ID:

dwi_3560

 Coordinate:

scf2_1100000004945:379174-379324 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.4 -22.4 -22.0

Flybase annnotation

exon [dwil_GLEANR_18804:1]; CDS [Dwil\GK18429-cds]; intron [Dwil\GK18429-in]

No Repeatable elements found

mature
  1. scf2_1100000006560:593-616 +
  2. scf2_1100000004515:1741859-1741882 +
  3. scf2_1100000004558:1843902-1843925 +
  4. scf2_1100000004564:110577-110600 +
  5. scf2_1100000004585:8660977-8661000 +
  6. scf2_1100000004851:146962-146985 +
  7. scf2_1100000004854:85823-85846 +
  8. dwi_5155  scf2_1100000004943:7190981-7191004 +
  9. scf2_1100000004943:10990243-10990266 +
  10. dwi_3560  scf2_1100000004945:379243-379266 +
  11. scf2_1100000004936:432176-432199 -
  12. scf2_1100000004952:688019-688042 +
  13. scf2_1100000004954:1279120-1279143 +
  14. scf2_1100000004954:3513761-3513784 +
  15. scf2_1100000004954:4154795-4154818 +
  16. scf2_1100000004962:301436-301459 +
  17. scf2_1100000004968:3001731-3001754 +
  18. scf2_1100000012634:984-1007 +
  19. dwi_4333  scf2_1100000000500:4046-4069 +
  20. scf2_1100000000674:3217-3240 +
  21. scf2_1100000004945:709852-709875 -
star
  1. scf2_1100000006095:973-1000 -
  2. scf2_1100000003810:10314-10341 +
  3. scf2_1100000006560:558-585 +
  4. scf2_1100000004515:1741824-1741851 +
  5. scf2_1100000004564:110542-110569 +
  6. scf2_1100000004721:240978-241005 +
  7. scf2_1100000004943:10990208-10990235 +
  8. scf2_1100000004943:16427998-16428025 -
  9. dwi_3560  scf2_1100000004945:379208-379235 +
  10. scf2_1100000004945:709883-709910 -
  11. scf2_1100000004909:811642-811669 -
  12. scf2_1100000004909:1025939-1025966 +
  13. scf2_1100000004936:432207-432234 -
  14. scf2_1100000004936:629857-629884 +
  15. scf2_1100000004954:3513726-3513753 +
  16. scf2_1100000004961:1766659-1766686 -
  17. scf2_1100000004961:2688569-2688596 +
  18. scf2_1100000004961:4149998-4150025 +
  19. scf2_1100000000585:1977-2004 -
  20. scf2_1100000000674:3182-3209 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGTGCCCAGAAGGGCATAAGCATACGTTGGCGATCCCCACATTTTTGTCGTAAGTAACATGGGAAAACTCTATTTAGAAGGCATAGCGACATATCTCCGACGACATATCTCCGCCCAGTACATTTTTCTGGCGGAGATATGTCGCATTTTTAACGGCGGAGATATGTCGTTGTAAAACGACATATCATCGCCGGTGATCTGTGCGGAGATATGTCGTTTCAAAACGTCATATGTATCTCCGCCGTTAGAA
************************************************************************************...................(((((((((((((.((.........)))))))))))))))************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M020
head
 M045
female body
 V118
embryo
 V117
male body		 V119
head
........AGAAGGGCTTAAGCTTACGTC.............................................................................................................................................................................................................................. 21 3 1 4.00 4 4 0 0 0 0
..........AAGGGCATAAGCATACGTTGGCG.......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0
.......................................................................................................................TACATTTTTCTGGCGGAGATATGT............................................................................................................ 24 0 20 0.75 15 0 13 2 0 0
......CAAGAAGGGCTTAAGCTTACGT............................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 1 0
....................................................................................TAGCGACATATCTCCGACGACATATCTC........................................................................................................................................... 28 0 20 0.30 6 0 6 0 0 0
......................................................................................................................................................................................................TCTGTGCGGAGATATGTCGTTTCAAAAA......................... 28 1 4 0.25 1 0 1 0 0 0
..........................................................................................................................................................................................................TGCGGAGATATGTCGTTTCAAAACG........................ 25 0 4 0.25 1 0 1 0 0 0
....................................................................................TAGCGACATATCTCCGACGACA................................................................................................................................................. 22 0 20 0.20 4 0 3 1 0 0
....................................................................................TAGCGACATATCTCCGACGACATATC............................................................................................................................................. 26 0 20 0.20 4 0 4 0 0 0
............................................................................................TATCTCCGACGACATATCTCCGCCCAG.................................................................................................................................... 27 0 20 0.20 4 0 4 0 0 0
......................................................................................................................GTACATTTTTCTGGCGGAGATATGT............................................................................................................ 25 0 20 0.20 4 0 0 2 2 0
...........................................................................................................................................................................TGTAAAACGACATATCATCGCCGGTGA..................................................... 27 0 13 0.15 2 0 2 0 0 0
............................................................................................TATCTCCGACGACATATCTCCGCCCA..................................................................................................................................... 26 0 20 0.15 3 0 1 2 0 0
.....................................................................................................................AGTACATTTTTCTGGCGGAGATATG............................................................................................................. 25 0 20 0.15 3 0 3 0 0 0
.................................................................................GCATAGCGACATATCTCCGACGACA................................................................................................................................................. 25 0 20 0.15 3 0 2 1 0 0
..............................................................................................................................TTCTGGCGGAGATATGTCGCAT....................................................................................................... 22 0 19 0.11 2 2 0 0 0 0
............................................................................................TATCTCCGACGACATATCTCCG......................................................................................................................................... 22 0 20 0.10 2 0 1 1 0 0
....................................................................................................................CAGTACATTTTTCTGGCGGAGATA............................................................................................................... 24 0 20 0.10 2 0 2 0 0 0
......................................................................................................................GTACATTTTTCTGGCGGAGAT................................................................................................................ 21 0 20 0.10 2 0 0 0 2 0
.......................................................................................................................TACATTTTTCTGGCGGAGATA............................................................................................................... 21 0 20 0.10 2 0 1 0 1 0
.................................................................................................CCGACGACATATCTCCGCCCAGTACATT.............................................................................................................................. 28 0 19 0.05 1 0 1 0 0 0
...............................................................................................................................TCTGGCGGAGATATGTCGCATTT..................................................................................................... 23 0 19 0.05 1 0 0 0 0 1
...............................................................................................................................................CGCATGTTTAACTGCGGGG......................................................................................... 19 3 20 0.05 1 0 1 0 0 0
......................................................................................................................GTACATTTTTCTGGCGGAGATATGTC........................................................................................................... 26 0 20 0.05 1 0 0 0 1 0
......................................................................................................................GTACATTTTTCTGGCGGAGATAT.............................................................................................................. 23 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................TTTTTAACGGCGGAGATATGTCG................................................................................. 23 0 20 0.05 1 0 1 0 0 0
........................................................................................................CATATCTCCGCCCAGTACATTTTT........................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
.......................................................................................................ACATATCTCCGCCCAGTACATTTTTC.......................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
.....................................................................................................................AGTACATTTTTCTGGCGGAGATA............................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
........................................................................................................................ACATTTTTCTGGCGGAGATATGTCG.......................................................................................................... 25 0 20 0.05 1 0 0 1 0 0
...........................................................................................................................TTTTTCTGGCGGAGATATGT............................................................................................................ 20 0 20 0.05 1 0 0 0 1 0
..........................................................................................................TATCTCCGCCCAGTACATTTTTCTGGCG..................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................................GAGATATGACGATCCAAAACGT....................... 22 3 20 0.05 1 0 0 0 1 0
.......................................................................................................................TACATTTTTCTGGCGGAGA................................................................................................................. 19 0 20 0.05 1 0 1 0 0 0
......................................................................................GCGACATATCTCCGACGACATAT.............................................................................................................................................. 23 0 20 0.05 1 0 1 0 0 0
....................................................................................................................CAGTACATTTTTCTGGCGGAGATATGT............................................................................................................ 27 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................TACATTTTTCTGGCGGAGATATGTAG.......................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
..............................................................................................TCTCCGACGACATATCTCCGCCCAG.................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
..................................................................................CATAGCGACATATCTCCGACGACATATC............................................................................................................................................. 28 0 20 0.05 1 0 1 0 0 0
......................................................................................................................GTACATTTTTCTGGCGAAGATATGT............................................................................................................ 25 1 20 0.05 1 0 0 1 0 0
....................................................................................TAGCGACATATCTCCGACGACATA............................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
............................................................................................TATCTCCGACGACATATCTCCGC........................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0
............................................................................................TATCTCCGACGACATATCTCCGCCCAC.................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
....................................................................................................................CAGTACATTTTTCTGGCGGAGATATG............................................................................................................. 26 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................TACATTTTTCTGGCGGAGATATG............................................................................................................. 23 0 20 0.05 1 0 1 0 0 0
..............................................................................................TCTCCGACGACATATCTCCGCCCA..................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
.............................................................................................ATCTCCGACGACATATCTCCGCCCAG.................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
.......................................................................................CGACATATCTCCGACGACATATCTCCG......................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

GACACGGGTCTTCCCGTATTCGTATGCAACCGCTAGGGGTGTAAAAACAGCATTCATTGTACCCTTTTGAGATAAATCTTCCGTATCGCTGTATAGAGGCTGCTGTATAGAGGCGGGTCATGTAAAAAGACCGCCTCTATACAGCGTAAAAATTGCCGCCTCTATACAGCAACATTTTGCTGTATAGTAGCGGCCACTAGACACGCCTCTATACAGCAAAGTTTTGCAGTATACATAGAGGCGGCAATCTT
************************************************************************************************************...................(((((((((((((.((.........)))))))))))))))************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body
.................................................................................................................................................................................................CCACTAGACACGCCTCTATACAGCAAAGT............................. 29 0 4 0.25 1 1 0 0 0
..............................................................................................................................................................................................CGGCCACTAGACACGCCTCTATACAG................................... 26 0 4 0.25 1 0 1 0 0
........................................................................................................................................................................................................ACACGCCTCTATACAGCAAAGT............................. 22 0 4 0.25 1 1 0 0 0
..............................................................................................................................................................................................CGGCCACTAGACACGCCTCTATAC..................................... 24 0 4 0.25 1 1 0 0 0
............................................................................TATTCCGTATCGCTGTATAGAG......................................................................................................................................................... 22 1 7 0.14 1 0 1 0 0
.............................................................................................................................................................................................GCGACCACCAGACATGCCTC.......................................... 20 3 8 0.13 1 1 0 0 0
....................................................................................................................GTCATGTAGGGAGACCGCCTC.................................................................................................................. 21 3 20 0.10 2 0 0 2 0
........................................................................................................GTATAGAGGCGGGTCATGTAAAAAG.......................................................................................................................... 25 0 20 0.10 2 2 0 0 0
..................................................................................................................GGGTCATGTAAAAAGACCGCCTCTAT............................................................................................................... 26 0 20 0.05 1 1 0 0 0
.......................................................................................................TGTATAGAGGCGGGTCATGTAAAAAG.......................................................................................................................... 26 0 20 0.05 1 1 0 0 0
.................................................................................................GGCTGCTGTATAGAGGCGGGTC.................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
.....................................................................................................TCTGTATAGAGGCGGGTCATGTAAA............................................................................................................................. 25 1 20 0.05 1 0 1 0 0
...ATGGGTCTTCGCGTATTTG..................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0
.......................................................................................................TGTATAGAGGCGGGTCATGTAAAAA........................................................................................................................... 25 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................................GCTGTATAGTAGCGGCCATTAGAC................................................. 24 1 20 0.05 1 1 0 0 0
............................................................................................................................................................................................................GCCTCTATACAGCAAAGTTTTGCAGT..................... 26 0 20 0.05 1 0 1 0 0
...................................................................................TATCGCTGTATAGAGGCTGCTGT................................................................................................................................................. 23 0 20 0.05 1 0 0 0 1
..............................................................................................AGAGGCTGCTGTATAGAGGCGGGTC.................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
.......................................................................................................................................................ATTGCCGCCTCTATACAGCA................................................................................ 20 0 20 0.05 1 1 0 0 0
...................................................................................................................GGTCATGTAAAAAGACCGCCTCTAT............................................................................................................... 25 0 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004945:379124-379374 + dwi_3560 CTGTG--------CCCA-GAAGGGCATAAGCATACGTTGGCGATCCCCACATTT--TTGTCGTAAGTAACA----TGGGAAAAC----TCTATTTAGAAGGCATAGCGACATATCTCCGA-CGACATATCTCCGCCCAGTACATTTT-------TCTGGCGGAGATATGTCGCA--------------------------TTTTTAACGGCGGAGATATGTCGTTG--TAAAACGACATATCATC--GCCGGTGA-------------TCT--GTGCGGAGATATGTCGTT-TCAAAACGTCATATG-TATCTCCGC--------CG--TTAGAA
droVir3 scaffold_6637:856-1116 + AAAAC--------GGCG-GAGATATATCG-------TTTCAGATCGACATATCTTATTTTCGTTATTTAAA----CGGCGGAGATATGTCGATTCA--------------------GAAA-CGACATATCTTATTTTCG-ATATTAA-------AACGGCGGAGATATGTCGTTTCTGAACGACATATCTTTTTTTCGTTGTTTAAACGGCGGAGATATGTCGTTT--CAGAACGACATATCTTATTTTCGATAT-------------TAAAACGGCGGAGATATGTCGTT-TCAGAACGACATATCTTATTTTCGA--------AA-ATTAAAA
droMoj3 scaffold_6680:7214775-7214830 + CTGTG--------CCCA-GAAGGGCATCAACATACGCTGGCGATCCCAACATTT--CTGCCGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:17846478-17846535 - CTGCG--------CCCA-GAAGGGCATCAATATCCGCTGGAGATCCCAACATTT--CTGTCGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
dp5 Unknown_group_177:47847-48002 + ---------------------------------------------------------------------------------------------------GGCATAGCGTCATATCTCCGA-CGACATATCTCCGCCCAGTACATTTT-------GCCGGCGGAATTATGTCGCT--------------------------TTTTTTCTGGCGGACTTATGTCGTTT--GAAAGCGTCATATC--------------------------TCC--GCTCGGAGATATGACGTT-TTGAAACGACATA-----TCTCCGC--------CG--TGTCAC
droPer2 scaffold_6336:1232-1391 + AA-----------------------------------------------------------------------------------------------AGGGCATAGCGTCATATCTCCGA-CGACATATCTCCGCCCAGTACATTTT-------GCCGGCGGAATTATGTCGCT--------------------------TTTTTTCTGGCGGACTTATGTCGTTT--GAAAGCGTCATATC--------------------------TCC--GCTCGGAGATATGACGTT-TTGAAACGACATA-----TCTCCGC--------CG--TGTTAC
droAna3 scaffold_13337:21535104-21535205 - CTGTG--------CCCA-GAAGGGCATCCACATACGATGGAGGTCTCAGCACTT--CTGCCGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCTTTTATT--------------------------TCC----------ATATAAGTTC-TAGGGAAAAATTA-----TCTCCGA--------C---------
droBip1 scf7180000396264:57189-57352 + ---------------------------------------------------------------------------------------------------GGCATAGCGATATATCTCCGC----------------TGGTACATTTT-------TCTGGCGGAGATATGTAGCT--------------------------GTTTTTGTGGCGGAGATATCTTGTGTGTTCACTCGCTATCTTTGC--G---ACAT-------------ATCTCCGCCAGCGACATA---TT-CAAAAGCGACATACA-TATTTCCCCGAGGAAGTAGTGCTACCA
droKik1 scf7180000301840:36866-37083 - TCACCACAGCCTCGTCG---------------------------------------------GAAAGG-TTAGAAG-----AAC----CG------AACGGCATAGCGACATAAGTCCAA-CGACATATCTCCGCCCGGTACATTTT-------TCGGGCGGACTTATATGGCT--------------------------TTTTTTCCGGCGGAGTTATGTCGCTT--TAAAACAACATAGCTCC--GCCGGAAAAAAGCGACATATTTCC--GCGCGGAGTTATGTCGTT-TGCAAGCGACATA-----GCTCCGC--------CA--AATTGC
droFic1 scf7180000453910:965690-965813 - AGA-----------------------------------------------------------------------------------------------AGAAATAGCAACATGTCTGCGA-CGACATTTCTCCAAACA-TATAGTTTCCCGATTTTGGGCGGAATTATGTGTCT--------------------------TA-TTTCCAG------------------------------------------------------------------CGGAGATATGATGCA-TTAAAAGGACATA-----TTTGCGC--------CA-------G
droEle1 scf7180000488559:9969-10157 + TCTTT--------GGCGAAAACAACA---AG--------------------------------------TT----A-----AAC----TGTA-----TCGGGATAACCACATATCTCCGC-CGTCATATCTCCGCCCAGTGTATTTT-------GTCGGCGGAGATATGTAGTG--------------------------ATTTATTTGGGGGAGTTCTGTCGTTT--AAAAGCGACATAGCTCC--CCCAT----------------TCC--CCGCGGAGTTATG---TT-TTAAAACGACATACA-TATCTCCGC------------------
droRho1 scf7180000775251:42131-42299 + AG-------------------------------------------------------------------------------------------------GGGATAACGACATATCTCCGC-CGTCATATCTCCGCCCAGTGTATTTT-------GTCGGCGGAGATATGTCGTG--------------------------ATTTATTTGGGGGAATTCTGTCGCTT--AAAAGCGACAGAGCTCC--CCCATTGA-------------CTA--ACGCGGAGTTATGTCGTC-TAAAAACGACATA-----ATTCCGC--------CC--TTCTTC
droBia1 scf7180000299101:14004-14191 + AACA-----------CG-AAAACCTAGCTGTCTCTA------------------------------------------------------------TAAGGCATAGCGATATATCTCCGCACGACATATCTCCGCTCGGTACAATTT-------TCGAGCGGAATTATGTCGTT--------------------------TT--TTTTGGCGGAGCTATATCGTTT-TTAAAACGTCATATC--------------------------TCC--GCGCGGAGTTATGTCGCTTTTAAAACGACATATG-TATCTCCGC--------TG--ACCAAA
droTak1 scf7180000414950:174-373 - CGTAT-----------------------------------------------TT--CTATTGCAGGTAGTA----TA-------------TATGTCGGAGGGATAACGACACATCTCCGC-CGTCATATCTCCGCCCAGTGCATTTC-------GTCGGCGGAAATATATCGCG--------------------------ATTTATGTGGCGGAGATATGACATTT--AAAAACGACATATTTCC--CCCGTTAA-------------TCA--ACGCGGAGATATGTCTTT-TTTAAACGTCATA-----TCTCCGC--------CC--TTCTGC
droEug1 scf7180000409456:23283-23338 + TTGTG--------CCCA-GAAGGGTATCAACATTCGATGGAGGTCCCAGCATTT--TTGCCGTGAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3L:13845541-13845597 + TTGTG--------CCCA-GAAAGGCATCAATATTCGCTGGAGATCACAGCATTT--CTGCCGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droSim2 3l:13517264-13517320 + TTGTG--------CCCA-AAAAGGCATCAATATTCGCTGGAGATCACAGCATTT--CTGCCGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droSec2 scaffold_0:5988703-5988759 + TTGTG--------CCCA-AAAAGGCATCAATATTCGCTGGAGATCACAGCATTT--CTGCCGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droYak3 v2_chrUn_120:42327-42501 - GAC------------------------------------------------------------------------------------------------GGCATAGCGACATATGTCCTCGCGACATATCTCCTCCCAGTACATTTT-------CGTGTAGGAGCTATGTCGCT--------------------------TTTATTTCGGAGGAGATATGTCGTTT-TGAAAGCGTCATTTGTGT--TAAAAAAA-----------ACTTC--GGGAGGAGATATGACGCTTTCAAAACGACATA-----TCTCCTC--------CG--AACTCA
droEre2 scaffold_4929:23995267-23995423 - ---------------------------------------------------------------------------------------------------GGCATAGAGACCTATCTTTGC-CGTCATATCTCCGCCTAGCAAACTTT-------TCGGGCGGAATCATGTAGCT--------------------------TTT-TTTTGACGGAGCTTTTTAGTTT-TGTAAATGTCATATC--------------------------TCC--AAGCGGAGTTATAACGTTTTCTTAACGACATT-----TCTCCGC--------CG--AACCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CTGTG--------CCCA-GAAGGGCATAAGCATACGTTGGCGATCCCCACATTT--TTGTCGTAAGTAACA----TGGGAAAAC----TCTATTTAGAAGGCATAGCGACATATCTCCGA-CGACATATCTCCGCCCAGTACATTTT-------TCTGGCGGAGATATGTCGCA--------------------------TTTTTAACGGCGGAGATATGTCGTTG--TAAAACGACATATCATC--GCCGGTGA-------------TCT--GTGCGGAGATATGTCGTT-TCAAAACGTCATATG-TATCTCCGC--------CG--TTAGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................AAGGGCATAAGCATACGTTGGCG.....................................................................................................................................................................................................................................................................................................2311.00100010
...........................................................................................................................................TACATTTT-------TCTGGCGGAGATATGT.....................................................................................................................................................................24200.7515013020
.......................................................................................................TAGCGACATATCTCCGA-CGACATATCTC...........................................................................................................................................................................................................28200.30606000
............................................................................................................................................................................................................................................................................TCT--GTGCGGAGATATGTCGTT-TCAAAAA....................................2840.25101000
..................................................................................................................................................................................................................................................................................TGCGGAGATATGTCGTT-TCAAAACG...................................2540.25101000
.......................................................................................................TAGCGACATATCTCCGA-CGACA.................................................................................................................................................................................................................22200.20403010
.......................................................................................................TAGCGACATATCTCCGA-CGACATATC.............................................................................................................................................................................................................26200.20404000
...............................................................................................................TATCTCCGA-CGACATATCTCCGCCCAG....................................................................................................................................................................................................27200.20404000
..........................................................................................................................................GTACATTTT-------TCTGGCGGAGATATGT.....................................................................................................................................................................25200.20400220
................................................................................................................................................................................................................................TG--TAAAACGACATATCATC--GCCGGTGA-------------...................................................................27130.15202000
...............................................................................................................TATCTCCGA-CGACATATCTCCGCCCA.....................................................................................................................................................................................................26200.15301020
.........................................................................................................................................AGTACATTTT-------TCTGGCGGAGATATG......................................................................................................................................................................25200.15303000
....................................................................................................GCATAGCGACATATCTCCGA-CGACA.................................................................................................................................................................................................................25200.15302010
..................................................................................................................................................T-------TCTGGCGGAGATATGTCGCA--------------------------T......................................................................................................................................22190.11220000
...............................................................................................................TATCTCCGA-CGACATATCTCCG.........................................................................................................................................................................................................22200.10201010
........................................................................................................................................CAGTACATTTT-------TCTGGCGGAGATA........................................................................................................................................................................24200.10202000
..........................................................................................................................................GTACATTTT-------TCTGGCGGAGAT.........................................................................................................................................................................21200.10200200
...........................................................................................................................................TACATTTT-------TCTGGCGGAGATA........................................................................................................................................................................21200.10201100
....................................................................................................................CCGA-CGACATATCTCCGCCCAGTACATT..............................................................................................................................................................................................28190.05101000
..........................................................................................................................................................TCTGGCGGAGATATGTCGCA--------------------------TTT....................................................................................................................................23190.05100001
..........................................................................................................................................GTACATTTT-------TCTGGCGGAGATATGTC....................................................................................................................................................................26200.05100100
..........................................................................................................................................GTACATTTT-------TCTGGCGGAGATAT.......................................................................................................................................................................23200.05101000
........................................................................................................................................................................................................TTTTTAACGGCGGAGATATGTCG................................................................................................................23200.05101000
............................................................................................................................CATATCTCCGCCCAGTACATTTT-------T....................................................................................................................................................................................24200.05101000
...........................................................................................................................ACATATCTCCGCCCAGTACATTTT-------TC...................................................................................................................................................................................26200.05101000
.........................................................................................................................................AGTACATTTT-------TCTGGCGGAGATA........................................................................................................................................................................23200.05101000
............................................................................................................................................ACATTTT-------TCTGGCGGAGATATGTCG...................................................................................................................................................................25200.05100010
...............................................................................................................................................TTTT-------TCTGGCGGAGATATGT.....................................................................................................................................................................20200.05100100
..............................................................................................................................TATCTCCGCCCAGTACATTTT-------TCTGGCG..............................................................................................................................................................................28200.05101000
...........................................................................................................................................TACATTTT-------TCTGGCGGAGA..........................................................................................................................................................................19200.05101000
.........................................................................................................GCGACATATCTCCGA-CGACATAT..............................................................................................................................................................................................................23200.05101000
........................................................................................................................................CAGTACATTTT-------TCTGGCGGAGATATGT.....................................................................................................................................................................27200.05101000
.................................................................................................................TCTCCGA-CGACATATCTCCGCCCAG....................................................................................................................................................................................................25200.05101000
.....................................................................................................CATAGCGACATATCTCCGA-CGACATATC.............................................................................................................................................................................................................28200.05101000
.......................................................................................................TAGCGACATATCTCCGA-CGACATA...............................................................................................................................................................................................................24200.05101000
...............................................................................................................TATCTCCGA-CGACATATCTCCGC........................................................................................................................................................................................................23200.05101000
...............................................................................................................TATCTCCGA-CGACATATCTCCGCCCAC....................................................................................................................................................................................................27200.05101000
........................................................................................................................................CAGTACATTTT-------TCTGGCGGAGATATG......................................................................................................................................................................26200.05101000
...........................................................................................................................................TACATTTT-------TCTGGCGGAGATATG......................................................................................................................................................................23200.05101000
.................................................................................................................TCTCCGA-CGACATATCTCCGCCCA.....................................................................................................................................................................................................24200.05101000
................................................................................................................ATCTCCGA-CGACATATCTCCGCCCAG....................................................................................................................................................................................................26200.05101000
..........................................................................................................CGACATATCTCCGA-CGACATATCTCCG.........................................................................................................................................................................................................27200.05101000
droVir3
AAAAC--------GGCG-GAGATATATCG-------TTTCAGATCGACATATCTTATTTTCGTTATTTAAA----CGGCGGAGATATGTCGATTCA--------------------GAAA-CGACATATCTTATTTTCG-ATATTAA-------AACGGCGGAGATATGTCGTTTCTGAACGACATATCTTTTTTTCGTTGTTTAAACGGCGGAGATATGTCGTTT--CAGAACGACATATCTTATTTTCGATAT-------------TAAAACGGCGGAGATATGTCGTT-TCAGAACGACATATCTTATTTTCGA--------AA-ATTAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................TAA-------AACGGCGGAGATATGTCG...................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................AA-CGACATATCTTATTTTCG-...................................................................................................................................................................................................20200.051000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................TTAAACGGCGGAGATATGTCG................................................................................................................21200.051000000001000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTAAACGGCGGAGATATGTCGTTT--CAGAACGACATATCTC...........................................................................................40200.051000000000000000000000000000000000000000000000000000000000010000
..................................................................TTAAA----CGGCGGAGATATGTCG....................................................................................................................................................................................................................................................21200.051000000001000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TAAAACGGCGGAGATATGTCGT.............................................22200.051000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................A-------AACGGCGGAGATATGTC....................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000100000
droMoj3
CTGTG--------CCCA-GAAGGGCATCAACATACGCTGGCGATCCCAACATTT--CTGCCGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CTGCG--------CCCA-GAAGGGCATCAATATCCGCTGGAGATCCCAACATTT--CTGTCGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................CATCAATATCCGCTGGAGATCC.................................................................................................................................................................................................................................................................................................2211.00110
dp5
---------------------------------------------------------------------------------------------------GGCATAGCGTCATATCTCCGA-CGACATATCTCCGCCCAGTACATTTT-------GCCGGCGGAATTATGTCGCT--------------------------TTTTTTCTGGCGGACTTATGTCGTTT--GAAAGCGTCATATC--------------------------TCC--GCTCGGAGATATGACGTT-TTGAAACGACATA-----TCTCCGC--------CG--TGTCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................TATCTCCGA-CGACATATCTCCGCCC......................................................................................................................................................................................................2563.332001820000000
...............................................................................................................TATCTCCGA-CGACATATCTCCGCCCAG....................................................................................................................................................................................................2752.401201110000000
...............................................................................................................TATCTCCGA-CGACATATCTCCGC........................................................................................................................................................................................................23102.002001900000100
...............................................................................................................TATCTCCGA-CGACATATCTCCGCC.......................................................................................................................................................................................................24101.801801710000000
...................................................................................................................TCCGA-CGACATATCTCCGCCCAGTA..................................................................................................................................................................................................2551.6080800000000
..................................................................................................................CTCCGA-CGACATATCTCCGCC.......................................................................................................................................................................................................21101.501501200000300
.................................................................................................................TCTCCGA-CGACATATCTCCGCCC......................................................................................................................................................................................................2361.5090900000000
...............................................................................................................TATCTCCGA-CGACATATCTCCGCCCA.....................................................................................................................................................................................................2661.3380800000000
.................................................................................................................TCTCCGA-CGACATATCTCCGC........................................................................................................................................................................................................21101.301301010000200
.................................................................................................................TCTCCGA-CGACATATCTCCGCCCAG....................................................................................................................................................................................................2550.8040400000000
.................................................................................................................TCTCCGA-CGACATATCTCCGCC.......................................................................................................................................................................................................22100.8080800000000
..............................................................................................................................TATCTCCGCCCAGTACATTTT-------GCCGG................................................................................................................................................................................2650.8040310000000
.................................................................................................................TCTCCGA-CGACATATCTCCGCCCAGT...................................................................................................................................................................................................2650.6030300000000
...................................................................................................................TCCGA-CGACATATCTCCGCCCAG....................................................................................................................................................................................................2350.6030300000000
...................................................................................................................TCCGA-CGACATATCTCCGCC.......................................................................................................................................................................................................20100.6060500100000
.................................................................................................................TCTCCGA-CGACATATCTCCGCCCA.....................................................................................................................................................................................................2460.5030300000000
...............................................................................................................TATCTCCGA-CGACATATCTCCG.........................................................................................................................................................................................................22100.5050410000000
...............................................................................................................TATCTCCGA-CGACATATCTCC..........................................................................................................................................................................................................21100.4040400000000
...................................................................................................................TCCGA-CGACATATCTCCGCCCAGTAC.................................................................................................................................................................................................2650.4020200000000
..................................................................................................................CTCCGA-CGACATATCTCCGC........................................................................................................................................................................................................20100.4040400000000
..............................................................................................................................TATCTCCGCCCAGTACATTTT-------GCC..................................................................................................................................................................................2450.4020200000000
...............................................................................................................................................................................................................TGGCGGACTTATGTCGTTT--GA.........................................................................................................2160.3320000000020
...................................................................................................................TCCGA-CGACATATCTCCGCCCT.....................................................................................................................................................................................................2260.3320000000200
....................................................................................................................CCGA-CGACATATCTCCGC........................................................................................................................................................................................................18100.3030000000300
...................................................................................................................TCCGA-CGACATATCTCCGCT.......................................................................................................................................................................................................20100.3030000000300
................................................................................................................ATCTCCGA-CGACATATCTCCG.........................................................................................................................................................................................................21100.3030300000000
.....................................................................................................................................GCCCAGTACATTTT-------GCCGGCGGA............................................................................................................................................................................2370.2920200000000
.....................................................................................................................................................................TATGTCGCT--------------------------TTTTTTCTGGCGGACT.......................................................................................................................2570.2920200000000
................................................................................................................................................TTT-------GCCGGCGGAATTATGTCGCT--------------------------T......................................................................................................................................2470.2920100001000
.....................................................................................................................................GCCCAGTACATTTT-------GCCGGCGG.............................................................................................................................................................................2270.2920200000000
.................................................................................................................TCTCCGA-CGACATATCTCCG.........................................................................................................................................................................................................20100.2020000000200
...............................................................................................................TATCTCCGA-CGACATATCTC...........................................................................................................................................................................................................20100.2020200000000
............................................................................................................TCATATCTCCGA-CGACATATCTCCGC........................................................................................................................................................................................................2650.2010100000000
..............................................................................................................................TATCTCCGCCCAGTACATTTT-------GCCG.................................................................................................................................................................................2550.2010100000000
...................................................................................................................TCCGA-CGACATATCTCCGCCCAGTACATT..............................................................................................................................................................................................2950.2010100000000
..................................................................................................................CTCCGA-CGACATATCTCCGCCT......................................................................................................................................................................................................22100.2020200000000
............................................................................................................TCATATCTCCGA-CGACATATCTCCG.........................................................................................................................................................................................................2550.2010100000000
...................................................................................................................TCCGA-CGACATATCTCCGCCCAGTACA................................................................................................................................................................................................2750.2010100000000
...................................................................................................................TCCGA-CGACATATCTCCGCCCAGTACAG...............................................................................................................................................................................................2850.2010100000000
...................................................................................................................TCCGA-CGACATATCTCCGCCCAGT...................................................................................................................................................................................................2450.2010100000000
..................................................................................................................CTCCGA-CGACATATCTCCGCCCAGTA..................................................................................................................................................................................................2650.2010100000000
..................................................................................................................CTCCGA-CGACATATCTCCGCCCAG....................................................................................................................................................................................................2450.2010100000000
.................................................................................................................TCTCCGA-CGACATATCTCCGCCCAGTA..................................................................................................................................................................................................2750.2010100000000
...................................................................................................................TCCGA-CGACATATCTCCGCCCAGTACAA...............................................................................................................................................................................................2850.2010100000000
...................................................................................................................TCCGA-CGACATATCTCCGC........................................................................................................................................................................................................19100.2020200000000
................................................................................................................ATCTCCGA-CGACATATCTCCGCC.......................................................................................................................................................................................................23100.2020200000000
.....................................................................................................................CGA-CGACATATCTCCGCCCAG....................................................................................................................................................................................................2150.2010100000000
..............................................................................................................................TATCTCCGCCCAGTACATTTT-------G....................................................................................................................................................................................2250.2010100000000
...................................................................................................................TCCGA-CGACATATCTCCGCCC......................................................................................................................................................................................................2160.1710100000000
...............................................................................................................TATCTCCGA-CGACATATCTCCGCCCT.....................................................................................................................................................................................................2660.1710010000000
.................................................................................................................................CTCCGCCCAGTACATTTT-------GCCGG................................................................................................................................................................................2360.1710100000000
................................................................................................................................................................................................................................................TC--------------------------TCC--GCTCGGAGATATGACGTT-T..........................................2460.1710100000000
........................................................................................................................................................................................................................TATGTCGTTT--GAAAGCGTCATATC--------------------------T..................................................................2560.1710100000000
...................................................................................................................TCCGA-CGACATATCTCCGCCCA.....................................................................................................................................................................................................2260.1710100000000
...........................................................................................................................................TACATTTT-------GCCGGCGGAATTATG......................................................................................................................................................................2360.1710100000000
.....................................................................................................................CGA-CGACATATCTCCGCCCAC....................................................................................................................................................................................................2160.1710100000000
..................................................................................................................CTCCGA-CGACATATCTCCGCCC......................................................................................................................................................................................................2260.1710100000000
..............................................................................................................................................................................................................CTGGCGGACTTATGTCGTTT--GA.........................................................................................................2260.1710000001000
...........................................................................................................................................TACATTTT-------GCCGGCGGAATTATGT.....................................................................................................................................................................2460.1710100000000
.............................................................................................................................................................................................................TCTGGCGGACTTATGTCGTTT--GAAAGCG....................................................................................................2860.1710100000000
..................................................................................................................................................................................................................................................................................CTCGGAGATATGACGTT-TTGAAACGACA................................2860.1710100000000
............................................................................................................................................................................................................................................................................TCC--GCTCGGAGATATGACGTT-TT.........................................2360.1710100000000
...................................................................................................................................................................................................................................................................................TCGGAGATATGACGTT-TTGAAACGAC.................................2660.1710000000100
.........................................................................................................................................................................................................TTTTTCTGGCGGACTTATGTCGT...............................................................................................................2360.1710100000000
...............................................................................................................................................................................................................TGGCGGACTTATGTCGTTT--GAAAGCGT...................................................................................................2760.1710100000000
................................................................................................................ATCTCCGA-CGACATATCTCCGCCC......................................................................................................................................................................................................2460.1710100000000
..............................................................................................................ATATCTCCGA-CGACATATCTCCGCCCA.....................................................................................................................................................................................................2760.1710100000000
...............................................................................................................................................................................................................TGGCGGACTTATGTCGTTT--GAAAG......................................................................................................2460.1710100000000
.............................................................................................................................................................................................................TCTGGCGGACTTATGTCGTTT--GAAAGC.....................................................................................................2760.1710100000000
...............................................................................................................................ATCTCCGCCCAGTACATTTT-------GCCG.................................................................................................................................................................................2460.1710100000000
..................................................................................................................................................T-------GCCGGCGGAATTATGTCGCT--------------------------TTT....................................................................................................................................2470.1410100000000
....................................................................................................................................................................TTATGTCGCT--------------------------TTTTTTCTGGCGGACT.......................................................................................................................2670.1410100000000
.........................................................................................................................................................................................................................................CGTCATATC--------------------------TCC--GCTCGGAGA.....................................................2170.1410100000000
..............................................................................................................................................ATTTT-------GCCGGCGGAATTATG......................................................................................................................................................................2070.1410100000000
.....................................................................................................................................GCCCAGTACATTTT-------GCCGGC...............................................................................................................................................................................2070.1410100000000
...............................................................................................................................................................................................................................TTT--GAAAGCGTCATATC--------------------------TCC--GCT...........................................................2370.1410100000000
.................................................................................................................................................................................................................................T--GAAAGCGTCATATC--------------------------TCC--GCTCGGA.......................................................2570.1410010000000
..................................................................................................................................................T-------GCCGGCGGAATTATGTCGCT--------------------------TTTTAAA................................................................................................................................2870.1410100000000
................................................................................................................................................TTT-------GCCGGCGGAATTATGC.....................................................................................................................................................................1970.1410100000000
................................................................................................................................................TTT-------GCCGGCGGAATTATGTC....................................................................................................................................................................2070.1410100000000
.....................................................................................................................................GCCCAGTACATTTT-------GCCGGCG..............................................................................................................................................................................2170.1410100000000
.....................................................................................................................................GCCCAGTACATTTT-------GCCGGCGGAAT..........................................................................................................................................................................2570.1410100000000
..................................................................................................................................................T-------GCCGGCGGAATTATGTCGCT--------------------------T......................................................................................................................................2280.1310100000000
.................................................................................................................TCTCCGA-CGACATATCTCCGCTTT.....................................................................................................................................................................................................24100.1010100000000
...................................................................................................................TCCGA-CGACATATCTCCGTT.......................................................................................................................................................................................................20100.1010100000000
..............................................................................................................ATATCTCCGA-CGACATATCTCCG.........................................................................................................................................................................................................23100.1010100000000
.............................................................................................................CATATCTCCGA-CGACATATCTCC..........................................................................................................................................................................................................23100.1010100000000
.....................................................................................................................................................................................................................................................................................................TGAAACGACATA-----TCTCCGC--------CG--TG....23100.1010100000000
...............................................................................................................TATCTCCGA-CGACATATCTCCGCCA......................................................................................................................................................................................................25100.1010100000000
.............................................................................................................CATATCTCCGA-CGACATATCTCCGC........................................................................................................................................................................................................25100.1010010000000
....................................................................................................................CCGA-CGACATATCTCCGCC.......................................................................................................................................................................................................19100.1010100000000
..................................................................................................................CTCCGA-CGACATATCTCCGCT.......................................................................................................................................................................................................21100.1010100000000
..............................................................................................................ATATCTCCGA-CGACATATCTC...........................................................................................................................................................................................................21100.1010100000000
.............................................................................................................CATATCTCCGA-CGACATATCTCCGCC.......................................................................................................................................................................................................26100.1010010000000
.....................................................................................................................................................................................................................................................................................................TGAAACGACATA-----TCTCCGC--------CG--TGT...24100.1010100000000
...................................................................................................................TCCGA-CGACATATCTCCGCCT......................................................................................................................................................................................................21100.1010100000000
................................................................................................................ATCTCCGA-CGACATATCTCC..........................................................................................................................................................................................................20100.1010100000000
.................................................................................................................................................................................................................................................................................................TT-TTGAAACGACATA-----TCTCCG...................21110.0910100000000
.................................................................................................................................................................................................................................................................................................TT-TTGAAACGACATA-----TCTCCGC--------CG--......24110.0910100000000
............................................................................................................................................................................................................................................................................................TGACGTT-TTGAAACGACATA-----TCTCCGC--------C.........28110.0910010000000
..................................................................................................................................................................................................................................................................................................T-TTGAAACGACATA-----TCTCCGC--------..........21110.0910100000000
.......................................................................................................................................................................................................................................................................................................AAACGACATA-----TCTCCGC--------CG--TG....21130.0810100000000
droPer2
AA-----------------------------------------------------------------------------------------------AGGGCATAGCGTCATATCTCCGA-CGACATATCTCCGCCCAGTACATTTT-------GCCGGCGGAATTATGTCGCT--------------------------TTTTTTCTGGCGGACTTATGTCGTTT--GAAAGCGTCATATC--------------------------TCC--GCTCGGAGATATGACGTT-TTGAAACGACATA-----TCTCCGC--------CG--TGTTACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................TTTCTGGCGGACTTATGTCGT...............................................................................................................2120.501100000
...............................................................................................................TATCTCCGA-CGACATATCTCCGT........................................................................................................................................................................................................2350.201010000
...............................................................................................................TATCTCCGA-CGACATATCTCCGC........................................................................................................................................................................................................2350.201010000
...............................................................................................................TATCTCCGA-CGACATATCTCCG.........................................................................................................................................................................................................2250.201010000
...................................................................................................................TCCGA-CGACATATCTCCGCCT......................................................................................................................................................................................................2150.201010000
droAna3
CTGTG--------CCCA-GAAGGGCATCCACATACGATGGAGGTCTCAGCACTT--CTGCCGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCTTTTATT--------------------------TCC----------ATATAAGTTC-TAGGGAAAAATTA-----TCTCCGA--------C---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................TACGATGGAGGTCTCAGCA............................................................................................................................................................................................................................................................................................1911.001100000
droBip1
---------------------------------------------------------------------------------------------------GGCATAGCGATATATCTCCGC----------------TGGTACATTTT-------TCTGGCGGAGATATGTAGCT--------------------------GTTTTTGTGGCGGAGATATCTTGTGTGTTCACTCGCTATCTTTGC--G---ACAT-------------ATCTCCGCCAGCGACATA---TT-CAAAAGCGACATACA-TATTTCCCCGAGGAAGTAGTGCTACCASizeHit CountTotal NormTotal
No Reads
droKik1
TCACCACAGCCTCGTCG---------------------------------------------GAAAGG-TTAGAAG-----AAC----CG------AACGGCATAGCGACATAAGTCCAA-CGACATATCTCCGCCCGGTACATTTT-------TCGGGCGGACTTATATGGCT--------------------------TTTTTTCCGGCGGAGTTATGTCGCTT--TAAAACAACATAGCTCC--GCCGGAAAAAAGCGACATATTTCC--GCGCGGAGTTATGTCGTT-TGCAAGCGACATA-----GCTCCGC--------CA--AATTGCSizeHit CountTotal NormTotal
No Reads
droFic1
AGA-----------------------------------------------------------------------------------------------AGAAATAGCAACATGTCTGCGA-CGACATTTCTCCAAACA-TATAGTTTCCCGATTTTGGGCGGAATTATGTGTCT--------------------------TA-TTTCCAG------------------------------------------------------------------CGGAGATATGATGCA-TTAAAAGGACATA-----TTTGCGC--------CA-------GSizeHit CountTotal NormTotal
No Reads
droEle1
TCTTT--------GGCGAAAACAACA---AG--------------------------------------TT----A-----AAC----TGTA-----TCGGGATAACCACATATCTCCGC-CGTCATATCTCCGCCCAGTGTATTTT-------GTCGGCGGAGATATGTAGTG--------------------------ATTTATTTGGGGGAGTTCTGTCGTTT--AAAAGCGACATAGCTCC--CCCAT----------------TCC--CCGCGGAGTTATG---TT-TTAAAACGACATACA-TATCTCCGC------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AG-------------------------------------------------------------------------------------------------GGGATAACGACATATCTCCGC-CGTCATATCTCCGCCCAGTGTATTTT-------GTCGGCGGAGATATGTCGTG--------------------------ATTTATTTGGGGGAATTCTGTCGCTT--AAAAGCGACAGAGCTCC--CCCATTGA-------------CTA--ACGCGGAGTTATGTCGTC-TAAAAACGACATA-----ATTCCGC--------CC--TTCTTCSizeHit CountTotal NormTotal
No Reads
droBia1
AACA-----------CG-AAAACCTAGCTGTCTCTA------------------------------------------------------------TAAGGCATAGCGATATATCTCCGCACGACATATCTCCGCTCGGTACAATTT-------TCGAGCGGAATTATGTCGTT--------------------------TT--TTTTGGCGGAGCTATATCGTTT-TTAAAACGTCATATC--------------------------TCC--GCGCGGAGTTATGTCGCTTTTAAAACGACATATG-TATCTCCGC--------TG--ACCAAASizeHit CountTotal NormTotal
No Reads
droTak1
CGTAT-----------------------------------------------TT--CTATTGCAGGTAGTA----TA-------------TATGTCGGAGGGATAACGACACATCTCCGC-CGTCATATCTCCGCCCAGTGCATTTC-------GTCGGCGGAAATATATCGCG--------------------------ATTTATGTGGCGGAGATATGACATTT--AAAAACGACATATTTCC--CCCGTTAA-------------TCA--ACGCGGAGATATGTCTTT-TTTAAACGTCATA-----TCTCCGC--------CC--TTCTGCSizeHit CountTotal NormTotal
No Reads
droEug1
TTGTG--------CCCA-GAAGGGTATCAACATTCGATGGAGGTCCCAGCATTT--TTGCCGTGAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTGTG--------CCCA-GAAAGGCATCAATATTCGCTGGAGATCACAGCATTT--CTGCCGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................TCAATATTCGCTGGAGATC..................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CAATATTCGCTGGAGATCA.................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTGTG--------CCCA-AAAAGGCATCAATATTCGCTGGAGATCACAGCATTT--CTGCCGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TTGTG--------CCCA-AAAAGGCATCAATATTCGCTGGAGATCACAGCATTT--CTGCCGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GAC------------------------------------------------------------------------------------------------GGCATAGCGACATATGTCCTCGCGACATATCTCCTCCCAGTACATTTT-------CGTGTAGGAGCTATGTCGCT--------------------------TTTATTTCGGAGGAGATATGTCGTTT-TGAAAGCGTCATTTGTGT--TAAAAAAA-----------ACTTC--GGGAGGAGATATGACGCTTTCAAAACGACATA-----TCTCCTC--------CG--AACTCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................GTACATTTT-------CGTGTAGGAGCTATG......................................................................................................................................................................24211.0022020010010000
..........................................................................................................................................GTACATTTT-------CGTGTAGGAGCTATGT.....................................................................................................................................................................25210.5021019100010000
..............................................................................................................................................................TAGGAGCTATGTCGCT--------------------------TTTATTTCGGAG...........................................................................................................................28210.0020000000000020
...........................................................................................................................................................................................................................................TCATTTGTGT--TAAAAAAA-----------ACTTC--GGGAG.........................................................2816.00600000000006
....................................................................................................................................................................................................................................................................................................TCAAAACGACATA-----TCTCCTC--------CG--AAC...2554.0020018100010000
..........................................................................................................................................GTACATTTT-------CGTGTAGGAGCTATGTC....................................................................................................................................................................2624.00806020000000
.......................................................................................................TAGCGACATATGTCCTCGCGACATA...............................................................................................................................................................................................................2542.7511001100000000
...........................................................................................................................................TACATTTT-------CGTGTAGGAGCTATGT.....................................................................................................................................................................2422.50505000000000
....................................................................................................GCATAGCGACATATGTCCTCG......................................................................................................................................................................................................................2142.5010000000000010
....................................................................................................................................................................................................................................................................................................TCAAAACGACATA-----TCTCCTC--------CG--AACT..2652.4012010200000000
..........................................................................................................................................GTACATTTT-------CGTGTAGGAGCTATGTCGC..................................................................................................................................................................2822.00403100000000
........................................................................................................................................CAGTACATTTT-------CGTGTAGGAGCTATG......................................................................................................................................................................2621.50302000010000
....................................................................................................................................................................................................................................................................................................TCAAAACGACATA-----TCTCCTC--------CG--AACTCA2851.20606000000000
..........................................................................................................................................................................CGCT--------------------------TTTATTTCGGAGGAGATATG...................................................................................................................2421.00202000000000
.......................................................................................................................................................................TGTCGCT--------------------------TTTATTTCGGAGGAGATATG...................................................................................................................2721.00200000010001
...........................................................................................................................................TACATTTT-------CGTGTAGGAGCTATGTCGCT--------------------------.......................................................................................................................................2821.00202000000000
..............................................................................................................................................................TAGGAGCTATGTCGCT--------------------------TTTATTTCGGA............................................................................................................................2721.00200000000002
..........................................................................................................................................GTACATTTT-------CGTGTAGGAGCTATGTCG...................................................................................................................................................................2721.00201000010000
.....................................................................................................................................TCCCAGTACATTTT-------CGTGTAGGAGC..........................................................................................................................................................................2540.75301110000000
..................................................................................................................................................................................................................................................................................................TTTCAAAACGACATA-----TCTCCTC--------CG--AAC...2750.60303000000000
...........................................................................................................................................TACATTTT-------CGTGTAGGAGCTATGTCGC..................................................................................................................................................................2720.50100000010000
.....................................................................................................................................................................TATGTCGCT--------------------------TTTATTTCGGAGGAGA.......................................................................................................................2520.50101000000000
..............................................................................................................................................ATTTT-------CGTGTAGGAGCTATGTC....................................................................................................................................................................2220.50101000000000
........................................................................................................................................................................................................TTTATTTCGGAGGAGATATGTCGTTT-............................................................................................................2620.50101000000000
.............................................................................................................................................................................T--------------------------TTTATTTCGGAGGAGATATGTC.................................................................................................................2320.50101000000000
..........................................................................................................................................................CGTGTAGGAGCTATGTCGCT--------------------------TTTATT.................................................................................................................................2620.50100100000000
.................................................................................................................................................TT-------CGTGTAGGAGCTATGTCGCT--------------------------TTTATT.................................................................................................................................2820.50101000000000
........................................................................................................................................CAGTACATTTT-------CGTGTAGGAGCTATGT.....................................................................................................................................................................2720.50101000000000
..........................................................................................................................................GTACATTTT-------CGTGTAGGAGCTATGTCGCT--------------------------.......................................................................................................................................2920.50100000010000
...............................................................................................................................................TTTT-------CGTGTAGGAGCTATGTCGCT--------------------------TT.....................................................................................................................................2620.50100100000000
....................................................................................................................................................................................................................................................................................................TCAAAACGACATA-----TCTCCTC--------CG--AAT...2570.43302100000000
...................................................................................................................................................................................................................................................................................................TTCAAAACGACATA-----TCTCCTC--------CG--AAC...2650.40201100000000
....................................................................................................................................................................................................................................................................................................TCAAAACGACATA-----TCTCCTC--------C.........21160.31500000000005
.............................................................................................................................................CATTTT-------CGTGTAGGAGCT.........................................................................................................................................................................1840.25101000000000
....................................................................................................................................................................................................................................................................................................TCAAAACGACATA-----TCTCCTC--------..........20160.25400000000004
..........................................................................................................................................GTACATTTT-------CGTGTAGGAGCTA........................................................................................................................................................................2240.25101000000000
.......................................................................................................TAGCGACATATGTCCTCGCGACA.................................................................................................................................................................................................................2340.25101000000000
...................................................................................................GGCATAGCGACATATGTCCTCGCGACATA...............................................................................................................................................................................................................2940.25100100000000
.......................................................................................................TAGCGACATATGTCCTCGCGACATAT..............................................................................................................................................................................................................2640.25101000000000
..........................................................................................................................................GTACATTTT-------CGTGTAGGAGCT.........................................................................................................................................................................2140.25101000000000
.....................................................................................................CATAGCGACATATGTCCTCGCGACATA...............................................................................................................................................................................................................2740.25101000000000
.......................................................................................................TAGCGACATATGTCCTCGCGACATATC.............................................................................................................................................................................................................2740.25101000000000
..............................................................................................................................TATCTCCTCCCAGTACATTTT-------CGTG.................................................................................................................................................................................2550.20101000000000
....................................................................................................................................................................................................................................................................................................TCAAAACGACATA-----TCTCCTC--------CG--AACTC.2750.20101000000000
............................................................................................................................................................................................................................................................................................TGACGCTTTCAAAACGACATA-----TCTCC....................26100.20202000000000
..........................................................................................................................................GTACATTTT-------CGTGTAGGAG...........................................................................................................................................................................1950.20100000010000
....................................................................................................................................................................................................................................................................................................TCAAAACGACATA-----TCTCCTC--------CG--AACC..2650.20100100000000
..............................................................................................................................................................................................................TCGGAGGAGATATGTCGTTT-TGAAAGC.....................................................................................................27110.18201100000000
....................................................................................................................CCTCGCGACATATCTCCTCCCAGTA..................................................................................................................................................................................................2560.17101000000000
......................................................................................................................TCGCGACATATCTCCTCCCAGTACATT..............................................................................................................................................................................................2760.17101000000000
...................................................................................................................TCCTCGCGACATATCTCCTCCCAG....................................................................................................................................................................................................2460.17101000000000
...............................................................................................................TATGTCCTCGCGACATATCTCCTCCCT.....................................................................................................................................................................................................2760.17100100000000
...................................................................................................................TCCTCGCGACATATCTCCTCCCAGTA..................................................................................................................................................................................................2660.17101000000000
...................................................................................................................TCCTCGCGACATATCTCCTCCCA.....................................................................................................................................................................................................2360.17101000000000
....................................................................................................................................................................................................................................................................................................TCAAAACGACATA-----TCTCCTC--------CG--AA....2470.14101000000000
.............................................................................................................................................................................................................TTCGGAGGAGATATGTCGTTT-TGAAAGC.....................................................................................................2870.14100100000000
.............................................................................................................................................................................................................TTCGGAGGAGATATGTCGTTT-TGAA........................................................................................................2570.14101000000000
............................................................................................................................................................................................................................................................................TTC--GGGAGGAGATATGACGCT............................................2170.14100100000000
............................................................................................................ACATATGTCCTCGCGACA.................................................................................................................................................................................................................1880.13101000000000
...................................................................................................................................................................................................................GGAGATATGTCGTTT-TGAAAGCGTCA.................................................................................................26100.10101000000000
...............................................................................................................................................................................................................................................................................................CGCTTTCAAAACGACATA-----TCTCC....................23110.09101000000000
..........................................................................................................................................................................................................................................................................................................CGACATA-----TCTCCTC--------CG--AA....18110.09101000000000
.....................................................................................................................................................................................................................................................................................................CAAAACGACATA-----TCTCCTC--------CG--A.....22130.08101000000000
...............................................................................................................................................................................................................CGGAGGAGATATGTCGTTT-TGA.........................................................................................................22130.08110000000000
..................................................................................................................................................................................................................................................................................................TTTCAAAACGACATA-----TCTCCT...................21140.07100000000001
...................................................................................................................................................................................................................................................................................................TTCAAAACGACATA-----TCTCCTA--------..........21150.07100000000001
droEre2
---------------------------------------------------------------------------------------------------GGCATAGAGACCTATCTTTGC-CGTCATATCTCCGCCTAGCAAACTTT-------TCGGGCGGAATCATGTAGCT--------------------------TTT-TTTTGACGGAGCTTTTTAGTTT-TGTAAATGTCATATC--------------------------TCC--AAGCGGAGTTATAACGTTTTCTTAACGACATT-----TCTCCGC--------CG--AACCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 07:28 AM