ID:

dwi_349

 Coordinate:

scf2_1100000004382:1239434-1239584 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.9 -32.3 -32.2

Flybase annnotation

CDS [Dwil\GK10616-cds]; exon [dwil_GLEANR_10828:1]; intron [Dwil\GK10616-in]

No Repeatable elements found

Sense Strand Reads

------############################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATAAGATGGCAGAAGTACCGCTACCCAATGAACTGCAGCAGCTTTTTGCGTAAGTGAAAGTATTTTTGCGTGAGTGAGTATGTGTGTGCGTGTGGGTGGTTGGGATGCGGATGCAGGATGATAAGTTATCTGCCTATATTTGTCACTTATTGTGGGTTTTATTGCTCGATTTTGATAATAGAATCGCCCTCGTCAACAACATGAAACTTTTACAATGACAAAGAGTAAACACGATAAGGCTGGCTAGGAG
**************************************************((((((((((((((....(((.((.....(((.....(((((.((.((.......)).)).))))).....))).....)))))..)))))).))))))))((.(((((((((((.(((....))))))))))...)))).))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 V119
head
 M045
female body
 M020
head
.................ACCGCTACCCAATGAACTGCAGC................................................................................................................................................................................................................... 23 0 1 3.00 3 3 0 0 0 0
.ATAAGATGGCAGAAGTACCG...................................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0
.ATAAGATGGCAGAAGTACCGC..................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0
.ATAAGATGGCAGAAGTACC....................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0
.ATAATATGGCAGAAGTACCGC..................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.......................................................................................TGCGTGTGGGTGGTTGGGATGC.............................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0
............................................................................................GTGGGTGGTTGGGATGCGGA........................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
..........................CAATGAACTGCAGCAGCTT.............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
...............GTACCGCTACCCAATGAACT........................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
...........................AATGAACTGCAGCAGCTT.............................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0
...........................................................................................TGTGGGTGGTTGGGATGCGGATG......................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0
...AAGATGGCAGAAGTACCGCTACC................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
AATAAGATGGCAGAAGTACCGCT.................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
...AAGATGGCAGAAGTACCGCTACCCAAT............................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
...AAGATGGCAGAAGTACCG...................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0
.ATAAGATGGCAGAAGTACCGCTACCC................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0
..TAAGATGGCAGAAGTACCTCTACC................................................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0
.........................CCAATGAACTGCAGCAGC................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0
..........................CAATGAACTGCAGCAGCTTTTTGCGT....................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0
...AAGATGGCAGAAGTACCGCTACCC................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
...............GTACCGCTACCCAATGAACTGC...................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
...........................................................................................................GCGGATGCAGGATGATAAGTTA.......................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
.......................ACCCAATGAACTGCAGCAGC................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
...........................................................................................TGTGGGTGGTTGGGATGCGGAT.......................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
........................................................................GAGTGAGTATGTGTGTGCGT............................................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0
....................................................................................................................................................................................AGAAGCGCCATCGTCAAC..................................................... 18 2 6 0.33 2 0 0 0 1 1
...................................................................................................GGTGGGGCGCGGATGCAGG..................................................................................................................................... 19 3 12 0.08 1 0 0 0 1 0
...............................................................TTTTTGGATGAGTGAGTA.......................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TTATTCTACCGTCTTCATGGCGATGGGTTACTTGACGTCGTCGAAAAACGCATTCACTTTCATAAAAACGCACTCACTCATACACACACGCACACCCACCAACCCTACGCCTACGTCCTACTATTCAATAGACGGATATAAACAGTGAATAACACCCAAAATAACGAGCTAAAACTATTATCTTAGCGGGAGCAGTTGTTGTACTTTGAAAATGTTACTGTTTCTCATTTGTGCTATTCCGACCGATCCTC
**************************************************((((((((((((((....(((.((.....(((.....(((((.((.((.......)).)).))))).....))).....)))))..)))))).))))))))((.(((((((((((.(((....))))))))))...)))).))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
..................................................................................................................GTCCTACTATTCAATAGACGG.................................................................................................................... 21 0 1 1.00 1 1 0
.....................................................................................................................................................TATCACCCAAAATAACGAGAA................................................................................. 21 3 8 0.13 1 1 0
.....................................................................................................................................GGTGATAAACAGTGAATA.................................................................................................... 18 2 12 0.08 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004382:1239384-1239634 - dwi_349 AA-----TAAGATGGCAGAAGTACCGCTACCCAATGAACTGCAGCAGCTTTTTGCGTAAGTGAAAGTATTTT-TGC-------------------GTGAGTGAGTATGTGTGTGC--------GTGTGGGTGGTTGGGATGCGGATGCAGGATGATAAGTTATCTGCCTATATTTGTCACTTATTGTGGGTTTTATTGCTCGATTTTGATAATAGAATCGCCCTCGTCAACAACATGAAACTTTTACAATGACAAAGAGTAAACACGATAAGGCTGGCTAGGAG
droVir3 scaffold_10324:715239-715362 - A------TAAAATGGCGGA------GCTACCCAGTGAAATGAAACAGCTATTCGAGTAAGTATAAGGAAAAAAA--GCCGC-T--ATCTAT--------ATATGTATGTGTGTGTGTGTGAGT--------G-TTGGGTTATGGATGCGAGATGACGA------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:2560609-2560735 - GC--------AATGGCGTC------ACTACCCAATGAATTGAAACAGTTATTTGAGTGAGTAATAAGAAAAG-A--TCCGCAAATATCTTTCTATGCGTGTGTGTTTGTGTGTGT--------GTGTGCGTGCTTTTGTT--GGATGCGGGATG----------------------------------------------------------------------------------------------------------------------------------
dp5 3:230854-230924 + AA--------AATGTCAGA------GCTTCCCAGTGAACTTCAGCAATTCTTCGCGTAAGTAAAAACAAAAT-TGA-------------------T------------------TGTGTGGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_2:410249-410319 + AA--------AATGTCAGA------GCTTCCCAGTGAACTTCAGCAATTCTTCGCGTAAGTAAAAACAAAAT-TGA-------------------T------------------TGTGTGGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:19242794-19242847 + AACT-TCAAAGATGTCAGA------GCTTCCCACTGAACTCCAGCAACTCTTCGCGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396710:131329-131384 - AAACTTCAAAGATGGCAGA------GCTTCCCACTGAACTCCAACAACTCTTCGCGTAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000301950:1758-1797 + C------------------------GCTTCCTGCTGAACTCCAGCAGTTCTTCTCGTAAGTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000452651:15146-15214 + AG-----TACGATGGCCGA------GCTTTCGAATGAACTTCAGCAATTATTTGCGTGAGTAGAA------T-GGG-------------------T-----------------CTGCGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490104:84297-84348 - CACA-AGTACGATGGCCGA------------CCATGAACTCCAGCAGTTCTTTGCGTAAGTAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777987:13640-13673 + -------------------------------CAATAAACTCCAGGAATTCTTTGCGTAAGTAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302358:30605-30658 + AG-----TACGATGGCCGA------GCTTCCCAATGAACTCAAGCAGTTATTTGCGTAAGTAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000413173:16327-16380 + AG-----TACGATGGCAGA------GCTTCCCGATGAACTCCAACAGTTCTTTGCGTATGTATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409307:19796-19883 - ----------GATGGCCGA------GCTTCCGAAAGAACTTCAGCAACTCTTTGCGTAAGTATAAGCGTATTAA--GCTA-AAATGAGTTTA---A------------------TGTGTGCACTTCTG------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:2535672-2535730 + AAGAAAGCGCGATGTCCGA------GCTATCAAGTGAACTTCAAAAATTCTTTGCGTAAGTATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_26:223110-223149 + -------------------------GCTATCAAGTGAACTTCAAAAATTCTTTGCGTAAGTATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AA-----TAAGATGGCAGAAGTACCGCTACCCAATGAACTGCAGCAGCTTTTTGCGTAAGTGAAAGTATTTT-TGC-------------------GTGAGTGAGTATGTGTGTGC--------GTGTGGGTGGTTGGGATGCGGATGCAGGATGATAAGTTATCTGCCTATATTTGTCACTTATTGTGGGTTTTATTGCTCGATTTTGATAATAGAATCGCCCTCGTCAACAACATGAAACTTTTACAATGACAAAGAGTAAACACGATAAGGCTGGCTAGGAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................ACCGCTACCCAATGAACTGCAGC...............................................................................................................................................................................................................................................2313.00300030
.A-----TAAGATGGCAGAAGTACCG..................................................................................................................................................................................................................................................................2012.00200020
.A-----TAAGATGGCAGAAGTACCGC.................................................................................................................................................................................................................................................................2112.00200110
.A-----TAAGATGGCAGAAGTACC...................................................................................................................................................................................................................................................................1912.00200020
................................................................................................................TGC--------GTGTGGGTGGTTGGGATGC..............................................................................................................................................2211.00100001
.............................................................................................................................GTGGGTGGTTGGGATGCGGA...........................................................................................................................................2011.00100010
...............................CAATGAACTGCAGCAGCTT..........................................................................................................................................................................................................................................1911.00100010
....................GTACCGCTACCCAATGAACT....................................................................................................................................................................................................................................................2011.00100010
................................AATGAACTGCAGCAGCTT..........................................................................................................................................................................................................................................1811.00100010
............................................................................................................................TGTGGGTGGTTGGGATGCGGATG.........................................................................................................................................2311.00101000
........AAGATGGCAGAAGTACCGCTACC.............................................................................................................................................................................................................................................................2311.00100010
AA-----TAAGATGGCAGAAGTACCGCT................................................................................................................................................................................................................................................................2311.00100100
........AAGATGGCAGAAGTACCGCTACCCAAT.........................................................................................................................................................................................................................................................2711.00100010
........AAGATGGCAGAAGTACCG..................................................................................................................................................................................................................................................................1811.00100001
.A-----TAAGATGGCAGAAGTACCGCTACCC............................................................................................................................................................................................................................................................2611.00100100
..............................CCAATGAACTGCAGCAGC............................................................................................................................................................................................................................................1811.00100010
...............................CAATGAACTGCAGCAGCTTTTTGCGT...................................................................................................................................................................................................................................2611.00100100
........AAGATGGCAGAAGTACCGCTACCC............................................................................................................................................................................................................................................................2411.00100010
....................GTACCGCTACCCAATGAACTGC..................................................................................................................................................................................................................................................2211.00100010
............................................................................................................................................GCGGATGCAGGATGATAAGTTA..........................................................................................................................2211.00100010
............................ACCCAATGAACTGCAGCAGC............................................................................................................................................................................................................................................2011.00100010
............................................................................................................................TGTGGGTGGTTGGGATGCGGAT..........................................................................................................................................2211.00100001
.................................................................................................GAGTGAGTATGTGTGTGC--------GT...............................................................................................................................................................2020.50100100
droVir3
A------TAAAATGGCGGA------GCTACCCAGTGAAATGAAACAGCTATTCGAGTAAGTATAAGGAAAAAAA--GCCGC-T--ATCTAT--------ATATGTATGTGTGTGTGTGTGAGT--------G-TTGGGTTATGGATGCGAGATGACGA------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........ATGGCGGA------GCTACCCAGTG........................................................................................................................................................................................................................................................1912.002000000010000000000000000100000000000000000000000000000000000000
...........................TACCCAGTGAAATGAAACAGC............................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000001010
..........................................AACAGCTATTCGAGTAAGTAT.............................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
.................................GTGAAATGAAACAGCTATT........................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
.........AAATGGCGGA------GCTACCCAGTGAAA.....................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.........................GCTACCCAGTGAAATGAAACAGC............................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
................................AGTGAAATGAAACAGCTATT........................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
...........ATGGCGGA------GCTACCCAGTGAAATGAAA................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
..................A------GCTACCCAGTGAAATGAAACAG.............................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
..........................CTACCCAGTGAAATGAAACAGCTATA........................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
.......TAAAATGGCGGA------GCTACCCAGTGAAA.....................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
......................................................................................................TGTATGTGTGTGTGTGTGAGT--------G-.......................................................................................................................................................22200.051000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................GTATGTGTGTGTGTGTGAGT--------.........................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
GC--------AATGGCGTC------ACTACCCAATGAATTGAAACAGTTATTTGAGTGAGTAATAAGAAAAG-A--TCCGCAAATATCTTTCTATGCGTGTGTGTTTGTGTGTGT--------GTGTGCGTGCTTTTGTT--GGATGCGGGATG----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................TTTGTGTGTGT--------GTGTGCGTGC.......................................................................................................................................................2170.141000010
dp5
AA--------AATGTCAGA------GCTTCCCAGTGAACTTCAGCAATTCTTCGCGTAAGTAAAAACAAAAT-TGA-------------------T------------------TGTGTGGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............GTCAGA------GCTTCCCAGTGAACTT...................................................................................................................................................................................................................................................2221.0020000011000
....................................AACTTCAGCAATTCTTCGC.....................................................................................................................................................................................................................................1920.5010100000000
.............GTCAGA------GCTTCCCAGTGAACTTCA.................................................................................................................................................................................................................................................2420.5010000001000
............TGTCAGA------GCTTCCCAGTGAACTT...................................................................................................................................................................................................................................................2320.5010000010000
.A--------AATGTCAGA------GCTTCCCAGTGAAC.....................................................................................................................................................................................................................................................2420.5010100000000
...........ATGTCAGA------GCTTCCCAGTGAA......................................................................................................................................................................................................................................................2120.5010100000000
AA--------AATGTCAGA------GCTTCCCAGT.........................................................................................................................................................................................................................................................2120.5010100000000
...........................TTCCCAGTGAACTTCAGCAATT...........................................................................................................................................................................................................................................2220.5010100000000
.A--------AATGTCAGA------GCTTCCCAGT.........................................................................................................................................................................................................................................................2020.5010100000000
...........................TTCCCAGTGAACTTCAGCAATTCTTCGC.....................................................................................................................................................................................................................................2820.5010010000000
droPer2
AA--------AATGTCAGA------GCTTCCCAGTGAACTTCAGCAATTCTTCGCGTAAGTAAAAACAAAAT-TGA-------------------T------------------TGTGTGGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........AATGTCAGA------GCTTCCCAGT.........................................................................................................................................................................................................................................................1911.001010000
...........ATGTCAGA------GCTTCCCAGTGAACTTC..................................................................................................................................................................................................................................................2511.001010000
.A--------AATGTCAGA------GCTTCCCAGTGAAC.....................................................................................................................................................................................................................................................2411.001100000
droAna3
AACT-TCAAAGATGTCAGA------GCTTCCCACTGAACTCCAGCAACTCTTCGCGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................GA------GCTTCCCACTGAACTCCAGC...............................................................................................................................................................................................................................................2213.003030000
.............GTCAGA------GCTTCCCACTGAACTCCAGC...............................................................................................................................................................................................................................................2612.002110000
.........................GCTTCCCACTGAACTCCAGC...............................................................................................................................................................................................................................................2012.002020000
................AGA------GCTTCCCACTGAACTCCAGC...............................................................................................................................................................................................................................................2312.002020000
.........................GCTTCCCACTGAACTCCAGCAACTC..........................................................................................................................................................................................................................................2511.001010000
...T-TCAAAGATGTCAGA------GCTTCCCACC.........................................................................................................................................................................................................................................................2511.001010000
.......AAAGATGTCAGA------GCTTCCCACT.........................................................................................................................................................................................................................................................2211.001100000
........AAGATGTCAGA------GCTTCCCAC..........................................................................................................................................................................................................................................................2011.001000010
.............................CCCACTGAACTCCAGCAACTCTT........................................................................................................................................................................................................................................2311.001100000
.........................GCTTCCCACTGAACTCCAGCAACTCTTC.......................................................................................................................................................................................................................................2811.001010000
...............CAGA------GCTTCCCACTGAACTCCAGC...............................................................................................................................................................................................................................................2411.001010000
.................GA------GCTTCCCACTGAACTCCAGCAA.............................................................................................................................................................................................................................................2411.001010000
..........................CTTCCCACTGAACTCCAGCAACTCTTC.......................................................................................................................................................................................................................................2711.001010000
..........................CTTCCCACTGAACTCCAGCAACTCTT........................................................................................................................................................................................................................................2611.001100000
...............CAGA------GCTTCCCACTGAACTCC..................................................................................................................................................................................................................................................2111.001010000
........AAGATGTCAGA------GCTTCCCACTGAAC.....................................................................................................................................................................................................................................................2511.001010000
................AGA------GCTTCCCACTGAACTCCAGCAACT...........................................................................................................................................................................................................................................2711.001010000
..........GATGTCAGA------GCTTCCCACTGAA......................................................................................................................................................................................................................................................2211.001001000
.................GA------GCTTCCCACTGAACTCCAGCAACTC..........................................................................................................................................................................................................................................2711.001010000
...............................CACTGAACTCCAGCAACTCTTC.......................................................................................................................................................................................................................................2211.001001000
droBip1
AAACTTCAAAGATGGCAGA------GCTTCCCACTGAACTCCAACAACTCTTCGCGTAAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
C------------------------GCTTCCTGCTGAACTCCAGCAGTTCTTCTCGTAAGTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AG-----TACGATGGCCGA------GCTTTCGAATGAACTTCAGCAATTATTTGCGTGAGTAGAA------T-GGG-------------------T-----------------CTGCGTGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CACA-AGTACGATGGCCGA------------CCATGAACTCCAGCAGTTCTTTGCGTAAGTAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
-------------------------------CAATAAACTCCAGGAATTCTTTGCGTAAGTAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AG-----TACGATGGCCGA------GCTTCCCAATGAACTCAAGCAGTTATTTGCGTAAGTAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AG-----TACGATGGCAGA------GCTTCCCGATGAACTCCAACAGTTCTTTGCGTATGTATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
----------GATGGCCGA------GCTTCCGAAAGAACTTCAGCAACTCTTTGCGTAAGTATAAGCGTATTAA--GCTA-AAATGAGTTTA---A------------------TGTGTGCACTTCTG------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSim2
AAGAAAGCGCGATGTCCGA------GCTATCAAGTGAACTTCAAAAATTCTTTGCGTAAGTATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......CGCGATGTCCGA------GCTATCAAGTGAACTT...................................................................................................................................................................................................................................................2813.00320010000000000000
......GCGCGATGTCCGA------GCTATCAAGT.........................................................................................................................................................................................................................................................2312.00200020000000000000
..GAAAGCGCGATGTCCGA------G..................................................................................................................................................................................................................................................................1811.00100000000001000000
.........CGATGTCCGA------GCTATCAAGTGAACTTCAA................................................................................................................................................................................................................................................2911.00100010000000000000
................CGA------GCTATCAAGTGAACTTCAAAAA.............................................................................................................................................................................................................................................2511.00100000001000000000
...........ATGTCCGA------GCTATCAAGTGAACTT...................................................................................................................................................................................................................................................2411.00101000000000000000
...............CCGA------GCTATCAAGTGAAC.....................................................................................................................................................................................................................................................1811.00100000100000000000
....AAGCGCGATGTCCGA------GCT................................................................................................................................................................................................................................................................1811.00100000000001000000
.............GTCCGA------GCTATCAAGTGAACTTC..................................................................................................................................................................................................................................................2311.00101000000000000000
........GCGATGTCCGA------GCTATCAAGTGAACT....................................................................................................................................................................................................................................................2611.00100000001000000000
............TGTCCGA------GCTATCAAGTGAACTT...................................................................................................................................................................................................................................................2311.00101000000000000000
droSec2
-------------------------GCTATCAAGTGAACTTCAAAAATTCTTTGCGTAAGTATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads

Generated: 05/17/2015 at 10:49 PM