ID:

dwi_3571

 Coordinate:

scf2_1100000004945:891876-892120 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-44.2 -44.2 -44.2

Flybase annnotation

exon [dwil_GLEANR_18730:4]; CDS [Dwil\GK18347-cds]; exon [dwil_GLEANR_18730:3]; CDS [Dwil\GK18347-cds]; intron [Dwil\GK18347-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######--------------------------------------------
TAAGGAAAAAGAATGCCAACTCAAACGATTGGACATGGAGCACATCAAATGTAAGCAGCCCAGACCCCGAAACTTATACCATTAATACATATCTTACTTCATAATACGAAAGTTCTGTTTGTAATATAGATAATAATGATATATTTTTCATGTTTTCAATATTTTTAATTGCAAACTAAACGCGAATTTTTTAAATAATTACCAAATTTTTTGATGAATTCGCTTGGTTGCGACGAGCCGAACTGAAGAATAAGTATGGGGAAATATGTGTAAAAGTAATTTTTAAAAAATAAAGAATTAAATTTGTAACGGATACACTACATTTGCAGGCTATTAATACTAATT
**************************************************...................................(((((((.((.(((((((.......(((((.(((((.(((((.((.((((.(((........))))))).)).))))).....((((((.((((..((((((((.(((((.((((....)))).))))).))))))))))))))))))))))).)))))..........))))))).)).))))))).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
.................................................................................................................................................................................................................TTTGATGAATTCGCTTGG...................................................................................................................... 18 0 1 1.00 1 1

Anti-sense strand reads

ATTCCTTTTTCTTACGGTTGAGTTTGCTAACCTGTACCTCGTGTAGTTTACATTCGTCGGGTCTGGGGCTTTGAATATGGTAATTATGTATAGAATGAAGTATTATGCTTTCAAGACAAACATTATATCTATTATTACTATATAAAAAGTACAAAAGTTATAAAAATTAACGTTTGATTTGCGCTTAAAAAATTTATTAATGGTTTAAAAAACTACTTAAGCGAACCAACGCTGCTCGGCTTGACTTCTTATTCATACCCCTTTATACACATTTTCATTAAAAATTTTTTATTTCTTAATTTAAACATTGCCTATGTGATGTAAACGTCCGATAATTATGATTAA
**************************************************...................................(((((((.((.(((((((.......(((((.(((((.(((((.((.((((.(((........))))))).)).))))).....((((((.((((..((((((((.(((((.((((....)))).))))).))))))))))))))))))))))).)))))..........))))))).)).))))))).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body
..............................................................................................................................................................................................................................GGTCCTACGCTGCTCGGCT........................................................................................................ 19 3 8 1.38 11 9 2
....................................................GTCGCCGGGTCTGGGTCTT.................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004945:891826-892170 - dwi_3571 TAAGGAAAAAGAATGCCAACTCAAACGATTGGACATGGAGCACATCAAATGTAAGCAGCCCAGACCCCGAAACTTATACCATTAATACATATCTTACTTCATAATACGAAAGTTCTGTTTGTAATATAGATAATAATGATATATTTTTCATGTTTTCAATATTTTTAATTGCAAACTAAACGCGAATTTTTTAAATAATTACCAAATTTTTTGATGAATTCGCTTGGTTGCGACGAGCCGAACTGAAGAATAAGTATGGGGAAATATGTGTAAAAGTAATTTTTAAAAAATAAAGAATTAAATTTGTAACGGATACACTACATTTGCAGGCTATTAATACTAATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TAAGGAAAAAGAATGCCAACTCAAACGATTGGACATGGAGCACATCAAATGTAAGCAGCCCAGACCCCGAAACTTATACCATTAATACATATCTTACTTCATAATACGAAAGTTCTGTTTGTAATATAGATAATAATGATATATTTTTCATGTTTTCAATATTTTTAATTGCAAACTAAACGCGAATTTTTTAAATAATTACCAAATTTTTTGATGAATTCGCTTGGTTGCGACGAGCCGAACTGAAGAATAAGTATGGGGAAATATGTGTAAAAGTAATTTTTAAAAAATAAAGAATTAAATTTGTAACGGATACACTACATTTGCAGGCTATTAATACTAATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................TTTGATGAATTCGCTTGG......................................................................................................................1811.00100010

Generated: 05/18/2015 at 07:26 AM