ID:

dwi_3582

 Coordinate:

scf2_1100000004947:633368-633518 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.1 -8.6 -8.6

Flybase annnotation

exon [dwil_GLEANR_8072:5]; CDS [Dwil\GK24056-cds]; intron [Dwil\GK24056-in]; Antisense to intron [Dwil\GK24068-in]

Repeatable elements

NameClassFamilyStrand
Transib3_DPDNATransib-
AT_richLow_complexityLow_complexity+
mature
  1. scf2_1100000008013:196-222 +
  2. scf2_1100000002972:179-205 -
  3. scf2_1100000013689:351-377 +
  4. scf2_1100000003683:977-1003 -
  5. scf2_1100000006266:1304-1330 +
  6. scf2_1100000004519:20610-20636 +
  7. scf2_1100000004389:1325-1351 -
  8. scf2_1100000004839:201164-201190 -
  9. scf2_1100000004947:589514-589540 +
  10. dwi_3582  scf2_1100000004947:633486-633512 -
  11. scf2_1100000004947:987013-987039 +
  12. scf2_1100000004936:569919-569945 +
  13. scf2_1100000004953:1086181-1086207 +
  14. scf2_1100000004953:1447411-1447437 -
  15. scf2_1100000004958:697864-697890 +
  16. scf2_1100000004963:96336-96362 +
  17. scf2_1100000004967:4107483-4107509 -
  18. scf2_1100000001101:5756-5782 +
  19. scf2_1100000001101:9114-9140 +
  20. scf2_1100000000108:12503-12529 +
  21. scf2_1100000004887:220542-220568 -
  22. scf2_1100000004889:54713-54739 -
  23. scf2_1100000004943:422408-422434 -
  24. scf2_1100000004943:429735-429761 -
  25. scf2_1100000004947:638897-638923 -
  26. scf2_1100000004913:156766-156792 -
  27. scf2_1100000004913:170716-170742 -
  28. scf2_1100000004953:850239-850265 -
  29. scf2_1100000004954:2761090-2761116 -
  30. scf2_1100000004967:719116-719142 -
star
  1. scf2_1100000008013:293-319 +
  2. scf2_1100000002134:1595-1621 +
  3. scf2_1100000002391:1102-1128 +
  4. scf2_1100000004167:1366-1392 +
  5. scf2_1100000004524:25080-25106 +
  6. scf2_1100000004830:597198-597224 +
  7. dwi_3582  scf2_1100000004947:633371-633397 -
  8. scf2_1100000004947:987103-987129 +
  9. scf2_1100000004909:992075-992101 +
  10. scf2_1100000004909:1164514-1164540 -
  11. scf2_1100000004918:36957-36983 +
  12. scf2_1100000004918:84056-84082 +
  13. scf2_1100000004937:66345-66371 +
  14. scf2_1100000004953:1086272-1086298 +
  15. scf2_1100000004954:2761000-2761026 -
  16. scf2_1100000004961:458674-458700 +
  17. scf2_1100000004961:2612001-2612027 +
  18. scf2_1100000004961:2617104-2617130 +
  19. scf2_1100000004968:2098559-2098585 +
  20. scf2_1100000000108:12593-12619 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACCGGGTTTCGATCCATTTTTAAAGGAAAAACATGCTTGGAAATATTTTCTGACTTTGACCTTGAATATTTCAGCACCACGAACACCCAGCACTTTTGACAAACATTCATTTTGAAGCTTAAGGTATTCTTTATCTATTATTTAATTTTTTATTATCTATTTCTATTATTTAAATTTTTGAAATCGCTTTATTGGTTCAGACGCTATGATTTTTGCAATGCTAAATGCCAGAAGGCCCCACTGTGCGACG
********************************************************..((((.((((.(((((((......(((.(((.(((.....(((.......))).......)))...))).)))........(((..((((..................))))..)))....)))))))...))))..))))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
..............................................................................................................................................................................................TATTGGTTCAGACGCTATGATTTT..................................... 24 0 20 1.00 20 10 10 0
................................................TTCTGACTTTGACCTTGAATATTTCAGC............................................................................................................................................................................... 28 0 20 0.45 9 7 0 2
......................................................................................................................................................................................................................TGCAATGCTAAATGCCAGAAGGCC............. 24 0 20 0.35 7 0 7 0
................................................TTCTGACTTTGACCTTGAATATTTC.................................................................................................................................................................................. 25 0 20 0.30 6 4 2 0
...................................................................................................................................................................................TGAAATCGCTTTATTGGTTCAGACG............................................... 25 0 20 0.15 3 3 0 0
..............................................................................................................................................................................................TATTGGTTCAGACGCTATGATTTTTGC.................................. 27 0 20 0.15 3 0 3 0
........................................................TTGACCTTGAATATTTCAGCACCACGA........................................................................................................................................................................ 27 0 20 0.15 3 1 2 0
........................................................TTGACCTTGAATATTTCAGCACCACG......................................................................................................................................................................... 26 0 20 0.15 3 2 1 0
...........................................................................................................................................................................................................................TGCTAAATGCCAGAAGGCCCCACTGT...... 26 0 20 0.15 3 3 0 0
...........................................................................................................................................................................TAAATTTTTGAAATCGCTTTATTGGTT..................................................... 27 0 20 0.15 3 0 3 0
................................................TTCTGACTTTGACCTTGAATATTTCAG................................................................................................................................................................................ 27 0 20 0.15 3 3 0 0
...............................................................................................................................................................................................................................AAATGCCAGAAGGCCCCACTGTGCG... 25 0 20 0.10 2 2 0 0
........................................................................................................................................................................................................................CAATGCTAAATGCCAGAAGGCC............. 22 0 20 0.10 2 0 2 0
.....................................................................................ACCCAGCACTTTTGACAAACATTCATTT.......................................................................................................................................... 28 0 20 0.10 2 2 0 0
....................................CTTGGAAATATATTCTGACGTTGACC............................................................................................................................................................................................. 26 2 20 0.10 2 0 0 2
..................................................................................................GACAAACATTCATTTTGAAGCTTAAGG.............................................................................................................................. 27 0 20 0.10 2 2 0 0
.....................................................................................................................................................................................................................TTGCAATGCTAAATGCCAGAAGGCC............. 25 0 20 0.10 2 1 1 0
............................................TATTTTCTGACTTTGACCTTGAATA...................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0
...............................................................TGAATATTTCAGCACCACGAACACCCAG................................................................................................................................................................ 28 0 20 0.10 2 2 0 0
.....................................................................................................................................................................................................................TTGCAATGCTAAATGCCAGAAGGCCC............ 26 0 20 0.10 2 2 0 0
................................................................................................................................................................................................TTGGTTCAGACGCTATGATTTTTGC.................................. 25 0 20 0.10 2 2 0 0
................................................................................................................................................................................TTTTGAAATCGCTTTATTGGTTCAGA................................................. 26 0 20 0.10 2 2 0 0
...................TTTAAAGGAAAAACATGCTTGGAAA............................................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0
............................................................................................................................................................................................TTTATTGGTTCAGACGCTATGATTTT..................................... 26 0 20 0.10 2 1 1 0
.................................................................................................................................................................................................TGGTTCAGACGCTATGATTTTTGC.................................. 24 0 20 0.10 2 0 2 0
........................................................................................................................................................................................TCGCTTTATTGGTTCAGACGCTATGA......................................... 26 0 20 0.10 2 1 1 0
.................................................................................................................................................................................................................................ATGCCAGAAGGCCCCACTGTGCGACG 26 0 15 0.07 1 1 0 0
..................................................................................................................................................................................TTGAAATCGCTTTATTGGTTCAGACG............................................... 26 0 20 0.05 1 0 1 0
............................................................CCTTGAATATTTCAGCACCAC.......................................................................................................................................................................... 21 0 20 0.05 1 0 1 0
...................................................................TATTTCAGCACCACGAACACCCAGCACT............................................................................................................................................................ 28 0 20 0.05 1 0 1 0
...................................................TGACTTTGACCTTGAATATTTCAGCAC............................................................................................................................................................................. 27 0 20 0.05 1 1 0 0
............................................................................................ACTTTTGACAAACATTCATTTTGAA...................................................................................................................................... 25 0 20 0.05 1 0 1 0
...............................................................................................................................................................................TTTTTGAAATCGCTTTATTGGTTCAGA................................................. 27 0 20 0.05 1 1 0 0
....................................................................................................CAAACATTCATTTTGAAGCTTAAGGTA............................................................................................................................ 27 0 20 0.05 1 1 0 0
..................................................................................................................................................................................................GGTTCAGACGCTATGATTTTTGC.................................. 23 0 20 0.05 1 1 0 0
........................................................TTGACCTTGAATATTTCAGCA.............................................................................................................................................................................. 21 0 20 0.05 1 1 0 0
..............................................................................................................................................................................................TATTGGTTCAGACGCTATGATTTTTGCAA................................ 29 0 20 0.05 1 1 0 0
.................................................................................................TGACAAACATTCATTTTGAAGCTTAAG............................................................................................................................... 27 0 20 0.05 1 1 0 0
................................................................................................................................................................................................TTGGTTCAGACGCTATGATTTTTGCA................................. 26 0 20 0.05 1 0 1 0
..............................................................................................................................................................................................TATTGGTTCAGACGCTATGATTT...................................... 23 0 20 0.05 1 1 0 0
..............................................................................................TTTTGACTAACATTCATTTTGAAGCT................................................................................................................................... 26 1 20 0.05 1 1 0 0
.........................................................TGACCTTGAATATTTCAGCACCACG......................................................................................................................................................................... 25 0 20 0.05 1 1 0 0
........................................................................................................................................................................................................................CAATGCTAAATGCCAGAAGGCCCCACTG....... 28 0 20 0.05 1 1 0 0
................................CATGCTTGGAAATATTTTCTGA..................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0
..................................................................................ACGCCCCAGCACTTTTGACAAACATTCAT............................................................................................................................................ 29 3 20 0.05 1 1 0 0
...........................................................................................................................................................................................................................TGCTAAATGCCAGAAGGCCCCACTGTGC.... 28 0 20 0.05 1 1 0 0
........................................................TTGACCTTGAAGATTTCAGCACCACG......................................................................................................................................................................... 26 1 20 0.05 1 1 0 0
..........................................................GACCTTGAATATTTCAGCACCACGAA....................................................................................................................................................................... 26 0 20 0.05 1 1 0 0
....................................CTTGGAAATATTTTCTGACTTTGACCT............................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0
.................................................TCTGACTTTGACCTTGAATATTTCAGCAC............................................................................................................................................................................. 29 0 20 0.05 1 1 0 0
......................................................................................................................................................................................................................TGCAATGCTAAATGCCAGAAGGC.............. 23 0 20 0.05 1 0 1 0
........................................................................................................................................................................................TCGCTTTATTGGTTCAGACGCTATG.......................................... 25 0 20 0.05 1 1 0 0
....................................................................................................................................................................................................TTCAGACGCTATGATTTTTGCAATGCT............................ 27 0 20 0.05 1 0 1 0
...........................................................................................................................................................................TAAATTTTTGAAATCGCTTTATTGGTTA.................................................... 28 1 20 0.05 1 0 1 0
...................................................................TATTTCAGCACCACGAACACCCAGCA.............................................................................................................................................................. 26 0 20 0.05 1 1 0 0
..............................................................................CACGAACACCCAGCACTTTTGACA..................................................................................................................................................... 24 0 20 0.05 1 1 0 0
.........................................................................................................................................................................................CGCTTTATTGGTTCAGACGCTATGAT........................................ 26 0 20 0.05 1 0 1 0
......................................................................................................................................................................................AATCGCTTTATTGGTTCAGACGCT............................................. 24 0 20 0.05 1 0 1 0
....................................................................................................................................................................................................TTCAGACGCTATGATTTTTGCAATGC............................. 26 0 20 0.05 1 1 0 0
.......................................................................................................................................................................................................AGACGCTATGATTTTTGCAATGCT............................ 24 0 20 0.05 1 1 0 0
...............................................................TGAATATTTCAGCACCACGAACACCCA................................................................................................................................................................. 27 0 20 0.05 1 1 0 0
...........................................................................CACCACGAACACCCAGCACTTTTGACAA.................................................................................................................................................... 28 0 20 0.05 1 1 0 0
........................................................TTGACCTTGAATATTTCAGCACCACGAAC...................................................................................................................................................................... 29 0 20 0.05 1 1 0 0
................................................TTCTGACTTTGACCTTGAATATTTCA................................................................................................................................................................................. 26 0 20 0.05 1 0 1 0
..............................................................TTGAATATTTCAGCACCACGA........................................................................................................................................................................ 21 0 20 0.05 1 0 1 0
...................................................................................................................................................................................................................TTTTGCAATGCTAAATGCCAGAAGGCC............. 27 0 20 0.05 1 1 0 0
........................................................................................................................................................................................................................CAATGCTAAATGCCAGAAGGCCCCA.......... 25 0 20 0.05 1 1 0 0
...........................................................................................................TCATTTTGAAGCTTAAGGTATTCTT....................................................................................................................... 25 0 20 0.05 1 1 0 0
...................................................................................................................................................................................TGAAATCGCTTTATTGGTTCAGACGC.............................................. 26 0 20 0.05 1 0 1 0
.............................................................TTTGAATATTTCAGCACCA........................................................................................................................................................................... 19 1 20 0.05 1 0 0 1
......................................................................................................................................................................................AATCGCTTTATTGGTTCAGACGCTA............................................ 25 0 20 0.05 1 0 1 0
...............................................................................................................................................................................................................TGATTTTTGCAATGCTAAATGCCAGTA................. 27 1 20 0.05 1 1 0 0
....................................................GACTTTGACCTTGAATATTTCAGCACCA........................................................................................................................................................................... 28 0 20 0.05 1 1 0 0
.........................................................TGACCTTGAATATTTCAGCACCACGA........................................................................................................................................................................ 26 0 20 0.05 1 0 1 0
................................................TTCTGACTTTGACCTTGAATATTTCAGCA.............................................................................................................................................................................. 29 0 20 0.05 1 0 0 1
....................................................GACTTTGACCTTGAATATTTCAGCA.............................................................................................................................................................................. 25 0 20 0.05 1 1 0 0
............................................TATTTTCTGACTTTGACCTTG.......................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0
..........................................................................................................................................................................................................CGCTATGATTTTTGCAATGCTAAA......................... 24 0 20 0.05 1 1 0 0
............................................................................................................CATTTTGAAGCTTAAGGTATTCTT....................................................................................................................... 24 0 20 0.05 1 0 1 0
....................................................................................................................................................................................GAAATCTCTTTATTGGTTCAGACGC.............................................. 25 1 20 0.05 1 0 1 0
...................................................................TATTTCAGCACCACGAACACCCAGCACTT........................................................................................................................................................... 29 0 20 0.05 1 1 0 0
............................................................................ACCACGAACACCCAGCACTTTTGACA..................................................................................................................................................... 26 0 20 0.05 1 0 1 0
..............................................................................................................................................................................................TATTGGTTCAGACGCTATGATTTTT.................................... 25 0 20 0.05 1 0 1 0
...................TTTAAAGGAAAAACATGCTTGGAAATA............................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0
.......................................................................................................................................................................................................................GCAATGCTAAATGCCAGAAGGCCCCA.......... 26 0 20 0.05 1 0 1 0
................................................................................................................................................................................TTTTGAAATCGCTTTATTGG....................................................... 20 0 20 0.05 1 0 1 0
...........................................................................................CACTTTTGACAAACATTCATTTTGAAGC.................................................................................................................................... 28 0 20 0.05 1 1 0 0
................................................................................CGAACACCCAGCACTTTTGACAAACATT............................................................................................................................................... 28 0 20 0.05 1 0 1 0
..............................................................................................................................................................................................TATTGGTTCAGACGCTATGATTTTTGCA................................. 28 0 20 0.05 1 1 0 0
.................................................................................................................................................................................TTTGAAATCGCTTTATTGGTTCAGACGC.............................................. 28 0 20 0.05 1 1 0 0
..................................................CTGACTTTGACCTTGAATATTTCAGCACC............................................................................................................................................................................ 29 0 20 0.05 1 1 0 0
.................................................................................................................................................................................................TGGTTCAGACGCTATGATTTTTGCA................................. 25 0 20 0.05 1 1 0 0
......................................................................................................................................................................................................CAGACGCTATGATTTTTGCAATGCTA........................... 26 0 20 0.05 1 1 0 0
................................................................GAATATTTCAGCACCACGAACACCC.................................................................................................................................................................. 25 0 20 0.05 1 1 0 0
................................................................................................................................................................................................................GATTTTTGCAAGGCTAAATGCCAGAAGG............... 28 1 20 0.05 1 1 0 0
..............................................................................................................................................................................................TATTGGGTCAGACGCTATGATTTTTGC.................................. 27 1 20 0.05 1 0 1 0
....................................................................................................CAAACATTCATTTTGAAGCTTAAGG.............................................................................................................................. 25 0 20 0.05 1 1 0 0
...........................................................ACCTTGAATATTTCAGCACCACGAAC...................................................................................................................................................................... 26 0 20 0.05 1 1 0 0
..............................................................TTGAATATTTCAGCACCACGAACACCCAG................................................................................................................................................................ 29 0 20 0.05 1 1 0 0

Anti-sense strand reads

TTGGCCCAAAGCTAGGTAAAAATTTCCTTTTTGTACGAACCTTTATAAAAGACTGAAACTGGAACTTATAAAGTCGTGGTGCTTGTGGGTCGTGAAAACTGTTTGTAAGTAAAACTTCGAATTCCATAAGAAATAGATAATAAATTAAAAAATAATAGATAAAGATAATAAATTTAAAAACTTTAGCGAAATAACCAAGTCTGCGATACTAAAAACGTTACGATTTACGGTCTTCCGGGGTGACACGCTGC
*****************************************************..((((.((((.(((((((......(((.(((.(((.....(((.......))).......)))...))).)))........(((..((((..................))))..)))....)))))))...))))..))))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body		 V119
head
..........................................................................................CGTGAAAACTGTTTGTAAGTAAAACT....................................................................................................................................... 26 0 20 2.35 47 47 0 0 0
..........................................................................................CGTGAAAACTGTTTGTAAGTAAAACTT...................................................................................................................................... 27 0 20 1.95 39 33 6 0 0
............................................................GGAACTTATAAAGTCGTGGTGCTTGT..................................................................................................................................................................... 26 0 20 1.70 34 28 6 0 0
.............................................................................GGTGCTTGTGGGTCGTGAAAACT....................................................................................................................................................... 23 0 20 0.60 12 8 4 0 0
..........................................TTATAAAAGACTGAAACTGGAACTTAT...................................................................................................................................................................................... 27 0 20 0.55 11 10 1 0 0
..GGCCCAAAGCTAGGTAAAAATTTCCTT.............................................................................................................................................................................................................................. 27 0 20 0.55 11 0 11 0 0
...........................................................................GTGGTGCTTGTGGGTCGTGAAAACT....................................................................................................................................................... 25 0 20 0.45 9 5 4 0 0
....................................................................................GTGGGTCGTGAAAACTGTTTGTAAG.............................................................................................................................................. 25 0 20 0.45 9 7 2 0 0
...................................................................ATAAAGTCGTGGTGCTTGTGGGTCGT.............................................................................................................................................................. 26 0 20 0.45 9 9 0 0 0
..........................................................................CGTGGTGCTTGTGGGTCGTGAAAAC........................................................................................................................................................ 25 0 20 0.40 8 3 4 1 0
..........................................................................................CGTGAAAACTGTTTGTAAGTAAAAC........................................................................................................................................ 25 0 20 0.40 8 8 0 0 0
....................................................................TAAAGTCGTGGTGCTTGTGGGTCGT.............................................................................................................................................................. 25 0 20 0.35 7 6 0 1 0
.............................................................................GGTGCTTGTGGGTCGTGAAAACTGTT.................................................................................................................................................... 26 0 20 0.30 6 2 4 0 0
................................................................................................................................................................................................AACCAAGTCTGCGATACTAAAAACGT................................. 26 0 20 0.30 6 1 5 0 0
...............................................................................................................................................................................................................ACTAAAAACGTTACGATTTACGGTCTT................. 27 0 20 0.30 6 0 6 0 0
......................................................GAAACTGGAACTTATAAAGTCGTGGT........................................................................................................................................................................... 26 0 20 0.30 6 6 0 0 0
..................................................................TATAAAGTCGTGGTGCTTGTGGGTCGT.............................................................................................................................................................. 27 0 20 0.30 6 5 0 1 0
...........................................TATAAAAGACTGAAACTGGAACTTAT...................................................................................................................................................................................... 26 0 20 0.25 5 5 0 0 0
......................................................................................................................................................................................................................ACGTTACGATTTACGGTCTTCCGGGGT.......... 27 0 20 0.25 5 0 5 0 0
.........................................................................................................................................................................................GCGAAATAACCAAGTCTGCGATACT......................................... 25 0 20 0.25 5 5 0 0 0
....................................................................................GTGGGTCGTGAAAACTGTTTGTAAGT............................................................................................................................................. 26 0 20 0.25 5 0 5 0 0
.................................................................................................................................................................................................ACCAAGTCTGCGATACTAAAAACGT................................. 25 0 20 0.20 4 0 4 0 0
..................................................................................................................................................................................................CCAAGTCTGCGATACTAAAAACGT................................. 24 0 20 0.20 4 1 3 0 0
..........................................................................................................AAGTAAAACTTCGAATTCCATAAGAAAT..................................................................................................................... 28 0 20 0.20 4 1 3 0 0
...........................................................TGGAACTTATAAAGTCGTGGTGCTTGT..................................................................................................................................................................... 27 0 20 0.20 4 4 0 0 0
...........................................................TGGAACTTATAAAGTCGTGGTGCT........................................................................................................................................................................ 24 0 20 0.15 3 2 1 0 0
.................................................AGACTGAAACTGGAACTTATAAAGTCGT.............................................................................................................................................................................. 28 0 20 0.15 3 0 3 0 0
.........................................................................................................................................................................................GCGAAATAACCAAGTCTGCGATACTAA....................................... 27 0 20 0.15 3 3 0 0 0
.............................................................................GGTGCTTGTGGGTCGTGAAAACTGT..................................................................................................................................................... 25 0 20 0.15 3 3 0 0 0
...............................................................ACTTATAAAGTCGTGGTGCTTGTGGGT................................................................................................................................................................. 27 0 20 0.15 3 3 0 0 0
.................................................................TTATAAAGTCGTGGTGCTTGTGGGT................................................................................................................................................................. 25 0 20 0.15 3 3 0 0 0
.........................................................................................................................................................................................GCGAAATAACCAAGTCTGCGATACTA........................................ 26 0 20 0.15 3 3 0 0 0
..........................................TTATAAAAGACTGAAACTGGAAC.......................................................................................................................................................................................... 23 0 20 0.15 3 0 3 0 0
...................................................................................TGTGGGTCGTGAAAACTGTTTGTAAGT............................................................................................................................................. 27 0 20 0.15 3 0 3 0 0
.............................................................GAACTTATAAAGTCGTGGTGCTTGT..................................................................................................................................................................... 25 0 20 0.15 3 3 0 0 0
...................AAATTTCCTTTTTGTACGAACCTTTAT............................................................................................................................................................................................................. 27 0 20 0.15 3 0 3 0 0
.........................................................ACTGGAACTTATAAAGTCGTGGTGCTT....................................................................................................................................................................... 27 0 20 0.15 3 2 1 0 0
...............................................................................TGCTTGTGGGTCGTGAAAACTGT..................................................................................................................................................... 23 0 20 0.10 2 0 2 0 0
......................TTTCCTTTTTGTACGAACCTTTAT............................................................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0
..........................................................CTGGAACTTATAAAGTCGTGGTGCT........................................................................................................................................................................ 25 0 20 0.10 2 2 0 0 0
......................................................................................................TTGTAAGTAAAACTTCGAATTCCAT............................................................................................................................ 25 0 20 0.10 2 2 0 0 0
............................................................GGAACTTATAAAGTCGTGGTGCTTG...................................................................................................................................................................... 25 0 20 0.10 2 1 1 0 0
..................................................................TATAAAGTCGTGGTGCTTGTGGGT................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0
.............................................................................GGTGCTTGTGGGTCGTGAAAACTG...................................................................................................................................................... 24 0 20 0.10 2 0 2 0 0
............................................................................TGGTGCTTGTGGGTCGTGAAAACT....................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0
.....................................................................................TGGGTCGTGAAAACTGTTTGTAAGT............................................................................................................................................. 25 0 20 0.10 2 0 2 0 0
...................................................................................................................................................................................................CAAGTCTGCGATACTAAAAACGT................................. 23 0 20 0.10 2 1 1 0 0
...........................................................TGGAACTTATAAAGTCGTGGTGCTT....................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0
..............................................AAAAGACTGAAACTGGAACTTATAAAGT................................................................................................................................................................................. 28 0 20 0.10 2 1 1 0 0
..................................................GACTGAAACTGGAACTTATAAAGTCGT.............................................................................................................................................................................. 27 0 20 0.10 2 2 0 0 0
..GGCCCAAAGCTAGGTAAAAATTTCCTTTT............................................................................................................................................................................................................................ 29 0 20 0.10 2 0 2 0 0
...............................TGTACGAACCTTTATAAAAGACTGAAAC................................................................................................................................................................................................ 28 0 20 0.10 2 0 2 0 0
..................................................................................................CTGTTTGTAAGTAAAACTTCGAATT................................................................................................................................ 25 0 20 0.10 2 0 2 0 0
...............................................................................................................................................................................................TAACCAAGTCTGCGATACTAAAAACGT................................. 27 0 20 0.10 2 0 2 0 0
......................................................................................................................................................................................TTAGCGAAATAACCAAGTCTGCGATACT......................................... 28 0 20 0.10 2 2 0 0 0
..............................................................................GTGCTTGTGGGTCGTGAAAACTGTT.................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0
.................................................................................................................................................................................................ACCAAGTCTGCGATACTAAAAACG.................................. 24 0 20 0.10 2 0 2 0 0
.......AAAGCTAGGTAAAAATTTCCTTTTTGT......................................................................................................................................................................................................................... 27 0 20 0.10 2 0 2 0 0
...........................................................................GTGGTGCTTGTGGGTCGTGAAAACTG...................................................................................................................................................... 26 0 20 0.10 2 1 1 0 0
.....................................................................AAAGTCGTGGTGCTTGTGGGTCGT.............................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0
..............................................................................................................................................................................TAAAAACTTTAGCGAAATAACCAAGT................................................... 26 0 20 0.10 2 0 2 0 0
.................................................................................................................................................................................................................TAAAAACGTTACGATTTACGGT.................... 22 0 20 0.10 2 0 2 0 0
.............................TTTGTACGAACCTTTATAAAAGACTGA................................................................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0
.................................................................................................................................................................................................................................TACGGTCTTCCGGGGTGACACGCTGC 26 0 15 0.07 1 1 0 0 0
................................................................................................................................................................................................................................TTACGGTCTTCCGGGGTGACACGCTG. 26 0 18 0.06 1 1 0 0 0
................................................................................................................................................................................................................................TTACGGTCTTCCGGGGTGACACGCT.. 25 0 18 0.06 1 0 1 0 0
.................................................AGACTGAAACTGGAACTTATAAAGT................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0
................................................................CTTATAAAGTCGTGGTGCTTGTGGGT................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
............................................................................................TGAAAACTGTTTGTAAGTAAAACTT...................................................................................................................................... 25 0 20 0.05 1 0 1 0 0
..................................................GACTGAAAATGGAACTTATAAAGTCGT.............................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0
...................................CGAACCTTTATAAAAGACTGAAACTG.............................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
..............................................................................GTACTTGTGGGTCGTGAAAACTGT..................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0
....................................................................................GTGGGTCGCGAAAACTGTTTGTAAGT............................................................................................................................................. 26 1 20 0.05 1 1 0 0 0
..............GGTAAAAATTTCCTTTTTGTACGAACCTT................................................................................................................................................................................................................ 29 0 20 0.05 1 0 1 0 0
....................................................................................GTGGGTCGTGAAAACTGTCTGTAAGT............................................................................................................................................. 26 1 20 0.05 1 1 0 0 0
..................................................................................TTGTGGGTCGTGAAAACTGTTTGT................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................................................GTCTGCGATACTAAAAACGTTACGA............................ 25 0 20 0.05 1 1 0 0 0
....................................................................AAAAGTCGTGGTGCTTGTGGGTCGT.............................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0
............................................................................................................GTAAAACTTCGAATTCCATAAGAAAT..................................................................................................................... 26 0 20 0.05 1 1 0 0 0
........................................................................................................................................................................................................CTGCGATACTAAAAACGTTA............................... 20 0 20 0.05 1 0 1 0 0
.....................................................................AAAGTCGTGGTGCTTGTGGGT................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................................ACTAAAAACGTTACGATTTACGGTCT.................. 26 0 20 0.05 1 0 1 0 0
............................................................................................................................................................................................AAATAACCAAGTCTGCGATACTAAAAA.................................... 27 0 20 0.05 1 0 1 0 0
..........................................................................................CGTGAAAACTGTTTCTAAGTAAAACTT...................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
.............................................................................GGTGCTTGTGGGCCGTGAAAAC........................................................................................................................................................ 22 1 20 0.05 1 1 0 0 0
.........................................................ACTGGAACCTATAAAGTCGTGGTGCTT....................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
............................................................GGAACTTATAAAGTCGTGGTGCTT....................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................................TTAGCGAAATAACCAAGTCTGCGATAC.......................................... 27 0 20 0.05 1 0 1 0 0
.......................................................................................................................................................................................................................CGTTACGATTTACGGTCTTCCGGGGTG......... 27 0 20 0.05 1 0 1 0 0
..................................ACGAACCTTTATAAAAGACTGAAACTG.............................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0
...........................................................................................GTGAAAACTGTTTGTAAGTAAAACT....................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
............................................................................TGGTGCTTGTGGATCGTGAAAACT....................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0
................................................................................................................................................................................................................CTAAAAACGTTACGATTTACGGTCTT................. 26 0 20 0.05 1 0 1 0 0
..........................................................................................................................................................................................CGAAATAACCAAGTCTGCGATACTA........................................ 25 0 20 0.05 1 1 0 0 0
......................................................................................GGGTCGTGAAAACTGTTTGTAAGTAA........................................................................................................................................... 26 0 20 0.05 1 0 1 0 0
.......................................................................................................................................................................................TAGCGAAATAACCAAGTCTGCGATACT......................................... 27 0 20 0.05 1 0 1 0 0
.............................................................................GGTGCTTGTGGGTCGTGAAAACTGTTT................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
..................AAAATTTCCTTTTTGTACGAACCTTTAT............................................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0
.................................................................................CTTGTGGGTCGTGAAAACTGTTT................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0
..........................................................................................AGTGAAGACTGTTTGTAAGTAAAACTT...................................................................................................................................... 27 2 20 0.05 1 1 0 0 0
.....................................................................................TGGGTCGTGAAAACTGTTT................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0
................TAAAAATTTCCTTTTTGTACGAACCT................................................................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0
...............................................................................TGCTTGTGGGTCGTGAAAACTGTT.................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0
................................................................................................................................................................................................AACCAAGTCTGCGATACTAAAAAC................................... 24 0 20 0.05 1 0 1 0 0
....................AATTTCCTTTTTGTACGAACCTTTAT............................................................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0
................................................................CTTATAAAGTCGTGGTGCTTGTGG................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
..........................................TTATAAAAGACTGAAACTGGAACTT........................................................................................................................................................................................ 25 0 20 0.05 1 0 1 0 0
.........................................................................................................................................................................................GCGAAATAACCAAGTCCGCGATACTAA....................................... 27 1 20 0.05 1 1 0 0 0
................................................................................................................................................................................................AACCAAGTCTGCGATACTAAAAACGC................................. 26 1 20 0.05 1 0 1 0 0
......................................................................AAGTCGTGGTGCTTGTGGGTCGT.............................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0
.............................................................................................................................................................................................................ATACTAAAAACGTTACGAT........................... 19 0 20 0.05 1 1 0 0 0
.....................................AACCTTTATAAAAGACTGAAAC................................................................................................................................................................................................ 22 0 20 0.05 1 0 1 0 0
.......................................................................................................................................................................................................TCTGCGATACTAAAAACGTTACGATTT......................... 27 0 20 0.05 1 1 0 0 0
........................................................................................................................................................................................................................GTTACGATTTACGGTCTTCCGGGGT.......... 25 0 20 0.05 1 0 1 0 0
...........................................................................................................................................................................................GAAATAACCAAGTCTGCGATACTAAAAA.................................... 28 0 20 0.05 1 0 1 0 0
...GCCCAAAGCTAGGTAAAAATTTCCT............................................................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0
................................................................................................................................................................................................................................TTGCGGTCTTCCGGGGTGACACGC... 24 1 20 0.05 1 1 0 0 0
............................................................................................................................................................................................................................CGATTTACGGTCTTCCGGGGTGACAC..... 26 0 20 0.05 1 1 0 0 0
..............................................................................TTGCTTGTGGGTCGTGAAAACTGTT.................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0
....CCCAAAGCTAGGTAAAAATTTCC................................................................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0
......................................................................................................TTGTAAGTAAAACTTCGAATTCCATAA.......................................................................................................................... 27 0 20 0.05 1 1 0 0 0
.................................................................................CTTGTGGGTCGTGATAACTGT..................................................................................................................................................... 21 1 20 0.05 1 0 0 0 1
................................................................................................................................................................................................................................TTACGGTCTTCCGGGGTGACACG.... 23 0 20 0.05 1 0 1 0 0
................................................................................................................................................................................................................................TTACGGACTTCCGGGGTGACA...... 21 1 20 0.05 1 1 0 0 0
..............GGTAAAAATTTCCTTTTTGTACGAACC.................................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
..............................................................................................................................................................................................ATAACCAAGTCTGCGATACTAAAAA.................................... 25 0 20 0.05 1 0 1 0 0
...............GTAAAAATTTCCTTTTTGTACGAACCT................................................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0
.........................................................................................AAATGAAAACTGTTTGTAAGTAAAAC........................................................................................................................................ 26 3 20 0.05 1 0 1 0 0
............................................................................TGGTGCTTGTGGGTCGTGAAAACTGT..................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
..........................................................................................CGTGAAAACTGCTTGTAAGTAAAACTT...................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
...................................................................................TGTGGGTCGTGAAAACTGTTT................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0
.......................................................................................................................................................................................................TCTGCGATACTAAAAACGTTACGATT.......................... 26 0 20 0.05 1 1 0 0 0
................................................................................................................................................................................................AACCAAGTCTGCGATACTAAAAACG.................................. 25 0 20 0.05 1 0 1 0 0
........................................................................................ATCGTGAAAACTGTTTGTAAGTA............................................................................................................................................ 23 1 20 0.05 1 1 0 0 0
..................................................GACTGAAACTGGAACTTATAAAGT................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0
.....................GTTTCCTTTTTGTACGAACCTTTATAA........................................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
......................................ACCTTTATAAAAGACTGAAACTGGAAC.......................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
..................................................................................GTGTGGGTCGTGAAAACTGTTTGTAAG.............................................................................................................................................. 27 1 20 0.05 1 0 0 1 0
.................................................................................................ACTGTTTGTAAGTAAAACTTCGAATT................................................................................................................................ 26 0 20 0.05 1 1 0 0 0
.............................................................................GGTGCTTGTGGGTCGTGAA........................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0
.......................................TCTTTATAAAAGACTGAAACTGGAACT......................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0
.....................................................TGAAACTGGAACTTATAAAGTCGT.............................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0
................................GTACGAACCTTTATAAAAGACTGAAACTG.............................................................................................................................................................................................. 29 0 20 0.05 1 0 1 0 0
...................................................................................TGTGGGTCGTGAAAACTCTTTGTAAGT............................................................................................................................................. 27 1 20 0.05 1 1 0 0 0
.....................................................................GAAGTCGTCGTGCTGGTGGGT................................................................................................................................................................. 21 3 20 0.05 1 0 0 1 0
......................................................................................GGGTCGTGAAAACTGTTTGTAAG.............................................................................................................................................. 23 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004947:633318-633568 - dwi_3582 AACCGG-----------------GTTTCGATCCATTTTTAAAGGAAAAACATGCT-TGGAAATATTTTCT-GAC--------TTTGAC-------------CTTGAATA-----------TTTCAGCACC------ACGAA-CACC------CAGCACTTTTGACAAACATTCATTT--------TGAAGCTTAAGGTATTCTTTATCTATTATTT------------------------------AATTTTTTA-------TTATCTATT-----TCTAT-----TATTTAAATTTTTGAAA---TCGCTTTATTGGTTCAGACGCTATGATTTTTGCAATGCTAAATGC--CAGAAGGCCCCACTGTGCGACG
droVir3 scaffold_12790:91871-91921 + TATCCT--------------------------T---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACT------------------------------AGCCTTTTA-------GCATATAAT-----TCTAT-----TGTACAATCTTTT-------------------------------------------------------------------------GAA
droMoj3 scaffold_6491:171939-172144 - AACATA--------------------------CATTT---TAGGACAAAAA--------TCACATTTTTC-A--------GGTTTGAG-------------GTAAAACT-----------GTGAAGCACCCTTTTAACGCATC---ACCCTG---TAT----------------TTTGGCCCATTTATAGCTTAAA-----------------------------------GAATTCTCTGTCGAA---TGCTTTTTAA------------ATTTTTG-------------------------AAATATCTTGCTTGGTTCAAAAGTTATGATTTTTGCAACGCAAAATGA--GCAAAGGCCCCACTGTGCGTCG
dp5 Unknown_singleton_1717:981-1205 - AAAAACAAAACAAAAAAAATAAAAA-TATTGCATTTTACATAGG-AAGATATGCACCGGCAACAAAGTTC-A--------AATTTAAC-------------CCATTATT-----------GTGAAGTTTTTAGACACTGTAGC---ATAATT---TAC----------------TTAAGCAGACTAAATTTCCAAA-----------------------------------GATTTGTCTTT-------------------------------CATGA-------------------------AGATATTTTTATTTGTTCAGAAGTAATTAATTTAGCAAGCTGAAACGG--CAAAATTCCCCACTGTGCGACG
droPer2 scaffold_52:355640-355863 + AGAAAA-----------------AA-TTGAGCATTTTACATAGG-AAAATATGCACCGGCAACAAAGTTC-A--------ACTTTAAC-------------CCATTATT-----------GTGAAGCTTATAAACACTGTAGC---ATAATT---TAC----------------TTAAACAGATTAAGTTTTGAAA-----------------------------------GATTTTTCTTTCAAA---TGCATTTCGT------------TTCATGA-------------------------AGATATCTTTATTTGTTCATAAGTTATTAATTTAGCAAGCTGAAACGG--CGGAATTCGCCACTGTGCGGCG
droAna3 scaffold_13260:120777-120793 - AG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCGC-GGATGATG
droBip1 scf7180000394852:28571-28634 - TCTATC--------------------------T---GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------GATATTTTC-------TGATTTGTG-----TATAT-----TATTTAATAATCTGAAG---CTTTTTT-------------------------------------------------------ATTGTTT
droKik1 scf7180000301629:9232-9445 + AATTGC--------------------------T---TTCATTGAAAAAA----------AAATATTTTTT-CAC--------TTTGAT-AT----CCTTAAAAAAGTATATAAAAGCGTATTTGTGGGCG------TGGTA-CATT------ATGCAGT-----------------------------------------------------ACATATATACATTTTACAACAATTACCTGTCCAA---TGCCGTTTAA------------ATTTTTC-------------------------GATTATCTTATTTGGTTCAAAAGATATGATTTTTGCAACGCTAAATGA--GAAAAGGCGCTACTGTGCGACG
droFic1 scf7180000453149:1331-1365 + TTTATT--------------------------T---ATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT------------------------------ATTTTTTTA-------TTA--TAGT---------------------------------------------------------------------------------------------------TCTAT
droEle1 scf7180000490225:1481-1519 - ATTATT--------------------------T---GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---AGCTTTTTAT------------ATATTTT-------------------------TATTATT------------------------------------------------------------TGTAT
droRho1 scf7180000777186:6875-6899 - CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGA--CAGGTGGCTCCACT-----ACG
droBia1 scf7180000300912:2694-2753 - GGATCA-----------------GTCCTATGCCCTTTGTAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAT-----------------------------------------------------------------------GTCATGTACGAC--GAGATCCTGC-GGATGACG
droTak1 scf7180000414305:10847-11061 + AGTTTT--------------------------T---TTTGTCGGAAAAAAATGGATTTGTTTTTAAATTCTGACTTTGCCGATTTG------------TAAGTACGCCT---------------------CTGCCACGCC------------CACTCCCTGTCTCAAGCAATAATTT--------GAAAGGTGGAT-----------------------------------CAATTATCTATCATT---TGCCGTTTAC------------AAAATTC-------------------------AATTATCTTCACTGGTTCAAAAGTTATGATTTAT-TACCAAAAAAAGT--CAAAAGGCGCCACTGTGCGACG
droEug1 scf7180000407783:10882-10943 + TTTTTT--------------------------A---TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT------------------------------AATTTTTTA-------TTAATAATT-----ATTATAAAAA-----------------AGTTATTTTTAATT---------------------------------------------------ATTTTGT
droYak3 v2_chr3R_random_170:308600-308840 + CATTAA------------------------AGCATTTTCAGAGAAAACAAATGAA----AAGTATTTCTC-GAA--------ATTGGATACAAATTGAGAAAACTGCCT---------------------C-------------------------------CAAAAACATTTATTT--------TCGAGTATAAAA--TCTACTATTTATCACAC---CATATTGTATGACC--ACTTAATCGAA---AGGTATTAAAGTATTAAAAAAAATTATGA-------------------------AAATATCTCAACTGGTTAAAGAGTTATGATTTTTGTAACCCAAAAGAA--TCAAAGGCGCCACTGTGCGACG
droEre2 scaffold_4710:71590-71616 + TGCCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAACCAAGGTGATCGGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AACCGG-----------------GTTTCGATCCATTTTTAAAGGAAAAACATGCT-TGGAAATATTTTCT-GAC--------TTTGAC-------------CTTGAATA-----------TTTCAGCACC------ACGAA-CACC------CAGCACTTTTGACAAACATTCATTT--------TGAAGCTTAAGGTATTCTTTATCTATTATTT------------------------------AATTTTTTA-------TTATCTATT-----TCTAT-----TATTTAAATTTTTGAAA---TCGCTTTATTGGTTCAGACGCTATGATTTTTGCAATGCTAAATGC--CAGAAGGCCCCACTGTGCGACGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................TATTGGTTCAGACGCTATGATTTT.......................................24201.00200100100
..................................................................TTCT-GAC--------TTTGAC-------------CTTGAATA-----------TTTCAGC........................................................................................................................................................................................................................................................28200.45927000
................................................................................................................................................................................................................................................................................................................................................TGCAATGCTAAATGC--CAGAAGGCC.............24200.35700070
..................................................................TTCT-GAC--------TTTGAC-------------CTTGAATA-----------TTTC...........................................................................................................................................................................................................................................................25200.30604020
..........................................................................................................................................................................................................................................................................................................TGAAA---TCGCTTTATTGGTTCAGACG.................................................25200.15303000
........................................................................................................................................................................................................................................................................................................................TATTGGTTCAGACGCTATGATTTTTGC....................................27200.15300030
...................................................................................TTGAC-------------CTTGAATA-----------TTTCAGCACC------ACGA...........................................................................................................................................................................................................................................27200.15301020
...................................................................................TTGAC-------------CTTGAATA-----------TTTCAGCACC------ACG............................................................................................................................................................................................................................................26200.15302010
.....................................................................................................................................................................................................................................................................................................................................................TGCTAAATGC--CAGAAGGCCCCACTGT......26200.15303000
..................................................................................................................................................................................................................................................................................................TAAATTTTTGAAA---TCGCTTTATTGGTT.......................................................27200.15300030
..................................................................TTCT-GAC--------TTTGAC-------------CTTGAATA-----------TTTCAG.........................................................................................................................................................................................................................................................27200.15303000
.........................................................................................................................................................................................................................................................................................................................................................AAATGC--CAGAAGGCCCCACTGTGCG...25200.10202000
..................................................................................................................................................................................................................................................................................................................................................CAATGCTAAATGC--CAGAAGGCC.............22200.10200020
...............................................................................................................................................ACC------CAGCACTTTTGACAAACATTCATTT--------..............................................................................................................................................................................................28200.10202000
..................................................................................................................................................................GACAAACATTCATTT--------TGAAGCTTAAGG..................................................................................................................................................................................27200.10202000
...............................................................................................................................................................................................................................................................................................................................................TTGCAATGCTAAATGC--CAGAAGGCC.............25200.10201010
..............................................................TATTTTCT-GAC--------TTTGAC-------------CTTGAATA-----------...............................................................................................................................................................................................................................................................25200.10202000
.......................................................................................................TGAATA-----------TTTCAGCACC------ACGAA-CACC------CAG............................................................................................................................................................................................................................28200.10202000
...............................................................................................................................................................................................................................................................................................................................................TTGCAATGCTAAATGC--CAGAAGGCCC............26200.10202000
..........................................................................................................................................................................................................................................................................................................................TTGGTTCAGACGCTATGATTTTTGC....................................25200.10202000
.......................................................................................................................................................................................................................................................................................................TTTTGAAA---TCGCTTTATTGGTTCAGA...................................................26200.10202000
....................................TTTAAAGGAAAAACATGCT-TGGAAA.........................................................................................................................................................................................................................................................................................................................25200.10200020
......................................................................................................................................................................................................................................................................................................................TTTATTGGTTCAGACGCTATGATTTT.......................................26200.10201010
...........................................................................................................................................................................................................................................................................................................................TGGTTCAGACGCTATGATTTTTGC....................................24200.10200020
..................................................................................................................................................................................................................................................................................................................TCGCTTTATTGGTTCAGACGCTATGA...........................................26200.10201010
...........................................................................................................................................................................................................................................................................................................................................................ATGC--CAGAAGGCCCCACTGTGCGACG26150.07101000
.........................................................................................................................................................................................................................................................................................................TTGAAA---TCGCTTTATTGGTTCAGACG.................................................26200.05100010
.......................................................................................C-------------CTTGAATA-----------TTTCAGCACC------AC.............................................................................................................................................................................................................................................21200.05100010
...........................................................................................................TA-----------TTTCAGCACC------ACGAA-CACC------CAGCACT........................................................................................................................................................................................................................28200.05100010
.....................................................................T-GAC--------TTTGAC-------------CTTGAATA-----------TTTCAGCAC......................................................................................................................................................................................................................................................27200.05101000
............................................................................................................................................................ACTTTTGACAAACATTCATTT--------TGAA..........................................................................................................................................................................................25200.05100010
......................................................................................................................................................................................................................................................................................................TTTTTGAAA---TCGCTTTATTGGTTCAGA...................................................27200.05101000
....................................................................................................................................................................CAAACATTCATTT--------TGAAGCTTAAGGTA................................................................................................................................................................................27200.05101000
............................................................................................................................................................................................................................................................................................................................GGTTCAGACGCTATGATTTTTGC....................................23200.05101000
...................................................................................TTGAC-------------CTTGAATA-----------TTTCAGCA.......................................................................................................................................................................................................................................................21200.05101000
........................................................................................................................................................................................................................................................................................................................TATTGGTTCAGACGCTATGATTTTTGCAA..................................29200.05101000
.................................................................................................................................................................TGACAAACATTCATTT--------TGAAGCTTAAG...................................................................................................................................................................................27200.05101000
..........................................................................................................................................................................................................................................................................................................................TTGGTTCAGACGCTATGATTTTTGCA...................................26200.05100010
........................................................................................................................................................................................................................................................................................................................TATTGGTTCAGACGCTATGATTT........................................23200.05101000
....................................................................................TGAC-------------CTTGAATA-----------TTTCAGCACC------ACG............................................................................................................................................................................................................................................25200.05101000
..................................................................................................................................................................................................................................................................................................................................................CAATGCTAAATGC--CAGAAGGCCCCACTG.......28200.05101000
.................................................CATGCT-TGGAAATATTTTCT-GA..............................................................................................................................................................................................................................................................................................................22200.05100010
.....................................................................................................................................................................................................................................................................................................................................................TGCTAAATGC--CAGAAGGCCCCACTGTGC....28200.05101000
.....................................................................................GAC-------------CTTGAATA-----------TTTCAGCACC------ACGAA-.........................................................................................................................................................................................................................................26200.05101000
.....................................................CT-TGGAAATATTTTCT-GAC--------TTTGAC-------------CT................................................................................................................................................................................................................................................................................27200.05101000
...................................................................TCT-GAC--------TTTGAC-------------CTTGAATA-----------TTTCAGCAC......................................................................................................................................................................................................................................................29200.05101000
................................................................................................................................................................................................................................................................................................................................................TGCAATGCTAAATGC--CAGAAGGC..............23200.05100010
..................................................................................................................................................................................................................................................................................................................TCGCTTTATTGGTTCAGACGCTATG............................................25200.05101000
..............................................................................................................................................................................................................................................................................................................................TTCAGACGCTATGATTTTTGCAATGCT..............................27200.05100010
..................................................................................................................................................................................................................................................................................................TAAATTTTTGAAA---TCGCTTTATTGGTTA......................................................28200.05100010
...........................................................................................................TA-----------TTTCAGCACC------ACGAA-CACC------CAGCA..........................................................................................................................................................................................................................26200.05101000
.................................................................................................................................C------ACGAA-CACC------CAGCACTTTTGACA.................................................................................................................................................................................................................24200.05101000
...................................................................................................................................................................................................................................................................................................................CGCTTTATTGGTTCAGACGCTATGAT..........................................26200.05100010
.............................................................................................................................................................................................................................................................................................................AA---TCGCTTTATTGGTTCAGACGCT...............................................24200.05100010
..............................................................................................................................................................................................................................................................................................................................TTCAGACGCTATGATTTTTGCAATGC...............................26200.05101000
.................................................................................................................................................................................................................................................................................................................................AGACGCTATGATTTTTGCAATGCT..............................24200.05101000
.......................................................................................................TGAATA-----------TTTCAGCACC------ACGAA-CACC------CA.............................................................................................................................................................................................................................27200.05101000
..............................................................................................................................CACC------ACGAA-CACC------CAGCACTTTTGACAA................................................................................................................................................................................................................28200.05101000
...................................................................................TTGAC-------------CTTGAATA-----------TTTCAGCACC------ACGAA-C........................................................................................................................................................................................................................................29200.05101000
..................................................................TTCT-GAC--------TTTGAC-------------CTTGAATA-----------TTTCA..........................................................................................................................................................................................................................................................26200.05100010
......................................................................................................TTGAATA-----------TTTCAGCACC------ACGA...........................................................................................................................................................................................................................................21200.05100010
.............................................................................................................................................................................................................................................................................................................................................TTTTGCAATGCTAAATGC--CAGAAGGCC.............27200.05101000
..................................................................................................................................................................................................................................................................................................................................................CAATGCTAAATGC--CAGAAGGCCCCA..........25200.05101000
...........................................................................................................................................................................TCATTT--------TGAAGCTTAAGGTATTCTT...........................................................................................................................................................................25200.05101000
..........................................................................................................................................................................................................................................................................................................TGAAA---TCGCTTTATTGGTTCAGACGC................................................26200.05100010
.............................................................................................................................................................................................................................................................................................................AA---TCGCTTTATTGGTTCAGACGCTA..............................................25200.05100010
.......................................................................GAC--------TTTGAC-------------CTTGAATA-----------TTTCAGCACC------A..............................................................................................................................................................................................................................................28200.05101000
....................................................................................TGAC-------------CTTGAATA-----------TTTCAGCACC------ACGA...........................................................................................................................................................................................................................................26200.05100010
..................................................................TTCT-GAC--------TTTGAC-------------CTTGAATA-----------TTTCAGCA.......................................................................................................................................................................................................................................................29200.05110000
.......................................................................GAC--------TTTGAC-------------CTTGAATA-----------TTTCAGCA.......................................................................................................................................................................................................................................................25200.05101000
..............................................................TATTTTCT-GAC--------TTTGAC-------------CTTG..............................................................................................................................................................................................................................................................................21200.05101000
....................................................................................................................................................................................................................................................................................................................................CGCTATGATTTTTGCAATGCTAAA...........................24200.05101000
............................................................................................................................................................................CATTT--------TGAAGCTTAAGGTATTCTT...........................................................................................................................................................................24200.05100010
...........................................................................................................TA-----------TTTCAGCACC------ACGAA-CACC------CAGCACTT.......................................................................................................................................................................................................................29200.05101000
...............................................................................................................................ACC------ACGAA-CACC------CAGCACTTTTGACA.................................................................................................................................................................................................................26200.05100010
........................................................................................................................................................................................................................................................................................................................TATTGGTTCAGACGCTATGATTTTT......................................25200.05100010
....................................TTTAAAGGAAAAACATGCT-TGGAAATA.......................................................................................................................................................................................................................................................................................................................27200.05101000
.................................................................................................................................................................................................................................................................................................................................................GCAATGCTAAATGC--CAGAAGGCCCCA..........26200.05100010
.......................................................................................................................................................................................................................................................................................................TTTTGAAA---TCGCTTTATTGG.........................................................20200.05100010
...........................................................................................................................................................CACTTTTGACAAACATTCATTT--------TGAAGC........................................................................................................................................................................................28200.05101000
.........................................................................................................................................CGAA-CACC------CAGCACTTTTGACAAACATT...........................................................................................................................................................................................................28200.05100010
........................................................................................................................................................................................................................................................................................................................TATTGGTTCAGACGCTATGATTTTTGCA...................................28200.05101000
........................................................................................................................................................................................................................................................................................................TTTGAAA---TCGCTTTATTGGTTCAGACGC................................................28200.05101000
....................................................................CT-GAC--------TTTGAC-------------CTTGAATA-----------TTTCAGCACC------...............................................................................................................................................................................................................................................29200.05101000
...........................................................................................................................................................................................................................................................................................................................TGGTTCAGACGCTATGATTTTTGCA...................................25200.05101000
................................................................................................................................................................................................................................................................................................................................CAGACGCTATGATTTTTGCAATGCTA.............................26200.05101000
........................................................................................................GAATA-----------TTTCAGCACC------ACGAA-CACC------C..............................................................................................................................................................................................................................25200.05101000
....................................................................................................................................................................CAAACATTCATTT--------TGAAGCTTAAGG..................................................................................................................................................................................25200.05101000
......................................................................................AC-------------CTTGAATA-----------TTTCAGCACC------ACGAA-C........................................................................................................................................................................................................................................26200.05101000
......................................................................................................TTGAATA-----------TTTCAGCACC------ACGAA-CACC------CAG............................................................................................................................................................................................................................29200.05101000
droVir3
TATCCT--------------------------T---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACT------------------------------AGCCTTTTA-------GCATATAAT-----TCTAT-----TGTACAATCTTTT-------------------------------------------------------------------------GAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................TTA-------GCATATAAT-----TCTAT-----TGTACAATC................................................................................26200.204003000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TA-------GCATATAAT-----TCTAT-----TGTACA...................................................................................22200.153001000000000000000000000000200000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTA-------GCATATAAT-----TCTAT-----TG.......................................................................................19200.153002000000000000000000000000000001000000000000000000000000000000
.............................................................................................................................................................................................................................................................TA-------GCATATAAT-----TCTAT-----TGTACAATCT...............................................................................26200.102000000000000000000000000000000000002000000000000000000000000000
.............................................................................................................................................................................................................................................................TA-------GCATATAAT-----TCTAT-----TGTACAATC................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GCATATAAT-----TCTAT-----TGTACAATCTTTT-------------------------------------------------------------------------...27200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TA-------GCATATAAT-----TCTAT-----TGTA.....................................................................................20200.051000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTA-------GCATATAAT-----TCTAT-----T........................................................................................18200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TA-------GCATATAAT-----TCTAT-----TGTACCC..................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TA-------GCATATAAT-----TCTAT-----TGTACAATCTTT.............................................................................28200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
AACATA--------------------------CATTT---TAGGACAAAAA--------TCACATTTTTC-A--------GGTTTGAG-------------GTAAAACT-----------GTGAAGCACCCTTTTAACGCATC---ACCCTG---TAT----------------TTTGGCCCATTTATAGCTTAAA-----------------------------------GAATTCTCTGTCGAA---TGCTTTTTAA------------ATTTTTG-------------------------AAATATCTTGCTTGGTTCAAAAGTTATGATTTTTGCAACGCAAAATGA--GCAAAGGCCCCACTGTGCGTCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................TC---ACCCTG---TAT----------------TTTGGCCCATTTATA..........................................................................................................................................................................................2611.001100000
........................................................................................................AAACT-----------GTGAAGCACCCTTTTAACGCA..........................................................................................................................................................................................................................................2621.002200000
.......................................................................................................AAAACT-----------GTGAAGCACCCTTTTA...............................................................................................................................................................................................................................................2220.501100000
.......................................................................................................AAAACT-----------GTGAAGCACCCTTTTAACG............................................................................................................................................................................................................................................2520.501100000
...................................TT---TAGGACAAAAA--------TCACATTTTTC-A--------GGT....................................................................................................................................................................................................................................................................................................2850.402200000
...................................TT---TAGGACAAAAA--------TCACATTTTT..................................................................................................................................................................................................................................................................................................................2360.332200000
..........................................................................................................................................................................................................................................................................................................................................................AATGA--GCAAAGGCCCCACTGTGCGT..2540.251100000
....................................T---TAGGACAAAAA--------TCACATTTTTC-A--------GG.....................................................................................................................................................................................................................................................................................................2650.201100000
........................................TAGGACAAAAA--------TCACATTTTTC-A--------GG.....................................................................................................................................................................................................................................................................................................2550.201100000
..................................................................................................................................................................................................................................................................................................................................AAAGTTATGATTTTTGCAACGCAAAATG.........................2860.171100000
.................................................................................................................................................................................................................................................................AA------------ATTTTTG-------------------------AAATATCTTGCTTGGT........................................................2560.171100000
..................................................................................TTTGAG-------------GTAAAACT-----------GTGAAGCACC.....................................................................................................................................................................................................................................................2460.171100000
..................................................................................................................................................................................................................................................................................................................................AAAGTTATGATTTTTGCAACGCAA.............................2470.141100000
...................................................................................................................................................................................................................................................................................................................................AAGTTATGATTTTTGCAACGCAAAAT..........................2670.141100000
.....................................................................................GAG-------------GTAAAACT-----------GTGAAGCACCC....................................................................................................................................................................................................................................................2270.141000010
.....................................................................................................................................TTAACGCATC---ACCCTG---TAT----------------TTTGGCC..................................................................................................................................................................................................2670.141000010
.....................................................................................................GTAAAACT-----------GTGAAGCACCC....................................................................................................................................................................................................................................................1970.141100000
..................................................................................................................................................................................................................................................................A------------ATTTTTG-------------------------AAATATCTTGCTTGG.........................................................2370.141100000
..................................................................................................................................................................................................................................................................................................................................AAAGTTATGATTTTTGCAACGCAAAA...........................2670.141100000
...............................................................................................................................................................................................................................................................................ATTTTTG-------------------------AAATATCTTGCTTGG.........................................................2270.141100000
....................................................................................................................................................................................................................................................................................................................................................ACGCAAAATGA--GCAAAGGCC.............2080.131000010
............................................................................................................................................................................................................................................CTCTGTCGAA---TGCTTTTTAA------------ATTT....................................................................................................24100.101100000
............................................................................................................................................................................................................................................CTCTGTCGAA---TGCTTTTTAA------------ATT.....................................................................................................23100.101100000
........................................................................................................................................................................................................................................................................................................................................................AAAATGA--GCAAAGGCCCCACTT.......22100.101000010
dp5
AAAAACAAAACAAAAAAAATAAAAA-TATTGCATTTTACATAGG-AAGATATGCACCGGCAACAAAGTTC-A--------AATTTAAC-------------CCATTATT-----------GTGAAGTTTTTAGACACTGTAGC---ATAATT---TAC----------------TTAAGCAGACTAAATTTCCAAA-----------------------------------GATTTGTCTTT-------------------------------CATGA-------------------------AGATATTTTTATTTGTTCAGAAGTAATTAATTTAGCAAGCTGAAACGG--CAAAATTCCCCACTGTGCGACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................TAATTTAGCAAGCTGAAACGG--CAAAAT................2731.3340000000400
............................................................................................................T-----------GTGAAGTTTTTAGACACTGTAGC---A....................................................................................................................................................................................................................................2521.0020000000110
................................................................................................................................TTTAGACACTGTAGC---ATAATT---TAC----------------T........................................................................................................................................................................................................2530.6720000000020
........................................................................................................TTATT-----------GTGAAGTTTTTAGACACTG............................................................................................................................................................................................................................................2420.5010100000000
.............................................................................................................................GTTTTTAGACACTGTAGC---ATA..................................................................................................................................................................................................................................2120.5010000000100
....................................................................................TAAC-------------CCATTATT-----------GTGAAGTTTTTAGA.................................................................................................................................................................................................................................................2620.5010000000010
...........................................................................................................TT-----------GTGAAGTTTTTAGACACTGTAGC---A....................................................................................................................................................................................................................................2620.5010000000010
..........................................................................................................................................................................................................................................................................................................................................TAATTTAGCAAGCTGAAACGG--......................21170.4170600000100
..........................................................................................................................................................................................................................................................................................................................................TAATTTAGCAAGCTGAAACGG--C.....................22170.3560510000000
...........................................................................................................................................................................................................................................................................................................................................AATTTAGCAAGCTGAAACGG--CAA...................2330.3310100000000
..........................................................................................................................................................................................................................................................................................................................................TAATTTAGCAAGCTGAAACGG--CAAAA.................2630.3310000000010
......................................................................................................................................CACTGTAGC---ATAATT---TAC----------------TTAAGCA..................................................................................................................................................................................................2530.3310100000000
..................................................................................................................................TAGACACTGTAGC---ATAATT---TAC----------------TTAAG....................................................................................................................................................................................................2730.3310000000010
...................................................................................................................................................................................................................................................................................................................................................AAGCTGAAACGG--CAAAATTCCCCACTG.......2730.3310100000000
..........................................................................................................................................................................................................................................................................................................................................TAATTTAGCAAGCTGAAACGG--CAAATAA...............2830.3310000000100
.......................................................................................................................................................................................................................................................................................................................................................TGAAACGG--CAAAATTCCCCACTGTGC....2630.3310100000000
.........................................................................................................................................................................................................................................................................................................................................TTAATTTAGCAAGCTGAAACGG--......................22160.0610000000010
droPer2
AGAAAA-----------------AA-TTGAGCATTTTACATAGG-AAAATATGCACCGGCAACAAAGTTC-A--------ACTTTAAC-------------CCATTATT-----------GTGAAGCTTATAAACACTGTAGC---ATAATT---TAC----------------TTAAACAGATTAAGTTTTGAAA-----------------------------------GATTTTTCTTTCAAA---TGCATTTCGT------------TTCATGA-------------------------AGATATCTTTATTTGTTCATAAGTTATTAATTTAGCAAGCTGAAACGG--CGGAATTCGCCACTGTGCGGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................GGCAACAAAGTTC-A--------ACTTTAAC-------------CCA...............................................................................................................................................................................................................................................................................2590.111010000
..........................................................................................................................................................................................................................................................................................................................................TAATTTAGCAAGCTGAAACGG--CGG...................24160.061010000
droAna3
AG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCCGC-GGATGATGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TCTATC--------------------------T---GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------------------GATATTTTC-------TGATTTGTG-----TATAT-----TATTTAATAATCTGAAG---CTTTTTT-------------------------------------------------------ATTGTTTSizeHit CountTotal NormTotal
No Reads
droKik1
AATTGC--------------------------T---TTCATTGAAAAAA----------AAATATTTTTT-CAC--------TTTGAT-AT----CCTTAAAAAAGTATATAAAAGCGTATTTGTGGGCG------TGGTA-CATT------ATGCAGT-----------------------------------------------------ACATATATACATTTTACAACAATTACCTGTCCAA---TGCCGTTTAA------------ATTTTTC-------------------------GATTATCTTATTTGGTTCAAAAGATATGATTTTTGCAACGCTAAATGA--GAAAAGGCGCTACTGTGCGACGSizeHit CountTotal NormTotal
No Reads
droFic1
TTTATT--------------------------T---ATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT------------------------------ATTTTTTTA-------TTA--TAGT---------------------------------------------------------------------------------------------------TCTATSizeHit CountTotal NormTotal
No Reads
droEle1
ATTATT--------------------------T---GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---AGCTTTTTAT------------ATATTTT-------------------------TATTATT------------------------------------------------------------TGTATSizeHit CountTotal NormTotal
No Reads
droRho1
CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGA--CAGGTGGCTCCACT-----ACGSizeHit CountTotal NormTotal
No Reads
droBia1
GGATCA-----------------GTCCTATGCCCTTTGTAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAT-----------------------------------------------------------------------GTCATGTACGAC--GAGATCCTGC-GGATGACGSizeHit CountTotal NormTotal
No Reads
droTak1
AGTTTT--------------------------T---TTTGTCGGAAAAAAATGGATTTGTTTTTAAATTCTGACTTTGCCGATTTG------------TAAGTACGCCT---------------------CTGCCACGCC------------CACTCCCTGTCTCAAGCAATAATTT--------GAAAGGTGGAT-----------------------------------CAATTATCTATCATT---TGCCGTTTAC------------AAAATTC-------------------------AATTATCTTCACTGGTTCAAAAGTTATGATTTAT-TACCAAAAAAAGT--CAAAAGGCGCCACTGTGCGACGSizeHit CountTotal NormTotal
No Reads
droEug1
TTTTTT--------------------------A---TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTT------------------------------AATTTTTTA-------TTAATAATT-----ATTATAAAAA-----------------AGTTATTTTTAATT---------------------------------------------------ATTTTGTSizeHit CountTotal NormTotal
No Reads
droYak3
CATTAA------------------------AGCATTTTCAGAGAAAACAAATGAA----AAGTATTTCTC-GAA--------ATTGGATACAAATTGAGAAAACTGCCT---------------------C-------------------------------CAAAAACATTTATTT--------TCGAGTATAAAA--TCTACTATTTATCACAC---CATATTGTATGACC--ACTTAATCGAA---AGGTATTAAAGTATTAAAAAAAATTATGA-------------------------AAATATCTCAACTGGTTAAAGAGTTATGATTTTTGTAACCCAAAAGAA--TCAAAGGCGCCACTGTGCGACGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................TACAAATTGAGAAAACTGCCT---------------------C-------------------------------CAAA.................................................................................................................................................................................................................26170.29505000000000
.......................................................................................................................................................................................................................C---CATATTGTATGACC--ACTTAATC....................................................................................................................................23200.10202000000000
........................................................................................TACAAATTGAGAAAACTGCCT---------------------C-------------------------------CAAAA................................................................................................................................................................................................................27170.06101000000000
........................................................................................TACAAATTGAGAAAACTGCCT---------------------C-------------------------------CAA..................................................................................................................................................................................................................25170.06101000000000
........................................................................................TACAAATTGAGAAAACTGCCT---------------------C-------------------------------C....................................................................................................................................................................................................................23180.06100100000000
........................................................................................TACAAATTGAGAAAACTGCCT---------------------C-------------------------------CA...................................................................................................................................................................................................................24180.06101000000000
.......................................................................................................................................................................................................................C---CATATTGTATGACC--ACTTAATCGAA---..............................................................................................................................26190.05101000000000
....................................................................................TGGATACAAATTGAGAAAACTGCCC---------------------.....................................................................................................................................................................................................................................................25200.05100100000000
...........................................................................................................................................................................................................CTATTTATCACAC---CATATTGTA...................................................................................................................................................22200.05101000000000
.......................................................................................................................................................................................................................C---CATATTGTATGACC--ACTTAATCGAA---AT............................................................................................................................28200.05101000000000
.............................................................................................ATTGAGAAAACTGCCT---------------------C-------------------------------CAAAA................................................................................................................................................................................................................22200.05101000000000
....................................................................................TGGATACAAATTGAGAAAACTGCC...........................................................................................................................................................................................................................................................................24200.05100100000000
droEre2
TGCCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAACCAAGGTGATCGGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
TGCCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGAACCAAGGTGATCGG..25200.0511000000

Generated: 05/18/2015 at 07:34 AM