ID:

dwi_354

 Coordinate:

scf2_1100000004397:2922-3072 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.4 -14.8 -14.8

Flybase annnotation

exon [dwil_GLEANR_18937:3]; CDS [Dwil\GK18523-cds]; intron [Dwil\GK18523-in]

Repeatable elements

NameClassFamilyStrand
Transib5DNACMC-Transib+
mature
  1. scf2_1100000005962:123-146 +
  2. scf2_1100000003669:5505-5528 -
  3. scf2_1100000014328:41-64 -
  4. dwi_354  scf2_1100000004397:3004-3027 -
  5. scf2_1100000004605:18648-18671 -
  6. scf2_1100000004620:98774-98797 -
  7. scf2_1100000004947:1125653-1125676 +
  8. scf2_1100000004953:578958-578981 -
star
  1. scf2_1100000003669:5428-5453 -
  2. dwi_354  scf2_1100000004397:2927-2952 -
  3. scf2_1100000004620:98697-98722 -
  4. scf2_1100000004947:1125728-1125753 +
  5. scf2_1100000004953:578881-578906 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGCAATGACAAAGAACATACAAAGCTCAGACGGGCTGCAAAAATGTACACAAGTTCATTCTTTCAATGCTATTTTTAGAAAGTTCCGTTAGATTTGCGGAAAACCCGGTTTGGCGTTTTGAAGATTGAACATTTTAGTGTCAATTTGTGTTCGTTTTGTCCAAGTATTTTGTGATGATATTTTTGATTTTTGGCCTATAGACGCAACCAGTGTGCAACGTCGCAAGGCCCTTTGCGCCGATCTACGGCAA
***********************************************************************************************.((.(((((...((...((((......(((((((.(((....)))))))))).....))))....))(((((((.......)))))))....))))).)).******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
....................................................................................................................................................................................................................GTAACACGTCGCAAGGCCCT................... 20 3 4 3.25 13 10 0 3
...............................................................................................TGCGGAAAACCCGGTTTGGCGTTT.................................................................................................................................... 24 0 8 1.38 11 1 10 0
.........................................................................................TAGATTTGCGGAAAACCCGGTTTGGCG....................................................................................................................................... 27 0 8 1.13 9 9 0 0
.........................................................................................TAGATTTGCGGAAAACCCGGTTTGG......................................................................................................................................... 25 0 8 1.13 9 9 0 0
..............................................................................................TTGCGGAAAACCCGGTTTGGCGTTT.................................................................................................................................... 25 0 8 0.75 6 0 6 0
.......................................................................................................................TGAAGATTGAACATTTTAGTGTCAAT.......................................................................................................... 26 0 7 0.43 3 2 1 0
..........................................................................................................................................................................TGTGATGATATTTTTGATTTTTGGCC....................................................... 26 0 5 0.40 2 1 1 0
...............................................................................................TGCGGAAAACCCGGTTTGGCGTTTT................................................................................................................................... 25 0 8 0.38 3 1 2 0
.............................................................TTTCAATGCTATTTTTAGAAAGTTCCGT.................................................................................................................................................................. 28 0 8 0.38 3 3 0 0
.......................................................................................................................................TAGTGTCAATTTGTGTTCGTTTTG............................................................................................ 24 0 7 0.29 2 1 1 0
............................................TGTACACAAGTTCATTCTTTCAATGC..................................................................................................................................................................................... 26 0 8 0.25 2 2 0 0
................................................................CAATGCTATTTTTAGAAAGTTCCGT.................................................................................................................................................................. 25 0 8 0.25 2 2 0 0
.........................................................................................TAGATTTGCGGAAAACCCGGTTTGGCGT...................................................................................................................................... 28 0 8 0.25 2 2 0 0
..............................................................................................TTGCGGAAAACCCGGTTTGGCGTTTT................................................................................................................................... 26 0 8 0.25 2 1 0 1
..............................................................................................TTGCGGAAAACCCGGTTTGGCGTT..................................................................................................................................... 24 0 8 0.25 2 1 1 0
.........................................................................................TAGATTTGCGGAAAACCCGGTTTGGC........................................................................................................................................ 26 0 8 0.25 2 1 1 0
............................................................................................................................................................................TGATGATATTTTTGATTTTTGGCCTA..................................................... 26 0 5 0.20 1 0 1 0
.....................................................................................................................................................................TATTTTGTGATGATATTTTTGATT.............................................................. 24 0 5 0.20 1 0 1 0
.......................................................................................................................................TAGTGTCAATTTGTGTTCGTTTTGTC.......................................................................................... 26 0 6 0.17 1 0 0 1
.......................................................................................................................................TAGTGTCAATTTGTGTTCGT................................................................................................ 20 0 7 0.14 1 0 1 0
.....................................................................................................................TTTGAAGATTGAACATTTTAGTGTCAAT.......................................................................................................... 28 0 7 0.14 1 0 1 0
..................TACAAAGCTCAGACGGGCTGCAAAAATG............................................................................................................................................................................................................. 28 0 7 0.14 1 0 1 0
....................................................................................................................................TTTTAGTGTCAATTTGTTTTCGTTT.............................................................................................. 25 1 7 0.14 1 0 1 0
...................ACAAAGCTCAGACGGGCTGCAAAAATG............................................................................................................................................................................................................. 27 0 7 0.14 1 1 0 0
.................................................................................................................................................TTGTGTTCGTTTTGTCCAAGTATTTTG............................................................................... 27 0 7 0.14 1 1 0 0
..........................................................................................................................................TGTCAATTTGTGTTCGTTT.............................................................................................. 19 0 7 0.14 1 0 1 0
..................................................................................................................................................TGTGTTCGTTTTGTCCAAGTATTTTG............................................................................... 26 0 7 0.14 1 1 0 0
.......................................................................................................................TGAAGATTGAACATTTTAGTGTCAATT......................................................................................................... 27 0 7 0.14 1 0 1 0
..........................................................................................AGATTTGCGGAAAACCCGGTTTGG......................................................................................................................................... 24 0 8 0.13 1 1 0 0
......................................................................................CGTTAGATTTGCGGAAAACCCGGT............................................................................................................................................. 24 0 8 0.13 1 0 1 0
.....................................................................CTATTTTTAGAAAGTTCCGT.................................................................................................................................................................. 20 0 8 0.13 1 1 0 0
...................................................................TGCTATTTTTAGAAAGTTCCGTTAG............................................................................................................................................................... 25 0 8 0.13 1 1 0 0
...........................................................................TTAGAAAGTTCCGTTAGATTTGCGGA...................................................................................................................................................... 26 0 8 0.13 1 0 1 0
..........................................................................................AGATTTGCGGAAAACCCGGTTTGGCG....................................................................................................................................... 26 0 8 0.13 1 1 0 0
...................................................................TGCTATTTTTAGAAAGTTCCGTTAGAT............................................................................................................................................................. 27 0 8 0.13 1 1 0 0
.........................................................................................TAGATTTGCGGAAAACCCGGTTTGGCT....................................................................................................................................... 27 1 8 0.13 1 1 0 0
........................................................................................TTAGATTTGCGGAAAACCCGGTTTGGCG....................................................................................................................................... 28 0 8 0.13 1 1 0 0
.............................................................TTTCAATGCCATTTTTAGAAAGTTCCGT.................................................................................................................................................................. 28 1 8 0.13 1 1 0 0
......................................................................TATTTTTAGAAAGTTCCGTA................................................................................................................................................................. 20 1 8 0.13 1 1 0 0
.........................................................................................TAGATTTGCGGAAAACCCGGTTTGGTTT...................................................................................................................................... 28 2 8 0.13 1 0 1 0
...............................................................TCAATGCTATTTTTAGAAAGTTCCGT.................................................................................................................................................................. 26 0 8 0.13 1 1 0 0
......................................................................................................AACCCGGTTTGGCGTTTTGAAGATTG........................................................................................................................... 26 0 8 0.13 1 1 0 0
...................................................................................TTCCGTTAGATTTGCGGAAAACCCGGTT............................................................................................................................................ 28 0 8 0.13 1 1 0 0
...............................................................................................TGCGGAAAACCCGGTTTGACGTTT.................................................................................................................................... 24 1 8 0.13 1 0 1 0
..............................................................................................TTGAGGAAAACCCGGTTTGGCGTTT.................................................................................................................................... 25 1 8 0.13 1 0 1 0
............................................................................TAGAAAGTTCCGTTAGATTTGCGGA...................................................................................................................................................... 25 0 8 0.13 1 0 1 0
.............................................................TTTCAATGCTAATTTTAGAAAGTTCCGT.................................................................................................................................................................. 28 1 8 0.13 1 1 0 0
.............................................................................................TTTGCGGAAAACCCGGTTTGGCGTTT.................................................................................................................................... 26 0 8 0.13 1 0 1 0
...........................................................................................GATTTGCGGAAAACCCGGTTTGGCG....................................................................................................................................... 25 0 8 0.13 1 1 0 0
...................................................................TGCTATTTTTAGAAAGTTCCGT.................................................................................................................................................................. 22 0 8 0.13 1 1 0 0
...................................................................TGCTATTTTTAGAAAGTTCCGTTAGATT............................................................................................................................................................ 28 0 8 0.13 1 1 0 0
..............................................TACACAAGTTCATTCTTTCAATGCTAT.................................................................................................................................................................................. 27 0 8 0.13 1 0 1 0
....................................TGCAAAAATGTACACAAGTTCATTCTTTT.......................................................................................................................................................................................... 29 1 8 0.13 1 1 0 0
...............................................................................................TGCGGAAAACCCGGTTTGGCGTTTTG.................................................................................................................................. 26 0 8 0.13 1 1 0 0
.................................................................................AGTTCCGTTAGATTTGCG........................................................................................................................................................ 18 0 9 0.11 1 1 0 0
..............................................................................................................TTGGCGTTTTGAAGATTGAACATTT.................................................................................................................... 25 0 9 0.11 1 0 1 0
.....................................................................................................................TTTGAAGATTGAACATTTTAGTGTCA............................................................................................................ 26 0 9 0.11 1 1 0 0
...............................................................................................................TGGCGTTTTGAAGATTGAACATTT.................................................................................................................... 24 0 9 0.11 1 0 1 0
........................................................................................................................................................................................................................CACGTCGCAAGGCCCTCC................. 18 3 20 0.10 2 2 0 0
...................................................................................................................................................................................................................................GCCCTTTGCGCCGATCTACGGCAA 24 0 11 0.09 1 1 0 0
.........................................................................................................................................................................................................................ACGTCGCCAGGCCCTTTGCGC............. 21 1 13 0.08 1 1 0 0
.......................................................................................................................TGATGACTGAACATTTGAGT................................................................................................................ 20 3 20 0.05 1 1 0 0
........................................................................................................................GTAGACTGAACATTTGAGT................................................................................................................ 19 3 20 0.05 1 0 0 1

Anti-sense strand reads

AACGTTACTGTTTCTTGTATGTTTCGAGTCTGCCCGACGTTTTTACATGTGTTCAAGTAAGAAAGTTACGATAAAAATCTTTCAAGGCAATCTAAACGCCTTTTGGGCCAAACCGCAAAACTTCTAACTTGTAAAATCACAGTTAAACACAAGCAAAACAGGTTCATAAAACACTACTATAAAAACTAAAAACCGGATATCTGCGTTGGTCACACGTTGCAGCGTTCCGGGAAACGCGGCTAGATGCCGTT
*******************************************************.((.(((((...((...((((......(((((((.(((....)))))))))).....))))....))(((((((.......)))))))....))))).)).*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
...................................................................................................................................................................................................................................CGGGAAACGCGGCTAGATGCCGT. 23 0 11 1.09 12 3 9
...............................................................................................................................................................................................................................TTTCCGGGAAACGCGGCTAGATGCCGT. 27 1 1 1.00 1 0 1
.................................................................................................................................................................................................................................TCCGGGAAACGCGGCTAGATGCCGT. 25 0 11 0.45 5 3 2
....................................................................................................................................................................................................................................GGGAAACGCGGCTAGATGCCGT. 22 0 11 0.27 3 1 2
.......................................................................................................TGGGCCAAACCGCAAAACTTCTAA............................................................................................................................ 24 0 8 0.25 2 2 0
................................................GTGTTCAAGTAAGAAAGTTACGAT................................................................................................................................................................................... 24 0 8 0.25 2 2 0
..........................................TTACATGTGTTCAAGTAAGAAAGT......................................................................................................................................................................................... 24 0 8 0.25 2 0 2
..........................................................................................................................................ACAGTTAAACACAAGCAAAACAGGTTCAT.................................................................................... 29 0 5 0.20 1 1 0
.............................................................................................................................................GTTAAACACAAGCAAAACAGGTTCAT.................................................................................... 26 0 5 0.20 1 1 0
...........................................................................................................................................................AAACAGGTTCATAAAACACTACTAT....................................................................... 25 0 5 0.20 1 1 0
..........................................................................................................................................................AAAACAGGTTCATAAAACACTACTAT....................................................................... 26 0 5 0.20 1 1 0
....................................................................................................................................................ACAAGCAAAACAGGTTCATAAAACACT............................................................................ 27 0 6 0.17 1 0 1
..................................................................................................................................GTAAAATCACAGTTAAACACAAGCAA............................................................................................... 26 0 7 0.14 1 1 0
.................................................................................................................................TGTAAAATCACAGTTAAACACAAGC................................................................................................. 25 0 7 0.14 1 1 0
......................TTCGAGTCTGCCCGACGTTTTTACAT........................................................................................................................................................................................................... 26 0 7 0.14 1 1 0
..................ATGTTTCGAGTCTGCCCGACGTTTT................................................................................................................................................................................................................ 25 0 7 0.14 1 1 0
........................................................................................................GGGCCAAACCGCAAAACTTCTAACT.......................................................................................................................... 25 0 8 0.13 1 1 0
...........................................TACATGTGTTCAAGTAAGAAAGTTACGA.................................................................................................................................................................................... 28 0 8 0.13 1 1 0
..............................................ATGTGTTCAAGTAAGAAAGTTACGAT................................................................................................................................................................................... 26 0 8 0.13 1 1 0
...........................GTCTGCCCGACGTTTTTACATGTGT....................................................................................................................................................................................................... 25 0 8 0.13 1 0 1
..........................................................................AAATCTTTCAAGGCAATCTAAACGC........................................................................................................................................................ 25 0 8 0.13 1 1 0
................................CCCGACGTTTTTACATGTGTTCAA................................................................................................................................................................................................... 24 0 8 0.13 1 1 0
.............................................CATGTGTTCAAGTAAGAAAGTTACGA.................................................................................................................................................................................... 26 0 8 0.13 1 0 1
...............................GCCCGACGTTTTTACATGTGTTCAA................................................................................................................................................................................................... 25 0 8 0.13 1 1 0
........................................TTTTACATGTGTTCAAGTAAGAAAGT......................................................................................................................................................................................... 26 0 8 0.13 1 0 1
....................................................................................................................................................................................................................................GGGAAACGCGGCTAGATGCCGTT 23 0 11 0.09 1 0 1
..................................................................................................................................................................................................................................CCGGGAAACGCGGCTAGATGCCGT. 24 0 11 0.09 1 1 0
...................................................................................................................................................................................................................................CGGGAAACGCGGCTAGATGCC... 21 0 12 0.08 1 0 1
..........................AGTCCGCCCGACGTTTTG............................................................................................................................................................................................................... 18 2 12 0.08 1 1 0
.....................................................................................................................................................................................................................................GGAAACGCGGCTAGATGCCGT. 21 0 13 0.08 1 0 1
.........................................................................................................GGCCAAAGCGCAGGACTTC............................................................................................................................... 19 3 15 0.07 1 1 0
............................................................................................................................................................................................................................ATCGTTCCGGGGTACGCG............. 18 3 17 0.06 1 1 0
...............................................................................TTTCAAGGCCATCTAAAA.......................................................................................................................................................... 18 2 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004397:2872-3122 - dwi_354 TTGCAATGACAAAGAACATACAAAG--CTC-AGACGGGCTGCAAAAATGTACACAAGTTCATTCTTTCAATGCTATTTTTAGAAAGTTCCGTTAGATTTGCGGA-AAACCCGGTTTGGCGTTTTGAAGATTG-AACATTTTAGTGTCAATTTGTGTTCGTTTTGTCCAAGTATTTTG--TGAT---GATA-TTTTTGATTTTTGGCCTATAGACGCAACCAGTGTGCAACGTCGCAAG----GCCCTTTGCGC-------C------------GATCTACGGCAA
droMoj3 scaffold_6500:28331120-28331337 - TTGCATTGATAAAGAACCGACAAAC--CGC-AGGCGGGCTGCAAAAATTAAACCAAGTTCATTTTTTCAATGCTATTTTTAGAAACTTCCGTTCGATTTCCAGATAAACCCGGCTTGGCGTTTTGAAGAATG-AACATTTTAGTGTCAATTTGTTTTCATTTAGTCCAAATATTCTG--TGAT---GAAA-ATTTTGATTTTTGGTCTTTAGATGCAATCACTGTGCA---------------------------------------------------------
dp5 Unknown_singleton_3645:1505-1722 + TTGTTTTGACCAAAAGCATAAAAAG--CAG-AGACACGTCGCAAAAGTGAGCATGTGTTCGTCATTTCAATTCTATTTTTTGAAAGTCCTGTTGC----------AAATCCGGTTTGCCACAAAGAAGTTTG-GACATTTATGAGACGATATGGTTACATGTTGTCAAAATATTTTA--TAAT---TGAT-TTTTTGATTTTTGGCCTATGGGCGCAACCACTGTGCACTGCAACAA-----------------------------------------------G
droPer2 scaffold_66:319633-319851 - TTGTTTTGACAAAAAGCATAAAAAG--CAG-AGACGCGTCGCAAAAGTGAACATGTGTTCGTCATTTCAATTCTATTTTTTGAAAGTCCTGTTGC----------AAATCCGGTTTGCCACAAAGAAGTTTGGGACATTTATGAGACGATATGGTTACATGTTGTCAAAATATTTTA--TAAT---TGAT-TTTTTGATTTTTGGCCTATGGGCGCAACCACTGTGCACTGCAACAA-----------------------------------------------G
droAna3 scaffold_13137:193730-193984 - ATGTTTTGACGAAGAGTTAACTTAA--TGC-CGCTGCGCTGCAAAACTAAACACGTGTTCAAGCTTTGCATTCTATTTTTAGAAAATCTCTTTAGATTTCCAGAAAAATCTGGTTTGCCATTGAGAAACTTG-GACATTGTGTAGACAGTTTCTTTACTTTTCGCAAATTTTCT--GTTCTG---CGGAT-TTTTTTAATTATGGCCTATGAGCGCAACCACTGTGCAGTGGTCGGT-CACAGCCCTTGGATC-------T------------CGCCTATCGTAA
droBip1 scf7180000395461:12953-13186 - TTGCATCGAAATATTTT-TCAAGAG--CTC-CGATGCGCTGCAGAAATGAACACGTTTTCTTGCTTTTAATGGTTTTTCTAGAATATAACATTAGGTTTCCAGCGAAAACCGGTTTGCTAACTTGAAGATTG-GTCATTTTAAAATCAAACTGTGTAAATTAAGTTTAAATATTTTT--AAAT--CAGAT-TTTTTGACTTTTGGCCTATGG-CGGAACCACAGTGCATTGGCTCGA----------------CTTGCGCC------------------------
droKik1 scf7180000300662:1000-1244 - TTGCTTCGAAATATTTC-ACCACAG--CTC-CGATGCGCTGTTGAAATGAACACGTTTTCATGCTTTTGATTATATTTTTAGAATGTACCGTTGGGTTTCCAGCGAAAAGCCGTTTGCAAATTGGTAGATTG-AACATTTTAGAGACAAACTGTGTAAATTTAATTCAAATATTTTC--AAAT--CGGTT-TTTTTGCTTTTTGGCCTCTGA-CGGAACCACTGTGCACTGTCGG------------------CTT----C-------ACCCCACCTTACCCTAA
droFic1 scf7180000453928:229462-229702 + TTGTTTTGTAAAAATTCTTGCTAAG--TAC-AACTGCCCTGCAAAAATGTACACATGATCACGCTTTGCATTCTATTTTTAGAAAGTCCCGTTAGATTTCCAGACAAAACC------TCATCAAGAAGTTTG-AACATTTTAGAGTCAATTTGCTTACAATTTTTTTCTATTCGTTG--TTAT--CACTT-TTTTTGATTTTTGGCCTCTGG-CGGAACCACAGTGCAATCGT--AAG---------------CTC----G-------CCAACAATCGGAAATAA
droEle1 scf7180000490372:36931-37155 + TGAAAGAGAGAAATAACTTCCAAAG--CGC-AGCTGCGTTGCCAAAATGAACACGTGTTCACGATTGCAAATCTATTTTTAGAAAGTACCGTTAGATTTCTAGTAAAATCCGGTATGCCAAAGAGAAGTTTG-GACTTTTAAGAGACAATTTTGATACATTTTGCTTAAAAAATATG--TCAT--AAAAT-TTTTTGATTTTTGGCCTCTGA-CGGAACCACTGTGCACTGATGC--------------------------------------------------
droRho1 scf7180000777088:7871-8103 - TTGTTTTGTAAAAATTCTTGCTAAG--TAC-AGCTGCGCAGCAAAAATGTACACATGATCACGCTTTGCATTCTATTTTTAGAAAGTCCCGTTAGATTTCCAGACAAAACCGGTTTGCCATCAAGAAGTTTG-AACATTTTAGAGACAATTTGCTTGCAATTTTTTTCTATTCATTG--TTAT--CCCTTTCTTTTGATTTTTGGCCTCTGG-CGGAACCACTGTGCAGTGGCGCTGG----GTT---------------C------------------------
droBia1 scf7180000302425:43406-43636 - -------GAAAAAAAACTTCCAAAG--CGC-AGCTGCGTTGCCAAAATGAACACGTGTTCACGATTGCAAATCTATTTTTAGAAAGTACCGTTAGATTTCCAGTAAAATCCGGTGTGCCTAAGAGAAGTTTG-GACTTTTAGGAGACAATTTCGATACATTTTGCTTAAAAATA-TG--TCAT--CACAT-TTTTTGATTTCTGGCCTCTGA-CGGAACCACTGTGCACTGTGCGC------------------------C------------GGTCCGTGATAC
droTak1 scf7180000410697:24428-24671 - TTGTTTTGACGAAATGCTAACGTAA--CGC-CGCTGCGCTGCAAAATTGAACACGTGTTCACACTTTGTGTTCTATTTTTAGAAAGTCCCGTTAGATTTCCAGAAAATTCCGGTTTGCCATTAAGAAGCTTG-GTTATTTTTTAGACAATTTGTATACTTATCGATAATTTTTG--GTAATTT---CGAT-TTTTTGATTTTTGGCCTATGGGCGCAACCACTGTGCACTGTGAGA------------------------CGCCTTTACC---AACCC----ACG
droEug1 scf7180000409493:14085-14282 - TCGCGATGAG-----------------CGCAAGCTGCGCTGTGCAAATGAACACTTGCTCACACCTTCAATTCTATTTTTAGAAAGAACCGTTAGATTTCCAGAAAAGTCTAGTTTGCTATGAAGAAGCTTG-CACATTTTAGAAACGATTTGTATACGTTTTTTATATTTTTGTTG--TTAT---GACT-TTTTATATTTTCCGCCTATGA-CTGCA---------------GCTA-----------------------------------------------G
dm3 chr2R:904377-904576 + TTGGAATGCAGAAATTA-C--AATGCATGC-AATTTCGCTTCACAAATGAACACATGTGCATAACTTTAATTCTATTTTTAAAAAGT----------TTGAAGCAAAAACTGGTTTTGGCTG---------G-AAATATTTGGAGGCAATTCGGTTACTTCATGCGTAAATATATTT--AGAT---GTTT-TTTTTTATTTTTGGCCTCTGA-CGGAACCACTGTGGAACG------------------------------------------------------
droSim2 node_8958:1945-2166 - TTGGAATGCAGAAATTA-C--AATGCATGC-AATTTTGCTTCACAAATGAACACGTTTGCATAACTTTAATTCTATTTTTAGAAAGTTCCGTTAGGTTTGAAACAAAAACTCTTTTTGGCTGGAAATATTTG-GACTATTTGGAGACAATTTGGTTACTTTATGCGTAAATATATTT--AGATGTTTTTT-TTTTTTATTTTTGGCCTCTGA-CGGAACTATTGTGCAGTG------------------------------------------------------
droSec2 scaffold_66:3624-3845 - TTGGAATGCAGAAATTA-C--AATGCGTGC-AATTTTGCTTCACAAATGAACACGTTTGCATAACTTTAATTCTATTTTTAGAAAGTACCGTTAGGTTTGAAGCAAAAACTCGTTTTGGCTGGAAATATTTG-GACTATTTGGAGACAATTTGGTTACTTTATGCGTAAATATATTT--AGATGTTTTTT-TTTTTTATTTTTGGCTTCTGA-CGGAACTATTGTGCAGTG------------------------------------------------------
droYak3 X:21074138-21074362 - TTGTTGTGACGAAAAGCAATCAAAA--CTC-CGCTGGGCTGCAAAAATGAACAGCTGTTCTCTCTTTACACTATATTTTTAGAATGTCCCGTTAGAGTTA-AGACAAAAAGGTTTTACCATACACATATTTG-GACATTTTAGAGACAATCTGTTTACTTTTCGTAAATATTTG--GAAAAT---TTTTT-TTTTTAATTTTTGGCCTATGGGCGCAACCACTGTGCAACGGC--AA-----------------------------------------------G

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTGCAATGACAAAGAACATACAAAG--CTC-AGACGGGCTGCAAAAATGTACACAAGTTCATTCTTTCAATGCTATTTTTAGAAAGTTCCGTTAGATTTGCGGA-AAACCCGGTTTGGCGTTTTGAAGATTG-AACATTTTAGTGTCAATTTGTGTTCGTTTTGTCCAAGTATTTTG--TGAT---GATA-TTTTTGATTTTTGGCCTATAGACGCAACCAGTGTGCAACGTCGCAAG----GCCCTTTGCGC-------C------------GATCTACGGCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................TGCGGA-AAACCCGGTTTGGCGTTT..................................................................................................................................................................2481.3811010100
............................................................................................TAGATTTGCGGA-AAACCCGGTTTGGCG.....................................................................................................................................................................2781.13909000
............................................................................................TAGATTTGCGGA-AAACCCGGTTTGG.......................................................................................................................................................................2581.13909000
.................................................................................................TTGCGGA-AAACCCGGTTTGGCGTTT..................................................................................................................................................................2580.75600060
...........................................................................................................................TGAAGATTG-AACATTTTAGTGTCAAT.......................................................................................................................................2670.43302010
...............................................................................................................................................................................TG--TGAT---GATA-TTTTTGATTTTTGGCC..............................................................................2650.40201010
..................................................................................................TGCGGA-AAACCCGGTTTGGCGTTTT.................................................................................................................................................................2580.38301020
................................................................TTTCAATGCTATTTTTAGAAAGTTCCGT.................................................................................................................................................................................................2880.38303000
............................................................................................................................................TAGTGTCAATTTGTGTTCGTTTTG.........................................................................................................................2470.29201010
...............................................TGTACACAAGTTCATTCTTTCAATGC....................................................................................................................................................................................................................2680.25202000
...................................................................CAATGCTATTTTTAGAAAGTTCCGT.................................................................................................................................................................................................2580.25202000
............................................................................................TAGATTTGCGGA-AAACCCGGTTTGGCGT....................................................................................................................................................................2880.25202000
.................................................................................................TTGCGGA-AAACCCGGTTTGGCGTTTT.................................................................................................................................................................2680.25201100
.................................................................................................TTGCGGA-AAACCCGGTTTGGCGTT...................................................................................................................................................................2480.25201010
............................................................................................TAGATTTGCGGA-AAACCCGGTTTGGC......................................................................................................................................................................2680.25201010
...................................................................................................................................................................................TGAT---GATA-TTTTTGATTTTTGGCCTA............................................................................2650.20100010
..........................................................................................................................................................................TATTTTG--TGAT---GATA-TTTTTGATT.....................................................................................2450.20100010
............................................................................................................................................TAGTGTCAATTTGTGTTCGTTTTGTC.......................................................................................................................2660.17100100
............................................................................................................................................TAGTGTCAATTTGTGTTCGT.............................................................................................................................2070.14100010
.........................................................................................................................TTTGAAGATTG-AACATTTTAGTGTCAAT.......................................................................................................................................2870.14100010
..................TACAAAG--CTC-AGACGGGCTGCAAAAATG............................................................................................................................................................................................................................................2870.14100010
...................ACAAAG--CTC-AGACGGGCTGCAAAAATG............................................................................................................................................................................................................................................2770.14101000
......................................................................................................................................................TTGTGTTCGTTTTGTCCAAGTATTTTG--..........................................................................................................2770.14101000
...............................................................................................................................................TGTCAATTTGTGTTCGTTT...........................................................................................................................1970.14100010
.......................................................................................................................................................TGTGTTCGTTTTGTCCAAGTATTTTG--..........................................................................................................2670.14101000
...........................................................................................................................TGAAGATTG-AACATTTTAGTGTCAATT......................................................................................................................................2770.14100010
.............................................................................................AGATTTGCGGA-AAACCCGGTTTGG.......................................................................................................................................................................2480.13101000
.........................................................................................CGTTAGATTTGCGGA-AAACCCGGT...........................................................................................................................................................................2480.13100010
........................................................................CTATTTTTAGAAAGTTCCGT.................................................................................................................................................................................................2080.13101000
......................................................................TGCTATTTTTAGAAAGTTCCGTTAG..............................................................................................................................................................................................2580.13101000
..............................................................................TTAGAAAGTTCCGTTAGATTTGCGGA-....................................................................................................................................................................................2680.13100010
.............................................................................................AGATTTGCGGA-AAACCCGGTTTGGCG.....................................................................................................................................................................2680.13101000
......................................................................TGCTATTTTTAGAAAGTTCCGTTAGAT............................................................................................................................................................................................2780.13101000
............................................................................................TAGATTTGCGGA-AAACCCGGTTTGGCT.....................................................................................................................................................................2780.13101000
...........................................................................................TTAGATTTGCGGA-AAACCCGGTTTGGCG.....................................................................................................................................................................2880.13101000
.........................................................................TATTTTTAGAAAGTTCCGTA................................................................................................................................................................................................2080.13101000
..................................................................TCAATGCTATTTTTAGAAAGTTCCGT.................................................................................................................................................................................................2680.13101000
..........................................................................................................AACCCGGTTTGGCGTTTTGAAGATTG-........................................................................................................................................................2680.13101000
......................................................................................TTCCGTTAGATTTGCGGA-AAACCCGGTT..........................................................................................................................................................................2880.13101000
...............................................................................TAGAAAGTTCCGTTAGATTTGCGGA-....................................................................................................................................................................................2580.13100010
................................................................................................TTTGCGGA-AAACCCGGTTTGGCGTTT..................................................................................................................................................................2680.13100010
..............................................................................................GATTTGCGGA-AAACCCGGTTTGGCG.....................................................................................................................................................................2580.13101000
......................................................................TGCTATTTTTAGAAAGTTCCGT.................................................................................................................................................................................................2280.13101000
......................................................................TGCTATTTTTAGAAAGTTCCGTTAGATT...........................................................................................................................................................................................2880.13101000
.................................................TACACAAGTTCATTCTTTCAATGCTAT.................................................................................................................................................................................................................2780.13100010
.......................................TGCAAAAATGTACACAAGTTCATTCTTTT.........................................................................................................................................................................................................................2980.13101000
..................................................................................................TGCGGA-AAACCCGGTTTGGCGTTTTG................................................................................................................................................................2680.13101000
....................................................................................AGTTCCGTTAGATTTGCG.......................................................................................................................................................................................1890.11101000
..................................................................................................................TTGGCGTTTTGAAGATTG-AACATTT.................................................................................................................................................2590.11100010
.........................................................................................................................TTTGAAGATTG-AACATTTTAGTGTCA.........................................................................................................................................2690.11101000
...................................................................................................................TGGCGTTTTGAAGATTG-AACATTT.................................................................................................................................................2490.11100010
..................................................................................................................................................................................................................................................GCCCTTTGCGC-------C------------GATCTACGGCAA24110.09101000
droMoj3
TTGCATTGATAAAGAACCGACAAAC--CGC-AGGCGGGCTGCAAAAATTAAACCAAGTTCATTTTTTCAATGCTATTTTTAGAAACTTCCGTTCGATTTCCAGATAAACCCGGCTTGGCGTTTTGAAGAATG-AACATTTTAGTGTCAATTTGTTTTCATTTAGTCCAAATATTCTG--TGAT---GAAA-ATTTTGATTTTTGGTCTTTAGATGCAATCACTGTGCA---------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................TGAAGAATG-AACATTTTAGTGTCAAT.......................................................................................................................................26121.00212000019
...........................................................................................................................TGAAGAATG-AACATTTTAGTGTCAATT......................................................................................................................................27117.00173000014
..................................................................TCAATGCTATTTTTAGAAACTTCCGT.................................................................................................................................................................................................2616.006500001
..................................................................................................TCCAGATAAACCCGGCTTGGCGTTT..................................................................................................................................................................2515.005000005
.TGCATTGATAAAGAACCGACAAAC--CGC-A.............................................................................................................................................................................................................................................................2814.004400000
..........................................................................................................................................................TTTCATTTAGTCCAAATATTCTG--TG........................................................................................................2513.003300000
.................................................................................................TTCCAGATAAACCCGGCTTGGCGTT...................................................................................................................................................................2513.003200001
.................................................................................................................................................................................................TTTGATTTTTGGTCTTTAGATGCAAT..................................................................2613.003000003
..................................................................TCAATGCTATTTTTAGAAACTTCCGTC................................................................................................................................................................................................2712.002200000
...........................................................................................................................TGAAGAATG-AACATTTTAGTGTCA.........................................................................................................................................2412.002110000
.........TAAAGAACCGACAAAC--CGC-AGGC..........................................................................................................................................................................................................................................................2312.002200000
.................................................................................................TTCCAGATAAACCCGGCTTGGCGTTT..................................................................................................................................................................2612.002200000
............................................................................................................................................................................TTCTG--TGAT---GAAA-ATTTTGATTTTTGG................................................................................2712.002200000
.TGCATTGATAAAGAACCGACAAAC--CG................................................................................................................................................................................................................................................................2612.002200000
............................................................................................TCGATTTCCAGATAAACCCGGCTTG........................................................................................................................................................................2512.002200000
.......................................................................................................................................................TGTTTTCATTTAGTCCAAATATTCTG--..........................................................................................................2612.002200000
.......................................................................................................................................................................................................TTTTGGTCTTTAGATGCAATCACTG.............................................................2512.002000002
.........................................................................................................................................................................................................TTGGTCTTTAGATGCAATCACTGTGC..........................................................2612.002200000
.....TTGATAAAGAACCGACAAAC--CGC-AGG...........................................................................................................................................................................................................................................................2612.002100001
.TGCATTGATAAAGAACCGACAAAC--CGC-..............................................................................................................................................................................................................................................................2712.002200000
.............................................................................................................................................................................TCTG--TGAT---GAAA-ATTTTGATTTTTGGTC..............................................................................2812.002200000
.......................................................................................TCCGTTCGATTTCCAGATAAACCCGGC...........................................................................................................................................................................2712.002200000
................................................................................................TTTCCAGATAAACCCGGCTTGGCGTT...................................................................................................................................................................2612.002000002
.........TAAAGAACCGACAAAC--CGC-AGGCG.........................................................................................................................................................................................................................................................2412.002200000
...............................................................................TAGAAACTTCCGTTCGATTTCCAGAT....................................................................................................................................................................................2612.002200000
..........................................................................................................................................................TTTCATTTAGTCCAAATATTCTG--TGAT---G..................................................................................................2811.001100000
.............................................AATTAAACCAAGTTCATTTTTTCAA.......................................................................................................................................................................................................................2511.001100000
..............................................................................................................................................................................CTG--TGAT---GAAA-ATTTTGATTTTTGG................................................................................2511.001100000
.................................................................................................................................................................................................TTTGATTTTTGGTCTTTAGATGCAATC.................................................................2711.001000001
...........AAGAACCGACAAAC--CGC-AGGCGGGC......................................................................................................................................................................................................................................................2511.001100000
..................................................................................................TCCAGATAAACCCGGCTTGGCGTT...................................................................................................................................................................2411.001000001
.................................................................TTCAATGCTATTTTTAGAAACTTCCG..................................................................................................................................................................................................2611.001100000
.....TTGATAAAGAACCGACAAAC--CGC-AGGCG.........................................................................................................................................................................................................................................................2811.001000001
...........................................................................................................................TGAAGAATG-AACATTTTAGTGTC..........................................................................................................................................2311.001100000
.......................................................................................................................................................................................................TTTTGGTCTTTAGATGCAATCACTGT............................................................2611.001000001
.......GATAAAGAACCGACAAAC--CGC-AGGC..........................................................................................................................................................................................................................................................2511.001100000
.................................................................................................................................................................................................TTTGATTTTTGGTCTTTAGATGC.....................................................................2311.001100000
..................................................................TCAATGCTATTTTTAGAAACTTCCGTTC...............................................................................................................................................................................................2811.001100000
................................................................................................................................................................................................TTTTGATTTTTGGTCTTTAGATG......................................................................2311.001100000
.........TAAAGAACCGACAAAC--CGC-AGGCGGG.......................................................................................................................................................................................................................................................2611.001100000
...........................................................................................................................TGAAGAATG-AACATTTTAGTGTCAATTT.....................................................................................................................................2811.001000001
.....TTGATAAAGAACCGACAAAC--CGC-A.............................................................................................................................................................................................................................................................2411.001000001
................................................................................................TTTCCAGATAAACCCGGCTTGGCGT....................................................................................................................................................................2511.001000010
..........................................................................................................................TTGAAGAATG-AACATTTTAGTGTCA.........................................................................................................................................2511.001100000
................................................................................................................................................................TTAGTCCAAATATTCTG--TGAT---GAAA-ATT...........................................................................................2811.001100000
.TGCATTGATAAAGAACCGACAAAC--CGC-AG............................................................................................................................................................................................................................................................2911.001100000
...................................................................................................................................................................................................TGATTTTTGGTCTTTAGATGCAATC.................................................................2511.001100000
.......................................................................................................................................................................................................TTTTGGTCTTTAGATGCAATCACT..............................................................2411.001000100
.........................................................................................................................................................................................................TTGGTCTTTAGATGCAATCACTGTGCA---------------------------------------------------------2711.001100000
.......................................................................................................................................................TGTTTTCATTTAGTCCAAATATTCT.............................................................................................................2511.001100000
...........................................................................................TTCGATTTCCAGATAAACCCGGCTTGGCG.....................................................................................................................................................................2911.001000001
..................................................................................................TCCAGATAAACCCGGCTTGGCGT....................................................................................................................................................................2311.001100000
..........................................................................................................................................................................TATTCTG--TGAT---GAAA-ATTTTGATTT....................................................................................2511.001000001
.................................................................TTCAATGCTATTTTTAGAAACTTCCGT.................................................................................................................................................................................................2711.001100000
.TGCATTGATAAAGAACCGACAAAC--CGC-AA............................................................................................................................................................................................................................................................2911.001100000
......................................................................TGCTATTTTTAGAAACTTCCGTTCGAT............................................................................................................................................................................................2711.001000001
.........................................................................................................................................................TTTTCATTTAGTCCAAATATTCTG--T.........................................................................................................2511.001100000
................................................................................................TTTCCAGATAAACCCGGCTTG........................................................................................................................................................................2111.001100000
...CATTGATAAAGAACCGACAAAC--CG................................................................................................................................................................................................................................................................2411.001100000
......................................................................................................................................................................................................TTTTTGGTCTTTAGATGCAATCACTC.............................................................2611.001000010
............................................................................TTTTAGAAACTTCCGTTCGATTTCC........................................................................................................................................................................................2511.001100000
........................................................................................................................................................................................................TTTGGTCTTTAGATGCAATCACTGTGC..........................................................2711.001100000
...........................................................................................TTCGATTTCCAGATAAACCCGGCTTG........................................................................................................................................................................2611.001100000
................................................................TTTCAATGCTATTTTTAGAAACTTC....................................................................................................................................................................................................2511.001100000
.............................................................................TTTAGAAACTTCCGTTCGATTTCC........................................................................................................................................................................................2411.001000010
.................................................................TTCAATGCTATTTTTAGAAACTTCCGTC................................................................................................................................................................................................2811.001100000
............................................................................................TCGATTTCCAGATAAACCCGGCTT.........................................................................................................................................................................2411.001100000
.................................................................................................................................................................TAGTCCAAATATTCTG--TGAT---GAAA-AT............................................................................................2611.001100000
.TGCATTGATAAAGAACCGACAAAC--..................................................................................................................................................................................................................................................................2411.001100000
.................................................................................................TTCCAGATAAACCCGGCTTGGCGT....................................................................................................................................................................2411.001000001
.........TAAAGAACCGACAAAC--CGC-AGGCGGGC......................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................TTTTTGGTCTTTAGATGCAATCACTGT............................................................2711.001000001
..........................................................................................................................TTGAAGAATG-AACATTTTAGTGTCAAT.......................................................................................................................................2711.001000001
...............................................................................................................................................................TTTAGTCCAAATATTCTG--TGAT---G..................................................................................................2311.001100000
......................................................................................................................................................TTGTTTTCATTTAGTCCAAATATTCTG--..........................................................................................................2711.001100000
.......................................TGCAAAAATTAAACCAAGTTCATTT.............................................................................................................................................................................................................................2511.001100000
.........................................................................................................................TTTGAAGAATG-AACATTTTAGTGTCAAT.......................................................................................................................................2811.001000001
.........................................................................................................................................................TTTTCATTTAGTCCAAATATTCTG--TGA.......................................................................................................2711.001100000
..................................................................TCAATGCTATTTTTAGAAACTTCCG..................................................................................................................................................................................................2511.001100000
............................................................................................................................................................TCATTTAGTCCAAATATTCTG--TGAT---GA.................................................................................................2711.001100000
.....TTGATAAAGAACCGACAAAC--CGC-AGGC..........................................................................................................................................................................................................................................................2711.001100000
............................................................................TTTTAGAAACTTCCGTTCGATTTCCAG......................................................................................................................................................................................2711.001100000
............................................................................................................................................................................TTCTG--TGAT---GAAA-ATTTTGATTTTTGGC...............................................................................2820.501000001
dp5
TTGTTTTGACCAAAAGCATAAAAAG--CAG-AGACACGTCGCAAAAGTGAGCATGTGTTCGTCATTTCAATTCTATTTTTTGAAAGTCCTGTTGC----------AAATCCGGTTTGCCACAAAGAAGTTTG-GACATTTATGAGACGATATGGTTACATGTTGTCAAAATATTTTA--TAAT---TGAT-TTTTTGATTTTTGGCCTATGGGCGCAACCACTGTGCACTGCAACAA-----------------------------------------------GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................TATGGGCGCAACCACTGTGCAG........................................................2221.5030300000000
.........................................................................................................................AAAGAAGTTTG-GACATTTATGAGACGA........................................................................................................................................2721.5030000000300
.........................................................................................................................AAAGAAGTTTG-GACATTTATGAGAC..........................................................................................................................................2521.0020000000200
..............................................................................................................................................................................TTA--TAAT---TGAT-TTTTTGATTTTTGG................................................................................2511.0010000000010
..................................................................................................................TTGCCACAAAGAAGTTTG-GAC.....................................................................................................................................................2121.0020110000000
..............................................................................................................................................................................................................CTATGGGCGCAACCACTGTG...........................................................2011.0010100000000
...............................................................................................................................................................................................................TATGGGCGCAACCACTGTGCA.........................................................2111.0010100000000
.............................................................................................................................AAGTTTG-GACATTTATGAGAC..........................................................................................................................................2121.0020000000200
............................................................................................................TCCGGTTTGCCACAAAGAAGTTTG-GAC.....................................................................................................................................................2720.5010010000000
...................................................................................................................TGCCACAAAGAAGTTTG-GAC.....................................................................................................................................................2020.5010100000000
.........................................................................................................................AAAGAAGTTTG-GACATTTATGAGACG.........................................................................................................................................2620.5010000000100
......................................................................................................................CACAAAGAAGTTTG-GACATTTATGAGA...........................................................................................................................................2720.5010000000100
............................................................................................................TCCGGTTTGCCACAAAGAAGTTTG-GA......................................................................................................................................................2620.5010100000000
....................................................................................................................GCCACAAAGAAGTTTG-GACAT...................................................................................................................................................2120.5010100000000
...................................................................................................................TGCCACAAAGAAGTTTG-GACATTTA................................................................................................................................................2520.5010000000100
.................................................................................................................................................................................................................TGGGCGCAACCACTGTGCAG........................................................2020.5010100000000
droPer2
TTGTTTTGACAAAAAGCATAAAAAG--CAG-AGACGCGTCGCAAAAGTGAACATGTGTTCGTCATTTCAATTCTATTTTTTGAAAGTCCTGTTGC----------AAATCCGGTTTGCCACAAAGAAGTTTGGGACATTTATGAGACGATATGGTTACATGTTGTCAAAATATTTTA--TAAT---TGAT-TTTTTGATTTTTGGCCTATGGGCGCAACCACTGTGCACTGCAACAA-----------------------------------------------GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................AAGTCCTGTTGC----------AAATCCGGTT..........................................................................................................................................................................2211.001010000
...TTTTGACAAAAAGCATAAAAAG--CAG-AGA...........................................................................................................................................................................................................................................................2840.753030000
...................................................................................................................................................................................TAAT---TGAT-TTTTTGATTTTTGGCC..............................................................................2420.501010000
droAna3
ATGTTTTGACGAAGAGTTAACTTAA--TGC-CGCTGCGCTGCAAAACTAAACACGTGTTCAAGCTTTGCATTCTATTTTTAGAAAATCTCTTTAGATTTCCAGAAAAATCTGGTTTGCCATTGAGAAACTTG-GACATTGTGTAGACAGTTTCTTTACTTTTCGCAAATTTTCT--GTTCTG---CGGAT-TTTTTTAATTATGGCCTATGAGCGCAACCACTGTGCAGTGGTCGGT-CACAGCCCTTGGATC-------T------------CGCCTATCGTAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............GAGTTAACTTAA--TGC-CGCTGCGCTGC...................................................................................................................................................................................................................................................26100.303210000
..............................................................................................................................AACTTG-GACATTGTGTAGACAGTTT.....................................................................................................................................2540.251010000
...TTTTGACGAAGAGTTAACTTAA--TGC-C.............................................................................................................................................................................................................................................................2680.131010000
.......GACGAAGAGTTAACTTAA--TGC-CGCTGC........................................................................................................................................................................................................................................................2780.131010000
.....TTGACGAAGAGTTAACTTAA--TGC-CGCT..........................................................................................................................................................................................................................................................2780.131100000
.................TAACTTAA--TGC-CGCTGCGCTGCAAAAC..............................................................................................................................................................................................................................................27100.101010000
..............AGTTAACTTAA--TGC-CGCTGCGCTGCA..................................................................................................................................................................................................................................................26100.101100000
.................TAACTTAA--TGC-CGCTGCGCTGCAAA................................................................................................................................................................................................................................................25100.101100000
.............GAGTTAACTTAA--TGC-CGCTGCGCTG....................................................................................................................................................................................................................................................25100.101100000
..............................................................................................................TGGTTTGCCATTGAGAAACTTG-GACAC...................................................................................................................................................27120.081010000
..........................................................................................................................................................................................................TGGCCTATGAGCGCAACCACTGTGC..........................................................25150.071100000
droBip1
TTGCATCGAAATATTTT-TCAAGAG--CTC-CGATGCGCTGCAGAAATGAACACGTTTTCTTGCTTTTAATGGTTTTTCTAGAATATAACATTAGGTTTCCAGCGAAAACCGGTTTGCTAACTTGAAGATTG-GTCATTTTAAAATCAAACTGTGTAAATTAAGTTTAAATATTTTT--AAAT--CAGAT-TTTTTGACTTTTGGCCTATGG-CGGAACCACAGTGCATTGGCTCGA----------------CTTGCGCC------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTGCTTCGAAATATTTC-ACCACAG--CTC-CGATGCGCTGTTGAAATGAACACGTTTTCATGCTTTTGATTATATTTTTAGAATGTACCGTTGGGTTTCCAGCGAAAAGCCGTTTGCAAATTGGTAGATTG-AACATTTTAGAGACAAACTGTGTAAATTTAATTCAAATATTTTC--AAAT--CGGTT-TTTTTGCTTTTTGGCCTCTGA-CGGAACCACTGTGCACTGTCGG------------------CTT----C-------ACCCCACCTTACCCTAASizeHit CountTotal NormTotal
No Reads
droFic1
TTGTTTTGTAAAAATTCTTGCTAAG--TAC-AACTGCCCTGCAAAAATGTACACATGATCACGCTTTGCATTCTATTTTTAGAAAGTCCCGTTAGATTTCCAGACAAAACC------TCATCAAGAAGTTTG-AACATTTTAGAGTCAATTTGCTTACAATTTTTTTCTATTCGTTG--TTAT--CACTT-TTTTTGATTTTTGGCCTCTGG-CGGAACCACAGTGCAATCGT--AAG---------------CTC----G-------CCAACAATCGGAAATAASizeHit CountTotal NormTotal
No Reads
droEle1
TGAAAGAGAGAAATAACTTCCAAAG--CGC-AGCTGCGTTGCCAAAATGAACACGTGTTCACGATTGCAAATCTATTTTTAGAAAGTACCGTTAGATTTCTAGTAAAATCCGGTATGCCAAAGAGAAGTTTG-GACTTTTAAGAGACAATTTTGATACATTTTGCTTAAAAAATATG--TCAT--AAAAT-TTTTTGATTTTTGGCCTCTGA-CGGAACCACTGTGCACTGATGC--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTGTTTTGTAAAAATTCTTGCTAAG--TAC-AGCTGCGCAGCAAAAATGTACACATGATCACGCTTTGCATTCTATTTTTAGAAAGTCCCGTTAGATTTCCAGACAAAACCGGTTTGCCATCAAGAAGTTTG-AACATTTTAGAGACAATTTGCTTGCAATTTTTTTCTATTCATTG--TTAT--CCCTTTCTTTTGATTTTTGGCCTCTGG-CGGAACCACTGTGCAGTGGCGCTGG----GTT---------------C------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
-------GAAAAAAAACTTCCAAAG--CGC-AGCTGCGTTGCCAAAATGAACACGTGTTCACGATTGCAAATCTATTTTTAGAAAGTACCGTTAGATTTCCAGTAAAATCCGGTGTGCCTAAGAGAAGTTTG-GACTTTTAGGAGACAATTTCGATACATTTTGCTTAAAAATA-TG--TCAT--CACAT-TTTTTGATTTCTGGCCTCTGA-CGGAACCACTGTGCACTGTGCGC------------------------C------------GGTCCGTGATACSizeHit CountTotal NormTotal
No Reads
droTak1
TTGTTTTGACGAAATGCTAACGTAA--CGC-CGCTGCGCTGCAAAATTGAACACGTGTTCACACTTTGTGTTCTATTTTTAGAAAGTCCCGTTAGATTTCCAGAAAATTCCGGTTTGCCATTAAGAAGCTTG-GTTATTTTTTAGACAATTTGTATACTTATCGATAATTTTTG--GTAATTT---CGAT-TTTTTGATTTTTGGCCTATGGGCGCAACCACTGTGCACTGTGAGA------------------------CGCCTTTACC---AACCC----ACGSizeHit CountTotal NormTotal
No Reads
droEug1
TCGCGATGAG-----------------CGCAAGCTGCGCTGTGCAAATGAACACTTGCTCACACCTTCAATTCTATTTTTAGAAAGAACCGTTAGATTTCCAGAAAAGTCTAGTTTGCTATGAAGAAGCTTG-CACATTTTAGAAACGATTTGTATACGTTTTTTATATTTTTGTTG--TTAT---GACT-TTTTATATTTTCCGCCTATGA-CTGCA---------------GCTA-----------------------------------------------GSizeHit CountTotal NormTotal
No Reads
dm3
TTGGAATGCAGAAATTA-C--AATGCATGC-AATTTCGCTTCACAAATGAACACATGTGCATAACTTTAATTCTATTTTTAAAAAGT----------TTGAAGCAAAAACTGGTTTTGGCTG---------G-AAATATTTGGAGGCAATTCGGTTACTTCATGCGTAAATATATTT--AGAT---GTTT-TTTTTTATTTTTGGCCTCTGA-CGGAACCACTGTGGAACG------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................TG---------G-AAATATTTGGAGGCAATTCGGT..................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000100002100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................TG---------G-AAATATTTGGAGGCAATTCGG...................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................TCGGTTACTTCATGCGTAAAT..................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AAGT----------TTGAAGCAAAAACTGGT...........................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
.................................................................................................................TTTTGGCTG---------G-AAATATTTGGAGGCAA........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AAATATTTGGAGGCAATTCGGTTACT..............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TGGTTTTGGCTG---------G-AAATATTTGGAGG...........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TTCGGTTACTTCATGCGTAAATATA...............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................ATTCGGTTACTTCATGCGTA.....................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................ATATTTGGAGGCAATTCGGTTACTT.............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATTA-C--AATGCATGC-AATTTCG.......................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
.................................................................................................................TTTTGGCTG---------G-AAATATTTGGAGGC..........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TTTTGGCCTCTGA-CGGAACCACTGTGG..........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................GTTTTGGCTG---------G-AAATATTTGG..............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.................................TTTCGCTTCACAAATGAACAC.......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AACTGGTTTTGGCTG---------G-AAATATTTGG..............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TG---------G-AAATATTTGGAGGCAATTCGT...................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................AATTCGGTTACTTCATGCGTAAATATAT..............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TGAACACATGTGCATAAC............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TTTGGCTG---------G-AAATATTTGGAGGCAAT.......................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TTAAAAAGT----------TTGAAGCAAAAAC...............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TTCGCTTCACAAATGAACACATGTGCA................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TGGTTTTGGCTG---------G-AAATATTTGGAG............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TTACTTCATGCGTAAATATATTT--AGA.......................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTAAAAAGT----------TTGAAGCAAAA.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.......................................................................................................................CTG---------G-AAATATTTGGAGGCAAT.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................GGTTTTGGCTG---------G-AAATATTTGGAGGC..........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................CATGCGTAAATATATTT--AGAT---GTTT-TTT...........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TGAAGCAAAAACTGGTTTTGGCTG---------G-A.......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................TTGGCCTCTGA-CGGAACCACTGTGG..........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TTCATGCGTAAATATATTT--AGAT---G..................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................CATGTGCATAACTTTAATTCT...................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TCGCTTCACAAATGAACACATGTGCA................................................................................................................................................................................................................................2611.0010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................T----------TTGAAGCAAAAACTGGTTTT........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TT-TTTTTTATTTTTGGCCTCTGA-CGGA....................................................................2750.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CTCTGA-CGGAACCACTGTG...........................................................1940.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................TTT-TTTTTTATTTTTGGCCTCTGA-CGGA....................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TGGTTTTGGCTG---------G-AAATATTT................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................TTTTGGCCTCTGA-CGGAACCACTGTG...........................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................T-TTTTTTATTTTTGGCCTCTGA-CGGA....................................................................2660.3320000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................T-TTTTTTATTTTTGGCCTCTGA-........................................................................2260.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TTTTTTATTTTTGGCCTCTGA-CGGA....................................................................2560.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTTGGCCTCTGA-CGGAACCACTGTG...........................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................TTTTTGGCCTCTGA-CGGAACCACTGT............................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TTTTTGGCCTCTGA-CGGAACCACT..............................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................TTTTTGGCCTCTGA-CGGAACCACTG.............................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TT-TTTTTTATTTTTGGCCTCTGA-CGGAAC..................................................................2950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TTTTATTTTTGGCCTCTGA-CGGAACCAC...............................................................2860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TTTTTATTTTTGGCCTCTGA-CGGAACC.................................................................2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTGGAATGCAGAAATTA-C--AATG....................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TTTTTTATTTTTGGCCTCTGA-CGGAA...................................................................2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGGAATGCAGAAATTA-C--AATG....................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.TGGAATGCAGAAATTA-C--AATGC...................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ATTTTTGGCCTCTGA-CGGAAC..................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TATTTTTGGCCTCTGA-CGGAACCAC...............................................................2570.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TTTTGGCCTCTGA-CGGAACCA................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TTTTTGGCCTCTGA-CGGAAC..................................................................2080.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
droSim2
TTGGAATGCAGAAATTA-C--AATGCATGC-AATTTTGCTTCACAAATGAACACGTTTGCATAACTTTAATTCTATTTTTAGAAAGTTCCGTTAGGTTTGAAACAAAAACTCTTTTTGGCTGGAAATATTTG-GACTATTTGGAGACAATTTGGTTACTTTATGCGTAAATATATTT--AGATGTTTTTT-TTTTTTATTTTTGGCCTCTGA-CGGAACTATTGTGCAGTG------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................TTTTTTATTTTTGGCCTCTGA-CGGA....................................................................2530.67200000011000000000
...............................................................................................................................................................................TT--AGATGTTTTTT-TTTTTTATTTTTGGC...............................................................................2820.50100000000010000000
.............................................................................................................................................................................................T-TTTTTTATTTTTGGCCTCTGA-CGGA....................................................................2630.33100000001000000000
.................................................................................................................................TTG-GACTATTTGGAGACAATT......................................................................................................................................2130.33110000000000000000
........................................................................................................................TGGAAATATTTG-GACTATTTGGAGA...........................................................................................................................................2530.33100000000010000000
.......................................................................................................................CTGGAAATATTTG-GACTATTTGGAGAC..........................................................................................................................................2730.33100000001000000000
.............................................................................................................................................................................................T-TTTTTTATTTTTGGCCTCTGA-CGGAAC..................................................................2830.33100000010000000000
...........................................................................................................................................................................................TTT-TTTTTTATTTTTGGCCTCTGA-CGG.....................................................................2730.33100000000100000000
..................................................................................................................................TG-GACTATTTGGAGACAATTTGGT..................................................................................................................................2430.33100000000000010000
..............................................................................................................................TATTTG-GACTATTTGGAGACAATT......................................................................................................................................2430.33100000000001000000
............................................................................................................................................................................................TT-TTTTTTATTTTTGGCCTCTGA-C.......................................................................2440.25100000000100000000
............................................................................................................................................TGGAGACAATTTGGTTACTTTATGCGTAAA...................................................................................................................3080.13100000001000000000
............................................................................................................................................TGGAGACAATTTGGTTACTTTATGCGTA.....................................................................................................................2880.13100000000100000000
droSec2
TTGGAATGCAGAAATTA-C--AATGCGTGC-AATTTTGCTTCACAAATGAACACGTTTGCATAACTTTAATTCTATTTTTAGAAAGTACCGTTAGGTTTGAAGCAAAAACTCGTTTTGGCTGGAAATATTTG-GACTATTTGGAGACAATTTGGTTACTTTATGCGTAAATATATTT--AGATGTTTTTT-TTTTTTATTTTTGGCTTCTGA-CGGAACTATTGTGCAGTG------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTGTTGTGACGAAAAGCAATCAAAA--CTC-CGCTGGGCTGCAAAAATGAACAGCTGTTCTCTCTTTACACTATATTTTTAGAATGTCCCGTTAGAGTTA-AGACAAAAAGGTTTTACCATACACATATTTG-GACATTTTAGAGACAATCTGTTTACTTTTCGTAAATATTTG--GAAAAT---TTTTT-TTTTTAATTTTTGGCCTATGGGCGCAACCACTGTGCAACGGC--AA-----------------------------------------------GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................TCAAAA--CTC-CGCTGGGCTGCAAAAA..............................................................................................................................................................................................................................................2553.0015021000000012
...................................................................................................................................G-GACATTTTAGAGACAATCTGTTT.................................................................................................................................2411.00101000000000
............................................................................TTTTAGAATGTCCCGTTAGAGTTA-AGA.....................................................................................................................................................................................2790.22200000000002
...................TCAAAA--CTC-CGCTGGGCTGCAAA................................................................................................................................................................................................................................................2350.20101000000000
......................................................................................TCCCGTTAGAGTTA-AGACAAAAAGGTT...........................................................................................................................................................................2750.20101000000000
......................................................................................TCCCGTTAGAGTTA-AGACAAAAAG..............................................................................................................................................................................2450.20100000010000
......................................................................................TCCCGTTAGAGTTA-AGACAAAAAGGT............................................................................................................................................................................2650.20100100000000
..............................................................................TTAGAATGTCCCGTTAGAGTTA-AGA.....................................................................................................................................................................................2590.11101000000000
...............................................................CTTTACACTATATTTTTAGAATGTCCCG..................................................................................................................................................................................................28120.08101000000000
........................................................................................................................................................................................................TTTGGCCTATGGGCGCAACCACTG.............................................................24120.08101000000000
.................................................................TTACACTATATTTTTAGAATGTCCCGT.................................................................................................................................................................................................27130.08101000000000
.................................................................TTACACTATATTTTTAGAATGTCCCGTT................................................................................................................................................................................................28130.08101000000000
.................................................................TTACACTATATTTTTAGAATGTCCCG..................................................................................................................................................................................................26140.07101000000000
.......................................................................TATATTTTTAGAATGTCCCGT.................................................................................................................................................................................................21160.06100100000000
..........GAAAAGCAATCAAAA--CTC-CGCTG.........................................................................................................................................................................................................................................................23180.06101000000000

Generated: 05/17/2015 at 10:56 PM