ID:

dwi_3502

 Coordinate:

scf2_1100000004943:14092182-14092332 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.2 -4.0 -3.8 -3.8

Flybase annnotation

exon [dwil_GLEANR_13220:3]; CDS [Dwil\GK12883-cds]; intron [Dwil\GK12883-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-
Gypsy8-I_Dpse-intLTRGypsy-
mature
star
  1. scf2_1100000004776:18565-18587 -
  2. scf2_1100000004822:3471937-3471959 -
  3. scf2_1100000004830:122872-122894 -
  4. scf2_1100000004830:159934-159956 +
  5. scf2_1100000004943:11594595-11594617 +
  6. scf2_1100000004943:11916169-11916191 +
  7. dwi_3502  scf2_1100000004943:14092225-14092247 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCACACATCCAGCGGACCCAATCAAACATCAACGCCAAAGCAGCGCGAAGGTACGACAAACCAGAATAATCCTAGTTCCAACAACACAGCCACCAGCAACAGCAACAGCAACAACAACAACACTGCCAGCCACCAACAGCAGCAACAACAGCAACAGCAGCAGCAGCAGCAACAACCAAACACAAATAGCAATGCCTCCTCCGCCTCCGCATCCACCTCCGGCTCAGCATCGGCCACCTCGAATGGCCTGT
*************************************************************************.((............((...........((....((...............))..))...........)).............))********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body		 V119
head
.........................................................................AGTTCCAACAACACAGCCACCAGCAACA...................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
..........................CATCAACGCCAAAGCAGC............................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................................CACCTCCGGCTCAGCATCGGCCACCTCG.......... 28 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................................ACCTCCGGCTCAGCATCGGC................. 20 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................................ATCCACCTCCGGCTCAGC....................... 18 0 1 1.00 1 1 0 0 0
.......................................................................................................................................ACAGCAGCAACAACAGCAACAGC............................................................................................. 23 0 7 0.14 1 1 0 0 0
............................................................................................................................................................................................................................GGTTCAGCATCGGCCTCATCG.......... 21 3 8 0.13 1 0 1 0 0
...................................................................................................CAGCAACAGCAACAAATACAACCCT............................................................................................................................... 25 3 18 0.06 1 0 1 0 0
.......................................................................................................................................................CAACAGCAGCAGCAGCAGCAACA............................................................................. 23 0 20 0.05 1 0 0 0 1
.................................................................................................AACAGCAACAGCAACAACAAC..................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
................................................................................................................................................ACAACAGCAACAGCAGCAGCAGC.................................................................................... 23 0 20 0.05 1 1 0 0 0
.............................................................................................................................................GCAACAACAGCAACAGCAGCAGC....................................................................................... 23 0 20 0.05 1 0 0 1 0
..............................................................................................................................................CAACAACAGCAACAGCAGCAGCAG..................................................................................... 24 0 20 0.05 1 0 1 0 0
...............................................................................................................................................AACAACAGCAACAGCAGCAGC....................................................................................... 21 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

GGTGTGTAGGTCGCCTGGGTTAGTTTGTAGTTGCGGTTTCGTCGCGCTTCCATGCTGTTTGGTCTTATTAGGATCAAGGTTGTTGTGTCGGTGGTCGTTGTCGTTGTCGTTGTTGTTGTTGTGACGGTCGGTGGTTGTCGTCGTTGTTGTCGTTGTCGTCGTCGTCGTCGTTGTTGGTTTGTGTTTATCGTTACGGAGGAGGCGGAGGCGTAGGTGGAGGCCGAGTCGTAGCCGGTGGAGCTTACCGGACA
*********************************************************************************************.((............((...........((....((...............))..))...........)).............))************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M045
female body
 V119
head
 V118
embryo
..................................................................................................................................................................................................GGAGCAGGCGGAGGCGTAGG..................................... 20 1 1 1.00 1 1 0 0 0
....................................................................................................................TGTTGTGACGGTCGATGGTTT.................................................................................................................. 21 2 1 1.00 1 1 0 0 0
....TGTCGGTCTCCCGGGTTAGTTT................................................................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0
...........................................................................................................................................GTCGTTGTTGTCGTTGTCGT............................................................................................ 20 0 20 0.35 7 0 7 0 0
...............................................................................................................................................................................................TTCGGAGGAGGCGGAGGCG......................................... 19 1 3 0.33 1 1 0 0 0
......................................................................................................................................................................................................................AGGAGGCCGGGTCGTAGCCGC................ 21 3 3 0.33 1 1 0 0 0
.....................................................................................................................................................................................................GGAGGCGGAGGCGAAGGTGGAG................................ 22 1 4 0.25 1 0 1 0 0
...........................................................................................................................................GTCGTTGTTGTCGTTGTCGTCGT......................................................................................... 23 0 20 0.25 5 0 5 0 0
......................................................................................................................................................................................................................TGGTGGACGAGTCGTAGC................... 18 2 6 0.17 1 1 0 0 0
......................GATTGCAGTTGCGGTTTCGTCT............................................................................................................................................................................................................... 22 3 6 0.17 1 0 1 0 0
..............................................................................................................................................GTTGTTGTCGTTGTCGTCGT......................................................................................... 20 0 20 0.15 3 0 3 0 0
.............................................................................................................GTGTTGTTGGTGTGACGGT........................................................................................................................... 19 2 10 0.10 1 0 0 1 0
........................................................................................................................................GTCGTCGTTGTTGTCGTTGTCGT............................................................................................ 23 0 20 0.10 2 0 2 0 0
.......................................................................................................................................................GTTGTCGTCGTCGTCGTCGTTGT............................................................................. 23 0 20 0.10 2 0 2 0 0
.................................................................................................................................................GTTGTCGTTGTCGTCGTCGT...................................................................................... 20 0 20 0.10 2 0 0 0 2
.............................................................................................................TTGTTCTTGGTGTGACGGT........................................................................................................................... 19 2 12 0.08 1 0 0 1 0
...........................................................................................................................................................TCGGCGTCGTCGGCGTTGTTGGT......................................................................... 23 2 19 0.05 1 0 1 0 0
.............................................................................................................................................................GTCGTCGTCGTCGTTGTTGG.......................................................................... 20 0 20 0.05 1 0 1 0 0
....................................................................................................................................................GTCGTTGTCGTCGTCGTCGT................................................................................... 20 0 20 0.05 1 0 1 0 0
.............................................................................GATTGTTGAGTCGGTGGGC........................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1
................................................................................................................................CGGTGGTTGTCGGGGTTGTAG...................................................................................................... 21 3 20 0.05 1 1 0 0 0
..........................................................................................................................................CGTCGTTGTTGTCGTTGTCGTCGT......................................................................................... 24 0 20 0.05 1 0 1 0 0
.........................................................................................................................................TCGTCGTTGTTGTCGTTGTCGTCG.......................................................................................... 24 0 20 0.05 1 0 1 0 0
....TGTCGGTCTCCCGGGTTAG.................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0
...............................................................................................................................................TTGTTGTCGTTGTCGTCGTCGT...................................................................................... 22 0 20 0.05 1 0 1 0 0
............................................................................AGGTCGTGTTGTCGGTGGTC........................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0
...........AGCCTGGGTCAGTTTTTAG............................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004943:14092132-14092382 - dwi_3502 CCACACATCCAGC---GGACCCAATCAAACATCAACGCCAAAGCAGCGCGAAGGTACGACAAACCAGAATAATCC------T---------------AGTTCCAACAACA-------------------CAGCCACCA---------GCAACAGCAACAGCAACAACAACAACACTGCCAGCCACCAACAGCAGCAACAACAG---CAACAGCAGC-----------AG-----------CAGCAGCA---ACAAC-CAAACACAAATA---GCAATGCCTCCTC------CGCCTCCGCATCCAC------------------C---------------------TCCGGCTCAGCATC------GGCCACCTCGAATGGCCTGT
droVir3 scaffold_13047:10015788-10016014 - GCATGCGGCCAGCGCTGGACCGGCGCAATCGTCTGCGCCCAAGCAGCGCGAAGGTAGTACTAACAACAACAACAA------T------AATACAAATAGCTCAAATAGCAGCAGCAACGGCAGCAGCGCCGGCAACCAAGCG---CCG------------------CAGCAG-------------CAGCAGCAGCAACAGCA---GCAGCAGCAGC-----------AGC------AAAGCAA---------------------CAACA---GCAATGCCTCCTCA---TCCGC---------------------------------------------------------CTCCG---C------CTCAACGTCGAACGGCCTAT
droMoj3 scaffold_6540:9345169-9345410 + dmo_1876 GCACGCGGGCAGCGCCGGACCGGCCCAATCCTCGGCGCCCAAGCAGCGTGAAGGTACGAACAATACGAATAGCTC------A---------------AATAGCAGCAGCA---------------GCAGCGGCAGTCAAGCGACGTCGCAGCAGCAGCAGCAGCAGCAGCAG-------------CAACAGCAGCAGCAGCAACAGCAGCAGCAGC-----------AGC------AAAAT---------------------AGCAACA---GCAATGCCTCCTCCTCAACCGC------CTCCGC------------------CTCA---------------------GTGTCCGCATC---------GACGTCGAACGGCCTGT
droGri2 scaffold_14906:7439581-7439822 + GCATGCCGGCAGCGCTGGACCCGCCCAATCCTCGGCGCCCAAGCAGCGCGAAGGTAGTACTAACAACAACAACAA------CACCAACAATACAAATAGCTCAAATAGCAGCAGT------A---GCAGCGCCAATCAAGCG---CCG------------------CAGCAG-------------CAGCAGCAGCAACAACAG---CAGCAGCAAC-----------AGC------AGAATAGCA------ACAACAACAACAACAACAACAGCAATGCCTCCTCA---TCCGC---------------------------------------------------------ATCCGCATC---------GACATCGAATGGACTAT
dp5 2:13076557-13076761 + dps_514 ----------AGC---GGACCCGCCCCCACATCAGCGCCCAAGCAGCGCGAAGGTACTAACAGCAATAACAAT------------------------AGCTCCAACTCCA------------------GCAGCAGCCA---------GCAGCAGCAGCAGCAGCAACAGCA----------------------------------GCA---GCAGC-----------AGC------AGGGCGGCA------GCAGCAATCCCAACAACA---GCAATGCCTCCTCCTCCGCCTCCGCC------------------------------------------------TCAGCCTCCGCGGC------CACCTCCTCGAACGGGCTGT
droPer2 scaffold_0:7377536-7377743 - ----------AGC---GGACCCGCCCCCACATCAGCGCCCAAGCAGCGCGAAGGTACTAACAGCAATAACAAT------------------------AGCTCCAACTCCA------------------GCAGCAGCCA---------GCAGCAGCAGCAGCAACAGCA-------------------------------------GCA---GCAGC-----------AGC------AGGGCGGCAGCA------GCAATCCGAACAACA---GCAATGCCTCCTCCTC------CGCC---------------------------------TCCGCCTCCGCC---TCAGCCTCCGCGGC------CACCTCCTCGAACGGGCTGT
droAna3 scaffold_13340:21447823-21448069 - ----------ACC---GGACCCACCCAGTCCTCGGCGCCGAAACAACGCGAAGGTACTAGC------TCTAATCCCAGCTCC---------------AACTCCAACTCCA------------------CCAGCAGCCA---------ACAGCAGCAGCAGCAACAGCAGCAG-------------CA------------------------GCAGCAACAGAGCAGCGG--------GAGCAGCAGCAACAGCAACAACACCACCAGCA---GCAACAACTCCGCCTCGTCCGCCGCAGCAGCAGC------------------CGC--T----GCCGCCGCCGCCGCCGCATCCGCGAA------TACGTCCTCCAATGGACTGT
droBip1 scf7180000396413:1088896-1089128 + ---------CAGC---GGGCCCACCCAGTCCTCGGCGCCGAAACAACGCGAAGGTACTAGC------TCTAATCCCAGCTCC---------------AGCTCCAACTCCA------------------CCAGCAGCCA---------ACAGCAGCAGCAGCAGCAACAGCA----------------------------------GCA---GCAGCAACAGAGTAGCGG--------GAGCAGCAGCAACAGCAACACCA---CCAGCA---GCAACAACTCCGCCTCCTCCGCC---GCAGCAG---------------------------------CCGTAGCCGCCGCGTCCGCGAA------TACCTCCTCCAATGGACTGT
droKik1 scf7180000302313:563376-563641 + ---------CAGC---GGACCCAGCCAGAGTTCGGCGCCCAAGCAGCGCGAAGGTACTACC------ACTAATCC------C---------------AGCTCCAACTCCA------------------GTAGCAGCCA---------GCAGCAGCAGCAACAGTCGCAGCAG-------------CAATCGCAGCAACA------GCA---GCAGC-----------AGC------AGGGCAGCAGCAACAGTAACAACAACGCCAGCA---GTAACTCCTCCGCCTCATCCGCCGCCGCAGCAGCAGCAGCAGCTGCCGCCGCCTCCCTGTCCGCCTCTGCA---GCCG---CCGCAGC------CACGTCCTCGAACGGTTTGT
droFic1 scf7180000454106:590014-590238 + G--------CGGC---GGCGCCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACGAGCAGCACCACTAATTC------C---------------AGCTCCAACTCCA---------------CCAGCAGCAGTCA---------GCAGCAGCAGCAACAGCAGCAGCAG-------------CAG------------------CAACAGCAGC-----------AGC------AGAGCAGCAGCAGCAGCAACAACACCGCCAGCA---GCAACACCTCCGCCTCCGCATCCGC---A---------------------------------------------GCAGCCTCCGCGTC------CACATCCTCCAACGGACTGT
droEle1 scf7180000491212:1861283-1861530 + ---------CAGC---GGCGCCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATTC------C---------------AGCTCCAACTCCA---------------CCAGCAGCAGTCA---------GCAGCAGCAGCAACAGCAGCA-------------------------------------GCA---GCAGC-----------AGC------AGAGTAACAGCAACAGCAACACCAACGCCAGCA---GCAACACATCCGCCTCGTCCGCCGCAGCAGCAGC------------------TTCTTTGTCCGCCGCCGCTGCAGCCGCCTCCGCAGCG-AG--TCAATCCTCGAACGGATTGT
droRho1 scf7180000779418:41163-41410 + ---------CAGC---GGCACCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATTC------C---------------AGCTCCAACTCCA------------------GCAGCAGTCA---------GCAGCAGCAGCAACAGCAGC-------------------AACAGCA------------GCA---GCAGC-----------AAC------AGAGCAGCAGCAACAGCAACACCACCGCCAGCA---GCAACACCTCCGCCTCGTCCGCCGCAGCAGCAGC------------------ATCCCTGTCCGCCGCCGCTGCCGCCGCCTCCGCAGC------CACATCCTCGAACGGACTGT
droBia1 scf7180000302402:6670262-6670515 - ---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACCACCAGCACCACTAATTC------C---------------AGCTCCAACTCCA---------------CCAGCAGCAGTCA---------GCAGCAGCAACAGCAGCAGCAGCAA-------------CAACA---------------GCA---GCAGC-----------AGC------AGAGCAACAGCAACAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCATCCGCCGCAGCAGC------------------CTCCCTGTCCGCCGCCGCAGCCGCCGCCTCCGCAGC------TACATCCTCGAACGGACTGT
droTak1 scf7180000415711:1716506-1716762 - ---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATTC------C---------------AGCTCCAACTCCA------------------GCAGCAGTCA---------GCAGCAGCAGCAACAGCAGCAGCAG-------------CAACAACAGCA---------GCA---GCAGC-----------AAC------AGAGCAGCAGCAACAGCAACACCACCGCCAGCA---GCAACACCTCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCTCTTTCAGCCGCTGCTGCCGCCGCCTCCGCAGC------CACCTCCTCGAACGGACTGT
droEug1 scf7180000409490:745824-746095 + ---------CAGC---GGCACCACCCACACATCGACGCCCAAGCAGCGAGAAGGTACAACCAGCACCACTAATTC------C---------------AGCTCCAACTCCA------------------GCAGTAGTCA---------ACAGCAGCAGCAGCAGCAGCAGCAA-------------CAACAACAGCAGCAGCAG---CAACAGCAGC-----------AGCAGCAACATAACAGCAGCAATAGCAACACCAATGCCAGCA---GCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCTTTGTCCGCCGCCGCAGCAGCCGCCTCCGCAGC------CACATCCTCGAACGGTCTGT
dm3 chr3R:3992889-3993133 - ---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCACCACTAATTC------C---------------AGCTCCAACTCTA------------------GCAGCAGTCA---------GCAGCAGCAACAACAGCAGC-------------------AACAGCAGCAGCAGCA---------GCAAC-----------AGC------AAAGTAG------CAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCCCTGTCTGCCGCCGTA---GCCGCCTCGGCAGC------CACATCCTCGAACGGACTGT
droSim2 3r:16974545-16974787 + ---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCACCACTAATTC------C---------------AGCTCCAACTCTA------------------GCAGCAGTCA---------GCAGCAGCAGCAGCAACAACAGCAG-------------CAACAGCAGCAGCAGCAG---CAACAGCAGC-----------AGC------AAAGTAG------CAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCCCTGTCCGC---------------------GCC-CAAAACATCTG-CTGAAGGTTGCGG
droSec2 scaffold_0:17835415-17835671 + ---------CAGC---GGCACCACCCACACGTCGACGCCTAAGCAGCGCGAAGGTACAGCCAGCACCACTAATTC------C---------------AGCTCCAACTCTA------------------GCAGCAGTCA---------GCAGCAGCAGCAGCAACAACAGCAG-------------CAACAGCAGCAGCAGCAG---CAACAGCAGC-----------AGC------AAAGTAG------CAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCCCTGTCCGCCGCCGTA---GCCGCCTCCGCAGC------CACATCCTCGAACGGACTGT
droYak3 3R:8065852-8066108 - ---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCACCACTAATTC------C---------------AGCTCCAACTCTA------------------GCAGCAGTCA---------GCACCAGCAGCAGCAACAACAGCAG-------------CAACAGCAGCAGCAGCAG---CAACAGCAGC-----------AGC------AGAGTAA------CAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------ATCCCTGTCCGCCGCCGTA---GCCGCCTCCGCAGC------CACATCCTCGAACGGATTGT
droEre2 scaffold_4770:17587552-17587808 + der_665 ---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCTCCACTAATTC------C---------------AGCTCCAACTCTA------------------GCAGCAGTCA---------GCAGCAGCAGCAGCAGCAGCAACAG-------------CAGCAACAGCAGCAGCAA---CAGCAGCAGC-----------AGC------AGAGTAG------CAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCCGCCGCCGCAGCAGC------------------ATCCCTGTCCGCCGCCGTA---GCCGCCTCCGCAGC------CACATCCTCGAACGGATTGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CCACACATCCAGC---GGACCCAATCAAACATCAACGCCAAAGCAGCGCGAAGGTACGACAAACCAGAATAATCC------T---------------AGTTCCAACAACA-------------------CAGCCACCA---------GCAACAGCAACAGCAACAACAACAACACTGCCAGCCACCAACAGCAGCAACAACAG---CAACAGCAGC-----------AG-----------CAGCAGCA---ACAAC-CAAACACAAATA---GCAATGCCTCCTC------CGCCTCCGCATCCAC------------------C---------------------TCCGGCTCAGCATC------GGCCACCTCGAATGGCCTGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................AGTTCCAACAACA-------------------CAGCCACCA---------GCAACA.........................................................................................................................................................................................................................................2811.00100010
.............................CATCAACGCCAAAGCAGC...................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................................................................................................................................................................................................................................................................................................CAC------------------C---------------------TCCGGCTCAGCATC------GGCCACCTCG..........2811.00100010
................................................................................................................................................................................................................................................................................................................AC------------------C---------------------TCCGGCTCAGCATC------GGC.................2011.00100010
............................................................................................................................................................................................................................................................................................................ATCCAC------------------C---------------------TCCGGCTCAGC.............................1811.00100010
...........................................................................................................................................................................................ACAGCAGCAACAACAG---CAACAGC.............................................................................................................................................................................2370.14100010
..............................................................................................................................................................................................................CAACAGCAGC-----------AG-----------CAGCAGCA---ACA....................................................................................................................................23200.05100001
.....................................................................................................................................................AACAGCAACAGCAACAACAAC........................................................................................................................................................................................................................21200.05100010
....................................................................................................................................................................................................ACAACAG---CAACAGCAGC-----------AG-----------CAGC..............................................................................................................................................23200.05100010
.................................................................................................................................................................................................GCAACAACAG---CAACAGCAGC-----------AG-----------C.................................................................................................................................................23200.05100100
..................................................................................................................................................................................................CAACAACAG---CAACAGCAGC-----------AG-----------CAG...............................................................................................................................................24200.05101000
...................................................................................................................................................................................................AACAACAG---CAACAGCAGC-----------AG-----------C.................................................................................................................................................21200.05100010
droVir3
GCATGCGGCCAGCGCTGGACCGGCGCAATCGTCTGCGCCCAAGCAGCGCGAAGGTAGTACTAACAACAACAACAA------T------AATACAAATAGCTCAAATAGCAGCAGCAACGGCAGCAGCGCCGGCAACCAAGCG---CCG------------------CAGCAG-------------CAGCAGCAGCAACAGCA---GCAGCAGCAGC-----------AGC------AAAGCAA---------------------CAACA---GCAATGCCTCCTCA---TCCGC---------------------------------------------------------CTCCG---C------CTCAACGTCGAACGGCCTATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................CAACAACAACAA------T------AATACAAATAGCT.............................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000000000000000000000000000000000002000
...................................................................AACAACAA------T------AATACAAATAGCC.............................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AACCAAGCG---CCG------------------CAGCAG-------------CAGCA....................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................GCAGCAACGGCAGCAGCGCCG...............................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................CG---CCG------------------CAGCAG-------------CAGCAGCAGCAACA...........................................................................................................................................................................................2580.131001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................G-------------CAGCAGCAGCAACAGCA---GCA..................................................................................................................................................................................21200.102000000000000000000000000000020000000000000000000000000000000000
.............................................................................................................................................G---CCG------------------CAGCAG-------------CAGCAGCAGCAAC............................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AGCAGCAACAGCA---GCAGCAGCA............................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AACAGCA---GCAGCAGCAGC-----------AGC------A.....................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................CAGCAG-------------CAGCAGCAGCAACA...........................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................AACAGCA---GCAGCAGCAGC-----------AGC------......................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................ACAGCA---GCAGCAGCAGC-----------AGC------......................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
GCACGCGGGCAGCGCCGGACCGGCCCAATCCTCGGCGCCCAAGCAGCGTGAAGGTACGAACAATACGAATAGCTC------A---------------AATAGCAGCAGCA---------------GCAGCGGCAGTCAAGCGACGTCGCAGCAGCAGCAGCAGCAGCAGCAG-------------CAACAGCAGCAGCAGCAACAGCAGCAGCAGC-----------AGC------AAAAT---------------------AGCAACA---GCAATGCCTCCTCCTCAACCGC------CTCCGC------------------CTCA---------------------GTGTCCGCATC---------GACGTCGAACGGCCTGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................AGCAACA---GCAATGCCTCCTCC....................................................................................................2111.001000010
...........................................................................................................................................................................G-------------CAACAGCAGCAGCAGCAA.......................................................................................................................................................................................19200.051010000
...................................................................................................................................................................CAGCAGCAG-------------CAACAGCAGCAGCAGCA........................................................................................................................................................................................26200.051100000
..................................................................................................................................................CGCAGCAGCAGCAGCAGCAGCAGC........................................................................................................................................................................................................................24200.051100000
droGri2
GCATGCCGGCAGCGCTGGACCCGCCCAATCCTCGGCGCCCAAGCAGCGCGAAGGTAGTACTAACAACAACAACAA------CACCAACAATACAAATAGCTCAAATAGCAGCAGT------A---GCAGCGCCAATCAAGCG---CCG------------------CAGCAG-------------CAGCAGCAGCAACAACAG---CAGCAGCAAC-----------AGC------AGAATAGCA------ACAACAACAACAACAACAACAGCAATGCCTCCTCA---TCCGC---------------------------------------------------------ATCCGCATC---------GACATCGAATGGACTATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................CAGCAGCAGCAACAACAG---CAGCA...............................................................................................................................................................................23200.10220
................................................................................................................................................................................................AGCAACAACAG---CAGCAGCAAC-----------AGC------......................................................................................................................................................24200.10220
................................................................................................................................................................................................AGCAACAACAG---CAGCAGCAAC-----------A..............................................................................................................................................................22200.05110
..............................................................................................................................................................................................GCAGCAACAACAG---CAGCAGCAAC-----------A..............................................................................................................................................................24200.05110
........................................................................................................................................................................GCAG-------------CAGCAGCAGCAACAACAG---CA..................................................................................................................................................................................24200.05110
................................................................................................................................................................................................AGCAACAACAG---CAGCAGCAAC-----------...............................................................................................................................................................21200.05110
dp5
----------AGC---GGACCCGCCCCCACATCAGCGCCCAAGCAGCGCGAAGGTACTAACAGCAATAACAAT------------------------AGCTCCAACTCCA------------------GCAGCAGCCA---------GCAGCAGCAGCAGCAGCAACAGCA----------------------------------GCA---GCAGC-----------AGC------AGGGCGGCA------GCAGCAATCCCAACAACA---GCAATGCCTCCTCCTCCGCCTCCGCC------------------------------------------------TCAGCCTCCGCGGC------CACCTCCTCGAACGGGCTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................AGCA----------------------------------GCA---GCAGC-----------AGC------AGGGCG................................................................................................................................................2131.3340000101020
..........................................................AACAGCAATAACAAT------------------------AGCTCCAACTCC.....................................................................................................................................................................................................................................................................................2711.0010010000000
................................................................AATAACAAT------------------------AGCTCCAACTCCA------------------GCAGC.............................................................................................................................................................................................................................................................2711.0010010000000
....................................................GGTACTAACAGCAATAACAAT------------------------AGCTCC...........................................................................................................................................................................................................................................................................................2711.0010010000000
...............................................................................................................................................................GCAGCAACAGCA----------------------------------GCA---GCAGC-----------AGC------AGGG..................................................................................................................................................2720.5010100000000
.................................................................................................................................................................AGCAACAGCA----------------------------------GCA---GCAGC-----------AGC------AGGGC.................................................................................................................................................2620.5010000100000
..........................................................................................................................................................CAGCAGCAGCAACAGCA----------------------------------GCA---GCA............................................................................................................................................................................23200.1530200100000
..................................................................................................................................................................GCAACAGCA----------------------------------GCA---GCAGC-----------AG.............................................................................................................................................................19200.1020200000000
...............................................................................................................................................................GCAGCAACAGCA----------------------------------GCA---GCAGC-----------AGC------AGG...................................................................................................................................................26140.0710100000000
...................................................................................................................................................................CAACAGCA----------------------------------GCA---GCAGC-----------AGC------......................................................................................................................................................19200.0510000100000
.........................................................................................................................................................GCAGCAGCAGCAACAGCA----------------------------------GCA---...............................................................................................................................................................................21200.0510000000001
......................................................................................................................................GCCA---------GCAGCAGCAGCAGCAGC..............................................................................................................................................................................................................................21200.0510100000000
......................................................................................................................................GCCA---------GCAGCAGCAGCAGCA................................................................................................................................................................................................................................19200.0510100000000
.............................................................................................................................................................CAGCAGCAACAGCA----------------------------------GCA---GCAG...........................................................................................................................................................................21200.0510100000000
droPer2
----------AGC---GGACCCGCCCCCACATCAGCGCCCAAGCAGCGCGAAGGTACTAACAGCAATAACAAT------------------------AGCTCCAACTCCA------------------GCAGCAGCCA---------GCAGCAGCAGCAGCAACAGCA-------------------------------------GCA---GCAGC-----------AGC------AGGGCGGCAGCA------GCAATCCGAACAACA---GCAATGCCTCCTCCTC------CGCC---------------------------------TCCGCCTCCGCC---TCAGCCTCCGCGGC------CACCTCCTCGAACGGGCTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................CACCTCCTCGAACGGGCC..1811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................GGC------CACCTCCTCGAACGGGC...2011.001100000
...................................................................................................................................................................CAGCA-------------------------------------GCA---GCAGC-----------AGC------AGGGC.................................................................................................................................................21110.091100000
droAna3
----------ACC---GGACCCACCCAGTCCTCGGCGCCGAAACAACGCGAAGGTACTAGC------TCTAATCCCAGCTCC---------------AACTCCAACTCCA------------------CCAGCAGCCA---------ACAGCAGCAGCAGCAACAGCAGCAG-------------CA------------------------GCAGCAACAGAGCAGCGG--------GAGCAGCAGCAACAGCAACAACACCACCAGCA---GCAACAACTCCGCCTCGTCCGCCGCAGCAGCAGC------------------CGC--T----GCCGCCGCCGCCGCCGCATCCGCGAA------TACGTCCTCCAATGGACTGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................AACAGAGCAGCGG--------GAGCAGCAGC...........................................................................................................................................2311.001010000
...................................................................................................................................................................................................................GCAGCAACAGAGCAGCGG--------GAGCAGC..............................................................................................................................................2511.001010000
...........................................................................................................................................................................G-------------CA------------------------GCAGCAACAGAGCAGCGG--------GA...................................................................................................................................................2311.001010000
.....................................................................................................................................................................................................................................................................................AACTCCGCCTCGTCCGCCGCAGCA.....................................................................................2411.001010000
.................................................................................................................................................................................................................................................................................CAACAACTCCGCCTCGTCCGC............................................................................................2111.001001000
...................................................................................................................................................................................................................................................................................ACAACTCCGCCTCGTCCGCC...........................................................................................2011.001010000
................................................................................................................................................................................................................................AGCGG--------GAGCAGCAGCAACAGC.....................................................................................................................................2111.001010000
................................................................................................................................................................................................................................................................................GCAACAACTCCGCCTCGTCCGCC...........................................................................................2311.001010000
.................................................................................................................................................................................................................................................AGCAGCAACAGCAACAACACCACCAGC......................................................................................................................2711.001010000
..............................................................................................................................................................................................................................................AGCAGCAGCAACAGCAACAACACCACC.........................................................................................................................2711.001010000
...................................................................................................................................................................................................................GCAGCAACAGAGCAGCGG--------GA...................................................................................................................................................2011.001010000
..................................................................................................................................................................................................................................................................................AACAACTCCGCCTCGTCCGCC...........................................................................................2111.001010000
......................................CGAAACAACGCGAAGGTACT........................................................................................................................................................................................................................................................................................................................................2011.001010000
..............................................CGCGAAGGTACTAGC------TCTA...........................................................................................................................................................................................................................................................................................................................1911.001010000
....................................................GGTACTAGC------TCTAATCCC......................................................................................................................................................................................................................................................................................................................1811.001010000
....................................GCCGAAACAACGCGAAGGTACTAGC------TCT............................................................................................................................................................................................................................................................................................................................2811.001010000
................................................................................................................................................................CAACAGCAGCAG-------------CA------------------------GCAGCA.........................................................................................................................................................................20200.102000002
.........................................................................................................................................A---------ACAGCAGCAGCAGCAACAGCAGCAG-------------.........................................................................................................................................................................................................26150.071010000
...................................................................................................................................................ACAGCAGCAGCAGCAACAGCAGCAG-------------.........................................................................................................................................................................................................25180.061010000
.........................................................................................................................................A---------ACAGCAGCAGCAGCAACAGCAGC........................................................................................................................................................................................................................24200.051010000
.................................................................................................................................................................AACAGCAGCAG-------------CA------------------------GCAGCAA........................................................................................................................................................................20200.051010000
.........................................................................................................................................A---------ACAGCAGCAGCAGCAACAGCAGCA.......................................................................................................................................................................................................................25200.051001000
...........................................................................................................................................................AGCAGCAACAGCAGCAG-------------CA------------------------GCAGCA.........................................................................................................................................................................25200.051000001
............................................................................................................................................................GCAGCAACAGCAGCAG-------------CA------------------------GCAGCA.........................................................................................................................................................................24200.051010000
droBip1
---------CAGC---GGGCCCACCCAGTCCTCGGCGCCGAAACAACGCGAAGGTACTAGC------TCTAATCCCAGCTCC---------------AGCTCCAACTCCA------------------CCAGCAGCCA---------ACAGCAGCAGCAGCAGCAACAGCA----------------------------------GCA---GCAGCAACAGAGTAGCGG--------GAGCAGCAGCAACAGCAACACCA---CCAGCA---GCAACAACTCCGCCTCCTCCGCC---GCAGCAG---------------------------------CCGTAGCCGCCGCGTCCGCGAA------TACCTCCTCCAATGGACTGTSizeHit CountTotal NormTotal
No Reads
droKik1
---------CAGC---GGACCCAGCCAGAGTTCGGCGCCCAAGCAGCGCGAAGGTACTACC------ACTAATCC------C---------------AGCTCCAACTCCA------------------GTAGCAGCCA---------GCAGCAGCAGCAACAGTCGCAGCAG-------------CAATCGCAGCAACA------GCA---GCAGC-----------AGC------AGGGCAGCAGCAACAGTAACAACAACGCCAGCA---GTAACTCCTCCGCCTCATCCGCCGCCGCAGCAGCAGCAGCAGCTGCCGCCGCCTCCCTGTCCGCCTCTGCA---GCCG---CCGCAGC------CACGTCCTCGAACGGTTTGTSizeHit CountTotal NormTotal
No Reads
droFic1
G--------CGGC---GGCGCCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACGAGCAGCACCACTAATTC------C---------------AGCTCCAACTCCA---------------CCAGCAGCAGTCA---------GCAGCAGCAGCAACAGCAGCAGCAG-------------CAG------------------CAACAGCAGC-----------AGC------AGAGCAGCAGCAGCAGCAACAACACCGCCAGCA---GCAACACCTCCGCCTCCGCATCCGC---A---------------------------------------------GCAGCCTCCGCGTC------CACATCCTCCAACGGACTGTSizeHit CountTotal NormTotal
No Reads
droEle1
---------CAGC---GGCGCCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATTC------C---------------AGCTCCAACTCCA---------------CCAGCAGCAGTCA---------GCAGCAGCAGCAACAGCAGCA-------------------------------------GCA---GCAGC-----------AGC------AGAGTAACAGCAACAGCAACACCAACGCCAGCA---GCAACACATCCGCCTCGTCCGCCGCAGCAGCAGC------------------TTCTTTGTCCGCCGCCGCTGCAGCCGCCTCCGCAGCG-AG--TCAATCCTCGAACGGATTGTSizeHit CountTotal NormTotal
No Reads
droRho1
---------CAGC---GGCACCACCCACACGTCGGCGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATTC------C---------------AGCTCCAACTCCA------------------GCAGCAGTCA---------GCAGCAGCAGCAACAGCAGC-------------------AACAGCA------------GCA---GCAGC-----------AAC------AGAGCAGCAGCAACAGCAACACCACCGCCAGCA---GCAACACCTCCGCCTCGTCCGCCGCAGCAGCAGC------------------ATCCCTGTCCGCCGCCGCTGCCGCCGCCTCCGCAGC------CACATCCTCGAACGGACTGTSizeHit CountTotal NormTotal
No Reads
droBia1
---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACCACCAGCACCACTAATTC------C---------------AGCTCCAACTCCA---------------CCAGCAGCAGTCA---------GCAGCAGCAACAGCAGCAGCAGCAA-------------CAACA---------------GCA---GCAGC-----------AGC------AGAGCAACAGCAACAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCATCCGCCGCAGCAGC------------------CTCCCTGTCCGCCGCCGCAGCCGCCGCCTCCGCAGC------TACATCCTCGAACGGACTGTSizeHit CountTotal NormTotal
No Reads
droTak1
---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACTACCAGCACCACTAATTC------C---------------AGCTCCAACTCCA------------------GCAGCAGTCA---------GCAGCAGCAGCAACAGCAGCAGCAG-------------CAACAACAGCA---------GCA---GCAGC-----------AAC------AGAGCAGCAGCAACAGCAACACCACCGCCAGCA---GCAACACCTCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCTCTTTCAGCCGCTGCTGCCGCCGCCTCCGCAGC------CACCTCCTCGAACGGACTGTSizeHit CountTotal NormTotal
No Reads
droEug1
---------CAGC---GGCACCACCCACACATCGACGCCCAAGCAGCGAGAAGGTACAACCAGCACCACTAATTC------C---------------AGCTCCAACTCCA------------------GCAGTAGTCA---------ACAGCAGCAGCAGCAGCAGCAGCAA-------------CAACAACAGCAGCAGCAG---CAACAGCAGC-----------AGCAGCAACATAACAGCAGCAATAGCAACACCAATGCCAGCA---GCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCTTTGTCCGCCGCCGCAGCAGCCGCCTCCGCAGC------CACATCCTCGAACGGTCTGTSizeHit CountTotal NormTotal
No Reads
dm3
---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCACCACTAATTC------C---------------AGCTCCAACTCTA------------------GCAGCAGTCA---------GCAGCAGCAACAACAGCAGC-------------------AACAGCAGCAGCAGCA---------GCAAC-----------AGC------AAAGTAG------CAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCCCTGTCTGCCGCCGTA---GCCGCCTCGGCAGC------CACATCCTCGAACGGACTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................ATCCGCCTCGTCCTCCGCCGC......................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................C------AAAGTAG------CAGCAACACCACC............................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
........................................AAGCAGCGCGAAGGTACAGCC.....................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
.......................................CAAGCAGCGCGAAGGTACAG.......................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................ACATCCGCCTCGTCCTCC...........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................GCAACACATCCGCCTCGTCCTC............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................CAGCACCACTAATTC------C---------------AGC..............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CGACGCCCAAGCAGCGCG................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................CCAAGCAGCGCGAAGGTA..........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................CAGCGCGAAGGTACAGCCAGC..................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TTCCCTGTCTGCCGCCGT............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CAGCAGTCA---------GCAGCAGCAACA...................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.....................................CCCAAGCAGCGCGAAGGTACA........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................AGCGCGAAGGTACAGCCAGC..................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AG------CAGCAACACCACCGCCAGC......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AAAGTAG------CAGCAACACCA..............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................G------CAGCAACACCACCGCCA........................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................C-------------------AACAGCAGCAGCAGCA---------GC.............................................................................................................................................................................19200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
........................................................................................................................................CA---------GCAGCAGCAACAACAGCAGC-------------------........................................................................................................................................................................................................22200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000001000
....................................................................................................................................................................AGC-------------------AACAGCAGCAGCAGCA---------GC.............................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
...........................................................................................................................................................................................ACAGCAGCAGCAGCA---------GCAAC-----------A..............................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................AGCAGCA---------GCAAC-----------AGC------AAAG..................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CAACAGCAGC-------------------AACAGCAGCAGCAGCA---------G..............................................................................................................................................................................27130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................AACAACAGCAGC-------------------AACAGCAGCAGCA...........................................................................................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AGCAACAACAGCAGC-------------------AACAG...................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...................................................................................................................................................GCAGCAGCAACAACAGCAG............................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...................................................................................................................................................................CAGC-------------------AACAGCAGCAGCAGCA---------G..............................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CAACAGCAGC-------------------AACAGCAGCAGCAGCA---------GC.............................................................................................................................................................................28120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................A---------GCAGCAGCAACAACAGCAGC-------------------AACAGC..................................................................................................................................................................................................27130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................GCAGCAGCAACAACAGCAGC-------------------AACAGC..................................................................................................................................................................................................26140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................CAGCAGCA---------GCAAC-----------AGC------AAA...................................................................................................................................................19170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CAGCAGCAACAACAGCAGC-------------------AA......................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................ACAGCAGCAGCAGCA---------GCAAC-----------...............................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................GCAGCAACAACAGCAGC-------------------AA......................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CAGCAACAACAGCAGC-------------------AACAG...................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................AGCAGCAGCAGCA---------GCAAC-----------AGC------A.....................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GCAGC-------------------AACAGCAGCAGCAGCA---------...............................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................CA---------GCAGCAGCAACAACAGCAGC-------------------AA......................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................AACAACAGCAGC-------------------AACAGCAGC...............................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................................................................................................................................................AACAGCAGC-------------------AACAGCAGCAGC............................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................AACAGCAGC-------------------AACAGCAGCAGCA...........................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CAACAGCAGC-------------------AACAGCAGCAG.............................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AGCAGCAGCA---------GCAAC-----------AGC------......................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................ACAACAGCAGC-------------------AACAGCAGCAGC............................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CAGC-------------------AACAGCAGCAGCAGCA---------GC.............................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droSim2
---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCACCACTAATTC------C---------------AGCTCCAACTCTA------------------GCAGCAGTCA---------GCAGCAGCAGCAGCAACAACAGCAG-------------CAACAGCAGCAGCAGCAG---CAACAGCAGC-----------AGC------AAAGTAG------CAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCCCTGTCCGC---------------------GCC-CAAAACATCTG-CTGAAGGTTGCGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................CAACAGCAG-------------CAACAGCAGCAGC............................................................................................................................................................................................22203.1563000063000000000000
...........................................................................................................................................................................................................................................................................................................CAGCAGC------------------TTCCCTGTCCGC---------------------C............................2012.00200200000000000000
...........................................................................................................................................................................................ACAGCAGCAGCAGCAG---CAACAGCAG...........................................................................................................................................................................25201.3026000002600000000000
.....................................................................TAATTC------C---------------AGCTCCAA.........................................................................................................................................................................................................................................................................................1560.33200000001010000000
...........................................................................................................................................................AGCAGCAACAACAGCAG-------------CAACAGCAGC...............................................................................................................................................................................................2770.14100010000000000000
..............................................................................................................................................................AGCAACAACAGCAG-------------CAACAGCAGC...............................................................................................................................................................................................2480.13100010000000000000
...............................................................................................................................................................GCAACAACAGCAG-------------CAACAGCAGCAGT............................................................................................................................................................................................26100.10100000000001000000
.....................................................................................................................................................AGCAGCAGCAGCAACAACAGCAG-------------CA.......................................................................................................................................................................................................25200.10200000000000200000
.......................................................................................................................................................................AGCAG-------------CAACAGCAGCAGCAGCAG---CA..................................................................................................................................................................................25200.10200000000000200000
................................................................................................................................................................CAACAACAGCAG-------------CAACAGCAGCAG.............................................................................................................................................................................................24100.10100000000000100000
.................................................................................................................................................................AACAACAGCAG-------------CAACAGCAGCA..............................................................................................................................................................................................22120.08100000000000100000
........................................................................................................................................................AGCAGCAGCAACAACAGCAG-------------CA.......................................................................................................................................................................................................22200.05100000000000100000
.....................................................................TAATTC------C---------------AGCTCCAT.........................................................................................................................................................................................................................................................................................15200.05100000000001000000
........................................................................................................................................................AGCAGCAGCAACAACA..........................................................................................................................................................................................................................16200.05100000000001000000
............................................................................................................................................................................................CAGCAGCAGCAGCAG---CAACAGC.............................................................................................................................................................................22200.05100100000000000000
.................................................................................................................................................................AACAACAGCAG-------------CAACAGCA.................................................................................................................................................................................................19200.05100000000000100000
...............................................................................................................................................................GCAACAACAGCAG-------------CAACAGC..................................................................................................................................................................................................20200.05100000000000100000
.....................................................................................................................................................................................................CAGCAG---CAACAGCAGC-----------AGC------......................................................................................................................................................19200.05100000000001000000
...................................................................................................................................................................................................................................................................................................CTCCGCCGCAGCAGA------------------..............................................................15200.05100000000010000000
droSec2
---------CAGC---GGCACCACCCACACGTCGACGCCTAAGCAGCGCGAAGGTACAGCCAGCACCACTAATTC------C---------------AGCTCCAACTCTA------------------GCAGCAGTCA---------GCAGCAGCAGCAGCAACAACAGCAG-------------CAACAGCAGCAGCAGCAG---CAACAGCAGC-----------AGC------AAAGTAG------CAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------TTCCCTGTCCGCCGCCGTA---GCCGCCTCCGCAGC------CACATCCTCGAACGGACTGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................CAGCAGC------------------TTCCCTGTCCGCCGCCGT............................................2512.0020020
..............................................................................................................................................................................................................CAACAGCAGC-----------AGC------AAAGTAG------C........................................................................................................................................2111.0010010
...........................................................................................................................................................................................................................................................................................................CAGCAGC------------------TTCCCTGTCCGCCGCC..............................................2311.0010010
.............................................................................................................................................................................................................................................................................................CTCGTCCTCCGCCGCAGCAGC------------------..............................................................2111.0010010
.....................................................................................................................................................................................................................AGC-----------AGC------AAAGTAG------CAGCA....................................................................................................................................1811.0010010
..........................................................................................................................................................................................................................................................................................CGCCTCGTCCTCCGCCGC......................................................................................1811.0010010
..................................................................................................................................................................................................................................................................................AACACATCCGCCTCGTCCTCCGCCG.......................................................................................2511.0010010
.............................................................................................................................................................................................................................................................................................CTCGTCCTCCGCCGCAGCAGC------------------TTC...........................................................2411.0010010
..........................................GCAGCGCGAAGGTACAGCCAGCA.................................................................................................................................................................................................................................................................................................................................2311.0010010
.....................................................................................................................................................................................................CAGCAG---CAACAGCAGC-----------AGC------AAA...................................................................................................................................................2260.1710010
.............................................................................................................................................................CAGCAACAACAGCAG-------------CAA......................................................................................................................................................................................................18200.1020020
.............................................................................................................................................................CAGCAACAACAGCAG-------------CAACAG...................................................................................................................................................................................................21200.0510001
.............................................................................................................................................................CAGCAACAACAGCAG-------------CAACAGC..................................................................................................................................................................................................22200.0510001
............................................................................................................................................................GCAGCAACAACAGCAG-------------CAACAGCA.................................................................................................................................................................................................24200.0510010
....................................................................................................................................................................AACAGCAG-------------CAACAGCAGCAGCA...........................................................................................................................................................................................22200.0510010
................................................................................................................................................................CAACAACAGCAG-------------CAACAGC..................................................................................................................................................................................................19200.0510010
........................................................................................................................................................................GCAG-------------CAACAGCAGCAGCAGCA........................................................................................................................................................................................21200.0510010
................................................................................................................................................................CAACAACAGCAG-------------CAACAGCA.................................................................................................................................................................................................20200.0510010
.....................................................................................................................................................................ACAGCAG-------------CAACAGCAGCAGC............................................................................................................................................................................................20200.0510010
................................................................................................................................................................CAACAACAGCAG-------------CAACAGCAGC...............................................................................................................................................................................................22200.0510010
....................................................................................................................................................................................................GCAGCAG---CAACAGCAGC-----------AGC------A.....................................................................................................................................................21200.0510010
............................................................................................................................................................GCAGCAACAACAGCAG-------------CA.......................................................................................................................................................................................................18200.0510010
.......................................................................................................................................................................AGCAG-------------CAACAGCAGCAGCAGCAG---CAACA...............................................................................................................................................................................28200.0510010
..............................................................................................................................................................AGCAACAACAGCAG-------------CAACAGCAGCAGC............................................................................................................................................................................................27200.0510100
.............................................................................................................................................................CAGCAACAACAGCAG-------------CAACAGCAGCA..............................................................................................................................................................................................26200.0510010
.................................................................................................................................................................AACAACAGCAG-------------CAACAGCAGC...............................................................................................................................................................................................21200.0511000
..............................................................................................................................................................AGCAACAACAGCAG-------------CAACAGCAGCA..............................................................................................................................................................................................25200.0510010
................................................................................................................................................................CAACAACAGCAG-------------CAACAGCAGCAGCA...........................................................................................................................................................................................26200.0510010
................................................................................................................................................................CAACAACAGCAG-------------CAACAGCAG................................................................................................................................................................................................21200.0511000
...............................................................................................................................................................GCAACAACAGCAG-------------CAACAGCAGC...............................................................................................................................................................................................23200.0510010
droYak3
---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCACCACTAATTC------C---------------AGCTCCAACTCTA------------------GCAGCAGTCA---------GCACCAGCAGCAGCAACAACAGCAG-------------CAACAGCAGCAGCAGCAG---CAACAGCAGC-----------AGC------AGAGTAA------CAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCCTCCGCCGCAGCAGC------------------ATCCCTGTCCGCCGCCGTA---GCCGCCTCCGCAGC------CACATCCTCGAACGGATTGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................CTAATTC------C---------------AGCTCCAACTCTA------------------GC................................................................................................................................................................................................................................................................2311.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................GCAGC------CACATCCTCGAACGGATTGT2511.00100010000000
.................................................................................................................................................................................................................................................................................................................................................................CCGCAGC------CACATCCTCGAACG......2111.00100100000000
.............................................................................................................................................................................................................................................................................................................GCAGC------------------ATCCCTGTCCGCCGCC..............................................2111.00100100000000
...............................................................................................................................................................GCAACAACAGCAG-------------CAACAGCAGCAGCA...........................................................................................................................................................................................27180.06101000000000
droEre2
---------CAGC---GGCACCACCCACACGTCGACGCCCAAGCAGCGCGAAGGTACAGCCAGCTCCACTAATTC------C---------------AGCTCCAACTCTA------------------GCAGCAGTCA---------GCAGCAGCAGCAGCAGCAGCAACAG-------------CAGCAACAGCAGCAGCAA---CAGCAGCAGC-----------AGC------AGAGTAG------CAGCAACACCACCGCCAGCA---GCAACACATCCGCCTCGTCCGCCGCCGCAGCAGC------------------ATCCCTGTCCGCCGCCGTA---GCCGCCTCCGCAGC------CACATCCTCGAACGGATTGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................GTACAGCCAGCTCCACTAATTC------C---------------.................................................................................................................................................................................................................................................................................................2311.0010001000
..................CACCACCCACACGTCGACGCC...........................................................................................................................................................................................................................................................................................................................................................2111.0010100000
.......................................................................................................................................................................................................................................................................................ATCCGCCTCGTCCGCCGCCGC......................................................................................2111.0010100000
..........................................................GCCAGCTCCACTAATTC------C---------------AGCTCCAACT.......................................................................................................................................................................................................................................................................................2811.0011000000
.....................................................................................................CCAACTCTA------------------GCAGCAGTCA---------GC.............................................................................................................................................................................................................................................2111.0010100000
..................................................................................................................................................................................................................AGCAGC-----------AGC------AGAGTAG------CAGCAACACCACC............................................................................................................................2911.0010100000
...........................CACGTCGACGCCCAAGCAGC...................................................................................................................................................................................................................................................................................................................................................2011.0010001000
.................................................................................................................................................................................................................................................................................................................................................................CCGCAGC------CACATCCTCGAA........1911.0010100000
.....................................................................................................................................................................................................CAGCAA---CAGCAGCAGC-----------AGC------AGA...................................................................................................................................................22170.0610000010
..................................................................................................................................................................GCAGCAACAG-------------CAGCAACAGCAGCAGC.........................................................................................................................................................................................26200.0510100000
..................................................................................................................................................................GCAGCAACAG-------------CAGCAACAGCAGCA...........................................................................................................................................................................................24200.0510000100
...........................................................................................................................................................................G-------------CAGCAACAGCAGCAGCAA---CAGCAGCAGC-----------...............................................................................................................................................................29200.0510100000
............................................................................................................................................................................................CAACAGCAGCAGCAA---CAGCAGCA............................................................................................................................................................................23200.0510000010
...........................................................................................................................................................AGCAGCAGCAGCAACAG-------------CAGC.....................................................................................................................................................................................................21200.0510001000
.................................................................................................................................................................AGCAGCAACAG-------------CAGCAACAGCAGCAG..........................................................................................................................................................................................26200.0511000000
...............................................................................................................................................................GCAGCAGCAACAG-------------CAGCA....................................................................................................................................................................................................18200.0511000000
..............................................................................................................................................................................................ACAGCAGCAGCAA---CAGCAGCAGC-----------AGC------......................................................................................................................................................26200.0511000000

Generated: 05/18/2015 at 07:17 AM