ID:

dwi_3594

 Coordinate:

scf2_1100000004949:232926-233076 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.4 -28.4 -28.3

Flybase annnotation

CDS [Dwil\GK10569-cds]; exon [dwil_GLEANR_10762:4]; intron [Dwil\GK10569-in]

Repeatable elements

NameClassFamilyStrand
ISFUN1RCHelitron+
mature
  1. scf2_1100000010554:71-96 -
  2. scf2_1100000001433:632-657 -
  3. scf2_1100000010776:670-695 -
  4. scf2_1100000003616:1793-1818 -
  5. scf2_1100000014376:436-461 -
  6. scf2_1100000004378:16408-16433 -
  7. scf2_1100000004521:1665267-1665292 -
  8. scf2_1100000006989:674-699 -
  9. scf2_1100000004577:1294005-1294030 -
  10. scf2_1100000004597:11983-12008 -
  11. scf2_1100000004597:17436-17461 -
  12. scf2_1100000004943:4034713-4034738 -
  13. scf2_1100000004936:347012-347037 -
  14. scf2_1100000004954:638926-638951 -
  15. scf2_1100000004954:1071409-1071434 -
  16. scf2_1100000004958:1189302-1189327 -
  17. scf2_1100000004958:1974101-1974126 -
  18. scf2_1100000004967:4449238-4449263 -
  19. scf2_1100000004968:204395-204420 -
  20. scf2_1100000000719:938-963 -
  21. scf2_1100000005131:1014-1039 +
  22. scf2_1100000008022:997-1022 +
  23. scf2_1100000001406:1916-1941 +
  24. scf2_1100000004515:3854959-3854984 +
  25. scf2_1100000004585:1234135-1234160 +
  26. scf2_1100000004603:7005-7030 +
  27. scf2_1100000004854:116691-116716 +
  28. scf2_1100000004884:231919-231944 +
  29. scf2_1100000004888:257247-257272 +
  30. scf2_1100000004943:1979149-1979174 +
  31. scf2_1100000004902:52933-52958 +
  32. scf2_1100000004909:487095-487120 +
  33. scf2_1100000004909:579821-579846 +
  34. dwi_3594  scf2_1100000004949:233049-233074 +
  35. scf2_1100000004959:109213-109238 +
  36. scf2_1100000004961:1554600-1554625 +
  37. scf2_1100000004963:276426-276451 +
  38. scf2_1100000004965:31559-31584 +
  39. scf2_1100000004967:3387151-3387176 +
  40. scf2_1100000000620:5931-5956 +
  41. scf2_1100000010497:854-879 -
  42. scf2_1100000003166:1019-1044 -
  43. scf2_1100000014231:356-381 -
  44. scf2_1100000004511:11124688-11124713 -
  45. scf2_1100000007062:852-877 -
  46. scf2_1100000004729:509007-509032 -
  47. scf2_1100000004762:6068090-6068115 -
  48. dwi_4312  scf2_1100000004828:54239-54264 -
  49. scf2_1100000004822:1144334-1144359 -
  50. scf2_1100000004849:84635-84660 -
  51. scf2_1100000004887:150082-150107 -
  52. scf2_1100000004889:29027-29052 -
  53. scf2_1100000004943:3223788-3223813 -
  54. scf2_1100000004961:2024763-2024788 -
  55. scf2_1100000004961:2608221-2608246 -
  56. scf2_1100000004961:2613757-2613782 -
  57. scf2_1100000004961:2618802-2618827 -
  58. scf2_1100000004961:4945483-4945508 -
  59. scf2_1100000004963:364628-364653 -
  60. scf2_1100000007420:766-791 -
  61. scf2_1100000008194:1054-1079 -
  62. scf2_1100000003413:142-167 -
  63. scf2_1100000011584:427-452 -
  64. scf2_1100000003907:1176-1201 -
  65. scf2_1100000009082:303-328 -
  66. scf2_1100000006951:380-405 -
  67. scf2_1100000004514:1208750-1208775 -
  68. scf2_1100000004564:149222-149247 -
  69. scf2_1100000004590:340836-340861 -
  70. scf2_1100000004620:246273-246298 -
  71. scf2_1100000004620:265381-265406 -
  72. scf2_1100000004749:1508-1533 -
  73. scf2_1100000004887:40243-40268 -
  74. scf2_1100000004887:300007-300032 -
  75. scf2_1100000004943:9903628-9903653 -
  76. scf2_1100000004909:43287-43312 -
  77. scf2_1100000004949:1450545-1450570 -
  78. scf2_1100000004961:4520814-4520839 -
  79. scf2_1100000004968:2874335-2874360 -
  80. scf2_1100000000336:1666-1691 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCGGCCAACACACATGCACGCAACGTTGTCATCGTGGACCTTGCATTTCGGTAAGTTCAGAATTCTAATTAAGAATCACAATTTAAAATCATCAGTAATTGATTGTATTACGACTAAATTTTTCATGACCAAATGTATATCATCTTTTGTGTACATTATACCCTTGCAAAGGGTATTATAAAATTGGTCAGATGTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATC
**************************************************.((((((..((.((((.....))))))..)))))).(((((........)))))...((((((.((......((.((((((((((((((.((.....))))))))).((((((((...)))))))).......))))))))))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 V118
embryo
 M045
female body
.....CAACACACATGCACGCAACGTTGTCATCGT........................................................................................................................................................................................................................ 30 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................CACAGAAGGAGACGTTTCCGACCCCAT..................... 27 0 20 0.50 10 0 10 0
..................CGCGACGTTGTCTTGGTGGA..................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 1
.............................................................................................................................................................................TATTATAAAATTGGTCAGATGTTTGT.................................................... 26 0 20 0.20 4 4 0 0
...........................................................................................................................................................................GGTATTATAAAATTGGTCAGATGTTTG..................................................... 27 0 20 0.15 3 0 0 3
...........................................................................................................................................................................................................CACAGAAGGAGACGTTTCCGACCCCA...................... 26 0 20 0.15 3 0 3 0
............................................................................................................................................................................GTATTATAAAATTGGTCAGATGTTTG..................................................... 26 0 20 0.10 2 2 0 0
....................................................................................................................................................................................AAATTGGTCAGATGTTTGTAA.................................................. 21 0 20 0.05 1 0 1 0
..................................................................................................................................................................................TAAAATTGGTCAGATGTTTGTAACGCA.............................................. 27 0 20 0.05 1 0 0 1
..............................................................................................................................................................................................GATGTTTGTAACGCACAGAAGGAGACGT................................. 28 0 20 0.05 1 0 0 1
...............................................................................................................................................................................TTATAAAATTGGTCAGATGTT....................................................... 21 0 20 0.05 1 0 1 0

Anti-sense strand reads

CGCCGGTTGTGTGTACGTGCGTTGCAACAGTAGCACCTGGAACGTAAAGCCATTCAAGTCTTAAGATTAATTCTTAGTGTTAAATTTTAGTAGTCATTAACTAACATAATGCTGATTTAAAAAGTACTGGTTTACATATAGTAGAAAACACATGTAATATGGGAACGTTTCCCATAATATTTTAACCAGTCTACAAACATTGCGTGTCTTCCTCTGCAAAGGCTGGGGTATTTCATATATATAAGAACTAG
**************************************************.((((((..((.((((.....))))))..)))))).(((((........)))))...((((((.((......((.((((((((((((((.((.....))))))))).((((((((...)))))))).......))))))))))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V118
embryo
...............................................................................................................................................GAAAACACATGTAATATGGGAACGT................................................................................... 25 0 1 1.00 1 1 0 0
...............................................AGCAATTCAAGTGTTAAGA......................................................................................................................................................................................... 19 2 5 0.20 1 1 0 0
...............................................................................................................................................................................................................................TGGGGTATTTCATATATATAA....... 21 0 20 0.20 4 0 0 4
.......................................................................................TAGGCGTAATTAACTAACATAA.............................................................................................................................................. 22 3 5 0.20 1 0 1 0
.......................................................................................TAGGCGTAATTAACTAACATA............................................................................................................................................... 21 3 10 0.10 1 0 1 0
............................................................................................................................................................................................GTCTACAAACATTGCGTGTCT.......................................... 21 0 20 0.05 1 0 0 1
.............................................................................................................................................................................................TCTACAAACATTGCGTGTCTTCCTCTG................................... 27 0 20 0.05 1 1 0 0
.................................................................................................................................................................................................CAAACATTGCGTGTCTTCCTCT.................................... 22 0 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004949:232876-233126 + dwi_3594 GCGGCCAACACACATG-------------------------------CACGCAACGTTG---------------------------TCAT-----CGTGGA------------------------------------CCTT----------------------------GCATT-----------TCGGTAAGTTCAGAATTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAGAATCACAATTT-AA-----AATCA-----------TCAGTAATTGATTGTATTACGA----------------------------------------CTAAATTTTTCA-TGACCAAATGTATATCAT--------------C---TTT--------TGTGTACATTATACCC--------------TTGCA--A------A-------G-GGTATTATAA--A------------ATTGGTCAGAT----GTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATAT-ATATTCTTGATC
droVir3 scaffold_12928:7417947-7418188 + GGCCAA--GGCAGACT-------------------------------CATGCAAATGTT--------------------C------ACA-------------------------------------------------------------------CATTCCGAACCTTGAGATTCGGTTC---------------GTAAACCTGATTTT-----------------------------------------------------------------------------------------------------------------TCACATAATAAGTGTTTTTTTCTATTTCATTATAATCTAGAGAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------T--------------------------------------AATT----------------------------------------------------------------------CATAGCTTATACCCTGCACCCGTTAAAA--ATG--GGCAAATG-------G-GGTATAACGT--A------------TTTGTGCAAAT----GTATGTAACAGGCAGAAGAAAGCTTCTCCGACCCCATAAAGTATATTATATTCTTGATC
droMoj3 scaffold_6482:1115606-1115828 + GTGGTCAACGCGGACC---------------------------------TACATAC-----------CAAAT-----------------------TTCAGC--------TTTCTAGCT----------------------------CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA-------------------------------------------AACG-----------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------------------------------------------ATTTTTGGTAT--------ATCGGAAAATGCATT-------TTCCTTAA---GTGTTCCA----------A---------AATG--------------CATTTTTTATACCCTGAACCCATTTTCA--ATG--GGAAATCA-------G-GGTATAATGG--T------------TTT-GTTAAAT----GTATGTAACAGGCAGAAGGAGGCGTGACAGACCCCATAAAGTATAT-ATATTCTTGATC
droGri2 scaffold_15110:16565082-16565276 - ATTTTG-ATAATTATG-------------------------------TTTATAATGTTA---------------------------TCAT-----AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-------------------------------------------------------------------------------------------------G-------ACATTTTCAACCCTTAAGTGA-TATTCACACAATTATTTTTTATTACTATTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--------------CTTTTTTTATACTC--------------TTGCA--G------A-------G-GATATAATAA--T------------TTTGTCGTTAG----ATGTGC-ACGAATGAAAGGAGACGTCGACGAACCCGTATA-TTTAT-ATATTCTTGATG
dp5 3:16766976-16767200 - ACACAC---ACACACA-------------------------------CACACATGGGCA---------------------------TCGT-----AGATGC------------------------------------TTTTTTGGGAT------------------------------CAT---------------GAAAAACTAATAATGAAT-ATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGATACTTGATTTCTTAAAAGTAATTAAAAGTGATTT-------------------------------------------------CAA-------------------------------AATGAATAT---------------------------------------------------------------TG--------------------CCCAATATTAGATTTCTGGTGAAAGGTGTGGTGAAGGATGTGTGTGTAACACCCTGAAGGAATCGTTTCCGACCCCATAAAGTATAT-ATATTCTTGATC
droPer2 scaffold_92:125846-126097 - GCACCA-CCACATTAG-------------------------------TA-GCATAGGTG---------------------------CCGT-----CGAAGC------------------------------------CCTC------------------------------A--------TCTGCACTGAAATTTTAAAGTACTATTGAT-------------------------------------------------------------------------TAATCAAATTA-----------------------------------------------------------------------------------------------AATTAAATT----ACG-A------------------TT------------------------------------------------------------------------------------------------------------------------A--------------------------------------T--------A-----CTAAATAATCAAAT--CTATTCAA-AGA------------------------------A---------TGAA-ACATTTTTATACCCGATACTC---------AAAATG-------AGTATTG-GGGTATATTAGATTTTTGGTAAA-------AGTGGAT----GTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATAT-ATATTCTTGATC
droAna3 scaffold_13250:3347072-3347284 + ACAC-------ATGTG-------------------------------TACGTAACG-------------------------------------------------------------C-----CGAGCATTG---T-----------------------------------AGGTGGCTGC---------------AAAAAATTGGTGGCTAAA-A----------------------------------AATAAAATCGTTTGAGCCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------TTTGAAAAAAAAATT-------TTTTTTAAAAA-----------------------------ACAAAT-----------TTATTTTTATACCC--------------TTGCA--G------A-------G-GGTATTATAA--T------------TTTGGTCAAAA----GTGTGCAACGCATTGAAGGAGACATCTCCGACCCTATAAAGTATAT-ATATTCTTGATC
droBip1 scf7180000394835:11906-12142 - CACGAA---ACCTATT-------------------------------CATC---------------------------------------------AAGGCCCGGGCCCGGCCCGGCC-----CGT-----------CACGAAACTTATTTAAACAT----------------------------------ATTTCAAA------------------------------------------------------------ATTT-----------------------------------------------------------------------------------------------------------------AAAAGACATGTTATTTATGTATACAT-----------------------A-TATATAAGTTCATATTTATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTA---------AT---TCA--------TGTTTTTATTATACCC--------------TTGCA--G------A-------G-GGTATTATAA--T------------TTTGGTCAAAA----GTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT-ATATTCTTGATC
droKik1 scf7180000302476:2572439-2572669 + GTCAAC---ACATATG-------------------------------GCGGTAAGTTGG---------------------------CCT-------------------------AA----------------TTGTACTTT----------------------------CCA--------TTCGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCACATGCTACAAGTCCACAAAAATATGAATATGTATTT-AA-----TTTTA-----------TGAGAA-----------------------------------------------ATTCATA-------TTCTTTA-TAAGTAAACGT----------T---------AACA--------------GAATTTTTATACCC--------------TTGCA-----------------G-GGTATTATAA--T------------TTCAGTCAGAA----GTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATAT-ATATTCTTGATC
droFic1 scf7180000449838:1904-2176 + GTGGCGAGCACATGTG-------------------------------GATACATGTTTG---------------------------TCAC-----TTCTGG------------------------------------CTTCAAGCTGTTGTA-------------------------------------AAATCC-G------TAAAAATGAATTAATCTTTTTAATTTTTGTTTTCCAGTAATCTTTATTA-ATATCTACTAGATATAAAAGGAACTAATATTT-------------------------------------------------------------------------------------------AAATAAT------AAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTT---ATA------------------------------T---------TTAT-ATATTTTTATACCC--------------TTGCA--G-------AGCAAAA-GGGTATTATAA--T------------TTCAGTCAGAA----GTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATAT-ATATTCTTGATC
droEle1 scf7180000487077:597-839 - GCATGCAATGCT--CC-CAGAAATCATAGGGAAAATTGCAAGGAATTCTT----------------TCGGAAATCGGCT-----------CAGGA------ATCATT-----TCGAAATTCCTAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AA-----AAGCA-----------TTAGAAAT---------------TCAGCTTATAAACTTTTATTAA------------------------------------AATTTATATTAT----TAA-------C---AT-----------TTATTTTTATGCCC--------------TTGCA--G------A-------G-GGTATTATAA--T------------TTCAGTCAGAA----GTTTGCAACGCAGTGTAGTAGACATTTCCGACCCTATAAAGTATGT-ATATTCTTGATC
droRho1 scf7180000780245:28470-28711 + GCCATC---GCACAGT-------------------------------C----CAGA-------------------------------------------------------------C-----AGCGCCTTG---T-----------------------------------TATTGGGCAT---------------CTATACCGGGAAGCAGAT-A----------------------------------CA-ATAAAGATTAAAGCCAAAGGTAACCAATATTAAACAGATTG-----------------------------------------------------------------------------------------------AACTTGCTT----ATT-T------------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TTCTCTA-T--------------CAT--------------T---ACTTG-TCTTAG-ACATTTTTATACCC--------------TTGCA--G------A-------G-GGTATTATAA--T------------TTCAGTCAAAA----GTTTGCAACGCAGTGAAGGAGACATTTCCGACCCTATAAAGTATAT-ATATTCTTGATC
droBia1 scf7180000297012:15753-15999 + ACAGCTATTAAGCTTG-------------------------------CCCGCAACCTTA---------------------------TCAT-----TTTTTT------------------------------------TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTGATAAGTTTGTTTTGTGAA-------------------------------------------------------------------------TTATTGCCCTATTTTCATGCTCTAGGATTCTTGCCTGATTGTAGAAATCTACAAGAA----------------------------------------------------------------------------------------------------------TTTTGGC-AAG-----------------TTTGTCTACTGTT---TCTTG----------------TTGTGT--------------TTACA--G------A-------G-GGTACAATAA--T------------TTCAGACAGAA----GTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGAATAT-ATATTCTTGATC
droTak1 scf7180000415115:609553-609773 - TCGGCCA---CTTTTGTATGCATACACTG-----------------------------------------------AAAAATATAT----AGA-A------ATTA---------CA----------------TTA------------------------------------------------------TACTTTCAACATTTT-----------------------------------------------------------------------------------------------------------------------ACACATTTT------------------------------------------------------------ATGATTACAT-----------------------T-CATGT-------------------------------------------------------------------------------------------------------------------------A---TTATT----------------------------------------AATA-------TAAATTTTTAA-TAAC------------------------------A---------TTTT-ATATCATTATACCC--------------TTGCA--G------A-------G-GGTATTATGA--T------------TTCAGTCAGAA----GTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATAT-ATATTCTTGATC
droEug1 scf7180000409675:46220-46476 - CTGCTCAAC-CTCTTGTGTGTATTGATTG-----------------------------------------------GCAGTTTTAT----TTG-----------------------------------------------------------------------------CGTT-----------GCTGTAGGTTCATCAGCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGACAGTTGCTTTTT-AA-----TCTAGAAATGACTTCAGATATTGTTGTTTCATTTCCGA----------------------------------------TTAGATTTTTGG-ACAC----------------------------C---TT-------T-TAGCTTTGTTATACCCGTTAGTC---------GTA--G-------AGAAAAA-GGGTATACTAG--A------------TTCGTTGAAAA----GTATGTAATAGGTCGAAGGAAGCGTTTCCGACCCTATACAGTATAT-TTATTCTTGATT
dm3 chrX:22001956-22002183 - AGCACA----CATGTA-------------------------------CATATGAGTGTA------------TAATAGCTTATATAA----TAG--------------------------------------------------------------------------------G---------------GAATCTCAGAATTTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAAATTATTTTTT-AA-----TATTAACATGATAT-------------T--------------------------------------AATATATAAGTTATGCTTTCTAC---AGG------------------------------A---------CTGT-CTGTAATTATACCCGTTACTT---------GTA--T-------AGTACAA-GG-----------G------------TTCGTTGAAAT----GTATCTAACAGGCAGAAGAAAGCGTTTCCGACTATATAAAGTATAA-ATATTCTTGATC
droSim2 2r:3205822-3206050 + AACAC------ATATG-------------------------------CACGATCCTCTGTTACTGATTGAATATCTGCTTT---------TAGGG------AATGGT-----TCAAATCTTCTAGT----------------AACAGAA----TAA--------------------------------------------CAAT------------------------------------------------------CATTTG------------------------------AAAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------T--------------------------------------AAAATATAAG-------CTTTTAAA---G-------------------------------------------T-GTGCCGTTATACGCGTAACTC---------GTA--G-------AGTAAA--TGGTATTCTAG--A------------TTCGTTGAAGT----GTATGTAACAGGTATATGGAAGCGTTTCCGACCATATAATGTATAT-ACATTTTCGATC
droSec2 scaffold_6:481569-481755 - CATTTT---GATTAAT------------------------------TCAA-------------------------------------------------------------------------------------------------------TCA--------------------------------------------AATT------------------------------------------------------AATTTA------------------------------AAAAACATTAATTCTAGGACTTTTTAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCGAA-------TTTTTTG-TCA-----------------TTTGT-------C---AC-----------TTGTTTTTATTCCCGTAACTC---------GTA-----------------A-AGTAAACTAG--A------------TTTGTTGAAAA----TTGTGTAGCAGATAGAAGGAAACTTTTCCGACCACATAAAGTGT---ATATTCTTTATC
droYak3 v2_chrUn_2623:560-790 + CGCGCAAGATTGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GTTTAAGTTTATGTAAGCA-----------------------------------------------T------------------------------------------------------AATAT-----------------------------------------------------------------------------------------------------------------GAGAAGCATATTATGCTACTAT------------------------------------------------------------------------------------------------------------------------ATATATTT-GT-----TTCTC----------------------------------------------------------CGA-------------------------------GATATATATTATCCTT---------AG---TA-----------ATATTTTTATACCCGTTACTC---------GTA--G-------AGTAAAA-GGGTATACTAG--A------------TTCTTTGAAAA----GTATGTAACAGGCAGAAGGAACCTTTTCCGACCATATAAAGTATAT-ATATTTTTGATC
droEre2 scaffold_4929:25501673-25501901 - GAAACTAATAAAAATT-------------------------------CATGCAAGGTTG---------------------------TTGT-----CGTTT--------------AG-C-----GTAACGATT---T-----------------------------------GGGGTGCGGC---------------AATA-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTATTATAAATATTCAATTTTTGTTGTTTTAGTTA------------------------------------AATTTTTTTTTT----AAA-------T---TATTTTTTT--TGTGCCCATTTTAATC-----CC---------GTA--A-------AGTAAAA-CGGTATACTAG--A------------TTCGATGAAAA----ATATGTAACAAGTAGAAGGAAGCGTTTCCGACTATATAAAGTATAT-ATA---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GCGGCCAACACACATG-------------------------------CACGCAACGTTG---------------------------TCAT-----CGTGGA------------------------------------CCTT----------------------------GCATT-----------TCGGTAAGTTCAGAATTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAGAATCACAATTT-AA-----AATCA-----------TCAGTAATTGATTGTATTACGA----------------------------------------CTAAATTTTTCA-TGACCAAATGTATATCAT--------------C---TTT--------TGTGTACATTATACCC--------------TTGCA--A------A-------G-GGTATTATAA--A------------ATTGGTCAGAT----GTTTGTAACGCACAGAAGGAGACGTTTCCGACCCCATAAAGTATAT-ATATTCTTGATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....CAACACACATG-------------------------------CACGCAACGTTG---------------------------TCAT-----CGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAAGGAGACGTTTCCGACCCCAT......................27200.5010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATAA--A------------ATTGGTCAGAT----GTTTGT.....................................................26200.20400400
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTATAA--A------------ATTGGTCAGAT----GTTTG......................................................27200.15303000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAAGGAGACGTTTCCGACCCCA.......................26200.15300030
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTATAA--A------------ATTGGTCAGAT----GTTTG......................................................26200.10200200
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--A------------ATTGGTCAGAT----GTTTGTAA...................................................21200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA--A------------ATTGGTCAGAT----GTTTGTAACGCA...............................................27200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT----GTTTGTAACGCACAGAAGGAGACGT..................................28200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAA--A------------ATTGGTCAGAT----GTT........................................................21200.05100010
droVir3
GGCCAA--GGCAGACT-------------------------------CATGCAAATGTT--------------------C------ACA-------------------------------------------------------------------CATTCCGAACCTTGAGATTCGGTTC---------------GTAAACCTGATTTT-----------------------------------------------------------------------------------------------------------------TCACATAATAAGTGTTTTTTTCTATTTCATTATAATCTAGAGAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------T--------------------------------------AATT----------------------------------------------------------------------CATAGCTTATACCCTGCACCCGTTAAAA--ATG--GGCAAATG-------G-GGTATAACGT--A------------TTTGTGCAAAT----GTATGTAACAGGCAGAAGAAAGCTTCTCCGACCCCATAAAGTATATTATATTCTTGATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAT----GTATGTAACAGGCAGAAG.........................................25200.8517000010000000000000000000800000001070000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAT----GTATGTAACAGGCAGA...........................................23200.459000020100000000000000000400001100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGAAAGCTTC.................................2630.331000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGAAAGCTTCTCCGA............................2040.251000000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGAAAG.....................................22200.204000000001000000000000000000002000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAT----GTATGTAACAGGCAGAAGA........................................26200.102000000000000000000000000000000000020000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAT----GTATGTAACAGGCAGAAGAA.......................................27200.102000000000000000000000000001000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCCGACCCCATAAAGTA................20200.051000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAT----GTATGTAACAGG...............................................19200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAT----GTATGTAACAGGCAGAAGAAA......................................26200.051000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAT----GTATGTAACAGGCAGAAGAA.......................................26200.051000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCGACCCCATAAAGT.................18200.051000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAT----GTATGTAACAGGCAGAA..........................................24200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAT----GTATGTAACAGGCAGAAGAA.......................................25200.051000000000000000000000000000000000010000000000000000000000000000
droMoj3
GTGGTCAACGCGGACC---------------------------------TACATAC-----------CAAAT-----------------------TTCAGC--------TTTCTAGCT----------------------------CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA-------------------------------------------AACG-----------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------------------------------------------ATTTTTGGTAT--------ATCGGAAAATGCATT-------TTCCTTAA---GTGTTCCA----------A---------AATG--------------CATTTTTTATACCCTGAACCCATTTTCA--ATG--GGAAATCA-------G-GGTATAATGG--T------------TTT-GTTAAAT----GTATGTAACAGGCAGAAGGAGGCGTGACAGACCCCATAAAGTATAT-ATATTCTTGATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....TCAACGCGGACC---------------------------------TACATAC-----------CAAAT-----------------------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25207.7015415400000
....TCAACGCGGACC---------------------------------TACATAC-----------CAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23201.25252500000
....TCAACGCGGACC---------------------------------TACATAC-----------CAAAT-----------------------TTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28201.10222200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATT-------TTCCTTAA---GTGTTCCA----------A---------AAT......................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................CG-----------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------------------------------------------ATTTTTGGTAT--------ATCGGA................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-------TTCCTTAA---GTGTTCCA----------A---------AATG--------------C......................................................................................................................................................2511.001010000
.....................................................................................................................T----------------------------CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA-------------------------------------------AACG-----------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------------------------------------------ATTTTTGGTA...............................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTAT--------ATCGGAAAATGCATT-------T...............................................................................................................................................................................................................25110.738510002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTAT--------ATCGGAAAATGCATT-------TTC.............................................................................................................................................................................................................27110.182020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAT--------ATCGGAAAATGCATT-------TTCC............................................................................................................................................................................................................27110.182100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTAT--------ATCGGAAAATGCATT-------TTCC............................................................................................................................................................................................................26110.182200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAT--------ATCGGAAAATGCATT-------TTC.............................................................................................................................................................................................................26120.172000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTAT--------ATCGGAAAATGCATT-------................................................................................................................................................................................................................24120.172000011
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG--GGAAATCA-------G-GGTATAATGG--T------------..........................................................................23200.102200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------ATTTTTGGTAT--------ATCGGAAAATGC..........................................................................................................................................................................................................................25100.101100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAGGCGT..................................21200.102000020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGTAT--------ATCGGAAAATGCATT-------................................................................................................................................................................................................................25100.101100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGTAT--------ATCGGAAAATGCATT-------T...............................................................................................................................................................................................................26100.101100000
.................................................................................................CAGC--------TTTCTAGCT----------------------------CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA-------------------------------------------AACG-----------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------------------------------------------AT.......................................................................................................................................................................................................................................................29120.081100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAT--------ATCGGAAAATGCATT-------T...............................................................................................................................................................................................................24120.081100000
...............................................................................................TTCAGC--------TTTCTAGCT----------------------------CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA-------------------------------------------AACG-----------------------------------------------------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................27130.081100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTAT--------ATCGGAAAATGCATT-------................................................................................................................................................................................................................22130.081000010
...............................................................................................................TCTAGCT----------------------------CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA-------------------------------------------AACG-----------------------------------------------------------------------------------------------------------------------------------------------------TG-------------------------------------------------------AT.......................................................................................................................................................................................................................................................23150.071100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTAT--------ATCGGAAAA.............................................................................................................................................................................................................................18180.061000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAGGCGTGA................................24200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA--ATG--GGAAATCA-------G-GGT................................................................................................18200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCA--ATG--GGAAATCA-------G-G..................................................................................................19200.051100000
...............C---------------------------------TACATAC-----------CAAAT-----------------------TTCAGC--------TTTCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAGGCGTGA................................21200.051000010
..................................................................................................AGC--------TTTCTAGCT----------------------------CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACA-------------------------------------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATGG--T------------TTT-GTTAAAT----GTA........................................................22200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACCCCATAAAGTATAT-ATATTC......26200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG--GGAAATCA-------G-GGTATAATGG--T------------TTT-......................................................................26200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAGGCGTGACA..............................25200.051000001
....TCAACGCGGACC---------------------------------TACATAC-----------CAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCCATAAAGTATAT-ATATTCTT....24200.051100000
...................................................................CAAAT-----------------------TTCAGC--------TTTCTAGCT----------------------------CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
droGri2
ATTTTG-ATAATTATG-------------------------------TTTATAATGTTA---------------------------TCAT-----AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-------------------------------------------------------------------------------------------------G-------ACATTTTCAACCCTTAAGTGA-TATTCACACAATTATTTTTTATTACTATTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA--------------CTTTTTTTATACTC--------------TTGCA--G------A-------G-GATATAATAA--T------------TTTGTCGTTAG----ATGTGC-ACGAATGAAAGGAGACGTCGACGAACCCGTATA-TTTAT-ATATTCTTGATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
ACACAC---ACACACA-------------------------------CACACATGGGCA---------------------------TCGT-----AGATGC------------------------------------TTTTTTGGGAT------------------------------CAT---------------GAAAAACTAATAATGAAT-ATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGATACTTGATTTCTTAAAAGTAATTAAAAGTGATTT-------------------------------------------------CAA-------------------------------AATGAATAT---------------------------------------------------------------TG--------------------CCCAATATTAGATTTCTGGTGAAAGGTGTGGTGAAGGATGTGTGTGTAACACCCTGAAGGAATCGTTTCCGACCCCATAAAGTATAT-ATATTCTTGATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAATCGTTTCCGACCC.........................2190.3330300000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATAT-AT..........27200.3060600000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAATCGTTTCCGACCCCATAA....................2690.1110010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAATCGTTTCCGACCCCATAAA...................2790.1110100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCC........................19200.1020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTCCGACCCCATAAAG..................19200.1020200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGGAATCGTTTCCGACC..........................20150.0710100000000
droPer2
GCACCA-CCACATTAG-------------------------------TA-GCATAGGTG---------------------------CCGT-----CGAAGC------------------------------------CCTC------------------------------A--------TCTGCACTGAAATTTTAAAGTACTATTGAT-------------------------------------------------------------------------TAATCAAATTA-----------------------------------------------------------------------------------------------AATTAAATT----ACG-A------------------TT------------------------------------------------------------------------------------------------------------------------A--------------------------------------T--------A-----CTAAATAATCAAAT--CTATTCAA-AGA------------------------------A---------TGAA-ACATTTTTATACCCGATACTC---------AAAATG-------AGTATTG-GGGTATATTAGATTTTTGGTAAA-------AGTGGAT----GTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATAT-ATATTCTTGATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAA-------AGTGGAT----GTGTGTAACG.................................................22200.55110000011
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATTG-GGGTATATTAGA........................................................................................19200.102000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGTATAT-ATATTCTTGAT.21200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTAAA-------AGTGGAT----GTGTGT.....................................................22200.051000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTTTGGTAAA-------AGTG..................................................................22200.051010000
droAna3
ACAC-------ATGTG-------------------------------TACGTAACG-------------------------------------------------------------C-----CGAGCATTG---T-----------------------------------AGGTGGCTGC---------------AAAAAATTGGTGGCTAAA-A----------------------------------AATAAAATCGTTTGAGCCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------TTTGAAAAAAAAATT-------TTTTTTAAAAA-----------------------------ACAAAT-----------TTATTTTTATACCC--------------TTGCA--G------A-------G-GGTATTATAA--T------------TTTGGTCAAAA----GTGTGCAACGCATTGAAGGAGACATCTCCGACCCTATAAAGTATAT-ATATTCTTGATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------TTTGGTCAAAA----GTGTGCAACG.................................................22200.459009000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------TTGCA--G------A-------G-GGTATTATAA--T------------TTTGGTC...................................................................27200.255050000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCATTGAAGGAG......................................21200.102000011
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAAGGAGACATCTCCG.............................21200.102000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAAGGAGACATCTCCGACCCT........................26200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAAGGAGACATCTCCGACC..........................24200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCGACCCTATAAAGTATAT-A...........23200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATTGAAGGAGACATCTCCGAC...........................25200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGGAGACATCTCCGACCC.........................23200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAACGCATTGAAGGAG......................................20200.051000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATTGAAGGAGACATCTCC..............................22200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAA----GTGTGCAACGCATTGAAGG........................................24200.051000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATTGAAGGAGACATCTC...............................21200.051000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATTGAAGGAGACATCTCCGACCC.........................27200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----GTGTGCAACGCATTGAAGGAGACAT..................................27200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATACCC--------------TTGCA--G------A-------G-GGTAT..............................................................................................25200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCATTGAAGGA.......................................20200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCAAAA----GTGTGCAACGCAT..............................................22200.051000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCATTGAAGGAGACATCTCCGAC...........................26200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCAACGCATTGAAGG........................................18200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA--T------------TTTGGTCAAAA----GTGTGCAACGCAT..............................................28200.051000010
droBip1
CACGAA---ACCTATT-------------------------------CATC---------------------------------------------AAGGCCCGGGCCCGGCCCGGCC-----CGT-----------CACGAAACTTATTTAAACAT----------------------------------ATTTCAAA------------------------------------------------------------ATTT-----------------------------------------------------------------------------------------------------------------AAAAGACATGTTATTTATGTATACAT-----------------------A-TATATAAGTTCATATTTATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTA---------AT---TCA--------TGTTTTTATTATACCC--------------TTGCA--G------A-------G-GGTATTATAA--T------------TTTGGTCAAAA----GTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAT-ATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droKik1
GTCAAC---ACATATG-------------------------------GCGGTAAGTTGG---------------------------CCT-------------------------AA----------------TTGTACTTT----------------------------CCA--------TTCGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCACATGCTACAAGTCCACAAAAATATGAATATGTATTT-AA-----TTTTA-----------TGAGAA-----------------------------------------------ATTCATA-------TTCTTTA-TAAGTAAACGT----------T---------AACA--------------GAATTTTTATACCC--------------TTGCA-----------------G-GGTATTATAA--T------------TTCAGTCAGAA----GTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATAT-ATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droFic1
GTGGCGAGCACATGTG-------------------------------GATACATGTTTG---------------------------TCAC-----TTCTGG------------------------------------CTTCAAGCTGTTGTA-------------------------------------AAATCC-G------TAAAAATGAATTAATCTTTTTAATTTTTGTTTTCCAGTAATCTTTATTA-ATATCTACTAGATATAAAAGGAACTAATATTT-------------------------------------------------------------------------------------------AAATAAT------AAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTT---ATA------------------------------T---------TTAT-ATATTTTTATACCC--------------TTGCA--G-------AGCAAAA-GGGTATTATAA--T------------TTCAGTCAGAA----GTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATAT-ATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droEle1
GCATGCAATGCT--CC-CAGAAATCATAGGGAAAATTGCAAGGAATTCTT----------------TCGGAAATCGGCT-----------CAGGA------ATCATT-----TCGAAATTCCTAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AA-----AAGCA-----------TTAGAAAT---------------TCAGCTTATAAACTTTTATTAA------------------------------------AATTTATATTAT----TAA-------C---AT-----------TTATTTTTATGCCC--------------TTGCA--G------A-------G-GGTATTATAA--T------------TTCAGTCAGAA----GTTTGCAACGCAGTGTAGTAGACATTTCCGACCCTATAAAGTATGT-ATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droRho1
GCCATC---GCACAGT-------------------------------C----CAGA-------------------------------------------------------------C-----AGCGCCTTG---T-----------------------------------TATTGGGCAT---------------CTATACCGGGAAGCAGAT-A----------------------------------CA-ATAAAGATTAAAGCCAAAGGTAACCAATATTAAACAGATTG-----------------------------------------------------------------------------------------------AACTTGCTT----ATT-T------------------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TTCTCTA-T--------------CAT--------------T---ACTTG-TCTTAG-ACATTTTTATACCC--------------TTGCA--G------A-------G-GGTATTATAA--T------------TTCAGTCAAAA----GTTTGCAACGCAGTGAAGGAGACATTTCCGACCCTATAAAGTATAT-ATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droBia1
ACAGCTATTAAGCTTG-------------------------------CCCGCAACCTTA---------------------------TCAT-----TTTTTT------------------------------------TTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTGATAAGTTTGTTTTGTGAA-------------------------------------------------------------------------TTATTGCCCTATTTTCATGCTCTAGGATTCTTGCCTGATTGTAGAAATCTACAAGAA----------------------------------------------------------------------------------------------------------TTTTGGC-AAG-----------------TTTGTCTACTGTT---TCTTG----------------TTGTGT--------------TTACA--G------A-------G-GGTACAATAA--T------------TTCAGACAGAA----GTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGAATAT-ATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droTak1
TCGGCCA---CTTTTGTATGCATACACTG-----------------------------------------------AAAAATATAT----AGA-A------ATTA---------CA----------------TTA------------------------------------------------------TACTTTCAACATTTT-----------------------------------------------------------------------------------------------------------------------ACACATTTT------------------------------------------------------------ATGATTACAT-----------------------T-CATGT-------------------------------------------------------------------------------------------------------------------------A---TTATT----------------------------------------AATA-------TAAATTTTTAA-TAAC------------------------------A---------TTTT-ATATCATTATACCC--------------TTGCA--G------A-------G-GGTATTATGA--T------------TTCAGTCAGAA----GTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATAT-ATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droEug1
CTGCTCAAC-CTCTTGTGTGTATTGATTG-----------------------------------------------GCAGTTTTAT----TTG-----------------------------------------------------------------------------CGTT-----------GCTGTAGGTTCATCAGCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGACAGTTGCTTTTT-AA-----TCTAGAAATGACTTCAGATATTGTTGTTTCATTTCCGA----------------------------------------TTAGATTTTTGG-ACAC----------------------------C---TT-------T-TAGCTTTGTTATACCCGTTAGTC---------GTA--G-------AGAAAAA-GGGTATACTAG--A------------TTCGTTGAAAA----GTATGTAATAGGTCGAAGGAAGCGTTTCCGACCCTATACAGTATAT-TTATTCTTGATTSizeHit CountTotal NormTotal
No Reads
dm3
AGCACA----CATGTA-------------------------------CATATGAGTGTA------------TAATAGCTTATATAA----TAG--------------------------------------------------------------------------------G---------------GAATCTCAGAATTTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAAATTATTTTTT-AA-----TATTAACATGATAT-------------T--------------------------------------AATATATAAGTTATGCTTTCTAC---AGG------------------------------A---------CTGT-CTGTAATTATACCCGTTACTT---------GTA--T-------AGTACAA-GG-----------G------------TTCGTTGAAAT----GTATCTAACAGGCAGAAGAAAGCGTTTCCGACTATATAAAGTATAA-ATATTCTTGATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GTATCTAACAGGCAGAAGAAAGCGTT.................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACTATATAAAGTATAA-ATATTC......2621.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGAAAGCGTTTCC..............................24151.33200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100002010000000000000000000000000000000000000001000000100000002000000000100000000000000000000000000000000000000000000000000000000000000000000001000001200000000100000000000000002130000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGAAAGCGTTTC...............................23160.63100000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCGTTTCC..............................23170.59100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200001000000000000000000000000000000000000001000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000001010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTATTTTTT-AA-----TAT................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGAAAGCGTTTCCGAC...........................2790.4440000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCGTTTCCGA............................25140.4360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCGTTTC...............................22180.3970000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000001000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCGTTTCCGAC...........................26110.2730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATATAAAGTATAA-ATATT.......2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAAAGTATAA-ATATTCTTGATC2640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCGTTT................................21200.2550000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGAAAGCGTT.................................21190.2140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGAAAGCGTTTCCGACTAT........................2550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGAAAGCGTTTCCGACT..........................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGAAAGCGTTTCCGACTA.........................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACTATATAAAGTATAA-ATG.........2560.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGAAAGCGTTTCCGACTAT........................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGAAAGCGTTTCCGA............................26120.1720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCGTT.................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGAAAGCGTTTCCGAC...........................21160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAGTATAA-ATATTCTTG...2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGAAAGCGTTTCC..............................22180.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCG...................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGAAAGCGT..................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAGCGT..................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGAAAGCGTTTCC..............................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAAGCGTTTCCGACTATAT......................24110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGAAAGCGTTTCCGAC...........................25120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGAAAGCGTTTCCG.............................25140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGAAAGCGTTTCCG.............................21180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGAAAGCGTTTCCG.............................22180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGAAAGCGTTTCC..............................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGAAAGCGTTTC...............................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAAGCGTTTCCGAC...........................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTTTCCGACTATATAAAG..................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AACAC------ATATG-------------------------------CACGATCCTCTGTTACTGATTGAATATCTGCTTT---------TAGGG------AATGGT-----TCAAATCTTCTAGT----------------AACAGAA----TAA--------------------------------------------CAAT------------------------------------------------------CATTTG------------------------------AAAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------T--------------------------------------AAAATATAAG-------CTTTTAAA---G-------------------------------------------T-GTGCCGTTATACGCGTAACTC---------GTA--G-------AGTAAA--TGGTATTCTAG--A------------TTCGTTGAAGT----GTATGTAACAGGTATATGGAAGCGTTTCCGACCATATAATGTATAT-ACATTTTCGATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................TCCTCTGTTACTGATTGAATATCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2618.00800000022400000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTATATGGAAGCGTT.................................2517.00700000000007000000
.......................................................TCTGTTACTGATTGAATATCTGCTTT---------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00400000010021000000
...................................................................TGAATATCTGCTTT---------TAGGG------AATGGT-----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300000000003000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGCGTAACTC---------GTA--G-------AGTAAA--TGG.................................................................................................2713.00300000000003000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTATATGGAAGC....................................2212.00200000000002000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTATATGGAAGCGTTTC...............................2712.00200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCGTAACTC---------GTA--G-------AGTAAA--TGGTA...............................................................................................2712.00200000000002000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTATATGGAAGCGT..................................2412.00200100000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTATATGGAAGCGTT.................................1712.00200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGT----GTATGTAACAGGTATATGGA.......................................2612.00200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATATGGAAGCGTT.................................1612.00200000000002000000
..................................................................TTGAATATCTGCTTT---------TAGGG------AATGGT-----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---------GTA--G-------AGTAAA--TGGTATTCTAG--A------------..........................................................................2412.00200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTATATGGAAGCGTT.................................2111.00100000010000000000
.........................................................TGTTACTGATTGAATATCTGCTTT---------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA--TGGTATTCTAG--A------------TTCGTTGA..................................................................2411.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATATGGAAGCGTTTC...............................1811.00100000000001000000
............TATG-------------------------------CACGATCCTCTGTTACTGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAGCGTTTCCGACC..........................1911.00100000000001000000
...AC------ATATG-------------------------------CACGATCCTCTGTTACTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTATATGGA.......................................1911.00100000000001000000
...AC------ATATG-------------------------------CACGATCCTCTGTTACTGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
.............................................................ACTGATTGAATATCTGCTTT---------TAGGG------AA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
............................................................................GCTTT---------TAGGG------AATGGT-----TCAAATCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA--TGGTATTCTAG--A------------TTCGTTGAAG................................................................2611.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATTCTAG--A------------TTCGTTGAAGT----...........................................................2311.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGCGTTTCCGACCATATAATGT.................2611.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAGT----GTATGTAACAGGTA.............................................2511.00100000000001000000
............TATG-------------------------------CACGATCCTCTGTTACTGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAA--TGGTATTCTAG--A------------TTCGT.....................................................................2211.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------TTCGTTGAAGT----GTATG......................................................1711.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGTATATGGAAGCGTT.................................1911.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT----GTATGTAACAGGTATATGGAAGC....................................2711.00100000000001000000
............TATG-------------------------------CACGATCCTCTGTTACTGATTGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAGT----GTATGTAACAGGTATA...........................................2611.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTTATACGCGTAACTC---------GTA--G-------AGTA........................................................................................................2811.00100000010000000000
................................................................GATTGAATATCTGCTTT---------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA---G-------------------------------------------T-GTGCCGTTATACGCGTAAC....................................................................................................................................2511.00100000000001000000
............TATG-------------------------------CACGATCCTCTGTTACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGT----GTATGTAACA.................................................1511.00100000000001000000
....................................................TCCTCTGTTACTGATTGAATATCTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGT----GTATGTAACAGGTA.............................................1911.00100000000001000000
......................................................................................................ATGGT-----TCAAATCTTCTAGT----------------AACAGAA----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTTATACGCGTAACTC---------GTA--G-------A...........................................................................................................2511.00100000000100000000
.........................................................................................................................................................TAA--------------------------------------------CAAT------------------------------------------------------CATTTG------------------------------AAAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------T--------------------------------------AAAA.............................................................................................................................................................................................................................2511.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---------GTA--G-------AGTAAA--TGGTATTCTAG--A------------TT........................................................................2611.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--G-------AGTAAA--TGGTATTCT...........................................................................................1811.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--G-------AGTAAA--TGGTATTCTAG--A------------..........................................................................2111.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTATATGGAAGCG...................................2311.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAG-------CTTTTAAA---G-------------------------------------------T-GTGCCGTTATA............................................................................................................................................2511.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGTATATGGAAGCGTTT................................2011.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTATATGGAAGCGC..................................2411.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--G-------AGTAAA--TGGTATTCTAG--A------------TT........................................................................2311.00100000000001000000
...........ATATG-------------------------------CACGATCCTCTGTTACTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--G-------AGTAAA--TGGTATTCTAG--A------------TTCGT.....................................................................2611.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--G-------AGTAAA--TGGTAT..............................................................................................1520.50100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCTAG--A------------TTCGTT....................................................................17130.08100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGTTTCCGACC..........................15200.05100000000001000000
droSec2
CATTTT---GATTAAT------------------------------TCAA-------------------------------------------------------------------------------------------------------TCA--------------------------------------------AATT------------------------------------------------------AATTTA------------------------------AAAAACATTAATTCTAGGACTTTTTAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCGAA-------TTTTTTG-TCA-----------------TTTGT-------C---AC-----------TTGTTTTTATTCCCGTAACTC---------GTA-----------------A-AGTAAACTAG--A------------TTTGTTGAAAA----TTGTGTAGCAGATAGAAGGAAACTTTTCCGACCACATAAAGTGT---ATATTCTTTATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CGCGCAAGATTGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GTTTAAGTTTATGTAAGCA-----------------------------------------------T------------------------------------------------------AATAT-----------------------------------------------------------------------------------------------------------------GAGAAGCATATTATGCTACTAT------------------------------------------------------------------------------------------------------------------------ATATATTT-GT-----TTCTC----------------------------------------------------------CGA-------------------------------GATATATATTATCCTT---------AG---TA-----------ATATTTTTATACCCGTTACTC---------GTA--G-------AGTAAAA-GGGTATACTAG--A------------TTCTTTGAAAA----GTATGTAACAGGCAGAAGGAACCTTTTCCGACCATATAAAGTATAT-ATATTTTTGATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................TTG---------------------------TTTT-----TGTTAG------------------------------------GTTTAAGTTTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.501008000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCGTTACTC---------GTA--G-------AGTAAAA-GGGT................................................................................................27200.30600000000006
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTC---------GTA--G-------AGTAAAA-GGGTATACT...........................................................................................24200.20400400000000
....CAAGATTGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.15303000000000
......................................................................................................................................................TAAGCA-----------------------------------------------T------------------------------------------------------AATAT-----------------------------------------------------------------------------------------------------------------GAGAAGCATATTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................25170.12201100000000
..........TGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10201100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAG--A------------TTCTTTGAAAA----GT.........................................................21200.10200000020000
........................................................TTG---------------------------TTTT-----TGTTAG------------------------------------GTTTAAGTTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----GTATGTAACAGGCAGAAGGAAC.....................................23160.06100100000000
........................................................................................TT-----TGTTAG------------------------------------GTTTAAGTTTATGTAAGCA-----------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27160.06101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCCGACCATATAAAGTATAT-A...........25200.05100100000000
...GCAAGATTGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
....CAAGATTGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
.........TTGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
...............................................CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GTTTAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
............TATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
.......................................................................................TTT-----TGTTAG------------------------------------GTTTAAGTTTATGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000010000
......AGATTGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
......AGATTGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
........................................................TTG---------------------------TTTT-----TGTTAG------------------------------------GTTTAAGTTTATGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000010000
..........................................................G---------------------------TTTT-----TGTTAG------------------------------------GTTTAAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000
............TATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAAAA----GTATGTAACAGG...............................................21200.05101000000000
.........................................................TG---------------------------TTTT-----TGTTAG------------------------------------GTTTAAGTTTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTC---------GTA--G-------AGTAAAA-GGGTATAC............................................................................................23200.05100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGA.......................................19200.05100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAA----GTATGTAACAGGCAGAAGGA.......................................28200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAAAA----GTATGTAACAGGCAGAA..........................................26200.05100100000000
.........TTGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
..............TG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GTTTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
...............................................CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GTTTAAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
.........TTGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCATATAAAGTATAT-ATATTT......26200.05101000000000
..............TG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GTTTAAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
.........TTGTATG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100001000000
..............TG-------------------------------CGCG-----TTG---------------------------TTTT-----TGTTAG------------------------------------GTTTAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
droEre2
GAAACTAATAAAAATT-------------------------------CATGCAAGGTTG---------------------------TTGT-----CGTTT--------------AG-C-----GTAACGATT---T-----------------------------------GGGGTGCGGC---------------AATA-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTATTATAAATATTCAATTTTTGTTGTTTTAGTTA------------------------------------AATTTTTTTTTT----AAA-------T---TATTTTTTT--TGTGCCCATTTTAATC-----CC---------GTA--A-------AGTAAAA-CGGTATACTAG--A------------TTCGATGAAAA----ATATGTAACAAGTAGAAGGAAGCGTTTCCGACTATATAAAGTATAT-ATA---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAG--A------------TTCGATGAAA................................................................20150.0710000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAG--A------------TTCGATGAAAA----...........................................................19200.0510000010

Generated: 05/18/2015 at 07:34 AM