ID:

dwi_3514

 Coordinate:

scf2_1100000004943:14983658-14983808 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.8 -17.6 -17.4

Flybase annnotation

CDS [Dwil\GK12830-cds]; exon [dwil_GLEANR_13172:6]; intron [Dwil\GK12830-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
star
  1. scf2_1100000002840:1020-1038 +
  2. scf2_1100000013467:161-179 +
  3. scf2_1100000004511:3796733-3796751 +
  4. scf2_1100000004513:2083777-2083795 +
  5. scf2_1100000004762:2238448-2238466 -
  6. scf2_1100000004943:11236930-11236948 -
  7. dwi_3514  scf2_1100000004943:14983724-14983742 -
  8. scf2_1100000004909:11726464-11726482 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TACTACTACTTCTTCTGCCATGCCTCCTGCTGCGTCCATGTGGCTGAAATGTAAGTCTTGGCGGCGGCAGCAGCAGCAGCTCCATCAACATCAACATCAGCATCAGCAGCGGCAGTGGCAGTGGCAGCGGCAGCAATACAGAGCAAACACGTTAAAGGATAATTGCCATTTGCCACTACTGTGCGCGTGTGTGTGTGTGCGTGTTGCCAACTGCCAGCTGCCAGCCTATGCCAAAACAAATATGTTTTCCA
********************************************************************************************************************((.((((((((.(((((........(((......))).........)))))..)))))))).))........*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
.............TCTGCCATGCCTCCTGCTGCGTCCATG................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0
..................................................................................................................................................................TTGCCATTTGCCACTACTGTGCGCGT............................................................... 26 0 1 1.00 1 1 0 0
...................ATGCCTCCTGCGGCGTGCCTG................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0
................................................................................................................................................AAATACGGTAAAGGATAATT....................................................................................... 20 2 2 0.50 1 1 0 0
.............................................GAAATGTAAGTATTGGAG............................................................................................................................................................................................ 18 2 5 0.20 1 1 0 0
.............................................GAAATGGAAGTCTGGGCG............................................................................................................................................................................................ 18 2 7 0.14 1 0 1 0
....................................................................................................................GGCAGTGGCAGCGGCAGCA.................................................................................................................... 19 0 8 0.13 1 1 0 0
..................................TCCATGTGGCAGAAGTGT....................................................................................................................................................................................................... 18 2 10 0.10 1 1 0 0
.........................................................................................................GCAGCGGCAGTGGCAGTGGC.............................................................................................................................. 20 0 12 0.08 1 0 1 0
................................................................................................................CAGTGGCAGTGGCAGCGGCA....................................................................................................................... 20 0 16 0.06 1 1 0 0
...........................................................................................................................................................................................TGTGTGTGTGTGCGTGTTG............................................. 19 0 18 0.06 1 0 1 0
.................................................................................................................AGTGGCAGTGGCAGCGGC........................................................................................................................ 18 0 19 0.05 1 0 1 0
............................................................................................................................................................................................GTGTGTGTGTGCGTGTTG............................................. 18 0 19 0.05 1 1 0 0
.......................................................................................................CAGCAGCGGCAGCGGCAGTGGC.............................................................................................................................. 22 1 20 0.05 1 0 1 0
.............................................................................................................................................................................................TGTATGTGTGCGTGTTGC............................................ 18 1 20 0.05 1 0 0 1
......................................................GTCTTGGCGGCAATAGCAGC................................................................................................................................................................................. 20 3 20 0.05 1 0 1 0

Anti-sense strand reads

ATGATGATGAAGAAGACGGTACGGAGGACGACGCAGGTACACCGACTTTACATTCAGAACCGCCGCCGTCGTCGTCGTCGAGGTAGTTGTAGTTGTAGTCGTAGTCGTCGCCGTCACCGTCACCGTCGCCGTCGTTATGTCTCGTTTGTGCAATTTCCTATTAACGGTAAACGGTGATGACACGCGCACACACACACACGCACAACGGTTGACGGTCGACGGTCGGATACGGTTTTGTTTATACAAAAGGT
***************************************************************((.((((((((.(((((........(((......))).........)))))..)))))))).))........******************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
......................................................................................................................................................................................................CGCACATCGGGTGTCGGTCGA................................ 21 3 1 1.00 1 1 0 0
...........GGAGACGGTACGGTGGAC.............................................................................................................................................................................................................................. 18 2 7 0.29 2 1 1 0
......................................................................................................................................................................................................................GTTGACGGTCGGCTACGG................... 18 2 11 0.09 1 1 0 0
......................................................................GTGGTCGTCGAGCTAGTTTTA................................................................................................................................................................ 21 3 17 0.06 1 0 0 1
..................................................................................GTTGTTGTAGTTGTAGTCG...................................................................................................................................................... 19 1 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004943:14983608-14983858 - dwi_3514 TACTACTACTTCTT---CTGCCATGCCT-CCTGCTGC----------G-TC-----------CATGTGGC-----------------------------------------------------------TGA--AATGTAAGTCT-----------------------------------------------------------TGGC--------GGCGGCAGCAG---C---------AGCAGCTCCATCAACATCAACATCAGCA--------------------------------TCAG-----------------------------------CA------------------------G---CGG-CAGTG---------------------G---------C---------------------AGT---------------------------------GGCAGCGGCAGCAATACAGAGCAAACACGTTAAAGGA-------------TA-------------------------------AT-TGCCATTTGCCA-----------------------CTAC-TGTGC--GCGT--------GTG----TGTGTGTGCG----------------TG------------------------------------------------------TTG-------CCAACT--GCCAG---CTGCCAGCCTATGCCAAAACAAATATGTTTTCCA--------------
droVir3 scaffold_12875:1115988-1116175 + GTGTGTCAAATTT----C-AACG-----------------------C----TTGTCAACA-----ATGGTGCAAG------------------------------------------------------AAA--AATGCAAGTGCAAAACAACAAAAGC-------------------------------------------AAC-----------------AACAA---C---------AACAACAACAA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---CAG-CAGCAGCA---------G------CAG---------CAGCCGCGACGAA---TA---TGTC---------------------------------G-------------------------------C-----------------AA---GCAGCAC--TCA-AAT---TTCCAAATG--CAC--------------------------------------TGTGT--GTGT--------GTG----TGAGTGTGTG----------------TG------------------------------------------------------C---------------------------------------------------TG--------------------
droMoj3 scaffold_6680:5315069-5315280 + CGCCTCCTCCTCAA---CGGCCACGGCGAACAGCAGC----------G-CC--------------------------------------------------------------------GGCTCGAGTTCCAGTTTCACGCGTCGACGACCGCCAGCGC-------------------------------------------CGC---TGCTAACG------------------------AACA------------ACAACATCAGCA--------------------------------TACACAGTGCGAGCAGCAACAACAACCACAACAACA-AC----------------------A---A---CAA-CTTCC----------------------------------------------------------------------------------------------------------------------TT----------------------------------AGTCAT--TTCCAAA---G-CGCTGAGCCCGTGTCT--------------------CTGT-----------------------TGTC----AA----------------------CGGGTCAG------------------------------------------------------------------------CCGCCCGC------------------CT--------------------
droGri2 scaffold_14853:4272596-4272770 + TAATGCTGCTTTAT---CTGCTG-----------------------G----GCGCTGGGGC--------GGCTT----------------------------------------------ACAT----------AAGATGTGTCCACAGCTCTCTAGGC-------------------------------------------AGC-----------------AGCAG---C---------AGCTGTCCGACCAACAA-------------CAA------------------------------------------------------------------------------------------------CAA-CAG--------------A------CAG---------C---------------------ATC---------------------------------G-------------------------ACAG--------------------CAGCAGTTAAGCACGTGTTAT--TTTCTATGTA--TAC----------------------------------A---TGTGT--GTGT--------GTG----TGTGTGTGTG----------------TG------------------------------------------------------T---------------------------------------------------GT--------------------
dp5 Unknown_group_520:12546-12725 + TACATCTGCCATGCCCGC-----------------------------G-GC-----------CATGTGGC-----------------------------------------------------------TGA--AATGTAAGTCT-----------------------------------------------------------TGG------------------------------------------------------------------------------------------------------------------------------------CGGCGGT------------CTCCAAAAA---AGCCAACGAAC---------A------TCC---------C------CA---CCAAACCAG-ACCGATGGAGAACCCAGACCCC-------------------------------------------------------------------------------------CATTCCT----A--TGC--------------------------------------TATGCGT------------GTG--TGTGTCTGTGTG----------------TG------------------------------------------------------C--CCAGCAATCCACTCAATCCGTTTCCG---TTTCC---------------TG--------------------
droPer2 scaffold_0:1207013-1207156 - TACATCTGCCATGCCCGC-----------------------------G-GC-----------CATGTGGC-----------------------------------------------------------TGA--AATGTAAGTCT-----------------------------------------------------------TGG------------------------------------------------------------------------------------------------------------------------------------CGGCGGT------------CTCCAAAAA---AGCCAACGAAC---------A------TCC---------C------CA---CCAAACCAG-ACCGATGGAGAACCCAGACCCC-------------------------------------------------------------------------------------CATTCCT----A--TGC--------------------------------------TATGCGT------------GTG--TGTGTGTGT--------------------------GTG------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:4685315-4685503 - CACCACCGCCGTCT---GTGCCG-----------------------T----CTGTTTGTGTGCGTGTGCCCCA---------CAGTCCC---AGTT------------ACGAGG------------GT--------------------------------------------------------------------------GGT-----------------GGTGG---C---------AGTGGCCACAC-------------------AGCCCACTTGCAACCGTATCCGTA------TC--------------------------------------------------------------------CG-CAATCGCA---------A------TCG---------C------------------AAT-------------------------------------------------------------CGCATCCGTCAATGCAAACACCCGACA-------------------------------GT-GGCGAGTGTGCATCA--------------------CTAT--------------------T--TGTG----CG----------------------TGAGTGTG------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395751:493235-493417 - CACCACCACAGTCT---GTGCCG-----------------------T----CTGTTTGTGTGCGTGTGCCCCA---------CAGTCCT---AGTT------------ACGAGG------------GT--------------------------------------------------------------------------GGC-----------------GGCGG---C---------AGTGGCCACGC-------------------CACCCACTTGCAACCGTATCCGTA------TC--------------------------------------------------------------------CG-CAAT---------------------CG---------C------------------AAT-------------------------------------------------------------CGCATCCGTCAATGCAAACACCCGACA-------------------------------GT-GGCGAGTTTGCATCA--------------------CTAT--------------------T--TGTG----CG----------------------TGAGTGTG------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302388:1784291-1784442 + AATAGCAGCAACTT---C-----------------------------------------------------------------------------------------------------AGCACAG------C-----------------CTCC--------------------------------------------------------TCTGTG------------------------GGCA------------GCAGCATCAGCATT--------GG-----------------------------------------------------------CAGCAGCGGCAGCAGCAATAGCAACTC---CAA-CGAC---------------------------------------AG---CAACAGCAGCTCCGGCGGTGGACACAGTCTCAGCTTCAAGAGCAACG-------------------------------GACA--------------CG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--CAGACATGT--------------------
droFic1 scf7180000453882:68121-68317 - TATTGCCGACGCCT---TCGCCGCAGCT-GTTGTTGC----------CGCC----------------GAC-CG---------AGGTAGCAGC----AGCAGCAGTAGC--------AGCAGCA--------------------------------------------------------------------------------GA-----------AAC---------------------AGCA------------GCAACAGCAA--------------CA------------------TC--------------------------------------------AGTAGCAGC---A------G---CAG-CAACAT------------------------------CAACAGCAG---CAACAGCAACGC------------------------------------------------------------------------------------CAGCAGCAACAC--CAA------TTG-------------------TTA-----------------------TCGTTGTGGG--CGTTGTGGTTGCA----------------------------------------------------------------------------------------TCGCCTG-------------------TTG-------CCGCCGG----------C--------------------
droEle1 scf7180000491057:27402-27584 - CACCACCAGTGCCG---T---------------------------------CTGTTTGTGTGCGTGTGCCCCA---------CAGTCCC---AGTT------------ACGATA------------GT--------------------------------------------------------------------------GGT-----------------GGTGG---C---------A---CCACCGGCA---A-------------CACCCACTTGCAACCGTATCCGTA------TC--------------------------------------------------------------------CG-CAATCGTA---------T------CCG---------C------------------AAT-------------------------------------------------------------CGCATCCGCCAATGCAAACACCAGACA-------------------------------GT-GGCGAGTTTGCATCA--------------------CTAT--------------------T--TGTG----CG----------------------TGAGTGTG------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779334:988490-988739 - CCCTGCATCATCCG---CAGCTAT-------------TGGCCCAAA----------------GCTATTCCGTG---------CAGTTGC----------AGAAGCACC--------A---------GC--------------------------------------------------------------------------AATTGC--------AACAGCAGCAA---C---------AGCAACTGCAGCA--------------------------------ACAGCAAC---------------------------------TGCAACAGCA-GC----------------------A---G---CAA-CAGCA---------------------------------------------------ACAGC---------------------------------AGGTC---------------------------------------------CCGCAACAACTC--AGT------TTG--GAAT---------------ACTT--------------------TAGC-AATGG--CAATGTGGCGACT--TCCG----AG----------------------CAAGTGCCTCTGCCCTCGCCTTACCAGCGGGTGCCCCTGCCACATGGCTACTAC--------------------------CCA-------CT----------------GCCCAA--------------
droBia1 scf7180000302126:2974020-2974224 - CAGTATGAACACTT---C----------------------------------------------------TAA---------CAGCAAC---AGG------------------------AACAGAAGG--------------------------------------------------------------------------AGC-----------------AGCAG---C---------A---------------G------CAGCAGC--------AGCAGCAGCAGCAGCA-----------------------------------------------------------------------G---CAA-CAGCAGCA---------A------CAG---------C------AG---CAACAGCAACATC---------------------------------AGCGA---------------------------------------------CGGCAGCTACGC-----------------------------GTTCAAGTGAAAATTCCGCAGCTGCTGCCCGCAC-TTCAT--GTAC--------GTA----TGTATGTACG----------------CA------------------------------------------------------CCA-------TCCACC--ATAGA---CTGCGAGTGTG---------------TG--------------------
droTak1 scf7180000415157:436356-436556 - GCAG-CAGCGACAG---C-----------------------------------------------------------------AGCAGC-------GA------------------------------------------------------------------------------------------------------------------------C---------------------AGCAGCAACAT------------CAACAG-----CAACATCAACAACATCAGCA------AC--------------------------------------------------------------------AA-CAGCAGCA---------G------CGGCAGCAACACCGGCAACAG---CAACAGCAATACT---------------------------------A---------------------------------------------GCGACAGCAGCAACAC--CAG-CACCACCACG----A--CGC--------------------------------------TGTACAC------------GTG--CTCCAGCGC----CTCCTCGTCGCTGATTG------------------------------------------------------C--CCAG-------------------CCG-------CCGCCAA--CAAAGATAT--------------------
droEug1 scf7180000409466:3032750-3032973 - GGCTAGCAAAACCA---CAA----------------------------------------------------G---------CAGCAGC---------------------------AGCAGCAGCA-------------------------------------------------------------------------------------------GC---------------------AGCAGCAACAT------------CAACAGC--------GGCAACAGAAACAGCA-----------------------------------------------------------------------A---CAA-CAACAACAACCACAACAACAGCAGCGGCAGCAACACTAGCAAAAGCAGC---AA---TAAC---------------------------------A-------------------------------G--------------AAACAGCAGCAACAC--CAG-CACCACCACG----A--CGC--------------------------------------TGTACAC------------GTG--CTCCAGCGC----CTCCTCGTCGCTGATTG------------------------------------------------------C--CCAG-------------------CCG-------CCGCCAA--CAAAGATAT--------------------
dm3 chrX:7203118-7203286 + CCACACCCCCTGGC---CGC-------------------------------CCATCCCCACTTGCATGTCCCGGTGGCAATGCATCCTC-------AAAT--------GCAGCATCAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGCAGCAG------------CAGCAGT--------TGCAGCAGGAGCAGCA-----------------------------------------------------------------------G---CAA-CAGGATCA---------G------CAG---------C------------------AGT-------------------------------------------------------------CACAGCAGGAGACACC------------------------TG---------------------CAACC----ATTG-----------------CTACCA-------------------------------------------------------------A----------------------------------------------------------------------------------------------------TG--------------------
droSim2 x:10053428-10053590 + CCCAACAACAGCAG---C-----------------------------------------------------------------------------------------------------AACAAAA------C-----------------A--------TTCTGCGGGTTGGTCGGAGTCCAGTCAATCGCAGCTTTCCACC---------------GC---------------------AGCA------------GCAACATCAGCAGC--------AG-----------------------------------------------------------CAGCAGC------------AGCAGCAA---CAA-CAGCAGCA---------A------CAA---------C------------------AAC-------------------------------------------------------------CACATCAACAGATACC------------------------AA---------------------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGGAGCAATCCCTGTGC
droSec2 scaffold_15:1293824-1293990 + CCCCAACAACAGCA---GC----------------------------------------------------------------------------------------------------AACAAAA------C-----------------A--------TACTGCGGGTTGGTCGGAGTCCAGTCAATCGCAGCTTTCCACC---------------GC---------------------AGCA------------GCAACATCAGCA--------------------------------GCAG-----------------------------------CAGCAGC------------AGCAGCAGCAACAA-CAGCAGCA---------A------CAA---------C------------------AAC-------------------------------------------------------------CACATCAACAGGTACC------------------------AA---------------------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGGAGCAATCCCTGTGC
droYak3 2R:13210252-13210440 + CTACTGCTGATGCT---CGCCTCT-------------CGGACCATA----------------AATATCGCACATGAGTGTTGCAT--GC-------GACG--------------------------GC----------------------------------------------------------------------------------------------AGCAGCAACAGCAACAACAACAGCAACAG------------CAA-----------------------CAACA------AC------------------------AGCAACAGCA-GC----------------------A---G---CAA-CACCA---------------------------------TCAGCAGTAGC---AA---TATT---------------------------------A-------------------------------C------------------AGTTTG----------------------AAT---------------GCCA--------------------CTAT-TATGC--CAAC--------TTG----TGAATG----------------------CAAGTGCG----------------------------------------------------------------------------------------G--CA-----AA--------------------
droEre2 scaffold_4845:15903195-15903351 - CAGCAACAGC--------------------------------------------------------------------------------------AACA--------GC---------AGCTCC-------------------------------------------------------------------------------------------------AGC---------------ACCA------------GCAACATTAACAT-----------------CAAC-GCAGCAACAGC--------------------------------------------AGGAGCAGC---A------G---CAG-CAGTAG------------------------------CAGCCGCAGCAGC---AA---CATC---------------------------------A-------------------------------C----C--------G---CAACAGCAA-----------------------------CAGCTTCGAGTCG--------------------C-G--T------------------G--TGTGCGTGCATGTGAG--------------G-------------------------------------------------------------------------------TTGTG-------TTGGCAA---------CT--------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TACTACTACTTCTT---CTGCCATGCCT-CCTGCTGC----------G-TC-----------CATGTGGC-----------------------------------------------------------TGA--AATGTAAGTCT-----------------------------------------------------------TGGC--------GGCGGCAGCAG---C---------AGCAGCTCCATCAACATCAACATCAGCA--------------------------------TCAG-----------------------------------CA------------------------G---CGG-CAGTG---------------------G---------C---------------------AGT---------------------------------GGCAGCGGCAGCAATACAGAGCAAACACGTTAAAGGA-------------TA-------------------------------AT-TGCCATTTGCCA-----------------------CTAC-TGTGC--GCGT--------GTG----TGTGTGTGCG----------------TG------------------------------------------------------TTG-------CCAACT--GCCAG---CTGCCAGCCTATGCCAAAACAAATATGTTTTCCA--------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............T---CTGCCATGCCT-CCTGCTGC----------G-TC-----------CATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGCCATTTGCCA-----------------------CTAC-TGTGC--GCGT--------...................................................................................................................................................................2611.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................G---------------------G---------C---------------------AGT---------------------------------GGCAGCGGCAGCA.......................................................................................................................................................................................................................................................................................................1980.13101000
...............................................................................................................................................................................................................................................................................................................G-----------------------------------CA------------------------G---CGG-CAGTG---------------------G---------C---------------------AGT---------------------------------GGC.................................................................................................................................................................................................................................................................................................................20120.08100100
.....................................................................................................................................................................................................................................................................................................................................................................................CAGTG---------------------G---------C---------------------AGT---------------------------------GGCAGCGGCA..........................................................................................................................................................................................................................................................................................................20160.06101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------GTG----TGTGTGTGCG----------------TG------------------------------------------------------TTG-------................................................................19180.06100100
......................................................................................................................................................................................................................................................................................................................................................................................AGTG---------------------G---------C---------------------AGT---------------------------------GGCAGCGGC...........................................................................................................................................................................................................................................................................................................18190.05100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG----TGTGTGTGCG----------------TG------------------------------------------------------TTG-------................................................................18190.05101000
droVir3
GTGTGTCAAATTT----C-AACG-----------------------C----TTGTCAACA-----ATGGTGCAAG------------------------------------------------------AAA--AATGCAAGTGCAAAACAACAAAAGC-------------------------------------------AAC-----------------AACAA---C---------AACAACAACAA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---CAG-CAGCAGCA---------G------CAG---------CAGCCGCGACGAA---TA---TGTC---------------------------------G-------------------------------C-----------------AA---GCAGCAC--TCA-AAT---TTCCAAATG--CAC--------------------------------------TGTGT--GTGT--------GTG----TGAGTGTGTG----------------TG------------------------------------------------------C---------------------------------------------------TG--------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................GTGCAAG------------------------------------------------------AAA--AATGCAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CAACAACAA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---C.....................................................................................................................................................................................................................................................................................................................................................................................................................22200.255005000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT--GTGT--------GTG----TGAGTGTGTG----------------..................................................................................................................................22200.153000000300000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CAA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---CAG-CAGCAGCA---------.................................................................................................................................................................................................................................................................................................................................................................................................26200.102000000000000000001000000010000000000000000000000000000000000000
...................................................................................................................................................AACAACAAAAGC-------------------------------------------AAC-----------------AACAA---C---------AAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24170.061000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---CAG-CAGCAGCA---------.................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AC---AACA---------------G---CAG-CAGCAGCA---------G------..........................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................C---AACA---------------G---CAG-CAGCAGCA---------G------CAG---------CAGC..........................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AA--CAAC---AACA---------------G---CAG-CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................AACAA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---CAG-CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AA--CAAC---AACA---------------G---CAG-CAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................ACAA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---CAG-CAGC..............................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................CAAC---AACA---------------G---CAG-CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................ACAAAAGC-------------------------------------------AAC-----------------AACAA---C---------AACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................C-------------------------------------------AAC-----------------AACAA---C---------AACAACAACAA-----------------------------------------------------------------------------------CAA--CAAC---.............................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AC---AACA---------------G---CAG-CAGCAGCA---------G------CAG---------CA............................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................................................CAA---C---------AACAACAACAA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---C.....................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AACA---------------G---CAG-CAGCAGCA---------G------CA........................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................AAC---AACA---------------G---CAG-CAGCAGCA---------G------CAG---------C.............................................................................................................................................................................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CAACAA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---CAG-CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................AACAAAAGC-------------------------------------------AAC-----------------AACAA---C---------AAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AACA---------------G---CAG-CAGCAGCA---------G------CAG---------CA............................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................AAC---AACA---------------G---CAG-CAGCAGCA---------G------..........................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CA---------------G---CAG-CAGCAGCA---------G------CAG---------C.............................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................AACAA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---CAG-CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................C---------AACAACAACAA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---CAG-C.................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CAA--CAAC---AACA---------------G---CAG-CAGCAGCA---------G------CAG---------C.............................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................A--CAAC---AACA---------------G---CAG-CAGCAGCA---------G------CA........................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................AAC---AACA---------------G---CAG-CAGCAGCA---------G------CAG---------CAGC..........................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................ACAACAA-----------------------------------------------------------------------------------CAA--CAAC---AACA---------------G---CAG-CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................C-----------------AACAA---C---------AACAACAACAA-----------------------------------------------------------------------------------CAA--CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000000100
droMoj3
CGCCTCCTCCTCAA---CGGCCACGGCGAACAGCAGC----------G-CC--------------------------------------------------------------------GGCTCGAGTTCCAGTTTCACGCGTCGACGACCGCCAGCGC-------------------------------------------CGC---TGCTAACG------------------------AACA------------ACAACATCAGCA--------------------------------TACACAGTGCGAGCAGCAACAACAACCACAACAACA-AC----------------------A---A---CAA-CTTCC----------------------------------------------------------------------------------------------------------------------TT----------------------------------AGTCAT--TTCCAAA---G-CGCTGAGCCCGTGTCT--------------------CTGT-----------------------TGTC----AA----------------------CGGGTCAG------------------------------------------------------------------------CCGCCCGC------------------CT--------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TTCCAAA---G-CGCTGAGCCCGTGTCT--------------------CT.........................................................................................................................................................................................2811.001000100
.............................................................................................................................................................................................................................................................................................................................AACAACAACCACAACAACA-AC----------------------A---A---CA....................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
................................................................................................................................................................................................................................................................................................................................AACAACCACAACAACA-AC----------------------A---A---CAA-C.................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
..........................................................................................................................................................................................................................................................................................................................AGCAACAACAACCACAACAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
TAATGCTGCTTTAT---CTGCTG-----------------------G----GCGCTGGGGC--------GGCTT----------------------------------------------ACAT----------AAGATGTGTCCACAGCTCTCTAGGC-------------------------------------------AGC-----------------AGCAG---C---------AGCTGTCCGACCAACAA-------------CAA------------------------------------------------------------------------------------------------CAA-CAG--------------A------CAG---------C---------------------ATC---------------------------------G-------------------------ACAG--------------------CAGCAGTTAAGCACGTGTTAT--TTTCTATGTA--TAC----------------------------------A---TGTGT--GTGT--------GTG----TGTGTGTGTG----------------TG------------------------------------------------------T---------------------------------------------------GT--------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
TACATCTGCCATGCCCGC-----------------------------G-GC-----------CATGTGGC-----------------------------------------------------------TGA--AATGTAAGTCT-----------------------------------------------------------TGG------------------------------------------------------------------------------------------------------------------------------------CGGCGGT------------CTCCAAAAA---AGCCAACGAAC---------A------TCC---------C------CA---CCAAACCAG-ACCGATGGAGAACCCAGACCCC-------------------------------------------------------------------------------------CATTCCT----A--TGC--------------------------------------TATGCGT------------GTG--TGTGTCTGTGTG----------------TG------------------------------------------------------C--CCAGCAATCCACTCAATCCGTTTCCG---TTTCC---------------TG--------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TACATCTGCCATGCCCGC-----------------------------G-GC-----------CATGTGGC-----------------------------------------------------------TGA--AATGTAAGTCT-----------------------------------------------------------TGG------------------------------------------------------------------------------------------------------------------------------------CGGCGGT------------CTCCAAAAA---AGCCAACGAAC---------A------TCC---------C------CA---CCAAACCAG-ACCGATGGAGAACCCAGACCCC-------------------------------------------------------------------------------------CATTCCT----A--TGC--------------------------------------TATGCGT------------GTG--TGTGTGTGT--------------------------GTG------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CACCACCGCCGTCT---GTGCCG-----------------------T----CTGTTTGTGTGCGTGTGCCCCA---------CAGTCCC---AGTT------------ACGAGG------------GT--------------------------------------------------------------------------GGT-----------------GGTGG---C---------AGTGGCCACAC-------------------AGCCCACTTGCAACCGTATCCGTA------TC--------------------------------------------------------------------CG-CAATCGCA---------A------TCG---------C------------------AAT-------------------------------------------------------------CGCATCCGTCAATGCAAACACCCGACA-------------------------------GT-GGCGAGTGTGCATCA--------------------CTAT--------------------T--TGTG----CG----------------------TGAGTGTG------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CACCACCACAGTCT---GTGCCG-----------------------T----CTGTTTGTGTGCGTGTGCCCCA---------CAGTCCT---AGTT------------ACGAGG------------GT--------------------------------------------------------------------------GGC-----------------GGCGG---C---------AGTGGCCACGC-------------------CACCCACTTGCAACCGTATCCGTA------TC--------------------------------------------------------------------CG-CAAT---------------------CG---------C------------------AAT-------------------------------------------------------------CGCATCCGTCAATGCAAACACCCGACA-------------------------------GT-GGCGAGTTTGCATCA--------------------CTAT--------------------T--TGTG----CG----------------------TGAGTGTG------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AATAGCAGCAACTT---C-----------------------------------------------------------------------------------------------------AGCACAG------C-----------------CTCC--------------------------------------------------------TCTGTG------------------------GGCA------------GCAGCATCAGCATT--------GG-----------------------------------------------------------CAGCAGCGGCAGCAGCAATAGCAACTC---CAA-CGAC---------------------------------------AG---CAACAGCAGCTCCGGCGGTGGACACAGTCTCAGCTTCAAGAGCAACG-------------------------------GACA--------------CG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--CAGACATGT--------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TATTGCCGACGCCT---TCGCCGCAGCT-GTTGTTGC----------CGCC----------------GAC-CG---------AGGTAGCAGC----AGCAGCAGTAGC--------AGCAGCA--------------------------------------------------------------------------------GA-----------AAC---------------------AGCA------------GCAACAGCAA--------------CA------------------TC--------------------------------------------AGTAGCAGC---A------G---CAG-CAACAT------------------------------CAACAGCAG---CAACAGCAACGC------------------------------------------------------------------------------------CAGCAGCAACAC--CAA------TTG-------------------TTA-----------------------TCGTTGTGGG--CGTTGTGGTTGCA----------------------------------------------------------------------------------------TCGCCTG-------------------TTG-------CCGCCGG----------C--------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CACCACCAGTGCCG---T---------------------------------CTGTTTGTGTGCGTGTGCCCCA---------CAGTCCC---AGTT------------ACGATA------------GT--------------------------------------------------------------------------GGT-----------------GGTGG---C---------A---CCACCGGCA---A-------------CACCCACTTGCAACCGTATCCGTA------TC--------------------------------------------------------------------CG-CAATCGTA---------T------CCG---------C------------------AAT-------------------------------------------------------------CGCATCCGCCAATGCAAACACCAGACA-------------------------------GT-GGCGAGTTTGCATCA--------------------CTAT--------------------T--TGTG----CG----------------------TGAGTGTG------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CCCTGCATCATCCG---CAGCTAT-------------TGGCCCAAA----------------GCTATTCCGTG---------CAGTTGC----------AGAAGCACC--------A---------GC--------------------------------------------------------------------------AATTGC--------AACAGCAGCAA---C---------AGCAACTGCAGCA--------------------------------ACAGCAAC---------------------------------TGCAACAGCA-GC----------------------A---G---CAA-CAGCA---------------------------------------------------ACAGC---------------------------------AGGTC---------------------------------------------CCGCAACAACTC--AGT------TTG--GAAT---------------ACTT--------------------TAGC-AATGG--CAATGTGGCGACT--TCCG----AG----------------------CAAGTGCCTCTGCCCTCGCCTTACCAGCGGGTGCCCCTGCCACATGGCTACTAC--------------------------CCA-------CT----------------GCCCAA--------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGTATGAACACTT---C----------------------------------------------------TAA---------CAGCAAC---AGG------------------------AACAGAAGG--------------------------------------------------------------------------AGC-----------------AGCAG---C---------A---------------G------CAGCAGC--------AGCAGCAGCAGCAGCA-----------------------------------------------------------------------G---CAA-CAGCAGCA---------A------CAG---------C------AG---CAACAGCAACATC---------------------------------AGCGA---------------------------------------------CGGCAGCTACGC-----------------------------GTTCAAGTGAAAATTCCGCAGCTGCTGCCCGCAC-TTCAT--GTAC--------GTA----TGTATGTACG----------------CA------------------------------------------------------CCA-------TCCACC--ATAGA---CTGCGAGTGTG---------------TG--------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCAG-CAGCGACAG---C-----------------------------------------------------------------AGCAGC-------GA------------------------------------------------------------------------------------------------------------------------C---------------------AGCAGCAACAT------------CAACAG-----CAACATCAACAACATCAGCA------AC--------------------------------------------------------------------AA-CAGCAGCA---------G------CGGCAGCAACACCGGCAACAG---CAACAGCAATACT---------------------------------A---------------------------------------------GCGACAGCAGCAACAC--CAG-CACCACCACG----A--CGC--------------------------------------TGTACAC------------GTG--CTCCAGCGC----CTCCTCGTCGCTGATTG------------------------------------------------------C--CCAG-------------------CCG-------CCGCCAA--CAAAGATAT--------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GGCTAGCAAAACCA---CAA----------------------------------------------------G---------CAGCAGC---------------------------AGCAGCAGCA-------------------------------------------------------------------------------------------GC---------------------AGCAGCAACAT------------CAACAGC--------GGCAACAGAAACAGCA-----------------------------------------------------------------------A---CAA-CAACAACAACCACAACAACAGCAGCGGCAGCAACACTAGCAAAAGCAGC---AA---TAAC---------------------------------A-------------------------------G--------------AAACAGCAGCAACAC--CAG-CACCACCACG----A--CGC--------------------------------------TGTACAC------------GTG--CTCCAGCGC----CTCCTCGTCGCTGATTG------------------------------------------------------C--CCAG-------------------CCG-------CCGCCAA--CAAAGATAT--------------------SizeHit CountTotal NormTotal
No Reads
dm3
CCACACCCCCTGGC---CGC-------------------------------CCATCCCCACTTGCATGTCCCGGTGGCAATGCATCCTC-------AAAT--------GCAGCATCAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGCAGCAG------------CAGCAGT--------TGCAGCAGGAGCAGCA-----------------------------------------------------------------------G---CAA-CAGGATCA---------G------CAG---------C------------------AGT-------------------------------------------------------------CACAGCAGGAGACACC------------------------TG---------------------CAACC----ATTG-----------------CTACCA-------------------------------------------------------------A----------------------------------------------------------------------------------------------------TG--------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................C-------AAAT--------GCAGCATCAGAAG------G--------------------------------------------------------------------------AG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000
..................................................................TGTCCCGGTGGCAATGCATCCTC-------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................AGCATCAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
................................................................................................AAAT--------GCAGCATCAGAAG------G--------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
......................................................................................................................AAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGCAGCAG------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2221.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TGTCCCGGTGGCAATGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................ACTTGCATGTCCCGGTGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................TGTCCCGGTGGCAATGCATCCTC-------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................T--------GCAGCATCAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................ATCAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................GCATCCTC-------AAAT--------GCAGCATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AGCAGT--------TGCAGCAGGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CAGCAG------------CAGCAGT--------TGCAGCAGGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................AGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................AAAT--------GCAGCATCAGAAG------G--------------------------------------------------------------------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................GC-------------------------------CCATCCCCACTTGCATGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................AGCA-----------------------------------------------------------------------G---CAA-CAGGATCA---------G------CAG---------C------------------...........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AA-CAGGATCA---------G------CAG---------C------------------AGT-------------------------------------------------------------CA.........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................AA-CAGGATCA---------G------CAG---------C------------------AGT-------------------------------------------------------------CACAGCA....................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................................TGTCCCGGTGGCAATGCATCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................GCAGCATCAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGCAGCAG------------CAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................GCATCAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................GCAGCAG------------CAGCAGT--------TGCAGCAGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................G---------C------------------AGT-------------------------------------------------------------CACAGCAGGAGACACC------------------------TG---------------------CAAC........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CAGCATCAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................CAGCAGT--------TGCAGCAGGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........CCTGGC---CGC-------------------------------CCATCCCCACTTGCATGTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TCCCGGTGGCAATGCATCCTC-------AAAT--------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TGCAGCAGGAGCAGCA-----------------------------------------------------------------------G---CAA-CA................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................TGCAGCAGGAGCAGCA-----------------------------------------------------------------------G---CAA-CAG...............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CAGGATCA---------G------CAG---------C------------------AGT-------------------------------------------------------------CACAG......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................................................................................................G------------CAGCAGT--------TGCAGCAGGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................AGCAGT--------TGCAGCAGGAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................ATCCTC-------AAAT--------GCAGCATCAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................AGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................AGCATCAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GCA-----------------------------------------------------------------------G---CAA-CAGGATCA---------G------CAG---------C------------------...........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................T--------GCAGCATCAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGCAGCAG------------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................T--------TGCAGCAGGAGCAGCA-----------------------------------------------------------------------G---CAA-CA................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................CTTGCATGTCCCGGTGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................GCAGCATCAGAAG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGT-------------------------------------------------------------CACAGCAGGAGACACC------------------------T..................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGT-------------------------------------------------------------CACAGCAGGAGACACC------------------------...................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------G---CAA-CAGGATCA---------G------CAG---------C------------------AGT-------------------------------------------------------------...........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................GCAGT--------TGCAGCAGGAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CAG------------CAGCAGT--------TGCAGCAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AC---------------------AGCAGCAGCAG------------CAGCAGT--------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................G------------CAGCAGT--------TGCAGCAGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GCAGCAGGAGCAGCA-----------------------------------------------------------------------G---CAA-CAG...............................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGCAGCAG------------CAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................CAGCAGGAGCAGCA-----------------------------------------------------------------------G---CAA-CA................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AA-CAGGATCA---------G------CAG---------C------------------AGG-------------------------------------------------------------...........................................................................................................................................................................................................................................................................................18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................AGCA-----------AC---------------------AGCAGCAGCAG------------CAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AGCAGCAGCAG------------CAGCAGT--------TGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AC---------------------AGCAGCAGCAG------------CAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................GCA-----------AC---------------------AGCAGCAGCAG------------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCAGCAGCAG------------CAGCAGT--------TGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CAGCAG------------CAGCAGT--------TGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AGCAG------------CAGCAGT--------TGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AC---------------------AGCAGCAGCAG------------CAGCAGT--------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................AG------G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGCAGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................................................................................................................................AGCA-----------AC---------------------AGCAGCAGCAG------------CAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................G--------------------------------------------------------------------------AGCA-----------AC---------------------AGCAGCAGCAG------------CAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AGCA-----------AC---------------------AGCAGCAGCAG------------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................................................................A-----------AC---------------------AGCAGCAGCAG------------CAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................CA-----------AC---------------------AGCAGCAGCAG------------CAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................C---------------------AGCAGCAGCAG------------CAGCAGT--------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droSim2
CCCAACAACAGCAG---C-----------------------------------------------------------------------------------------------------AACAAAA------C-----------------A--------TTCTGCGGGTTGGTCGGAGTCCAGTCAATCGCAGCTTTCCACC---------------GC---------------------AGCA------------GCAACATCAGCAGC--------AG-----------------------------------------------------------CAGCAGC------------AGCAGCAA---CAA-CAGCAGCA---------A------CAA---------C------------------AAC-------------------------------------------------------------CACATCAACAGATACC------------------------AA---------------------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGGAGCAATCCCTGTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................AGCAGC------------AGCAGCAA---CAA-CAGCAGCA---------.................................................................................................................................................................................................................................................................................................................................................................................................25200.10200000000000200000
......................................................................................................................................................................................................................................................................................AG-----------------------------------------------------------CAGCAGC------------AGCAGCAA---CAA-CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000001000000
...................................................................................................................................................................................................................................................................ACATCAGCAGC--------AG-----------------------------------------------------------CAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000001000000000
........................................................................................................................................................................................................................................................................AGCAGC--------AG-----------------------------------------------------------CAGCAGC------------AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................AGC------------AGCAGCAA---CAA-CAGCAGCA---------.................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000000100000
droSec2
CCCCAACAACAGCA---GC----------------------------------------------------------------------------------------------------AACAAAA------C-----------------A--------TACTGCGGGTTGGTCGGAGTCCAGTCAATCGCAGCTTTCCACC---------------GC---------------------AGCA------------GCAACATCAGCA--------------------------------GCAG-----------------------------------CAGCAGC------------AGCAGCAGCAACAA-CAGCAGCA---------A------CAA---------C------------------AAC-------------------------------------------------------------CACATCAACAGGTACC------------------------AA---------------------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGGAGCAATCCCTGTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACC------------------------AA---------------------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGGAGCAATCCC.....2311.0010010
...........................................................................................................................................................................................................................................................................................................................................................................CAGCAACAA-CAGCAGCA---------A------..........................................................................................................................................................................................................................................................................................................................................................................................18200.1020020
....................................................................................................................................................................................................................................................................CATCAGCA--------------------------------GCAG-----------------------------------CAGCAGC------------AGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................24160.0610001
.................................................................................................................................................................................................................................................................CAACATCAGCA--------------------------------GCAG-----------------------------------CAGCAGC------------A................................................................................................................................................................................................................................................................................................................................................................................................................................23160.0611000
......................................................................................................................................................................................................................................................................TCAGCA--------------------------------GCAG-----------------------------------CAGCAGC------------AGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................23190.0510010
.....................................................................................................................................................................................................................................................................................................................................................GCAGC------------AGCAGCAGCAACAA-CAGC..............................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010
.....................................................................................................................................................................................................................................................................ATCAGCA--------------------------------GCAG-----------------------------------CAGCAGC------------AGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510001
........................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAA-CAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................18200.0510010
..........................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAA-CAGCAGCA---------.................................................................................................................................................................................................................................................................................................................................................................................................18200.0510010
droYak3
CTACTGCTGATGCT---CGCCTCT-------------CGGACCATA----------------AATATCGCACATGAGTGTTGCAT--GC-------GACG--------------------------GC----------------------------------------------------------------------------------------------AGCAGCAACAGCAACAACAACAGCAACAG------------CAA-----------------------CAACA------AC------------------------AGCAACAGCA-GC----------------------A---G---CAA-CACCA---------------------------------TCAGCAGTAGC---AA---TATT---------------------------------A-------------------------------C------------------AGTTTG----------------------AAT---------------GCCA--------------------CTAT-TATGC--CAAC--------TTG----TGAATG----------------------CAAGTGCG----------------------------------------------------------------------------------------G--CA-----AA--------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................CAACAGCA-GC----------------------A---G---CAA-CACC..............................................................................................................................................................................................................................................................................................................................................................................................................19190.05101000000000
.......................................................................................................................................................................................................................................AGCAACAACAACAGCAACAG------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
.......................................................................................................................................................................................................................................................................CAA-----------------------CAACA------AC------------------------AGCAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
.........................................................................................................................................................................................................................................................AG------------CAA-----------------------CAACA------AC------------------------AGCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
.........................................................................................................................................................................................................................................CAACAACAACAGCAACAG------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
............................................................................................................................................................................................................................................CAACAACAGCAACAG------------CAA-----------------------CAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
....................................................................................................................................................................................................................................................................................................CA------AC------------------------AGCAACAGCA-GC----------------------A---G---CAA-..................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
droEre2
CAGCAACAGC--------------------------------------------------------------------------------------AACA--------GC---------AGCTCC-------------------------------------------------------------------------------------------------AGC---------------ACCA------------GCAACATTAACAT-----------------CAAC-GCAGCAACAGC--------------------------------------------AGGAGCAGC---A------G---CAG-CAGTAG------------------------------CAGCCGCAGCAGC---AA---CATC---------------------------------A-------------------------------C----C--------G---CAACAGCAA-----------------------------CAGCTTCGAGTCG--------------------C-G--T------------------G--TGTGCGTGCATGTGAG--------------G-------------------------------------------------------------------------------TTGTG-------TTGGCAA---------CT--------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................GCAGCAACAGC--------------------------------------------AGGAGCAGC---.................................................................................................................................................................................................................................................................................................................................................................................................................................2060.1710100000

Generated: 05/18/2015 at 07:19 AM