ID:

dwi_3583

 Coordinate:

scf2_1100000004947:635214-635364 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.6 -16.2 -16.1 -16.1

Flybase annnotation

CDS [Dwil\GK24056-cds]; exon [dwil_GLEANR_8072:4]; intron [Dwil\GK24056-in]; Antisense to intron [Dwil\GK24068-in]

No Repeatable elements found

mature
  1. scf2_1100000002391:4842-4868 +
  2. scf2_1100000004558:2264174-2264200 +
  3. scf2_1100000004813:57466-57492 +
  4. scf2_1100000004830:595887-595913 +
  5. scf2_1100000004909:671064-671090 +
  6. scf2_1100000004909:747232-747258 +
  7. scf2_1100000004952:279775-279801 +
  8. scf2_1100000004953:1077787-1077813 +
  9. scf2_1100000004954:149158-149184 +
  10. scf2_1100000004954:636406-636432 +
  11. scf2_1100000004955:132163-132189 +
  12. scf2_1100000004955:137393-137419 +
  13. scf2_1100000004958:1031752-1031778 +
  14. scf2_1100000004958:1031865-1031891 +
  15. scf2_1100000004961:1988495-1988521 +
  16. scf2_1100000004967:1514869-1514895 +
  17. scf2_1100000004967:2348468-2348494 +
  18. scf2_1100000004967:3228578-3228604 +
  19. scf2_1100000004967:3482034-3482060 +
  20. scf2_1100000004968:2097627-2097653 +
  21. scf2_1100000002407:740-766 -
  22. scf2_1100000004852:478063-478089 -
  23. scf2_1100000004887:298934-298960 -
  24. scf2_1100000004889:56420-56446 -
  25. scf2_1100000004943:424215-424241 -
  26. scf2_1100000004943:431545-431571 -
  27. scf2_1100000004943:3027274-3027300 -
  28. dwi_3583  scf2_1100000004947:635273-635299 -
  29. dwi_3585  scf2_1100000004947:636855-636881 -
  30. dwi_3587  scf2_1100000004947:640682-640708 -
  31. scf2_1100000004909:1166231-1166257 -
  32. scf2_1100000004930:114891-114917 -
  33. scf2_1100000004949:8482-8508 -
  34. scf2_1100000004953:481986-482012 -
  35. scf2_1100000004954:305310-305336 -
  36. scf2_1100000004954:2761480-2761506 -
  37. scf2_1100000004961:3871885-3871911 -
  38. scf2_1100000004961:3930324-3930350 -
  39. scf2_1100000004967:1752117-1752143 -
  40. scf2_1100000001035:8875-8901 -
star
  1. scf2_1100000012117:1037-1057 -
  2. scf2_1100000004595:163706-163726 -
  3. scf2_1100000009678:1097-1117 -
  4. scf2_1100000004887:227618-227638 -
  5. dwi_3583  scf2_1100000004947:635328-635348 -
  6. dwi_3585  scf2_1100000004947:636910-636930 -
  7. dwi_3587  scf2_1100000004947:640737-640757 -
  8. scf2_1100000004908:53286-53306 -
  9. scf2_1100000004909:631835-631855 -
  10. scf2_1100000004909:1166286-1166306 -
  11. scf2_1100000004949:8537-8557 -
  12. scf2_1100000004949:1225548-1225568 -
  13. scf2_1100000004953:530423-530443 -
  14. scf2_1100000004953:715144-715164 -
  15. scf2_1100000004954:2011086-2011106 -
  16. scf2_1100000004958:2508315-2508335 -
  17. scf2_1100000004961:3317309-3317329 -
  18. scf2_1100000004962:123873-123893 -
  19. scf2_1100000004963:941614-941634 -
  20. scf2_1100000004967:3104879-3104899 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAATACGTTTTTTCATGATCGCGTTTGGCAAAAATGATATATGCAATCGGTAGGAAATACTTCAGAGATTATGAATCCGAAAAATTTTTGAAATCGGTTAAGATTCATGGGTGCTAGAGGCGCCCAAAGTTGAGACATTTTTAGTGAAAAGGGAAAAATGGTAATTTTTAAAAAAAATCGCAACTTTATTAAGTTTTTTATTAATAGCATGTTTCATAAATTTTATTATTTAATTACTTAAATAGGTATT
******************************************************************(((............................(((..(((...((((((((...))))))))..)))..)))..)))************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body		 M020
head
...................................................................................................................TAGAGGCGCCCAAAGTTGAGACATTTT............................................................................................................. 27 0 20 0.90 18 18 0 0 0
.............................................................................................................................................................AATGGGAATTTTTAAAAAAA.......................................................................... 20 1 3 0.33 1 1 0 0 0
...........................................................................................................................................TTTTAGTGAAAAGGGAAAAAT........................................................................................... 21 0 5 0.20 1 1 0 0 0
...................TCGCGTTTGGCAAAAATGATATATGC.............................................................................................................................................................................................................. 26 0 20 0.15 3 0 2 1 0
..........TTTTCATGATCGCGTTTGGCAAAAAT....................................................................................................................................................................................................................... 26 0 20 0.15 3 0 3 0 0
.............................................................................................................................................................AATGGGAATTTTTAAAAA............................................................................ 18 1 9 0.11 1 1 0 0 0
....TACGTTTTTTCATGATCGCGTTTGG.............................................................................................................................................................................................................................. 25 0 20 0.10 2 0 2 0 0
.........TTTTTCATGATCGCGTTTGGCAAAAATGA..................................................................................................................................................................................................................... 29 0 20 0.10 2 0 2 0 0
.........TTTTTCATGATCGCGTTTGGCAAAAA........................................................................................................................................................................................................................ 26 0 20 0.10 2 0 2 0 0
......................................................................................................GATTCATGGGTGCTAGAGGC................................................................................................................................. 20 0 20 0.10 2 2 0 0 0
...........TTTCATGATCGCGTTTGGCAAAAA........................................................................................................................................................................................................................ 24 0 20 0.10 2 0 2 0 0
............TTCATGATCGCGTTTGGCAAAAAT....................................................................................................................................................................................................................... 24 0 20 0.10 2 0 2 0 0
..............................................................................................................................................................ATGGGAATTTTTAAAAAA........................................................................... 18 1 13 0.08 1 0 1 0 0
..........................................................................................................................................TTTATAGTGAAAAGGGAA............................................................................................... 18 1 17 0.06 1 1 0 0 0
.....................................................................................................................................................................................................TTTATTAATAGCATGTTTCATAAATTT........................... 27 0 20 0.05 1 1 0 0 0
............TTCATGATCGCGTTTGGCAAAGATGA..................................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0
.....................................................................................................................................................................................................TTTATTAATAGCATGTTTCAT................................. 21 0 20 0.05 1 1 0 0 0
..AATACGTTTTTTCATGATCGCGTT................................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0
.....................................................................................................AGATTCATGGGTGCTAGAGGG................................................................................................................................. 21 1 20 0.05 1 0 1 0 0
......................CGTTTGGCAAAAATGATATATGCAAT........................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0
...................TCGCGTTTGGCAAAAATGATATATGCA............................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
.............TCATGATCGCGTTTGGCAAAAATGA..................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
...................TCGCGTTTGGCAAAAATGATATA................................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0
.........TTTTTCATGATCGCGTTTGGCAAAAAT....................................................................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0
.............................................................................................................................CAAAGTTGAGACATTTTTAGTGAAAA.................................................................................................... 26 0 20 0.05 1 1 0 0 0
..............................................................................................................................AAAGTTGAGACATTTTTAGTGAAA..................................................................................................... 24 0 20 0.05 1 1 0 0 0
...........TTTCATGATCGCGTTTGGCAAAAATGA..................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
..................................................................AGATTATGAATCCGAAAAATT.................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
............TTCATGATCGCGTTTGGCAAAAATGA..................................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0
................................................................................................................TGCTAGAGGCGCCCAAAGTTG...................................................................................................................... 21 0 20 0.05 1 1 0 0 0
...........TTTCATGATCGCGTTTGGCAAAAATG...................................................................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 1
..........................................................TACTTCAGAGATTATGAATCCGAAAAAT..................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
....TACGTTTTTTCATGATCGCGCTTGG.............................................................................................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0
....TACGTTTTTTCATGATCGCGTTT................................................................................................................................................................................................................................ 23 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

TTTTATGCAAAAAAGTACTAGCGCAAACCGTTTTTACTATATACGTTAGCCATCCTTTATGAAGTCTCTAATACTTAGGCTTTTTAAAAACTTTAGCCAATTCTAAGTACCCACGATCTCCGCGGGTTTCAACTCTGTAAAAATCACTTTTCCCTTTTTACCATTAAAAATTTTTTTTAGCGTTGAAATAATTCAAAAAATAATTATCGTACAAAGTATTTAAAATAATAAATTAATGAATTTATCCATAA
*************************************************************************************************************(((............................(((..(((...((((((((...))))))))..)))..)))..)))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body
.....................................................................................................................CTCCGCGGGTTTCAACTCTGTAAAAAT........................................................................................................... 27 0 20 0.60 12 12 0 0 0
......GCAAAAAAGTACTAGCGCAAACCGTTTT......................................................................................................................................................................................................................... 28 0 20 0.50 10 5 5 0 0
...................................................ATCCTTTATGAAGTCTCTAATACT................................................................................................................................................................................ 24 0 20 0.50 10 0 10 0 0
.....................................................................................................................................TCTGTAAAAATCACTTTTCCCTTTTT............................................................................................ 26 0 4 0.50 2 0 2 0 0
...TATGCAAAAAAGTACTAGCGCAAACCGT............................................................................................................................................................................................................................ 28 0 20 0.30 6 2 4 0 0
............................................................................................................................GGTTTCAACTCTGTAAAAATCACTT...................................................................................................... 25 0 20 0.30 6 6 0 0 0
............................................................................................TTAGCCAATTCTAAGTACCCACGAT...................................................................................................................................... 25 0 4 0.25 1 0 1 0 0
.........................................................................................................................GCGGGTTTCAACTCTGTAAAAATCACTT...................................................................................................... 28 0 20 0.20 4 4 0 0 0
.............................................................................................................CCCACGATCTCCGCGGGTTTCAAC...................................................................................................................... 24 0 20 0.20 4 4 0 0 0
....................................................................................................................................................................TAAAAATTTTTTTTAGCGTTGAAAT.............................................................. 25 0 20 0.15 3 0 3 0 0
............................................................................................................ACCCACGATCTCCGCGGGTTTCAACT..................................................................................................................... 26 0 20 0.15 3 3 0 0 0
......GCAAAAAAGTACTAGCGCAAACCGTT........................................................................................................................................................................................................................... 26 0 20 0.15 3 0 3 0 0
..................................................................................................................GATCTCCGCGGGTTTCAACTCTGT................................................................................................................. 24 0 20 0.15 3 0 3 0 0
............................................................................................................................GGTTTCAACTCTGTAAAAATCACTTT..................................................................................................... 26 0 20 0.10 2 2 0 0 0
..............................................................................................................CCACGATCTCCGCGGGTTTCAACTCTGT................................................................................................................. 28 0 20 0.10 2 0 2 0 0
....ATGCAAAAAAGTACTAGCGCAAACCGT............................................................................................................................................................................................................................ 27 0 20 0.10 2 0 2 0 0
.........AAAAAGTACTAGCGCAAACCGTTTT......................................................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0
.................................................................CTCTAATACTTAGGCTTTTTAAAAACT............................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0
..........................................................................................................................CGGGTTTCAACTCTGTAAAAATCACTT...................................................................................................... 27 0 20 0.10 2 2 0 0 0
..................TAGCGCAAACCGTTTTTACTATAT................................................................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0
....................................................TCCTTTATGAAGTCTCTAATACT................................................................................................................................................................................ 23 0 20 0.10 2 2 0 0 0
...TATGCAAAAAAGTACTAGCGCAAACC.............................................................................................................................................................................................................................. 26 0 20 0.10 2 2 0 0 0
................................................................................................................ACGATCTCCGCGGGTTTCAACTCTGT................................................................................................................. 26 0 20 0.10 2 2 0 0 0
.................................................................................................................CGATCTCCGCGGGTTTCAACTCTGT................................................................................................................. 25 0 20 0.10 2 2 0 0 0
.........................................................................................................................................................................................................AATTATCGTACAAAGTATTTAAAAT......................... 25 0 20 0.10 2 0 2 0 0
..................................................................................................................GATCTCCGCGGGTTTCAACTCTGTAAA.............................................................................................................. 27 0 20 0.10 2 2 0 0 0
........................................................................................................................CGCGGGTTTCAACTCTGTAAAAAT........................................................................................................... 24 0 20 0.10 2 0 2 0 0
.......................................................................................................................................................................................................ATAATTATCGTACAAAGTATTTAAAAT......................... 27 0 20 0.05 1 0 1 0 0
..............................................................................................................CCACGATCTCCGCGGGTTTCAACT..................................................................................................................... 24 0 20 0.05 1 0 0 1 0
.........................................................................................................................................................................................................AATTATCGTACAAAGTATTTAAAA.......................... 24 0 20 0.05 1 1 0 0 0
.....................................................................................................................CTCCGCGGGTTTCAACTCTGT................................................................................................................. 21 0 20 0.05 1 1 0 0 0
.......................................................................................................................CCGCGGGTTTCAACTCTGTAAA.............................................................................................................. 22 0 20 0.05 1 0 0 1 0
......GCAAAAAAGTACTAGCGCAAACCGTTT.......................................................................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0
...................................................................CTATTACTTAGGCTTGTT...................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0
...........................................................................TAGGCTTTTTAAAAACTTTAG........................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0
....................GCGCAAACCGTTTTTACTATATACGT............................................................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0
....................................................................TAATACTTAGGCTTTTTAAAAACTT.............................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0
......................................................................................................................................................................................................AATAATTATCGTACAAAGTATTTAA............................ 25 0 20 0.05 1 1 0 0 0
...TATGCAAAAAAGTACTAGCGCAAACCG............................................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
........................................................................................................................CGCGGGTTTCAACTCTGTAAAAATC.......................................................................................................... 25 0 20 0.05 1 1 0 0 0
...................AGCGCAAACCGTTTTTACTATATACGT............................................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0
..................................................................................................................GATCTCCGCGGGTTTCAACTCTGTAA............................................................................................................... 26 0 20 0.05 1 1 0 0 0
.....................................................CCTTTATGAAGTCTCTAATACTTAGGCT.......................................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
......................................................................................................................TCCGCGGGTTTCAACTCTGTAAA.............................................................................................................. 23 0 20 0.05 1 0 0 1 0
...............TACTAGCGCAAACCGTTTTTACTAT................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
..................................................................TCTAATACTTAGGCTTTTTAAAAACT............................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
................ACTAGCGCAAACCGTTTTTACTATAT................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
.....................CGCAAACCGTTTTTACTATATACGT............................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0
...................................................ATCGTTTATGAAGTCTCTAATACT................................................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0
........AAAAAAGTACTAGCGCAAACCGT............................................................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0
......................................................................................................................TCCGTGGGTTTCAACTCTGTAAAAAT........................................................................................................... 26 1 20 0.05 1 1 0 0 0
.........................................................TATGAAGTCTCTAATACTTAGGCTT......................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
...................................................ATCATTTATGAAGTCTCTAATACT................................................................................................................................................................................ 24 1 20 0.05 1 0 1 0 0
.................................................................CTCTAATACTTAGGCTTTTTAAAAAC................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0
...................................................................CTAATACTTAGGCTTTTTAAAAAC................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0
............................................................................................................ACCCACGATCTCCGCGGGTTTCAA....................................................................................................................... 24 0 20 0.05 1 1 0 0 0
.................................................................................................................CGATCTCCGCGGGTTTCAA....................................................................................................................... 19 0 20 0.05 1 0 0 0 1
...TATGCAAAAAAGTACTAGCCCAAACCGT............................................................................................................................................................................................................................ 28 1 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004947:635164-635414 - dwi_3583 AAAATACGTTTTTTCATG---ATCGCGT--------TTGGCAAAAATGATATAT-GCAATCGGTAGGAAATACTTCAGAGATTATGAATCCGAAAAATTTTTGAA-ATCGGTTAAGATTCATGGGTGCTAGAGGCGCCCAAA--GTT-GAGACATT-TTTAGTG---AAAAGGGAAAAATGG---TAA-TTTTTAAAAAAAATCGCAA-CTTTATTAAGTTTTTTATTAATAGCATGTTTCATAAATTTTATT----------------------ATTTAATTACTTAAATAGGTATT
droVir3 scaffold_12769:2078-2143 + TTTATTTAGTTATTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTATTTATTTATTTATTT----------------------ATTTATTTATTTATATATATATT
droMoj3 scaffold_6680:9745377-9745602 - AAAATCAAAAAAGGTACTTTAAGCGATT--------TTAAAAAAGTTGA----TGTCATATGAAAATAAATCGATCTACTGGTTTGTAGCCGAAAGATTTTTGAAAATCGGTCAATTTTTAGGGTAGTTATAGCCCTTCAAA--ATTTGGGAAAGTCG---CAAAGTTGTG--AAAAGCAGC---GAG-TTTTTGTGAAAAATATCCCAC-TTGTCAATTGAATTGTAGGAAAAATCTTGCACCAATTT------------------------------------------------T
droPer2 scaffold_201:29277-29325 - ACA-------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTCAATG---AAAATGAGAGAAAGG---AGA-TTTTCACAATCAAACACAA------------------------------------------------------------------------------------------
droKik1 scf7180000300816:1389-1618 + AAAATCATATCTTTTGATCCAAA----TAAGGCAATCGAATAATTTAAA----CGGCATTGGACAGATAATTGTTGTAAAATGTATA--------------------TATGTACTGCAT----AAAGTAC--CACGCCCACAAATAC-G---CATT-TTTAAAG---GGGATCAAAGTGAAAAAATAATTTTTTTCAAT-GAAAACAA-TTTTTAAAAACTATTTTT-TATTTCATTTTTAATGTTTATTTTT----------------------ATGTATTTGCTCAAATAAAA-AT
droEug1 scf7180000408866:361-486 + AAAAAGGAAAAAGTCAGTTCGAGAAAAA--------ATAAAGATTTTAG----CATTAATGTGTATGAAATTG-----------------------------------------ATAAT----AAATTGT--GGGACCCACAA--TT---------------------------------------------------------------------------------------------------------------AAAACTCAAGAGATTCTACCAAACCACTTAAATATATTAG
droYak3 4:217528-217765 - AAAATCAAATTTTTTGCGTGGGA----T--------------------A----TCGCATTCGACATGTAATAGTTCAAAAGGGTTGAATCCAAAAAATAATTCAA-ATCGGTTCAGTATTTTAGAAGTTACACGTGTTCAAA--GTT-GAACCTTT-T---TTGGGTTGCAAAAATAGCAGG---TAT-TTTTTGTAGCAAATTTG-GAC-TTTGCGGTCGATTTTTAGGTAGAAT---AAATGTATAATATTCTTTGGAAGTTCAGGAATACCTACCTTAC---------------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAAATACGTTTTTTCATG---ATCGCGT--------TTGGCAAAAATGATATAT-GCAATCGGTAGGAAATACTTCAGAGATTATGAATCCGAAAAATTTTTGAA-ATCGGTTAAGATTCATGGGTGCTAGAGGCGCCCAAA--GTT-GAGACATT-TTTAGTG---AAAAGGGAAAAATGG---TAA-TTTTTAAAAAAAATCGCAA-CTTTATTAAGTTTTTTATTAATAGCATGTTTCATAAATTTTATT----------------------ATTTAATTACTTAAATAGGTATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................TAGAGGCGCCCAAA--GTT-GAGACATT-TT...........................................................................................................................................27200.9018000180
...........................................................................................................................................................T-TTTAGTG---AAAAGGGAAAAAT......................................................................................................................2150.20100010
......................TCGCGT--------TTGGCAAAAATGATATAT-GC.................................................................................................................................................................................................................................................26200.15302100
..........TTTTCATG---ATCGCGT--------TTGGCAAAAAT...........................................................................................................................................................................................................................................................26200.15303000
....TACGTTTTTTCATG---ATCGCGT--------TTGG..................................................................................................................................................................................................................................................................25200.10202000
.........TTTTTCATG---ATCGCGT--------TTGGCAAAAATGA.........................................................................................................................................................................................................................................................29200.10202000
.........TTTTTCATG---ATCGCGT--------TTGGCAAAAA............................................................................................................................................................................................................................................................26200.10202000
...................................................................................................................GATTCATGGGTGCTAGAGGC...................................................................................................................................................................20200.10200020
...........TTTCATG---ATCGCGT--------TTGGCAAAAA............................................................................................................................................................................................................................................................24200.10202000
............TTCATG---ATCGCGT--------TTGGCAAAAAT...........................................................................................................................................................................................................................................................24200.10202000
..............................................................................................................................................................................................................................TTTATTAATAGCATGTTTCATAAATTT.................................................27200.05100010
..............................................................................................................................................................................................................................TTTATTAATAGCATGTTTCAT.......................................................21200.05100010
..AATACGTTTTTTCATG---ATCGCGT--------T.....................................................................................................................................................................................................................................................................24200.05100010
..................................................................................................................AGATTCATGGGTGCTAGAGGG...................................................................................................................................................................21200.05101000
.........................CGT--------TTGGCAAAAATGATATAT-GCAAT..............................................................................................................................................................................................................................................26200.05101000
......................TCGCGT--------TTGGCAAAAATGATATAT-GCA................................................................................................................................................................................................................................................27200.05100010
.............TCATG---ATCGCGT--------TTGGCAAAAATGA.........................................................................................................................................................................................................................................................25200.05100010
......................TCGCGT--------TTGGCAAAAATGATATA.....................................................................................................................................................................................................................................................23200.05100010
.........TTTTTCATG---ATCGCGT--------TTGGCAAAAAT...........................................................................................................................................................................................................................................................27200.05101000
..........................................................................................................................................CAAA--GTT-GAGACATT-TTTAGTG---AAAA...............................................................................................................................26200.05100010
...........................................................................................................................................AAA--GTT-GAGACATT-TTTAGTG---AAA................................................................................................................................24200.05100010
...........TTTCATG---ATCGCGT--------TTGGCAAAAATGA.........................................................................................................................................................................................................................................................27200.05100010
..............................................................................AGATTATGAATCCGAAAAATT.......................................................................................................................................................................................................21200.05100010
............TTCATG---ATCGCGT--------TTGGCAAAAATGA.........................................................................................................................................................................................................................................................26200.05101000
.............................................................................................................................TGCTAGAGGCGCCCAAA--GTT-G.....................................................................................................................................................21200.05100010
...........TTTCATG---ATCGCGT--------TTGGCAAAAATG..........................................................................................................................................................................................................................................................26200.05110000
......................................................................TACTTCAGAGATTATGAATCCGAAAAAT........................................................................................................................................................................................................28200.05100010
....TACGTTTTTTCATG---ATCGCGT--------TT....................................................................................................................................................................................................................................................................23200.05100100
droVir3
TTTATTTAGTTATTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATTTATTTATTTATTTATTT----------------------ATTTATTTATTTATATATATATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AAAATCAAAAAAGGTACTTTAAGCGATT--------TTAAAAAAGTTGA----TGTCATATGAAAATAAATCGATCTACTGGTTTGTAGCCGAAAGATTTTTGAAAATCGGTCAATTTTTAGGGTAGTTATAGCCCTTCAAA--ATTTGGGAAAGTCG---CAAAGTTGTG--AAAAGCAGC---GAG-TTTTTGTGAAAAATATCCCAC-TTGTCAATTGAATTGTAGGAAAAATCTTGCACCAATTT------------------------------------------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........AGGTACTTTAAGCGATT--------TTAAAAAAGT............................................................................................................................................................................................................................................................2740.251100000
....................................................................AATCGATCTACTGGTTTGTAGCC...............................................................................................................................................................................................................2380.252100010
...........AGGTACTTTAAGCGATT--------TTAAAAAAGTTG..........................................................................................................................................................................................................................................................2940.251100000
................................................A----TGTCATATGAAAATAAATCGATCTA............................................................................................................................................................................................................................2670.141100000
........................................................................................................AAATCGGTCAATTTTTAGGGTAGTT.........................................................................................................................................................................2570.141100000
........................................................................................................AAATCGGTCAATTTTTAGGGTAGC..........................................................................................................................................................................2470.141000010
........................................................................................................AAATCGGTCAATTTTTAGGGTAG...........................................................................................................................................................................2370.141100000
............................................................................................AAAGATTTTTGAAAATCGGTCAATT.....................................................................................................................................................................................2570.141100000
...............................................................................................................................................................................................................CAC-TTGTCAATTGAATTGTAGGA...................................................................2380.131100000
..........................................................TATGAAAATAAATCGATCTACTGGTTT.....................................................................................................................................................................................................................2780.131100000
................................................A----TGTCATATGAAAATAAATCGATCC.............................................................................................................................................................................................................................2580.131000010
...............................................................................................................................................................................................................CAC-TTGTCAATTGAATTGTAGGAAAA................................................................2680.131100000
...........................................................ATGAAAATAAATCGATCTACTGG........................................................................................................................................................................................................................2380.131100000
................................................A----TGTCATATGAAAATAAATCGATC..............................................................................................................................................................................................................................2480.131100000
................................................A----TGTCATATGAAAATAAATCGATCT.............................................................................................................................................................................................................................2580.131100000
........................................................................................................................................TTCAAA--ATTTGGGAAAGTCG---CAAAGTT..................................................................................................................................2780.131100000
...............................................................................................................................................................................................................CAC-TTGTCAATTGAATTGTAGG....................................................................2280.131100000
...................................................................................................................................................................................................TGAAAAATATCCCAC-TTGTCAATTGAA...........................................................................2790.111100000
.............................................................................................................................................................................................................................AATTGTAGGAAAAATCTTGCACC......................................................2390.111000010
droPer2
ACA-------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTCAATG---AAAATGAGAGAAAGG---AGA-TTTTCACAATCAAACACAA------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................TT-TTCAATG---AAAATGAGAGAAAGG---AG...............................................................................................................2620.501010000
droKik1
AAAATCATATCTTTTGATCCAAA----TAAGGCAATCGAATAATTTAAA----CGGCATTGGACAGATAATTGTTGTAAAATGTATA--------------------TATGTACTGCAT----AAAGTAC--CACGCCCACAAATAC-G---CATT-TTTAAAG---GGGATCAAAGTGAAAAAATAATTTTTTTCAAT-GAAAACAA-TTTTTAAAAACTATTTTT-TATTTCATTTTTAATGTTTATTTTT----------------------ATGTATTTGCTCAAATAAAA-ATSizeHit CountTotal NormTotal
No Reads
droEug1
AAAAAGGAAAAAGTCAGTTCGAGAAAAA--------ATAAAGATTTTAG----CATTAATGTGTATGAAATTG-----------------------------------------ATAAT----AAATTGT--GGGACCCACAA--TT---------------------------------------------------------------------------------------------------------------AAAACTCAAGAGATTCTACCAAACCACTTAAATATATTAGSizeHit CountTotal NormTotal
No Reads
droYak3
AAAATCAAATTTTTTGCGTGGGA----T--------------------A----TCGCATTCGACATGTAATAGTTCAAAAGGGTTGAATCCAAAAAATAATTCAA-ATCGGTTCAGTATTTTAGAAGTTACACGTGTTCAAA--GTT-GAACCTTT-T---TTGGGTTGCAAAAATAGCAGG---TAT-TTTTTGTAGCAAATTTG-GAC-TTTGCGGTCGATTTTTAGGTAGAAT---AAATGTATAATATTCTTTGGAAGTTCAGGAATACCTACCTTAC---------------CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................TAGTTCAAAAGGGTTGAATCCAAA............................................................................................................................................................................................................24160.13202000000000
.......................................................................................................................................................................................................AAATTTG-GAC-TTTGCGGT...............................................................................18130.08101000000000
......................................................................TAGTTCAAAAGGGTTGAATCCAAAA...........................................................................................................................................................................................................25140.07101000000000
....................................................................................................................TATTTTAGAAGTTACACGTGTTCAAA--GT........................................................................................................................................................28150.07101000000000
......................................................................TAGTTCAAAAGGGTTGAATCCAA.............................................................................................................................................................................................................23160.06101000000000

Generated: 05/18/2015 at 07:34 AM