ID:

dwi_3555

 Coordinate:

scf2_1100000004945:235854-236108 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.2 -24.0 -24.0

Flybase annnotation

exon [dwil_GLEANR_18771:6]; CDS [Dwil\GK18392-cds]; CDS [Dwil\GK18392-cds]; exon [dwil_GLEANR_18771:5]; intron [Dwil\GK18392-in]

No Repeatable elements found

mature
  1. dwi_3555  scf2_1100000004945:236008-236029 -
  2. scf2_1100000004908:54533-54554 +
star
  1. dwi_3555  scf2_1100000004945:235937-235955 -
  2. scf2_1100000004908:54607-54625 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCCATCATCATCATGGAAATGCATCTCAATCATTGTTGCCATGGGAAGTGGTGAACGTTCCCGATGACTATGTTGTTGTTGGCGCTGCAGCCCCTAATGCGGCCTCTGATGATGATGTTGATGAGGTTTTTGGTATTGGCATTGGTGATGTGAGAATTTACTATGCCAGCTGGTCGGATTTGCTAACAAATGGCTGGAGCATTGCTTGGATAGTGTTGCTGGCTGCATTGACGCAGGCCGCATTGTCACAGGCCTCCACGCATGTGCTCAATATGACGGGCATCAGGATTAAAACATCGCTACAGGGTCTAATTTATCGCAAAAGTTTGCTACTGAATGCCAATAATACTGATGA
*********************************************************************************************************************************......(((((((.(((((.........))))))))))))((((((..(((((....)))))))))))((((.((((.....)))).))))..************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 M045
female body
 M020
head
 V119
head
.................................................................................................................................................................................ATTTGCTAAGAAATGGCTG............................................................................................................................................................... 19 1 2 1.00 2 2 0 0 0 0
.................................................................................................................................TTGGTATTGGCATTGGTGATGT............................................................................................................................................................................................................ 22 0 2 0.50 1 1 0 0 0 0
..................................GTTGCCATGGTAAGTGGTGAA............................................................................................................................................................................................................................................................................................................ 21 1 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................................................GCTTGGATAGTGTTGCTGG..................................................................................................................................... 19 0 2 0.50 1 0 1 0 0 0
...........................................................................................................................................................ATTTACTATGCCAGCTGGTCG................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
........................................ATGGGAAGTGGTGAACGTT........................................................................................................................................................................................................................................................................................................ 19 0 2 0.50 1 0 0 0 0 1
.................................................................................................................................................................................ATTTGCTAAGAAATGGCT................................................................................................................................................................ 18 1 2 0.50 1 1 0 0 0 0
.................................................................................................................GATGTTGATGAGGTTTTTGGTATTGGC....................................................................................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................................ATCGCTACAGGGTCTAATTTAT...................................... 22 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................CAACTGATCGGATTTGGTAAC........................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 1 0
............................................GAAGTGGGGAAAGTTCCC..................................................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................AACTGATCGGATTTGGTAAC........................................................................................................................................................................ 20 3 10 0.30 3 0 1 0 2 0
......................................................................TGTTGTTGTTGGCTCTGCAGTCC...................................................................................................................................................................................................................................................................... 23 2 4 0.25 1 0 0 1 0 0
...........................................................CCCGGTGACTACGTTGTT...................................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0
................................................................................................................................................................................................................GATAGTGTTGCTGGCGACA................................................................................................................................ 19 2 5 0.20 1 0 0 0 0 1
...............................................................................................................................................................................GAATTTGCTAAGAAATGGCT................................................................................................................................................................ 20 2 5 0.20 1 1 0 0 0 0
...................................................................................................................................................................................................ACGGCATTGCTTGGATAGT............................................................................................................................................. 19 3 20 0.15 3 0 2 1 0 0
..................................................................................................................................................................................TTTGCTAAGAAATGGCTGC.............................................................................................................................................................. 19 2 7 0.14 1 1 0 0 0 0
...................................................................................................................................................................................................GCCGCATTACTTGGATAGT............................................................................................................................................. 19 3 20 0.10 2 0 0 1 1 0
.................................................................................GTGCTGCAGCTTCTAATGCGG............................................................................................................................................................................................................................................................. 21 3 13 0.08 1 0 0 1 0 0
......................................................................................................................................................................CAACTGATCGGATTTGGTAA......................................................................................................................................................................... 20 3 14 0.07 1 0 0 1 0 0
........................................................................................................TCGGATGCTGATGTTGATAAG...................................................................................................................................................................................................................................... 21 3 17 0.06 1 0 0 1 0 0
.....CATCCTAATGGAAAGGCATC.......................................................................................................................................................................................................................................................................................................................................... 20 3 19 0.05 1 0 1 0 0 0
...........................................................................................................GATGATGCTGTTCATGAGG..................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 1 0 0 0
..................................................................................................................................................AATGTGAGAATTTACTATGCC............................................................................................................................................................................................ 21 1 20 0.05 1 0 0 1 0 0
.......................................................................................................................................................................................................................ATGCGGGCTGCATCGACG.......................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0
...........................................................................................................................................................................................................................................GGCCGCATTGTTATAGGG...................................................................................................... 18 3 20 0.05 1 0 0 1 0 0
....................................................................................................................................................................................................................................................................................CGGGCGTCAGAATCAAAAC............................................................ 19 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

GGGTAGTAGTAGTACCTTTACGTAGAGTTAGTAACAACGGTACCCTTCACCACTTGCAAGGGCTACTGATACAACAACAACCGCGACGTCGGGGATTACGCCGGAGACTACTACTACAACTACTCCAAAAACCATAACCGTAACCACTACACTCTTAAATGATACGGTCGACCAGCCTAAACGATTGTTTACCGACCTCGTAACGAACCTATCACAACGACCGACGTAACTGCGTCCGGCGTAACAGTGTCCGGAGGTGCGTACACGAGTTATACTGCCCGTAGTCCTAATTTTGTAGCGATGTCCCAGATTAAATAGCGTTTTCAAACGATGACTTACGGTTATTATGACTACT
*************************************************************************************************************************************......(((((((.(((((.........))))))))))))((((((..(((((....)))))))))))((((.((((.....)))).))))..********************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
 V119
head
 M020
head
....................................................................................................................................................................................................................................................CAGTGACTGGAGGTGCGGAC........................................................................................... 20 3 5 23.60 118 74 40 1 0 3
....................................................................................................................................................................................................................................................CAGTGACTGGAGGTGCGGA............................................................................................ 19 3 15 21.33 320 220 73 20 6 1
.....................................................................................................................................................................................................................................................AGTGACTGGAGGTGCGGAC........................................................................................... 19 3 16 6.50 104 88 13 1 2 0
....................................................................................................................................................................................................................................................CAGTGTCTGGAGGTGCGGA............................................................................................ 19 2 2 0.50 1 0 1 0 0 0
......................................................................................................................................................................................................................................................GTGACTGGAGGTGCGTAC........................................................................................... 18 2 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................................................................................................AGCAGTGACCGGAGGTGCGTAC........................................................................................... 22 2 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................................................................................CAGTGACCGGAGGTGCGGAC........................................................................................... 20 2 2 0.50 1 0 1 0 0 0
...................................................................................................................................................................................................................................................GCAGTGACCGGAGGTGCGGAC........................................................................................... 21 3 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................AGTGACCGGAGGTGCGGACG.......................................................................................... 20 3 7 0.29 2 2 0 0 0 0
......................................................................................................................................................................................................CGTAACGAACCTATCAGAC.......................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0
...............................................................................................................................................................................................................................................CGTAGCAGTGACTGGAGGTGC............................................................................................... 21 3 4 0.25 1 1 0 0 0 0
...............................................................................................................................................................................................................................................CGAAGCAGTGACCGGAGGTGC............................................................................................... 21 3 4 0.25 1 0 0 1 0 0
..................................................................................................................................................................................................................................................AACAGTGACCGGAGGTGCG.............................................................................................. 19 1 5 0.20 1 0 1 0 0 0
......................................................................................................................................................................................................................................................GTGACTGGAGGTGCGGAC........................................................................................... 18 3 20 0.20 4 0 0 3 1 0
....................................................................................................................................................................................................................................................CAGTGACTGGAGGTGCGT............................................................................................. 18 2 5 0.20 1 0 0 0 1 0
..................................................................................................................................................................................................................................................AACAGTGACTGGAGGTGCGGA............................................................................................ 21 3 6 0.17 1 1 0 0 0 0
..................................................................................................................................................................................................................................................AGCAGTGACCGGAGGTGCG.............................................................................................. 19 2 6 0.17 1 0 1 0 0 0
.....................................................................................................................................................................................................................................................AGTGACTGGAGGTGCGTACG.......................................................................................... 20 3 6 0.17 1 1 0 0 0 0
....................................................................................................................................................................................................................................................CAGTGCCTGGAGGTGCGGA............................................................................................ 19 3 6 0.17 1 0 1 0 0 0
.....................................................................................................................................................................................................................................................AGTGACCGGAGGTGCGGA............................................................................................ 18 2 7 0.14 1 1 0 0 0 0
.............................................................................................................................................................................................................................................GGCGTAACAAGGTCCGTAGG.................................................................................................. 20 3 7 0.14 1 0 1 0 0 0
......................................................................................................................................................................................................................................................GTGACTGGAGGTGCGGACA.......................................................................................... 19 3 10 0.10 1 1 0 0 0 0
..................................................................................................................................................................................................................................................AGCAGTGGCTGGAGGTGCG.............................................................................................. 19 3 12 0.08 1 0 1 0 0 0
...............................................................................................................................................................................................................................................CGTAGCAGTGACTGGAGGTG................................................................................................ 20 3 12 0.08 1 1 0 0 0 0
...................................................................................................................................................................................................................................................GCAGTGACTGGAGGTGCGT............................................................................................. 19 3 13 0.08 1 1 0 0 0 0
......................................................................................................................................................................................................................................................GTGACCGGAGGTGCGGACG.......................................................................................... 19 3 14 0.07 1 0 1 0 0 0
.......................................................................................................................................................................................................................................................TGACCGGAGGTGCGTACGG......................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004945:235804-236158 - dwi_3555 C------CC--ATCATCATCATGGAAATGCATCTCAATCATTGTTGCCATGGGAAGTGGTGAACGTTCCCGATGACTATGTTGTTGTTGGC-------------------GCTG------------------------------------------------------------CAG------------------CCCCTAATGCGGCCTCTG------------------------------------------------------------------A---------TGATGATGTTGATGAGGTTTTTGGTATTGGCATTGGTGATGTGAGAATTTACTATGCCAGCTGGTCGGATTTGCTAACAAATGGCTGGAGCATTGCTTGGATAGTGTTGCTGGCTGCATTGACGCAGGCCGCATTGTCACAGGCCTCCACGCATGTGCTCAATATGACGGGCATCAGGATTAAAACATCGCTACAGGGTCTAATTTATCGCAAAAGTTTGCTACTGAATGCCAATAATA---C---------------------------------------TGATGA
droVir3 scaffold_12723:3669223-3669646 + C------AC---AGG----------------------------T----------------------------------------CG-------------AGGCACAGTCAGCTGCGGCAAATAGATCAATACTATT------GG---GA------------------GTTGGGTCTACGAGCAGCCCAATGTTGGGCACTAATGCGGCCACAGATAGTCCTGCTGATGTTGTTTACTATGATGATGTTGATGGTGGC---GATGATGGGCTTTTCA---AT---GT------------------------TGCTATTGGCATTGGCGATGTGAGAATTTACTATGCCAGATGGTCGGATTTGCTAACAAATGGCTGGAGCATTGCTTGGCTGGTGCTGGTGGCTGCATTGGCACAGGCCGCATTGTCGCAGGCCTCCACGCATGTGCTCAACATGACAGGGATCCGGATTAAAACATCGCTACAGGGTCTAATTTATCGCAAAAGTTTGCTTCTAAATGCCAGCAGTGGTTGTGGCAACAATGCCGCT---GATGTTGATGATGATGATGCTGATGA
droMoj3 scaffold_6500:15138309-15138717 - C------GC---AGG----------------------------T----------------------------------------TC-------------ATGCACAGGCAGCTACAGCAAATAGATCAATACCATTGGAAG------GA------------------GTTGGG---------------------GGGCCTAATGCGGCCGCAGATGGT---GCCGATGTTGATTACTACGAAGATTATGATGTTGCCAATGATGATGGGGCCTACA---AT------GATATGGGTTTGGGCATGGGCATGGGTATTGGCATTGGTGATGTGCGAATTTACTATGCCAGATGGTCGGATTTGCTAACAAATGGCTGGAGCATTGCTTGGCTGGTGTTATTGGCCGCATTGGCGCAGGCCGCATTGTCGCAGGCCTCCACGCATGTGCTCAACATGACGGGCATCAGGATTAAAACATCGCTACAGGGTCTAATTTATCGCAAAAGTTTGCTTCTAAATGCCAGCAGCGGTTGTGGCAACAATGCCGCT---G------------A------TGATGA
droGri2 scaffold_15252:3963052-3963420 - T------GC---AG-------------------------------------------------------------------------------------TT------------------AATGGATCAATACAATC------GG---GA------------------GTTGGGCCAAC-----GAGT-------GCCCCTAATGCGACCACAGA------------TGTTGTTTACTA-----------------------------------TGA---TGATGGTGATGATGGTGA-TGGTGGTGGTTTTGGTATTGGCATTGGCGATGTGAGAATTTACTATGCCAGATGGTCGGATTTGTTAACAAATGGCTGGAGCATTGCTTGGATGGTGCTTCTGGCTGCATTGGCACAGGCCGCATTGTCGCAGGCCTCCACGCATGTGCTCAATATGACGGGCATCAGGATTAAAACATCGCTACAAGGGCTAATTTATCGCAAAAGTTTACTTCTAAATGCCAGCAGCGGTTGTGCCAACAATGGCGCTTTTGATGTTAATGATGA------TGATGA
dp5 4_group3:13615-13886 + C------C---ATCAAAACAATGG------------------------------------------------------------------------------------------------------------------AATGCGAAAGA------------------CGAGGGTCAAC-----CACTAATGTTGGCC----------------------------------------T-----------------------------------TCA---AT---GTGAG---------------------CGACATTCATATTGGCCAAGTAAGAGTTTACTATGCCACCTGGTCGGAACTGCTAACAAACGGCTGGAGCATTGCTTGGATTGTTCTACTAGCTGCAATTACTCAGGGAGCCTTGTCCCAGGCTTCTACGCACATTCTTAATATGACGGGTATCTGGATAAAAACATCCCTACAGGGTCTAATTTATCGAAAGACCCTGCTATTAAATGC---------------------------------------------------------
droPer2 scaffold_1:1496902-1497173 + C------C---ATCAAAACAATGG------------------------------------------------------------------------------------------------------------------AATGCGAAAGA------------------CGAGGGTCAAC-----CACTAATGTTGGCC----------------------------------------T-----------------------------------TCA---AT---GTGAG---------------------CGATATTCATATTGGCCAAGTAAGAGTTTACTATGCCACCTGGTCGGAACTGCTAACAAACGGCTGGAGCATTGCTTGGATTGTTCTACTAGCTGCAATTACTCAGGGAGCCTTGTCCCAGGCTTCTACTCACATTCTTAATATGACGGGTATCTGGATAAAAACATCCCTACAGGGTCTAATTTATCGAAAGACCCTGCTATTAAATGC---------------------------------------------------------
droAna3 scaffold_12916:14023693-14024000 - A------CTACGATG----------------------------CC---CCACT------------------------------------------CGGT---------------------------C-----AA------TAAT---G------------------AACC-----------CGCCCAACTCACCAGC----------------------------------------A-----------------------------------CCACCGGT---GTAAGCAACGATTTTGATGAGGTTTTCGGCACCAATATTGGACAAGTGAGAATTTACTGTAGAACTTGGTCGGATCTGGTGGCGAATGGCTGGTGCATCGCTTGGATTGTTCTGCTGACCGCATTCACACAGGGCGCTTTGTCGCAGGCTTCGACGCACATCCTCAATATGACCGGCATCAGGATAAAAACTTCTCTACAGGGTCTAATTTATAGAAAAAGTTTGCTTTTAAATGCGGGCGGTGGA------------------------------------------GGCTG
droBip1 scf7180000396535:981972-982249 - T------CG----------------------------------------------------------------------------------------GT---------------------------C-----AA------TAAT---G------------------AGCC-----------CGCCCAACTTACCACC----------------------------------------A-----------------------------------CCTCCGGT---GTAAGCACAGATTTTGATGAGGTTTTCGGCACCAATATTGGCCAAGTGAGAATTTACTGTAGAACTTGGTCGGATCTGTTGGCGAATGGCTGGTGCATCGCTTGGCTGGTTCTGCTGACCGCGTTCACACAGGGCGCCTTGTCGCAGGCCTCGACGCACATCCTCAATATGACCGGCATCAGGATAAAAACATCCCTACGGGGTCTAATTTATAGAAAAAGTTTGCTTTTAAATGC---------------------------------------------------------
droKik1 scf7180000302408:951213-951526 + T------C---GCCG----------------------------CCGCCATGCC---------------------------------------------------CGAA------------------------CATCGGAGTCAGCAGGAGGGCGACTCCGACTCCAAGTC-----------CAGCCTGCTGTCCACC----------------------------------------T-----------------------------------CCA---GT---GTGAGCAACGAATTCGACGAGGTCTTCGGCACCAACATTGGCCAGGTGAGGGTTTACTGCAACACCTGGTCGGATCTGTTGGCGAATGGCTGGTGCATCGCTTGGATTGTCCTGCTGGCCGCGTTAACGCAGGGCGCATTGTCGCAGGCCTCTACGCACATCCTGAACATGACGGGGCTCCGGATTAAATCGTCCCTGCAGGGTCTGATTTATAGAAAAAGTTTGCTCCTAAAT-----------------------------------------------------------
droFic1 scf7180000453838:415223-415528 - CTTACA--------G----------------------------CC----------------------------------------GGAAGTTCA---GC----------------------------------G------TGGG---G------------------AGTC-----------CAATTTGTTGGCCAAC----------------------------------------T-----------------------------------CCA---GT---GTGAGCAGCGATTTTGATGAGGTCTTCGGCACCAATATTGGCCAAGTGAGGGTCTACTGTAGCACCTGGTCGGATCTTCTGGCGAATGGCTGGTGCATCGCCTGGATTGTCCTGCTGGCCGCCATCACACAGGGCGCTCTTTCGCAGGCCTCGACTCACATTCTCAACATGACTGGCATCAGGATAAAAACATCTCTACAGGGTCTAATTTATAGAAAAAGTTTGCTCCTAAATGCGGGCGGTGGGTG---------------------------------------TGATGA
droEle1 scf7180000491186:3264111-3264397 - C------C-----------------------------------------------------------------------------GGAAGTGCC---GTCGGAGGA----------------------------------GGAG---A------------------TGGC-----------CGGTCTTCTGTCCACC----------------------------------------T-----------------------------------CCA---AG---GTGAGCACCGAATTCGACGATGTCTTCGGCACCGACATCGGAACAGTGAGGGTGTACAGCAGCACATGGTCGGATCTGTTGGCCAATGGCTGGTGCATCGCCTGGATCGTCCTGCTGGCCGCAATCACACAGGGCGCCTTGTCGCAGGCCTCCACGCACATCCTCAATATGACCGGCATCAGGATTAAAACTTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTTCTAAATGC---------------------------------------------------------
droRho1 scf7180000780180:11550-11854 + T------C---GATG----------------------------CC----------------------------------------GGAAGTGTC---GCCGG----------------------------------------AG---G------------------AGTC-----------TGCTCTGCTGTCCTCG----------------------------------------T-----------------------------------CCA---AA---GTGGGCACCGAATTCGACGATGTTTTCGGGACCAATATCGGAACAGTGAGGATTTACAGCAGCACCTGGTCGGATCTCTTGGCAAATGGCTGGTGCATCGCCTGGATTGTCCTGCTGGCCGCAATGACACAAGGCGCCTTGTCGCAGGCCTCGACGCACATTCTCAACATGACCGGCATCAGGATTAAAACGTCCCTGCAGGGTCTAATTTATAGAAAAAGTTTGCTCCTAAATGCGGGTGGTGGGTG---------------------------------------TGATGA
droBia1 scf7180000301468:315463-315756 - TGTCAG--------C----------------------------C----------------------------------------CGGAGGAGCCGCCGCCGG----------------------------------------AG---G------------------AGAC-----------GGCTCTGCTGACCGCC----------------------------------------T-----------------------------------CCA---GGATCCTGGTCAACGAGTTCGACGAGGTCTTCGGCACCAACATCGATAGGGTGCGAATCTACAGCAGCACGTGGTCGGATCTCCTGGCCAATGGGTGGTGCATCGCCTGGATTGTCCTGCTGGCCGCCATCACGCAGGGCGCCCTGTCGCAGGCCTCGACGCACATCCTCAACATGACTGGCATCAGGATTAAGACGTCCCTGCAGGGTCTAATTTATAGGAAAAGTTTGCTTCTGAATGC---------------------------------------------------------
droTak1 scf7180000415667:291532-291821 + T------C---GATG----------------------------CC----------------------------------------------------GCAGGAGAA--------------------G-----AA------TGAG---G------------------AGAC-----------CGCCCTGCTGTCCACC----------------------------------------T-----------------------------------CCA---GAGTGCTGAGCACCGAATTCGACGAGGTCTTCGGCACCAATTTGGATAGAGTGCGAATCTACAGTAGCACCTGGTCGGATTTCCTGGCCAACGGATGGTGCATCGCCTGGATTGTCCTGCTGGCCGCCATCACACAAGGCGCCTTGTCGCAGGCCTCGACGCACATTCTCAACATGACCGGCATCAGGATTAAGACGTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTCCTGAATGC---------------------------------------------------------
droEug1 scf7180000409554:4730252-4730536 + G------CC----------------------------------------------------------------------------AAAAGAACC---GG----------------------------------A------CGAG---G------------------AGTC-----------CGTTCTACTGTCTACC----------------------------------------T-----------------------------------CCA---GAGTCCTAAGCACCGAATACGATGAAGTCTATGGCACAAATATCGATAGAGTGAGAATTTACAGTAGCACCTGGTCGGATCTTCTGGAGAATGGTTGGTGCATCGCCTGGATTGTCCTGTTGGCCGCAATCACACAAGGCGCCTTCTCGCAGGCCTCCACGCACATTCTCAACATGACTGGCATCAGGATTAAAACGTCTCTGCAGGGTCTAATTTATAGAAAAAGTTTGCTTCTAAATGC---------------------------------------------------------
dm3 chr2L:10195332-10195628 - G------CC----------------------------------------------------------------------------------------GCCGGCGAAGTCGCCTGG-----------C-----AA------TGAG---G------------------TGGC---CAA-----CGTTCTGCTATCCACC----------------------------------------T-----------------------------------CCC---GGATTCTGGGCACCGAATTCGACGAGGTTTTCGGCACGAACATCGATAAGGTGCGTATATATAGCAGCACCTGGTCAGATCTCCTGGCGAATGGATGGTGCATCGCTTGGATCGTTCTGCTGGCGGCCATTACACAAGGCGCCTTGTCCCAGGCTTCGACGCACATACTCAATATGACGGGCATCAGGATTAAAACGTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTTCTCAATGC---------------------------------------------------------
droSim2 2l:9872917-9873201 - G------CC----------------------------------------------------------------------------------------GCCGGAGAAGTCACCTGG-----------C--------------------------G---------------A-----------CGCTCTGCTGTCCACC----------------------------------------T-----------------------------------CCT---GGATTCTGGGCACCGAATTCGACGATGTCTTCGGCACGAACATCGATAAGGTGCGAATATATAGCAGCACCTGGTCGGATCTCCTGGCGAATGGATGGTGCATCGCCTGGATCGTCCTGCTGGCGGCCATCACACAAGGCGCCCTGTCCCAGGCATCGACGCACATACTCAACATGACGGGCATCAGGATTAAAACGTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTACTCAATGC---------------------------------------------------------
droSec2 scaffold_3:5620464-5620748 - G------CC----------------------------------------------------------------------------------------GCCGGAGAAGTCACCCGG-----------C--------------------------G---------------A-----------CGCTCTGCTGTCCACC----------------------------------------T-----------------------------------CCT---GGATTCTGGGCACCGAATTCGACGAGGTCTTCGGCACGAACATCGATAAGGTGCGAATATATAGCAGCACCTGGTCGGATCTCCTGGCGAATGGATGGTGCATCGCCTGGATCGTCCTGCTGGCGGCCATCACACAAGGCGCCCTGTCCCAGGCATCGACGCACATACTCAATATGACGGGCATCAGGATTAAGACGTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTACTCAATGC---------------------------------------------------------
droYak3 2L:12868470-12868769 - G------CC---AA-------------------------------------------------------------------------------------AGGA-----------------------C-----AA------TGAG---C------------------TGAC-----------CACTCTGTTGTCCACC----------------------------------------T-----------------------------------CCC---GCATCCTGGGCACCGAATTCGACGAGGTCTACGGCACCAACATCGATAGGGTGCGCATTTACAGCAGCACCTGGTCGGATCTGCTGGCGAATGGTTGGTGCATCGCCTGGATTGTCCTGCTGGCCGCCATCACACAAGGCGCCTTGTCCCAGGCCTCGACGCACATCCTCAACATGACGGGCATCAGGATTAAGACGTCCCTGCAGGGTCTAATTTATAGAAAAAGTTTGCTCCTCAATGCGGGCGGTGGCTC---------------------------------------CGATAG
droEre2 scaffold_4929:10800993-10801280 - TGCCGAGCC----------------------------------------------------------------------------AAA------------GGA-----------------------C-----GA------TGAG---G------------------TGAC-----------CGATCTGCTGTCCAAA----------------------------------------T-----------------------------------CCC---GACTCCTGGGCACCGAAATCGACGAGGTGTACGGCACCAACATCGATAAAGTGCGAATCTACAGCAGCACCTGGTCGGATCTACTGGCGAATGGATGGTGCATTGCCTGGATTGTCCTGCTGGCCGCCATCACTCAGGGCGCCCTGTCCCAGGCCTCGACGCACATCCTCAACATGACGGGCATCAGGATTAAAACGTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTCCTAAAGGC---------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
C------CC--ATCATCATCATGGAAATGCATCTCAATCATTGTTGCCATGGGAAGTGGTGAACGTTCCCGATGACTATGTTGTTGTTGGC-------------------GCTG------------------------------------------------------------CAG------------------CCCCTAATGCGGCCTCTG------------------------------------------------------------------A---------TGATGATGTTGATGAGGTTTTTGGTATTGGCATTGGTGATGTGAGAATTTACTATGCCAGCTGGTCGGATTTGCTAACAAATGGCTGGAGCATTGCTTGGATAGTGTTGCTGGCTGCATTGACGCAGGCCGCATTGTCACAGGCCTCCACGCATGTGCTCAATATGACGGGCATCAGGATTAAAACATCGCTACAGGGTCTAATTTATCGCAAAAGTTTGCTACTGAATGCCAATAATA---C---------------------------------------TGATGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................TTGGTATTGGCATTGGTGATGT......................................................................................................................................................................................................................................................2220.50100010
...............................................................................................................................................................................................................................................................................................................................................................................................GCTTGGATAGTGTTGCTGG...............................................................................................................................................................................1920.50100100
...............................................................................................................................................................................................................................................................................................................................................ATTTACTATGCCAGCTGGTCG.............................................................................................................................................................................................................................2120.50100010
................................................ATGGGAAGTGGTGAACGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100001
.....................................................................................................................................................................................................................................................................................................GATGTTGATGAGGTTTTTGGTATTGGC.................................................................................................................................................................................................................................................................2720.50100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCTACAGGGTCTAATTTAT................................................................................2220.50100010
droVir3
C------AC---AGG----------------------------T----------------------------------------CG-------------AGGCACAGTCAGCTGCGGCAAATAGATCAATACTATT------GG---GA------------------GTTGGGTCTACGAGCAGCCCAATGTTGGGCACTAATGCGGCCACAGATAGTCCTGCTGATGTTGTTTACTATGATGATGTTGATGGTGGC---GATGATGGGCTTTTCA---AT---GT------------------------TGCTATTGGCATTGGCGATGTGAGAATTTACTATGCCAGATGGTCGGATTTGCTAACAAATGGCTGGAGCATTGCTTGGCTGGTGCTGGTGGCTGCATTGGCACAGGCCGCATTGTCGCAGGCCTCCACGCATGTGCTCAACATGACAGGGATCCGGATTAAAACATCGCTACAGGGTCTAATTTATCGCAAAAGTTTGCTTCTAAATGCCAGCAGTGGTTGTGGCAACAATGCCGCT---GATGTTGATGATGATGATGCTGATGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATGACAGGGATCCGGAT............................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TACTATGCCAGATGGTCGGA...........................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGATCCGGATTAAAAC......................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATGACAGGGATCCGGATTAAAA.......................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................GTTGATGGTGGC---GATGATGGGCTTT................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCCGCT---GATGTTGATG................2011.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGATGATGATGCTGATG.2221.002000000001000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGATGATGCTGATG.19200.153000000300000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGATGATGCTGATGA21180.061000000000000000000000010000000000000000000000000000000000000000
droMoj3
C------GC---AGG----------------------------T----------------------------------------TC-------------ATGCACAGGCAGCTACAGCAAATAGATCAATACCATTGGAAG------GA------------------GTTGGG---------------------GGGCCTAATGCGGCCGCAGATGGT---GCCGATGTTGATTACTACGAAGATTATGATGTTGCCAATGATGATGGGGCCTACA---AT------GATATGGGTTTGGGCATGGGCATGGGTATTGGCATTGGTGATGTGCGAATTTACTATGCCAGATGGTCGGATTTGCTAACAAATGGCTGGAGCATTGCTTGGCTGGTGTTATTGGCCGCATTGGCGCAGGCCGCATTGTCGCAGGCCTCCACGCATGTGCTCAACATGACGGGCATCAGGATTAAAACATCGCTACAGGGTCTAATTTATCGCAAAAGTTTGCTTCTAAATGCCAGCAGCGGTTGTGGCAACAATGCCGCT---G------------A------TGATGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................GCATTGCTTGGCTGGTGTTATTGGCCGC...........................................................................................................................................................................2811.001100000
................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGGAGCATTGCTTGG............................................................................................................................................................................................2111.001000001
...................................................................................................................................................................................................................................................................................................TGGGTTTGGGCATGGGCAT...........................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................CTACGAAGATTATGATGTT...................................................................................................................................................................................................................................................................................................................................1911.001000001
droGri2
T------GC---AG-------------------------------------------------------------------------------------TT------------------AATGGATCAATACAATC------GG---GA------------------GTTGGGCCAAC-----GAGT-------GCCCCTAATGCGACCACAGA------------TGTTGTTTACTA-----------------------------------TGA---TGATGGTGATGATGGTGA-TGGTGGTGGTTTTGGTATTGGCATTGGCGATGTGAGAATTTACTATGCCAGATGGTCGGATTTGTTAACAAATGGCTGGAGCATTGCTTGGATGGTGCTTCTGGCTGCATTGGCACAGGCCGCATTGTCGCAGGCCTCCACGCATGTGCTCAATATGACGGGCATCAGGATTAAAACATCGCTACAAGGGCTAATTTATCGCAAAAGTTTACTTCTAAATGCCAGCAGCGGTTGTGCCAACAATGGCGCTTTTGATGTTAATGATGA------TGATGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
C------C---ATCAAAACAATGG------------------------------------------------------------------------------------------------------------------AATGCGAAAGA------------------CGAGGGTCAAC-----CACTAATGTTGGCC----------------------------------------T-----------------------------------TCA---AT---GTGAG---------------------CGACATTCATATTGGCCAAGTAAGAGTTTACTATGCCACCTGGTCGGAACTGCTAACAAACGGCTGGAGCATTGCTTGGATTGTTCTACTAGCTGCAATTACTCAGGGAGCCTTGTCCCAGGCTTCTACGCACATTCTTAATATGACGGGTATCTGGATAAAAACATCCCTACAGGGTCTAATTTATCGAAAGACCCTGCTATTAAATGC---------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................TCAAC-----CACTAATGTTGGCC----------------------------------------T-----------------------------------TCA---AT---G....................................................................................................................................................................................................................................................................................................2613.0030000000300
..................................................................................................................................................................................................................................................................................................................................................................CGGAACTGCTAACAAACGGCTGGAG......................................................................................................................................................................................................2511.0010100000000
.................................................................................................................................................AAGA------------------CGAGGGTCAAC-----CACTAA....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGATAAAAACATCCCTACAG............................................................................................2511.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................CACCTGGTCGGAACTGCTAACAAACG.............................................................................................................................................................................................................2611.0010000001000
...........ATCAAAACAATGG------------------------------------------------------------------------------------------------------------------AATGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
C------C---ATCAAAACAATGG------------------------------------------------------------------------------------------------------------------AATGCGAAAGA------------------CGAGGGTCAAC-----CACTAATGTTGGCC----------------------------------------T-----------------------------------TCA---AT---GTGAG---------------------CGATATTCATATTGGCCAAGTAAGAGTTTACTATGCCACCTGGTCGGAACTGCTAACAAACGGCTGGAGCATTGCTTGGATTGTTCTACTAGCTGCAATTACTCAGGGAGCCTTGTCCCAGGCTTCTACTCACATTCTTAATATGACGGGTATCTGGATAAAAACATCCCTACAGGGTCTAATTTATCGAAAGACCCTGCTATTAAATGC---------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................GTTCTACTAGCTGCAATTACTCAGGGG..............................................................................................................................................................2711.001100000
droAna3
A------CTACGATG----------------------------CC---CCACT------------------------------------------CGGT---------------------------C-----AA------TAAT---G------------------AACC-----------CGCCCAACTCACCAGC----------------------------------------A-----------------------------------CCACCGGT---GTAAGCAACGATTTTGATGAGGTTTTCGGCACCAATATTGGACAAGTGAGAATTTACTGTAGAACTTGGTCGGATCTGGTGGCGAATGGCTGGTGCATCGCTTGGATTGTTCTGCTGACCGCATTCACACAGGGCGCTTTGTCGCAGGCTTCGACGCACATCCTCAATATGACCGGCATCAGGATAAAAACTTCTCTACAGGGTCTAATTTATAGAAAAAGTTTGCTTTTAAATGCGGGCGGTGGA------------------------------------------GGCTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................CACACAGGGCGCTTTGTCGCAGG.................................................................................................................................................2311.001000001
droBip1
T------CG----------------------------------------------------------------------------------------GT---------------------------C-----AA------TAAT---G------------------AGCC-----------CGCCCAACTTACCACC----------------------------------------A-----------------------------------CCTCCGGT---GTAAGCACAGATTTTGATGAGGTTTTCGGCACCAATATTGGCCAAGTGAGAATTTACTGTAGAACTTGGTCGGATCTGTTGGCGAATGGCTGGTGCATCGCTTGGCTGGTTCTGCTGACCGCGTTCACACAGGGCGCCTTGTCGCAGGCCTCGACGCACATCCTCAATATGACCGGCATCAGGATAAAAACATCCCTACGGGGTCTAATTTATAGAAAAAGTTTGCTTTTAAATGC---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
T------C---GCCG----------------------------CCGCCATGCC---------------------------------------------------CGAA------------------------CATCGGAGTCAGCAGGAGGGCGACTCCGACTCCAAGTC-----------CAGCCTGCTGTCCACC----------------------------------------T-----------------------------------CCA---GT---GTGAGCAACGAATTCGACGAGGTCTTCGGCACCAACATTGGCCAGGTGAGGGTTTACTGCAACACCTGGTCGGATCTGTTGGCGAATGGCTGGTGCATCGCTTGGATTGTCCTGCTGGCCGCGTTAACGCAGGGCGCATTGTCGCAGGCCTCTACGCACATCCTGAACATGACGGGGCTCCGGATTAAATCGTCCCTGCAGGGTCTGATTTATAGAAAAAGTTTGCTCCTAAAT-----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTTACA--------G----------------------------CC----------------------------------------GGAAGTTCA---GC----------------------------------G------TGGG---G------------------AGTC-----------CAATTTGTTGGCCAAC----------------------------------------T-----------------------------------CCA---GT---GTGAGCAGCGATTTTGATGAGGTCTTCGGCACCAATATTGGCCAAGTGAGGGTCTACTGTAGCACCTGGTCGGATCTTCTGGCGAATGGCTGGTGCATCGCCTGGATTGTCCTGCTGGCCGCCATCACACAGGGCGCTCTTTCGCAGGCCTCGACTCACATTCTCAACATGACTGGCATCAGGATAAAAACATCTCTACAGGGTCTAATTTATAGAAAAAGTTTGCTCCTAAATGCGGGCGGTGGGTG---------------------------------------TGATGASizeHit CountTotal NormTotal
No Reads
droEle1
C------C-----------------------------------------------------------------------------GGAAGTGCC---GTCGGAGGA----------------------------------GGAG---A------------------TGGC-----------CGGTCTTCTGTCCACC----------------------------------------T-----------------------------------CCA---AG---GTGAGCACCGAATTCGACGATGTCTTCGGCACCGACATCGGAACAGTGAGGGTGTACAGCAGCACATGGTCGGATCTGTTGGCCAATGGCTGGTGCATCGCCTGGATCGTCCTGCTGGCCGCAATCACACAGGGCGCCTTGTCGCAGGCCTCCACGCACATCCTCAATATGACCGGCATCAGGATTAAAACTTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTTCTAAATGC---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
T------C---GATG----------------------------CC----------------------------------------GGAAGTGTC---GCCGG----------------------------------------AG---G------------------AGTC-----------TGCTCTGCTGTCCTCG----------------------------------------T-----------------------------------CCA---AA---GTGGGCACCGAATTCGACGATGTTTTCGGGACCAATATCGGAACAGTGAGGATTTACAGCAGCACCTGGTCGGATCTCTTGGCAAATGGCTGGTGCATCGCCTGGATTGTCCTGCTGGCCGCAATGACACAAGGCGCCTTGTCGCAGGCCTCGACGCACATTCTCAACATGACCGGCATCAGGATTAAAACGTCCCTGCAGGGTCTAATTTATAGAAAAAGTTTGCTCCTAAATGCGGGTGGTGGGTG---------------------------------------TGATGASizeHit CountTotal NormTotal
No Reads
droBia1
TGTCAG--------C----------------------------C----------------------------------------CGGAGGAGCCGCCGCCGG----------------------------------------AG---G------------------AGAC-----------GGCTCTGCTGACCGCC----------------------------------------T-----------------------------------CCA---GGATCCTGGTCAACGAGTTCGACGAGGTCTTCGGCACCAACATCGATAGGGTGCGAATCTACAGCAGCACGTGGTCGGATCTCCTGGCCAATGGGTGGTGCATCGCCTGGATTGTCCTGCTGGCCGCCATCACGCAGGGCGCCCTGTCGCAGGCCTCGACGCACATCCTCAACATGACTGGCATCAGGATTAAGACGTCCCTGCAGGGTCTAATTTATAGGAAAAGTTTGCTTCTGAATGC---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
T------C---GATG----------------------------CC----------------------------------------------------GCAGGAGAA--------------------G-----AA------TGAG---G------------------AGAC-----------CGCCCTGCTGTCCACC----------------------------------------T-----------------------------------CCA---GAGTGCTGAGCACCGAATTCGACGAGGTCTTCGGCACCAATTTGGATAGAGTGCGAATCTACAGTAGCACCTGGTCGGATTTCCTGGCCAACGGATGGTGCATCGCCTGGATTGTCCTGCTGGCCGCCATCACACAAGGCGCCTTGTCGCAGGCCTCGACGCACATTCTCAACATGACCGGCATCAGGATTAAGACGTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTCCTGAATGC---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
G------CC----------------------------------------------------------------------------AAAAGAACC---GG----------------------------------A------CGAG---G------------------AGTC-----------CGTTCTACTGTCTACC----------------------------------------T-----------------------------------CCA---GAGTCCTAAGCACCGAATACGATGAAGTCTATGGCACAAATATCGATAGAGTGAGAATTTACAGTAGCACCTGGTCGGATCTTCTGGAGAATGGTTGGTGCATCGCCTGGATTGTCCTGTTGGCCGCAATCACACAAGGCGCCTTCTCGCAGGCCTCCACGCACATTCTCAACATGACTGGCATCAGGATTAAAACGTCTCTGCAGGGTCTAATTTATAGAAAAAGTTTGCTTCTAAATGC---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
G------CC----------------------------------------------------------------------------------------GCCGGCGAAGTCGCCTGG-----------C-----AA------TGAG---G------------------TGGC---CAA-----CGTTCTGCTATCCACC----------------------------------------T-----------------------------------CCC---GGATTCTGGGCACCGAATTCGACGAGGTTTTCGGCACGAACATCGATAAGGTGCGTATATATAGCAGCACCTGGTCAGATCTCCTGGCGAATGGATGGTGCATCGCTTGGATCGTTCTGCTGGCGGCCATTACACAAGGCGCCTTGTCCCAGGCTTCGACGCACATACTCAATATGACGGGCATCAGGATTAAAACGTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTTCTCAATGC---------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................TGGTGCATCGCTTGGATCGTTCTGC..................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACGGGCATCAGGATTAAAACGT....................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTCGGCACGAACATCGATAAGGTGCG...................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCATCGCTTGGATCGTTCTGCTGGCG.............................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
................................................................................................................................................................................................................................................................................................................................................................................AATGGATGGTGCATC..................................................................................................................................................................................................1512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATTAAAACGTCCCTACAGGGT.........................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
...........................................................................................................................................................................................................................................................................................TCTGGGCACCGAATTCGACGAGGTT.............................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CCGGCGAAGTCGCCTGG-----------C-----AA------TGAG---G------------------TGGC---C...................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................GG-----------C-----AA------TGAG---G------------------TGGC---CAA-----CGTT........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TCAGATCTCCTGGCGAATGGATGGTGC.....................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTAAAACGTCCCTACAGGGTCT.......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGGCTTCGACGCACATACTCAAT.............................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATTAAAACGTCCCTACAGGGTC........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................T-----------------------------------CCC---GGATTCTGGGCACCGAATTCGAC...................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCCCAGGCTTCGACGCACATACT.................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................ATTCTGGGCACCGAATTCGACGAGG...............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................GCTTGGATCGTTCTGCTGGCGGC...........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACGCACATACTCAATATGACGGG.....................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATTACACAAGGCGCCTTGTCCCA...................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACGTCCCTACAGGGTCTAA.....................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TGGTGCATCGCTTGGATCGTTCTGCT.................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CACC----------------------------------------T-----------------------------------CCC---GGATTCTGGGCACCGAA.........................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CACAAGGCGCCTTGTCCCAGGCTTC.............................................................................................................................................2511.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTCAATATGACGGGC....................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGGCTTCGACGCACATACTCAATAA...........................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCAATATGACGGGCATCAGGAT............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCATCGCTTGGATCGTTCTGCTGGC..............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACGTCCCTACAGGGTCTAATTTA.................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................TTCTGGGCACCGAATTCGACGAGGT..............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCCAGGCTTCGACGCACATACT.................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACGGGCATCAGGATTAAAACG.....................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TATATATAGCAGCACCTGGTCAGATC.........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................ATAGCAGCACCTGGTCAGATCTCCTGGC..................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................TGCTATCCACC----------------------------------------T-----------------------------------CCC---GGATTCTGGGCA..............................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
G------CC----------------------------------------------------------------------------------------GCCGGAGAAGTCACCTGG-----------C--------------------------G---------------A-----------CGCTCTGCTGTCCACC----------------------------------------T-----------------------------------CCT---GGATTCTGGGCACCGAATTCGACGATGTCTTCGGCACGAACATCGATAAGGTGCGAATATATAGCAGCACCTGGTCGGATCTCCTGGCGAATGGATGGTGCATCGCCTGGATCGTCCTGCTGGCGGCCATCACACAAGGCGCCCTGTCCCAGGCATCGACGCACATACTCAACATGACGGGCATCAGGATTAAAACGTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTACTCAATGC---------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
G------CC----------------------------------------------------------------------------------------GCCGGAGAAGTCACCCGG-----------C--------------------------G---------------A-----------CGCTCTGCTGTCCACC----------------------------------------T-----------------------------------CCT---GGATTCTGGGCACCGAATTCGACGAGGTCTTCGGCACGAACATCGATAAGGTGCGAATATATAGCAGCACCTGGTCGGATCTCCTGGCGAATGGATGGTGCATCGCCTGGATCGTCCTGCTGGCGGCCATCACACAAGGCGCCCTGTCCCAGGCATCGACGCACATACTCAATATGACGGGCATCAGGATTAAGACGTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTACTCAATGC---------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................CTGGATCGTCCTGCTGGCGGCC..........................................................................................................................................................................2211.0010010
droYak3
G------CC---AA-------------------------------------------------------------------------------------AGGA-----------------------C-----AA------TGAG---C------------------TGAC-----------CACTCTGTTGTCCACC----------------------------------------T-----------------------------------CCC---GCATCCTGGGCACCGAATTCGACGAGGTCTACGGCACCAACATCGATAGGGTGCGCATTTACAGCAGCACCTGGTCGGATCTGCTGGCGAATGGTTGGTGCATCGCCTGGATTGTCCTGCTGGCCGCCATCACACAAGGCGCCTTGTCCCAGGCCTCGACGCACATCCTCAACATGACGGGCATCAGGATTAAGACGTCCCTGCAGGGTCTAATTTATAGAAAAAGTTTGCTCCTCAATGCGGGCGGTGGCTC---------------------------------------CGATAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCAACATGACGGGCATCAGGATTAAGAC......................................................................................................3111.00100000000001
droEre2
TGCCGAGCC----------------------------------------------------------------------------AAA------------GGA-----------------------C-----GA------TGAG---G------------------TGAC-----------CGATCTGCTGTCCAAA----------------------------------------T-----------------------------------CCC---GACTCCTGGGCACCGAAATCGACGAGGTGTACGGCACCAACATCGATAAAGTGCGAATCTACAGCAGCACCTGGTCGGATCTACTGGCGAATGGATGGTGCATTGCCTGGATTGTCCTGCTGGCCGCCATCACTCAGGGCGCCCTGTCCCAGGCCTCGACGCACATCCTCAACATGACGGGCATCAGGATTAAAACGTCCCTACAGGGTCTAATTTATAGAAAAAGTTTGCTCCTAAAGGC---------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................GA-----------------------C-----GA------TGAG---G------------------TGAC-----------CGATC.......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.............................................................................................................................................GAG---G------------------TGAC-----------CGATCTGCTGTC................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATCCTCAACATGACGGG.....................................................................................................................2111.0011000000

Generated: 05/18/2015 at 07:27 AM