-TCTGAGAT..........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TGCTGATCAAGAATAT--------ATATACTT..............................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TGTTACACACATTTGGATTT..............................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................CAAGAATAT--------ATATACTTTATGAG........................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATTTTTAATGGGTTCAGGG............................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................GAATAT--------ATATACTTTATGAGGTCGGAG.................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTCCTTCTGTCTGTTACA...........................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................CTTCCTTCTGTCTGTTACA...........................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ATACAATATACCCTT--ATA-CCC...............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TAGATCGACTCGGCTATTGAT.............................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................ACTTTATGAGGTCGGAGATGC.............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GCTGATCAAGAATAT--------ATATACTTTAT...........................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TGCTTCCTTCTGTCTGTTACA...........................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TCGACTCGGCTATTGATGCTG.........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TGAGGTCGGAGATGCTTCCT........................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................GACATGGCTAGATCGACTCGG.....................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TATACTTTATGAGGTCGGAGATGC.............................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................ATCAAGAATAT--------ATATACTTTATGAGGT......................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTGTTACACACATTTGGATTTTG............................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TCAAGAATAT--------ATATACTTTATGAGGTT.....................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TTGATGCTGATCAAGAATAT--------ATATAC................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AT--------ATATACTTTATGAGGTCGG...................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GGAGATGCTTCCTTCTGTC..................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................AAGAATAT--------ATATACTTTATGAGGTC.....................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGAGTATG--CATGCCAA--------ATTT-------------CAGCTCTCTAGCTCTTATATCT-TCTGAGATCCTTTTGCTCATAC--------G----GACG-GACAGGGCTATATCGACTAAGCTCGTCGTCCTTATCAAGAATAT--------ATATACTTTATGGGGTCTGCGATGATTCCTTCTGCCTGTTACATACTTT----T-C---ACAAAACCATTATACCCTG--ATTTCCCATTTTCAATGGGCTCAGGGTATAA---TA---ATAAG-A---GA-CGAGA------------------------------GGAA------------AAAAAAACCAAA---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................TATATCGACTAAGCTCGTCGTCCTTAAA......................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................TG--ATTTCCCATTTTCAATGGGCTCAGG.............................................................................................	27	20	0.40	8	8	0	0	0	0	0
....................................................................................................................................................................TTTATGGGGTCTGCGATGATTC..........................................................................................................................................................................	22	20	0.40	8	8	0	0	0	0	0
.GAGTATG--CATGCCAA--------ATTT-------------CAGC.....................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	0	0	3	0
...........................................................................................................................................................................................................................................G--ATTTCCCATTTTCAATGGGCTCAGG.............................................................................................	26	20	0.10	2	2	0	0	0	0	0
CGAGTATG--CATGCCAA--------ATTT-------------CAGCT....................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................ACAAAACCATTATACCCTG--ATTT..................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
..............................................................................................................................................AAGAATAT--------ATATACTTTATGG.........................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.......................................................................GATCCTTTTGCTCATAC--------G----GACG-GA........................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..........................ATTT-------------CAGCTCTCTAGCTCTTA........................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................TTTTCAATGGGCTCAGGG............................................................................................	18	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................TGATTCCTTCTGCCTGTTACA...........................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droGri2

AGAACCTG--TATGCCAA--------ATTT-------------GAAGTCTCTAGCTCTAATAGTC-TCTGAGATCTGCGTGTTCATACCG----ACGGACAGACG-GACATGACTATATCGACTCGCCTGTTGACGCTGATCAAGAATAT--------ATATACTTTATGGGGTCGGAAATGCTCCCTTCTGCCTGTTACATACATT----T-G--CACGAAACCATTATACCCTT--TTTACCCATTTGTAATGTGTTCAGGGTATAA---AA---AGTGC-TCTAAAGT-----------GA--AAGTT--------------------------------GAAAACTAAA---	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................................TATACTTTATGGGGTCGGAAAC...............................................................................................................................................................................	22	9	0.11	1	1	0

dp5

GAAGTCTG--GATCCAAA--------ACAT-------------CGTTGCTCTACCTCGTATAGTC-TTTGAGCACTAGGCGCTAATAG--------GGACAGACA-GACAGGCCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATGTATGTATATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCATTTTCACCCCAAATCTAATATACCCCA--ATA-CTCAT----TTTGAGTATCGGGTATAA---AA---ATTCG-C---GC-------------------------ATTACA----A-----------------GCGAGATAAGG---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................CGATTCCTTCTGGACGTTACACACA.......................................................................................................................................................	25	20	4.90	98	0	98	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TCAT----TTTGAGTATCGGGTATAA---A...................................................................................	23	20	2.30	46	0	46	0	0	0	0	0	0	0	0
...........................................................ATAGTC-TTTGAGCACTAGGC....................................................................................................................................................................................................................................................................................	20	20	1.30	26	0	23	0	0	0	0	0	3	0	0
......................................................................................................................................TGCTGATCAAGAATATATGTATGTA.....................................................................................................................................................................................................	25	3	1.00	3	0	2	0	0	0	0	0	1	0	0
......................................................................................................................................TGCTGATCAAGAATATATGTATGT......................................................................................................................................................................................................	24	4	1.00	4	0	1	0	0	0	0	0	2	1	0
....................................................................................ATAG--------GGACAGACA-GACAGGCC..................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................TACCTCGTATAGTC-TTTGAGCACTAGG.....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTCCTTCTGGACGTTACACACAT......................................................................................................................................................	23	20	0.90	18	0	18	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TCAT----TTTGAGTATCGGGTATAA---AA---A..............................................................................	25	20	0.85	17	0	0	17	0	0	0	0	0	0	0
.....................................................................................................................................................................................GATTCCTTCTGGACGTTACACA.........................................................................................................................................................	22	20	0.75	15	0	15	0	0	0	0	0	0	0	0
....TCTG--GATCCAAA--------ACAT-------------CGTTGCTC.................................................................................................................................................................................................................................................................................................................	24	20	0.65	13	0	0	0	0	0	0	5	8	0	0
...................................................................................................................CAATCGACTCGGCTATTGA..............................................................................................................................................................................................................................	19	20	0.55	11	0	11	0	0	0	0	0	0	0	0
......................................................................................................................................TGCTGATCAAGAATATATGTATG.......................................................................................................................................................................................................	23	4	0.50	2	0	0	0	0	0	0	0	2	0	0
.........................................................................................................................................................................................CCTTCTGGACGTTACACACAT......................................................................................................................................................	21	20	0.50	10	0	10	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GGTCGGAAACGATTCCTTCTGGAC.................................................................................................................................................................	24	20	0.45	9	0	9	0	0	0	0	0	0	0	0
....TCTG--GATCCAAA--------ACAT-------------CGTTGCT..................................................................................................................................................................................................................................................................................................................	23	20	0.45	9	0	9	0	0	0	0	0	0	0	0
..............................................................................................................................................................ATATACTTTATGGGGTCGGAAACGA.............................................................................................................................................................................	25	20	0.40	8	0	8	0	0	0	0	0	0	0	0
..................................................................................................................TCAATCGACTCGGCTATTGAT.............................................................................................................................................................................................................................	21	20	0.40	8	0	8	0	0	0	0	0	0	0	0
......................................................................................................................TCGACTCGGCTATTGA..............................................................................................................................................................................................................................	16	20	0.35	7	0	0	0	0	0	0	0	7	0	0
.........................................................GTATAGTC-TTTGAGCACTAGGCG...................................................................................................................................................................................................................................................................................	23	6	0.33	2	0	1	0	0	0	0	0	0	1	0
.........................................................GTATAGTC-TTTGAGCACTAGGC....................................................................................................................................................................................................................................................................................	22	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..........................................................TATAGTC-TTTGAGCACTAGGCGC..................................................................................................................................................................................................................................................................................	23	20	0.30	6	0	0	6	0	0	0	0	0	0	0
..........GATCCAAA--------ACAT-------------CGTTGCTCT................................................................................................................................................................................................................................................................................................................	21	20	0.30	6	0	0	0	0	0	0	0	0	6	0
GAAGTCTG--GATCCAAA--------..........................................................................................................................................................................................................................................................................................................................................	16	20	0.30	6	0	0	0	0	0	0	0	0	6	0
.........................................................................................................................................................................GGGGTCGGAAACGATTCCTTCTGGAC.................................................................................................................................................................	26	20	0.30	6	0	6	0	0	0	0	0	0	0	0
.AAGTCTG--GATCCAAA--------ACAT-------------CGTTG....................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	5	0	0	0	0	0	0	0	0
............................................................TAGTC-TTTGAGCACTAGGCG...................................................................................................................................................................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
....TCTG--GATCCAAA--------ACAT-------------CGTTGCTCTAC..............................................................................................................................................................................................................................................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.....CTG--GATCCAAA--------ACAT-------------CGTTGCTCTA...............................................................................................................................................................................................................................................................................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...........................................................ATAGTC-TTTGAGCACTAGGCGC..................................................................................................................................................................................................................................................................................	22	20	0.20	4	0	0	4	0	0	0	0	0	0	0
............TCCAAA--------ACAT-------------CGTTGCTCTAC..............................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.....CTG--GATCCAAA--------ACAT-------------CGTTGC...................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	3	0	0	0	0
........................................................................................................................................................................TGGGGTCGGAAACGATTCCTTCTGGACG................................................................................................................................................................	28	20	0.15	3	0	0	0	0	0	0	3	0	0	0
...................................................................................................................................................................CTTTATGGGGTCGGAAACG..............................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	3	0	0	0
..............................................................................................................................GCTATTGATGCTGATCAAGA..................................................................................................................................................................................................................	20	20	0.15	3	0	2	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................TCAT----TTTGAGTATCGGGTATAA---AA---...............................................................................	24	20	0.15	3	0	0	0	0	0	0	0	3	0	0
................................................................................................................................TATTGATGCTGATCAAGAATA...............................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AAACGATTCCTTCTGGACGTTACAC..........................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.............................................................................................................................................................TATATACTTTATGGGGTCGGAAA................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TCTGGACGTTACACACATCC....................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0	0	0	0	0
........................................................................................................................GACTCGGCTATTGATGCTGATCAAG...................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................TGTATATACTTTATGGGGTCG....................................................................................................................................................................................	21	20	0.10	2	0	1	0	0	0	1	0	0	0	0
..........................................................................................................................................................ATGTATATACTTTATGGGGTC.....................................................................................................................................................................................	21	20	0.10	2	0	1	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................TA-CTCAT----TTTGAGTATCGG.............................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................TATACTTTATGGGGTCGGA..................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................TGCTGATCAAGAATATATGT..........................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..............................................................................................................................................................................................................................................ATA-CTCAT----TTTGAGTATCGG.............................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AATCTAATATACCCCA--ATA-CTC...............................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
......................................................................................................................................................................................................................................................T----TTTGAGTATCGGGTATAA---AA---AT.............................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................ATTCCTTCTGGACGTTACACAC........................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......G--GATCCAAA--------ACAT-------------CGTTGCTC.................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0
............TCCAAA--------ACAT-------------CGTTGCTCT................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................TTATGGGGTCGGAAACGATTCCTTCTG....................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TA-CTCAT----TTTGAGTATCGGGTATAA---A...................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TTGAGTATCGGGTATAA---AA---ATTCA-.........................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
......................................................................AGCACTAGGCGCTAATAG--------GGA.................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................CGATTCCTTCTGGACGTTACAC..........................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................TCGGAAACGATTCCTTCTGGACGTT..............................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................CTCAATCGACTCGGCTATTG...............................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.....................................................................GAGCACTAGGCGCTAATAG--------GG..................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................ATATACTTTATGGGGTCGGAAACGATT...........................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...GTCTG--GATCCAAA--------ACAT-------------CGTTGCT..................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................CTTTATGGGGTCGGAAACGAT............................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GATTCCTTCTGGACGTTACACACATCC....................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................TATGGGGTCGGAAACGATTCCTTCTGG...................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................ACTTTATGGGGTCGGAAACGATTC..........................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................ATGGGGTCGGAAACGATT...........................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................TCGACTCGGCTATTGATGCTG.........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..AGTCTG--GATCCAAA--------ACAT-------------CG.......................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
............TCCAAA--------ACAT-------------CGTTGCTCTA...............................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................GATGCTGATCAAGAATATA.............................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...GTCTG--GATCCAAA--------ACAT-------------CGTTGCTC.................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................AGTC-TTTGAGCACTAGGC....................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
GAAGTCTG--GATCCAAA--------ACAT-------------CGTTGCTC.................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	1	0	0	0	0	0	0
....................................................................TGAGCACTAGGCGCTAATAG--------GGAC................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ATCTAATATACCCCA--ATA-CT................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

GAAGTCTG--GATACAAA--------ATAT-------------CGTTGCTCTAGCTCTTATAGTC-GCTGAGCACTAGGCGCTCATAG--------GGACTGAAA-GACATGGCTCTATCGACTCGGCTATCGATGCTGATCGAGAATATACA----TATATACTTTATGGGGTCGGAAACGCTTCCTTCTGGACGTTACACACATCCACTTTTACCACAAATCCCTTATACCCCT--GTA-CTCAT----TTTGAGTATCGGGTATAA---AA---TGTAG-C-TTG-------TACAA---------------------ATAA-----T----------GAAATAGATAAA---	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................TTATAGTC-GCTGAGCACTAGGCGC..................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
................................................................................................................................................................ATACTTTATGGGGTCGGAAA................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0
.....................................................................................................................................................................................................................................................AT----TTTGAGTATCGGGTATAA---AA---TG.............................................................................	24	15	0.07	1	0	0	0	0	0	1
......................................................................................................................TCGACTCGGCTATCGATGCTG.........................................................................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0
.............................................................................................................................................................................TCGGAAACGCTTCCTTCTG....................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................GGACGTTACACACATCCACTT................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.......................................................................GCACTAGGCGCTCATAG--------GGAC................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................................GGAAACGCTTCCTTCTGGACG................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................TCTGGACGTTACACACATC.....................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0
.............................................................................................................ATGGCTCTATCGACTCGGCT...................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0

droAna3

GAAGTCTA--CATTTAAA--------ATCT-------------TATAGCCTTATCTTATATAGTC-TTTGAGATCCAAGCGATTATTCGGACAGACGATCAGACG-GACATGGCTATATCGCCTTAGCTGTTGATGTTGATCAAAAATAT--------ATATTCTTTATGGGGTCGGAGATGATTCCTTTTCGCTGTTACATACATT----C-A--CACGACTACAACATACGCTACGAGTACCCATCTT------------ATTATAA---TA---AAATA-A----ACA-----------AA--T------------------AGAATA----------GAACAAACCGTA---	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

GGAATCTT--CATGCCAA--------ATCC-------------AATAGTTTTAACTCGTATAGATCTCAGAGATCGATGCGTTCATAC--------GGGCAGACG-GACATGGCTATATCGACTCGGCTGTTGATGCTGATCAAAAATAAAT------GTATACTTCATGGGTTCGGAGAGGATTCCCTTTCTATGTTATAATCATA----T-A--AACGAATAAAATATATCCTT--GTA-CTC------TATTAGTACCGGGTATAA---AA---AAAAA-C-TTG-------GGTATATTT--T------------A----A-----G----------AAAAAAACCAAA---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGAGACTA--TATGCAAA--------GTTT-------------CATTCAGATAGCTTTAAAA-----CTGAGG----GACGGACAGAC--------GGACAGACG-GACATGGCTAGATCGACTAGGCTATTGAAGCTGATCGAGAATAT--------ATATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAGCTTC----T-G--ACTGAAATTATAATACCCTG--C--------------------AAGGGTATAA---AA---ATGGA-A----ATA-----------TA--T------------A----A-----A----------AAAGAAA--CGA---	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAATTCTT--TTAGAAGAAAGTAATAATTAGGAAGCTGAGGCCCTT---------TCATATAG-----------------GTTTGTAT--------GGA----AGCAGTGGGAGTAGATCGCCTCGTCTATCGGTCCTGATCAGGAATAT--------AAATACTGTATGGGGTTGCTAGTGCTTCCTTCTACCTGTAACACAGTTT----T-CACAAAAAATACATTACACCCTT--TT--TTC------TATGGGTAGTCGCTGGCAGAAAA---AAAGC-T-------ACGCAGGAA----AT-------------------AAGAGCGCCACCACTTCAAAGAGCGCAA---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

G-AATCTG--CATGCCAA--------GTTC-------------CAAATCTCTAGCTTTTATAGTT-TCCGAGATCTCGACGTTCATACAGACGGACAGACAGACG-GACATGGCTAGATCGACTCGGCTATTGATCCTGATCAAGAGTAT--------ATATACTTTATATGGTCGAAAGCGCTTCCTTTTACCTGTTACATACTTT----T-C--AACGAATTCAATATACCCTT--TTA-TTT------TACGAGTAACGGGTATAA---AA---AGAACGA---GC-----AA------------GCT------------------------------C----ATAAAAA---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGAATCTG--CATGCAAA--------ATGC-------------CAATCTTCTAGCTTTTATAGTT-TCCGAGATCTCAGCGTTCATAC--------GGACAGACG-GACATGGCTAGATCGACTCGGCTACTGATCCTGAACAAGAATAT--------ATATACTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACATACTTT----T-G--CACGAAAACAATATACCCTT--TTA-CTC------TACGAGTAACGGGTATAA---TA---AAAAA-G-AAA--------------------GTTCAAAACACAAA--------T----------AAAAAAATTAAG-AT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGAATCTG--CATGCCAA--------GTCT-------------GACGGTTCTAGCTTTTATAGTT-TCCGAGATCTCAGCCTTCATAA--------GGACAGACG-GACATGGCTAGATCGACTCGGCTAGTGATCCTGATCAAGAATAT--------ATATACTTTATGGGGTCGGAAACGCTTCCTTTTACCTGTTACATACTTT----C-C--GACGAATCTAGTATACCCTT--TTA-CTC------TACGAGTAACGGGTATAA---TTATAACATT-C-------ATTAAGAAA----AT-------------------GTCAA------------CAGTGATGACA---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGAATCTG--CATGCAAA--------ATGT-------------CAATCTTCTAGCTTTTATAGTT-TCCGAGATCTCAGCGTTCATACAG----ACAGACAGACG-GGCATGTCTAGATCGACTCGGCTACTGATCCTGATCAAGAATAT--------ATATAGTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTTACATACTTT----T-G--CACGAATCTAATATACCCTT--TTA-CTT------TACGAGTAACGGGTATAA---AA---ACAAT-A---AAA--AGG-----------GGACT------------------------------G-ATAGAATAAA---	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAA------------------------TTT-------------CAACTTTCTAGCTC-TATAGTT-TCTGAGATCTCAGCGTTTATAC--------GGACAGACG-GACACGGTTCAATCGACTTCGCTATTCATCCTGATCAAGAATAT--------ATATACTTTATAGGGTCGGAAACGCTTCCTTCTACCTGTGACATACTTT----T-C--AACGAATCTAGTATACCCTT--TTA-CTC------TACGAGTAACGGCTTTAA---AA---TGAAT-A---GAAT-----------AA--T------------A----A-----T----------AAACAAGAGAAAGCG	Size	Hit Count	Total Norm	Total
No Reads

dm3

G-AATCTG--TATGCTGA----------------------------CCTTCTAGCTCTTATAGTT-CCTGAGATCTCGACGTTCATA----------------CG-GGCATGGCTAGAGAGACTCGTCTATTGATCCTGATAAAGAATAT--------ATATACTTTATATAGTCGGAAACGATTCCTTCTGCCTATTACATACTTT----T-C--AACTACTCTATTATACCATT--TTT-CTC------TATGAGTAACGGGTATAA---AT---ACTAA-T----C-----AACCAC----GT-------------------GTAAAT-----------GCAGGACTAAA---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................TCTTATAGTT-CCTGAGATCTCGACGT..................................................................................................................................................................................................................................................................................	26	3	16.00	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	1	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	2	0	5	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	2	0	0	0	0	0	0
....................................................................TGAGATCTCGACGTTCATA----------------CG-GGC.......................................................................................................................................................................................................................................................	24	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0
.......................................................TCTTATAGTT-CCTGAGATCTCGACG...................................................................................................................................................................................................................................................................................	25	3	5.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................TCTTATAGTT-CCTGAGATCTCGACGTT.................................................................................................................................................................................................................................................................................	27	3	4.33	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................TTATATAGTCGGAAACGATTCCTTC......................................................................................................................................................................	25	9	4.22	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	1	0	2	0	0	0	0	1	2	1	0	2	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	4	0	1	0	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................ATAGTT-CCTGAGATCTCGACGTT.................................................................................................................................................................................................................................................................................	23	20	3.75	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	66	0	0	0	0	0	0
.............................................................AGTT-CCTGAGATCTCGACGTT.................................................................................................................................................................................................................................................................................	21	20	2.30	46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	11	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................TACTTTATATAGTCGGAAACGAT............................................................................................................................................................................	23	6	2.17	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................TATATAGTCGGAAACGATT...........................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................ATATAGTCGGAAACGATTCCT........................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................ATATAGTCGGAAACGATT...........................................................................................................................................................................	18	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATAGTCGGAAACGATT...........................................................................................................................................................................	17	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TATATAGTCGGAAACGATTCCAG.......................................................................................................................................................................	23	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TC------TATGAGTAACGGGTATAA---A...................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

A--ATCTG--TATGCTCT---TAA--CTAT-------------GCTAAACCTAGCTTTTATGGTT-CCTGAGATCTCGACGCTCATAC--------AGACAGACG-GACATGGCTCGATCGACTCGGCTATTGATCCTGATCAAGAATATATG----TATATACTTAATATAGTCGGAAACGCTTCCTTCTGCCTGTTACTTACTTT----T-C--AACGAATCTAGTATACCCTT--TTA-CTC------TACGAGTAACGGGTATAA---TA---ATGGA-A----AAT-----------AA--T------------A----G-----C----------AAAGAAACAAAA---	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................GACG-GACATGGCTCGATCGACTCGGC....................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................TGAGATCTCGACGCTCATAC--------AGAC................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................TT----T-C--AACGAATCTAGTATACCCTT--T.....................................................................................................................	25	20	0.75	15	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0
................................................................T-CCTGAGATCTCGACGCTCA...............................................................................................................................................................................................................................................................................	20	7	0.71	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTGATCAAGAATATATG----TATATACT...............................................................................................................................................................................................	27	5	0.60	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
.......................................................TTTTATGGTT-CCTGAGATCTCGACG...................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................TATACTTAATATAGTCGGAA.................................................................................................................................................................................	20	4	0.50	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TCTGCCTGTTACTTACTTT----T-C--AACGAA......................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................CG-GACATGGCTCGATCGACTCGGCTAA.................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................TCGACTCGGCTATTGATCCTGATCAAGA..................................................................................................................................................................................................................	28	20	0.45	9	0	0	0	0	0	0	0	0	8	0	0	0	1	0	0	0	0
......................................................................................................................TCGACTCGGCTATTGATCCTGATCAA....................................................................................................................................................................................................................	26	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	8	1	0	0	0
.............................................................................................................................................................................................................TT----T-C--AACGAATCTAGTATACCCT.........................................................................................................................	23	20	0.40	8	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TCGACTCGGCTATTGATCCTGATCA.....................................................................................................................................................................................................................	25	20	0.35	7	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0
....................................................................................................................GATCGACTCGGCTATTGATC............................................................................................................................................................................................................................	20	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
.....................................................................................................GACG-GACATGGCTCGATCGACTCGGCA...................................................................................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................TT----T-C--AACGAATCTAGTATACCCTT--TT....................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	3	0	0	0	0	0	0	3	0	0	0
..........................................................TATGGTT-CCTGAGATC.........................................................................................................................................................................................................................................................................................	16	7	0.29	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................ATTGATCCTGATCAAGAATATATG----T......................................................................................................................................................................................................	25	14	0.29	4	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0
...........................................................ATGGTT-CCTGAGATC.........................................................................................................................................................................................................................................................................................	15	7	0.29	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................ATGGTT-CCTGAGATCTCG......................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................ATGGTT-CCTGAGATCTCGA.....................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................ATGGTT-CCTGAGATCT........................................................................................................................................................................................................................................................................................	16	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................TCCTGATCAAGAATATATG----TATATACTT..............................................................................................................................................................................................	28	5	0.20	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TT----T-C--AACGAATCTAGTATACCCTT--TTA-..................................................................................................................	27	20	0.20	4	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
....................................................................................................................GATCGACTCGGCTATTGATCCTGA........................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0
.................................................................................................................................ATTGATCCTGATCAAGA..................................................................................................................................................................................................................	17	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TC------TACGAGTAACGGGTATAA---TA---AT.............................................................................	24	16	0.19	3	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TA-CTC------TACGAGTAACGGGTATAA---TA---A..............................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0
..........................................................................................................................CTCGGCTATTGATCCTGATCAAGAAT................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
...................................................................................................................CGATCGACTCGGCTATTGATCCTGATC......................................................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................TTTATGGTT-CCTGAGA...........................................................................................................................................................................................................................................................................................	16	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................TTATGGTT-CCTGAGA...........................................................................................................................................................................................................................................................................................	15	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................ATTGATCCTGATCAAGAATATATG----.......................................................................................................................................................................................................	24	16	0.13	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
.......................................................TTTTATGGTT-CCTGAGATCTCGACAA..................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................ATTGATCCTGATCAAGAATATATG----TAT....................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AATATAGTCGGAAACGCTTCC.........................................................................................................................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................TCCTGATCAAGAATATATG----TATAT..................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................TAC--------AGACAGACG-GACA......................................................................................................................................................................................................................................................	16	19	0.11	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................TT----T-C--AACGAATCTAGTATACCCTT--TTA-CT................................................................................................................	29	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATAGTCGGAAACGCTTCCTT.......................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................TCGACTCGGCTATTGATC............................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................TATAGTCGGAAACGCTTCCTTCT.....................................................................................................................................................................	23	20	0.10	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TAGTATACCCTT--TTA-CTC------TACGAGTAACGG.............................................................................................	30	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................ATCGACTCGGCTATTG...............................................................................................................................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................TCGGCTATTGATCCTGATCAAGA..................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..................................................................................TCATAC--------AGACAGACG-GACATGGCT.................................................................................................................................................................................................................................................	24	12	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................TAC--------AGACAGACG-GACATGGCT.................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................TAC--------AGACAGACG-GACATGG...................................................................................................................................................................................................................................................	19	13	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................TAC--------AGACAGACG-GACATGGC..................................................................................................................................................................................................................................................	20	13	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................TAC--------AGACAGACG-GACATGGCTT................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................TATTGATCCTGATCAAGAATATATG----.......................................................................................................................................................................................................	25	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................TAGTATACCCTT--TTA-CTC------TACGAGT..................................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................C--AACGAATCTAGTATACCCT.........................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TT----T-C--AACGAATCTAGTATACCCTT--......................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................TCATAC--------AGACAGACG-GA........................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................TCGGCTATTGATCCTGATCAAGAATAT..............................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................TCGGCTATTGATCCTGATCAAGT..................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TTT----T-C--AACGAATCTAGTATACCCT.........................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................TCGGCTATTGATCCTGATCAAGAATA...............................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TAGTCGGAAACGCTTCCTTCTGCCT.................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................TCGGCTATTGATCCTGATCAAGAAT................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TA-CTC------TACGAGTAACGGGTATAA---T...................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TT--TTA-CTC------TACGAGTAACGGG............................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................CGGCTATTGATCCTGATCAAG...................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CGACTCGGCTATTGATCCTGATC......................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TACGAGTAACGGGTATAA---TA---A..............................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GTATACCCTT--TTA-CTC------TACGAGTAACGGG............................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TA-CTC------TACGAGTAACGGGTATAA---TA---...............................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CGCTTCCTTCTGCCTG................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TATAGTCGGAAACGCTTCCTTCTGC...................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AAAAAATA--TCCAACAA--------A-------------------TATTCTAGCTTTTATAGTT-TCTGAGATCTCGACGTTCATAC--------AGACAGACG-GATATGGCCAGATCGACTCTGCT-TTGATCCTGATCAAGAATATATG----TATACACTCTATATGGTCGGAAACGATTCCTTCTGCCTGTAACA--CTGT----T-C--AACGAATTTAGTATACCCTT--TTA-CTC------TACGAGCAACGGGTATAA---AA---ATAAA-A---GG---------------------C------------------------------CAAAAATAGGAA---	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................TGAGATCTCGACGTTCATAC--------AGAC................................................................................................................................................................................................................................................................	24	7	0.29	2	0	0	2	0
...........................................................ATAGTT-TCTGAGATCTCGACGTTC................................................................................................................................................................................................................................................................................	24	10	0.10	1	0	0	1	0
................................................................T-TCTGAGATCTCGACGTTCAT..............................................................................................................................................................................................................................................................................	21	17	0.06	1	1	0	0	0
...........................................................ATAGTT-TCTGAGATCTCGACG...................................................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	1	0
....................................................AGCTTTTATAGTT-TCTGAGAT..........................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0
.........................................................TTATAGTT-TCTGAGATCTCGA.....................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1

droYak3

G-AGTCTG--TATGCTTA--------ATCT-------------CAACTTTCTAGCTTTTGTAGTT-CCTGAGATCTCGACGTTCATACGG----ACGGACAGACG-GACATGGCCAGATCGACTCGGCTATTGGTCCTGATCAAGAATAT--------ATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTT----T-C--AACGAATCTAGTATACCCTT--TTA-CTC------TACGAGTAACGGGTATAA---AA---AGAAG-A---AAAT-----------GA--GG------GTCGCAAA--------T----------AAAGCGAGGGAA---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................CT-------------CAACTTTCTAGCTTTTGTA......................................................................................................................................................................................................................................................................................................	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GAAACGCTTCCTTCTGCCTGTTACA...........................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TTTATATGGTCGGAAACGCTTCCTTC......................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................TGAGATCTCGACGTTCATACGG----A.....................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TA-CTC------TACGAGTAACGGGTATAA---AA---AGA............................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................TGGCCAGATCGACTCGGCTATTGGTC............................................................................................................................................................................................................................	26	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................GATCGACTCGGCTATTGGTCC...........................................................................................................................................................................................................................	21	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................GTTCATACGG----ACGGACAGACG-GACAT.....................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................ATATACTTTATATGGTCGGAAACGC.............................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................TACGG----ACGGACAGACG-GACATGGCCAGA..............................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................GACG-GACATGGCCAGATCGAC.........................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................ATACGG----ACGGACAGACG-GACAT.....................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................CG-GACATGGCCAGATCGACTCGGC....................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TTCCTTCTGCCTGTTACATACTTT----T-C--A...........................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

CAAGCTTGCTCATGCTTA--------ATTT-------------CAACATTCTAGCTTTTTTTTTT-CCTAAGATCGAGGCGTTCATACGG----ACGGACAAACG-GACATGGTCAGATCGACTCGGCTATTGATCCTGATCAAGAATATA---ATATATATACTTTATATGGTCGGAAACGTTTCATTCTGCCTGTTACAAACTTT----T-C--AACGAATCTAGTATACCCTT--TTA-CTC------TACGAGTAACGGATATAA---AA---ACCGT-T-------ACTCAGCAA----GT-------------------GGAAG------------TGGGAACGAAA---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................TACAAACTTT----T-C--AACGAATCTAGTA...............................................................................................................................	25	11	0.18	2	2	0	0	0	0	0	0
.............................................................................................................................................................................................................TT----T-C--AACGAATCTAGTATACCCTT--......................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	3

dwi_3599

scf2_1100000004949:653679-653829 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-30.1	-30.0	-29.9