ID:

dwi_3448

 Coordinate:

scf2_1100000004943:12256310-12256460 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dwil\GK14247-cds]; exon [dwil_GLEANR_14569:10]; intron [Dwil\GK14247-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTTCAATATCGGATTTACAAAGTGTTACCTCCAGACTCAGTGCTGTTTCGGTGAGTGTTTATTTAAAGGTTTTTCTTTCATCTAGCAGCTCATTTAAGTTGCAATGTGTGTGTGTGTGAGTGAGGGTTGTGGATGTATGTGTGTGAGTGTGCTGCATCTGAATGCGTCTAAATTGATTAAGTGCTCTTTGTGACAAACAAAGTTCGAATTTTTGTGCCAACGTCTGGCAAAAGAAGAAGGAAAAACAAAAT
**************************************************(((((((((.....(((((....))))).....)))).))))).................(((.(((....((((((..(((((((((..((((.((....))))))....)))))))))............))))))....))).)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V119
head
 M020
head
 V118
embryo
.................................................................................................................GTGTGAGAGAGGGTTGTGG....................................................................................................................... 19 1 1 660.00 660 497 162 1 0 0
...................................................................................................................GTGAGAGAGGGTTGTGGA...................................................................................................................... 18 1 2 537.50 1075 491 546 37 0 1
..................................................................................................................TGTGAGAGAGGGTTGTGG....................................................................................................................... 18 1 1 408.00 408 243 150 15 0 0
.................................................................................................................GTGTGAGAGAGGGTTGTGGA...................................................................................................................... 20 1 1 351.00 351 214 137 0 0 0
...............................................................................................................GAGTGTGAGAGAGGGTTGTGGA...................................................................................................................... 22 2 1 323.00 323 127 189 6 1 0
.................................................................................................................GTGTGAGAGAGGGTTGTG........................................................................................................................ 18 1 2 303.50 607 552 54 0 1 0
................................................................................................................AGTGTGAGAGAGGGTTGTGG....................................................................................................................... 20 2 3 292.00 876 517 331 28 0 0
...............................................................................................................GAGTGTGAGAGAGGGTTGTGG....................................................................................................................... 21 2 3 283.00 849 376 450 23 0 0
.................................................................................................................GTGTGAGAGAGGGTTGTGGAATT................................................................................................................... 23 3 2 280.50 561 359 196 3 3 0
................................................................................................................AGTGTGAGAGAGGGTTGTGGA...................................................................................................................... 21 2 1 267.00 267 107 157 3 0 0
..................................................................................................................TGTGAGAGAGGGTTGTGGA...................................................................................................................... 19 1 1 244.00 244 105 130 9 0 0
................................................................................................................AGTGTGAGAGAGGGTTGTG........................................................................................................................ 19 2 5 173.80 869 560 291 18 0 0
.................................................................................................................GTGTGAGAGAGGGTTGTGGAA..................................................................................................................... 21 2 1 156.00 156 74 80 2 0 0
...............................................................................................................GAGTGTGAGAGAGGGTTGTG........................................................................................................................ 20 2 5 154.60 773 330 416 25 2 0
.................................................................................................................GTGTGAGAGAGGGTTGTGGAAT.................................................................................................................... 22 3 4 129.00 516 331 183 1 0 1
..............................................................................................................AGAGTGTGAGAGAGGGTTGTGGA...................................................................................................................... 23 3 5 104.40 522 218 295 9 0 0
..................................................................................................................TGTGAGAGAGGGTTGTGGAA..................................................................................................................... 20 2 2 100.50 201 79 116 6 0 0
...................................................................................................................GTGAGAGAGGGTTGTGGAA..................................................................................................................... 19 2 7 80.43 563 224 325 12 0 2
.................................................................................................................GTATGAGAGAGGGTTGTGGA...................................................................................................................... 20 2 1 67.00 67 43 24 0 0 0
...............................................................................................................GAGTGTGAGAGAGGGTTGTGGAA..................................................................................................................... 23 3 2 49.00 98 44 49 5 0 0
...............................................................................................................GAGTGTGAGAGAGGGTTGT......................................................................................................................... 19 2 13 37.62 489 233 244 5 6 1
...................................................................................................................ATGAGAGAGGGTTGTGGA...................................................................................................................... 18 2 7 34.00 238 140 98 0 0 0
..................................................................................................................TATGAGAGAGGGTTGTGGA...................................................................................................................... 19 2 1 33.00 33 15 18 0 0 0
................................................................................................................AGTGTGAGAGAGGGTTGT......................................................................................................................... 18 2 20 28.20 564 387 160 10 6 1
................................................................................................................AGTGTGAGAGAGGGTTGTGGAA..................................................................................................................... 22 3 5 25.80 129 63 64 2 0 0
.................................................................................................................GTATGAGAGAGGGTTGTGG....................................................................................................................... 19 2 4 20.50 82 48 34 0 0 0
....................................................................................................................TGAGAGAGGGTTGTGGAA..................................................................................................................... 18 2 17 16.65 283 196 81 5 1 0
................................................................................................................AGTATGAGAGAGGGTTGTGGA...................................................................................................................... 21 3 2 4.00 8 5 3 0 0 0
.................................................................................................................GTATGAGAGAGGGTTGTGGAA..................................................................................................................... 21 3 6 3.83 23 10 13 0 0 0
...................................................................................................................GTGAGCGAGGGTTGTGGA...................................................................................................................... 18 1 1 3.00 3 1 2 0 0 0
.................................................................................................................CTGTGAGAGAGGGTTGTGGA...................................................................................................................... 20 2 1 3.00 3 0 3 0 0 0
..................................................................................................................TATGAGAGAGGGTTGTGGAA..................................................................................................................... 20 3 16 2.94 47 21 26 0 0 0
..................................................................................................................TATGAGAGAGGGTTGTGG....................................................................................................................... 18 2 9 2.78 25 17 8 0 0 0
................................................................................................................GGTGTGAGAGAGGGTTGTGGA...................................................................................................................... 21 2 1 2.00 2 1 1 0 0 0
...............................................................................................................GAGTATGAGAGAGGGTTGTGGA...................................................................................................................... 22 3 2 2.00 4 2 2 0 0 0
.................................................................................................................GTGTGAGAGATGGTTGTGGA...................................................................................................................... 20 2 1 2.00 2 0 2 0 0 0
...................................................................................................................GTGAGTGAGGGTTGTGGAA..................................................................................................................... 19 1 1 2.00 2 0 2 0 0 0
..............................................................................................................AGAGTGTGAGCGAGGGTTGTGGA...................................................................................................................... 23 3 2 1.50 3 0 3 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTGAAT..................................................................................................................... 19 2 3 1.33 4 3 1 0 0 0
...................................................................................................................GTGAGAGCGGGTTGTGGA...................................................................................................................... 18 2 4 1.25 5 0 4 1 0 0
................................................................................................................CGTGTGAGAGAGGGTTGTGG....................................................................................................................... 20 2 2 1.00 2 2 0 0 0 0
...............................................................................................................GAGTGTGAGTGAGGGTTGTGG....................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.................................................................................................................GTGTAAGAGAGGGTTGTGGA...................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0
.................................................................................................................GTGTGAGAGAGGGCTGTGGA...................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTGGACGA................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0
...............................................................................................................GAGTGTGAGGGAGGGTTGTGGA...................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
...............................................................................................................GAGTGTGAGCGAGGGTTGT......................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0
..................................................................................................................TGTAAGAGAGGGTTGTGGA...................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0
................................................................................................................AGTGTGAGCGAGGGTTGTG........................................................................................................................ 19 2 1 1.00 1 0 0 1 0 0
...............................................................................................................GCCTGTGAGAGAGGGTTGTGGA...................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
................................................................................................................AGTGTGAGAGCGGGTTGTGGA...................................................................................................................... 21 3 2 1.00 2 0 2 0 0 0
................................................................................................................AGTGTGAGTGAGGGTTGTGG....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
.................................................................................................................GTGTGAGAGAGGCTTGTGGA...................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0
................................................................................................................GGTGTGAGAGAGGGTTGTGG....................................................................................................................... 20 2 2 1.00 2 1 1 0 0 0
...............................................................................................................TAGTGTGAGAGAGGGTTGTGGA...................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
..................................................................................................................TATGAGAGAGGGTTGTGGACG.................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0
....................................................................................................................TGAGAGAGGGTTGTGGATTT................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0
..................................................................................................................TGTGAGAGAGGGTTGTGGAT..................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0
.................................................................................................................GTATGAGCGAGGGTTGTGGA...................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0
.................................................................................................................GTGTGAGAGAGGGTTGTGGAGG.................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
...............................................................................................................GAGTGTGAGGGAGGGTTGTG........................................................................................................................ 20 2 1 1.00 1 0 1 0 0 0
.................................................................................................................GTGTGAGGGAGGGTTGTGG....................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
...............................................................................................................GCGTGTGAGAGAGGGTTGTGG....................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0
.................................................................................................................GTGTGAGAGAGGGTTGTTGA...................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0
...............................................................................................................GAGTGTGAGAGAGGGTTGTGGAC..................................................................................................................... 23 3 2 1.00 2 1 0 1 0 0
.................................................................................................................GTGTGACAGAGGGTTGTGGA...................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0
...............................................................................................................CTGTGTGAGAGAGGGTTGTGGA...................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0
...................................................................................................................GTGAGTGAGGGTTGTGGAATT................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
...................................................................................................................GTGAGTGAGGGTTGTGGAATTC.................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0
.................................................................................................................GTGTGAGAGAGGGTTGTGGATTT................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0
.................................................................................................................TTGTGAGAGAGGGTTGTGG....................................................................................................................... 19 2 4 0.75 3 3 0 0 0 0
..............................................................................................................AGCGTGTGAGAGAGGGTTGTGG....................................................................................................................... 22 3 3 0.67 2 0 2 0 0 0
.................................................................................................................GCGTGAGAGAGGGTTGTGG....................................................................................................................... 19 2 3 0.67 2 0 2 0 0 0
................................................................................................................AGTGTGAGGGAGGGTTGTGG....................................................................................................................... 20 2 3 0.67 2 1 1 0 0 0
...................................................................................................................GTGAGGGAGGGTTGTGGA...................................................................................................................... 18 1 3 0.67 2 0 2 0 0 0
..................................................................................................................TTTGAGAGAGGGTTGTGGA...................................................................................................................... 19 2 6 0.67 4 1 3 0 0 0
..............................................................................................................GGAGTGTGAGAGAGGGTTGTGG....................................................................................................................... 22 3 5 0.60 3 2 1 0 0 0
...............................................................................................................GAGTATGAGAGAGGGTTGTGG....................................................................................................................... 21 3 13 0.54 7 4 3 0 0 0
.................................................................................................................GTGTGAGGGAGGGTTGTGGAA..................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0
.................................................................................................................GTGTGAGACAGGGTTGTGGA...................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTGGAAG.................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
....................................................................................................................TGAGTGAGGGTTGTGGAA..................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0
.................................................................................................................CTGTGAGAGAGGGTTGTGG....................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0
.................................................................................................................GCGTGAGAGAGGGTTGTGGA...................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0
...................................................................................................................ATGAGAGAGGGTTGTGGAT..................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0
...............................................................................................................GAGCGTGAGAGAGGGTTGTGGA...................................................................................................................... 22 3 4 0.50 2 0 2 0 0 0
..................................................................................................................TGTGAGAGAGGGTTGTGGAGGGA.................................................................................................................. 23 3 2 0.50 1 0 1 0 0 0
.............................................................................................................TTGGGTGTGAGAGAGGGTTGTGG....................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0
.................................................................................................................GTGTGAGAGAGGGTCGTGGA...................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0
................................................................................................................GGTGTGAGAGAGGGTTGTGGAA..................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
.................................................................................................................GTGTGAGCGAGGGTTGTGGAAT.................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0
...............................................................................................................GGGTGTGAGAGAGGGTTGTGG....................................................................................................................... 21 2 2 0.50 1 0 1 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTGGAT..................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0
....................................................................................................................TGAGAGAGGGTTGTGGATCT................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0
.................................................................................................................GTGTTAGAGAGGGTTGTGGA...................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0
.................................................................................................................GTGTGAGAGATGGTTGTGG....................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0
..................................................................................................................TGTGAGGGAGGGTTGTGG....................................................................................................................... 18 1 2 0.50 1 0 0 1 0 0
................................................................................................................AGTGTGAGCGAGGGTTGT......................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0
..............................................................................................................AGAGTGTGAGGGAGGGTTGTGG....................................................................................................................... 22 3 7 0.43 3 1 2 0 0 0
.................................................................................................................GTTTGAGAGAGGGTTGTGG....................................................................................................................... 19 2 5 0.40 2 2 0 0 0 0
.................................................................................................................GTGTGAGAGAGGTTTGTGG....................................................................................................................... 19 2 5 0.40 2 2 0 0 0 0
................................................................................................................AGTATGAGAGAGGGTTGTGG....................................................................................................................... 20 3 20 0.40 8 6 2 0 0 0
..................................................................................................................TGTGAGAGATGGTTGTGG....................................................................................................................... 18 2 11 0.36 4 3 1 0 0 0
..............................................................................................................CGAGTGTGAGAGAGGGTTGTG........................................................................................................................ 21 3 9 0.33 3 0 3 0 0 0
.................................................................................................................GTGTGCGAGAGGGTTGTGGA...................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0
.................................................................................................................GTATCAGAGAGGGTTGTGGA...................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0
..............................................................................................................AGAGTGTGAGCGAGGGTTGTG........................................................................................................................ 21 3 6 0.33 2 0 1 1 0 0
.................................................................................................................GTGTGAGAGCGGGTTGTGG....................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0
..................................................................................................................CGTGAGAGAGGGTTGTGG....................................................................................................................... 18 2 6 0.33 2 2 0 0 0 0
.................................................................................................................GTGTGATAGAGGGTTGTG........................................................................................................................ 18 2 6 0.33 2 2 0 0 0 0
...............................................................................................................GAGTGTGAGAGACGGTTGTGGA...................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0
................................................................................................................AGTGTGAGAGAGGGTTGTGGAC..................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0
...............................................................................................................GAGTGTGAAAGAGGGTTGTGGA...................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0
..................................................................................................................TGTGATAGAGGGTTGTGGA...................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0
................................................................................................................GGTGTGAGAGAGGGTTGTG........................................................................................................................ 19 2 6 0.33 2 2 0 0 0 0
................................................................................................................AGTGTGAGGGAGGGTTGTGGA...................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0
...............................................................................................................CAGTGTGAGAGAGGGTTGTGG....................................................................................................................... 21 3 6 0.33 2 1 1 0 0 0
...............................................................................................................GAGTGTGAGAGAAGGTTGTGGA...................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0
.....................................................................................................................GAGAGAGGGTTGTGGATTT................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0
................................................................................................................AGTGTGAGGGAGGGTTGTG........................................................................................................................ 19 2 3 0.33 1 0 0 1 0 0
...............................................................................................................GAGTGTGAGGGAGGGTTGT......................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTGGAC..................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0
..................................................................................................................TGTGAGAGAGGGTTGTGCA...................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0
................................................................................................................AGTGTGAGACAGGGTTGTGGA...................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0
...................................................................................................................CTGAGAGAGGGTTGTGGA...................................................................................................................... 18 2 6 0.33 2 2 0 0 0 0
..............................................................................................................AGAGTGTGAGTGAGGGTTGT......................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0
.................................................................................................................CTGTGAGAGAGGGTTGTGGAA..................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
..............................................................................................................TTAGTGTGAGAGAGGGTTGTGG....................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0
................................................................................................................AGTGTGAGAGAAGGTTGTGGA...................................................................................................................... 21 3 7 0.29 2 0 1 1 0 0
..............................................................................................................AGCGTGTGAGAGAGGGTTGTG........................................................................................................................ 21 3 7 0.29 2 1 1 0 0 0
...............................................................................................................GAGTGTGATAGAGGGTTGTGG....................................................................................................................... 21 3 7 0.29 2 1 1 0 0 0
...............................................................................................................GGGTGTGAGAGAGGGTTGTG........................................................................................................................ 20 2 4 0.25 1 0 1 0 0 0
..............................................................................................................AGGGTGTGAGAGAGGGTTGTGG....................................................................................................................... 22 3 8 0.25 2 1 1 0 0 0
...................................................................................................................GTGATAGAGGGTTGTGGA...................................................................................................................... 18 2 8 0.25 2 1 1 0 0 0
.................................................................................................................GTGTGAGAGAGGGTTGTGGAGTT................................................................................................................... 23 3 4 0.25 1 0 1 0 0 0
...............................................................................................................TAGTGTGAGAGAGGGTTGTGG....................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
.................................................................................................................GTGTGAGAGAGGGTTGTGGG...................................................................................................................... 20 2 4 0.25 1 0 1 0 0 0
..................................................................................................................TGTGAGAGAGGATTGTGGA...................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0
...................................................................................................................TTGAGAGAGGGTTGTGGA...................................................................................................................... 18 2 20 0.25 5 4 1 0 0 0
...................................................................................................................GTGAGAGAGGGGTGTGGA...................................................................................................................... 18 2 20 0.25 5 5 0 0 0 0
................................................................................................................CGTGTGAGAGAGGGTTGTG........................................................................................................................ 19 2 4 0.25 1 1 0 0 0 0
..................................................................................................................TGTGAGAGAGGGTTGTGGC...................................................................................................................... 19 2 4 0.25 1 0 1 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTGAA...................................................................................................................... 18 2 13 0.23 3 1 2 0 0 0
...............................................................................................................TAGTGTGAGAGAGGGTTGTG........................................................................................................................ 20 3 19 0.21 4 2 2 0 0 0
...............................................................................................................GAGTGTGAGAGAGGGTTGTGCA...................................................................................................................... 22 3 5 0.20 1 0 1 0 0 0
.................................................................................................................CTGTGAGAGAGGGTTGTG........................................................................................................................ 18 2 5 0.20 1 1 0 0 0 0
...................................................................................................................GTGAGAGACGGTTGTGGA...................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0
.................................................................................................................GTGTGAGAGAGGGTTGTAGA...................................................................................................................... 20 2 5 0.20 1 1 0 0 0 0
.................................................................................................................GTGTGAGAGAAGGTTGTGG....................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0
...................................................................................................................GTGAGACAGGGTTGTGGA...................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0
...................................................................................................................GTGAGAGATGGTTGTGGA...................................................................................................................... 18 2 10 0.20 2 1 1 0 0 0
................................................................................................................ATTGTGAGAGAGGGTTGTGGA...................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0
...................................................................................................................GTGAGAGAAGGTTGTGGA...................................................................................................................... 18 2 11 0.18 2 1 1 0 0 0
..................................................................................................................TGTGAGACAGGGTTGTGG....................................................................................................................... 18 2 6 0.17 1 0 1 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTGCA...................................................................................................................... 18 2 6 0.17 1 0 1 0 0 0
..................................................................................................................TGTGAGAGAGGGTTGTGAA...................................................................................................................... 19 2 6 0.17 1 1 0 0 0 0
...............................................................................................................GAGTGTGAGAGAGGGTCGTGGA...................................................................................................................... 22 3 6 0.17 1 0 1 0 0 0
...............................................................................................................GAGTGTGAGAGAGGGTTTTGGA...................................................................................................................... 22 3 6 0.17 1 0 1 0 0 0
...............................................................................................................GAGTTTGAGAGAGGGTTGTGG....................................................................................................................... 21 3 6 0.17 1 0 1 0 0 0
...............................................................................................................GAGTGTGAGAGAGGGTTGTGGC...................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0
................................................................................................................AGTGTGTGAGAGGGTTGTGGA...................................................................................................................... 21 3 13 0.15 2 1 0 1 0 0
...............................................................................................................CAGTGTGAGAGAGGGTTGTG........................................................................................................................ 20 3 13 0.15 2 2 0 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTGGACTT................................................................................................................... 21 3 7 0.14 1 0 1 0 0 0
..................................................................................................................GGTGAGAGAGGGTTGTGGA...................................................................................................................... 19 2 7 0.14 1 0 0 1 0 0
.................................................................................................................GTATGAGAGAGGGCTGTGGA...................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0
................................................................................................................AGTGTGAGAGAGGGTTGTGGAG..................................................................................................................... 22 3 7 0.14 1 0 1 0 0 0
................................................................................................................AGTGTGAGAGAGGGCTGTGGA...................................................................................................................... 21 3 7 0.14 1 0 1 0 0 0
...................................................................................................................GTGAGAGTGGGTTGTGGA...................................................................................................................... 18 2 15 0.13 2 0 2 0 0 0
.................................................................................................................GTGTGAGAGAGGGTTGTGAATT.................................................................................................................... 22 3 8 0.13 1 1 0 0 0 0
................................................................................................................AGTGTGAGAGAGGGTTTTGGA...................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0
.................................................................................................................GTGTGGGAGAGGGTTGTGG....................................................................................................................... 19 2 8 0.13 1 1 0 0 0 0
.................................................................................................................GTTTGAGAGAGGGTTGTGGAA..................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0
...............................................................................................................AAGTGTGAGAGAGGGTTGTGGA...................................................................................................................... 22 3 8 0.13 1 0 1 0 0 0
...................................................................................................................GTGAGAGAGCGTTGTGGA...................................................................................................................... 18 2 8 0.13 1 0 1 0 0 0
......................................................................................................................AGTGAGGGTTGTGGAATT................................................................................................................... 18 2 8 0.13 1 1 0 0 0 0
..............................................................................................................TGAGTGTGAGAGAGGGTTGT......................................................................................................................... 20 2 8 0.13 1 0 1 0 0 0
.................................................................................................................GTTTGAGAGAGGGTTGTG........................................................................................................................ 18 2 16 0.13 2 2 0 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTGGC...................................................................................................................... 18 2 17 0.12 2 2 0 0 0 0
...................................................................................................................GTGAGGGAGGGTTGTGGAATT................................................................................................................... 21 3 9 0.11 1 1 0 0 0 0
...............................................................................................................GATTGTGAGAGAGGGTTGTGG....................................................................................................................... 21 3 9 0.11 1 0 1 0 0 0
...................................................................................................................GTGAGAGAGGGCTGTGGA...................................................................................................................... 18 2 9 0.11 1 0 1 0 0 0
..................................................................................................................TGTGAGAGAGGGTTGTGC....................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTCGA...................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0
.................................................................................................................GTGTGATTGAGGGTTATGGC...................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0
................................................................................................................AGTGTGAGACAGGGTTGTGG....................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0
..............................................................................................................GGAGTGTGAGAGAGGGTTGTG........................................................................................................................ 21 3 10 0.10 1 1 0 0 0 0
................................................................................................................AGTGTGAGAGCGGGTTGT......................................................................................................................... 18 3 20 0.10 2 1 1 0 0 0
................................................................................................................ATTGTGAGAGAGGGTTGTGG....................................................................................................................... 20 3 20 0.10 2 2 0 0 0 0
...............................................................................................................GAGTGTGAGAGAGGGCTGTGG....................................................................................................................... 21 3 20 0.10 2 0 2 0 0 0
......................................................................................................................AGAGAGGGTTGTGGAATTAT................................................................................................................. 20 3 10 0.10 1 0 1 0 0 0
..................................................................................................................TGTGAGAAAGGGTTGTGGAA..................................................................................................................... 20 3 20 0.10 2 0 0 2 0 0
...............................................................................................................GAGTGTGAGAGAGGGCTGTG........................................................................................................................ 20 3 20 0.10 2 1 1 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTGTA...................................................................................................................... 18 2 10 0.10 1 0 1 0 0 0
.................................................................................................................GTGTGAGAGAGGGCTGTGGAA..................................................................................................................... 21 3 10 0.10 1 1 0 0 0 0
....................................................................................................................TGAGAGAGGGTTGTGAATT.................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0
.................................................................................................................GTGTGCGAGAGGGTTGTGG....................................................................................................................... 19 2 10 0.10 1 0 1 0 0 0
................................................................................................................AGTGTGAGAGAGGGTTGTCG....................................................................................................................... 20 3 20 0.10 2 1 1 0 0 0
..................................................................................................................TGTGAGAGAGGGTCGTGG....................................................................................................................... 18 2 11 0.09 1 0 1 0 0 0
.................................................................................................................ATGTGAGAGAGGGTTGTG........................................................................................................................ 18 2 11 0.09 1 0 1 0 0 0
................................................................................................................ACTGTGAGAGAGGGTTGTGG....................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0
..................................................................................................................TGTGACAGAGGGTTGTGGAA..................................................................................................................... 20 3 11 0.09 1 0 0 1 0 0
...................................................................................................................GTGAGAGAGGGTTTTGGA...................................................................................................................... 18 2 12 0.08 1 1 0 0 0 0
..................................................................................................................TGTGAGCGAGGGTTTTGGAA..................................................................................................................... 20 3 13 0.08 1 0 1 0 0 0
..................................................................................................................TGTGAGAGAGGGTTGTAG....................................................................................................................... 18 2 13 0.08 1 0 1 0 0 0
..............................................................................................................AGAGTGTGAGGGAGGGTTGTG........................................................................................................................ 21 3 14 0.07 1 0 1 0 0 0
...............................................................................................................AAGTGTGAGAGAGGGTTGTGG....................................................................................................................... 21 3 14 0.07 1 1 0 0 0 0
...................................................................................................................GTGAGAGAGGGTTGCGGA...................................................................................................................... 18 2 14 0.07 1 1 0 0 0 0
..................................................................................................................TGTGAGAGAGGGCTGTGGAA..................................................................................................................... 20 3 14 0.07 1 0 1 0 0 0
...................................................................................................................GTGAGAGAGGATTGTGGA...................................................................................................................... 18 2 14 0.07 1 1 0 0 0 0
......................................................................................................................AGAGAGGGTTGTGGATTT................................................................................................................... 18 2 14 0.07 1 1 0 0 0 0
..................................ATTCAGTGCTGTTGCGGGG...................................................................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0
.................................................................................................................GTATGAGAGAGGGTTGTGAA...................................................................................................................... 20 3 15 0.07 1 0 1 0 0 0
...............................................................................................................GAGTTTGAGAGAGGGTTGTG........................................................................................................................ 20 3 15 0.07 1 1 0 0 0 0
.................................................................................................................GTATGTGAGAGGGTTGTGGA...................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0
................................................................................................................AGTCTGAGAGAGGGTTGTGG....................................................................................................................... 20 3 16 0.06 1 0 1 0 0 0
..................................................................................................................TGTGGGAGAGGGTTGTGG....................................................................................................................... 18 2 18 0.06 1 0 1 0 0 0
...............................................................................................................GAGTGTGAGGGAGGGTTG.......................................................................................................................... 18 2 18 0.06 1 0 0 1 0 0
...................................................................................................................GTGAGAGAGGGTTGTGAATT.................................................................................................................... 20 3 18 0.06 1 1 0 0 0 0
...................................................................................................................GTGAGAGAGGGTTGTGGT...................................................................................................................... 18 2 19 0.05 1 0 1 0 0 0
..................................................................................................................TGTGAGAGAGGGTTGAGGAA..................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
...................................................................................................................ATGAGAGAGGGTTGTGAAT..................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
.....................................................................................................................GAGAGAGGGTTGTGGAAG.................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0
..................................................................................................................GGTGAGAGAGGGTTGTGG....................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
...................................................................................................................GTGAGAGCGGGTTGTGGAA..................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
...................................................................................................................GTGAGAGAGGGATGTGGA...................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0
................................................................................................................................................GACTGTGCTTCCTCTGAAT........................................................................................ 19 3 20 0.05 1 1 0 0 0 0
..................................................................................................................TGTGAGAGAGGGATGTGGAA..................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
..............................................................................................................AGGGTGTGAGAGAGGGTTGT......................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
.................................................................................................................GTGTGAGAGAGGGTTGTT........................................................................................................................ 18 2 20 0.05 1 1 0 0 0 0
...............................................................................................................GAGTGTGAGAGAGGGTTGTGT....................................................................................................................... 21 3 20 0.05 1 0 1 0 0 0
...............................................................................................................GAGTGTGAGAGAGCGTTGTGG....................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0
................................................................................................................AGTGTGAGAGCGGGTTGTG........................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

CAAGTTATAGCCTAAATGTTTCACAATGGAGGTCTGAGTCACGACAAAGCCACTCACAAATAAATTTCCAAAAAGAAAGTAGATCGTCGAGTAAATTCAACGTTACACACACACACACTCACTCCCAACACCTACATACACACACTCACACGACGTAGACTTACGCAGATTTAACTAATTCACGAGAAACACTGTTTGTTTCAAGCTTAAAAACACGGTTGCAGACCGTTTTCTTCTTCCTTTTTGTTTTA
**************************************************(((((((((.....(((((....))))).....)))).))))).................(((.(((....((((((..(((((((((..((((.((....))))))....)))))))))............))))))....))).)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
...........................................................................................................................................................................TAACTAGTTGACGAGAAA.............................................................. 18 2 20 0.10 2 2 0
.........................................................................................................................................................................................................................GTTGGAGTCCGTTTTCTT................ 18 2 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004943:12256260-12256510 + dwi_3448 GTTCAATATCGGATTTACAAAGTGTTACCTCCAGACTCAGTGCTGTTTCGGTGAGTG-----------T---TTATT--TA-------AAG---------------------------------------------------------------GTT---TTTCTT------------------TC--A--------------------------------------------------------------TCTAGCAGCTCAT----------TTAAG-TTGCAAT--GTGTG-----------------TGTGTGTGAGTGAGGGTTGTGGATGTATGTGTGTGAG-TGTG---------------CTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAAGTTCGAATTTTTGTGCCAA----CGTCT-------------------------G-------------------GC-AAAAGAAGAAGG---AAAAA---CAAAAT
droVir3 scaffold_13047:8367410-8367649 - dvi_16028 GCTCCATTTCGGATTTACAAAGCGTTACCTCCAGGCTGAGCACAGTTTCGGTGAGTA-----------A-------G--GC-------AAAAGCCA-TTAGACG-------------------------------AAGCAGCTCATTTAAGTTGTACA----------------------------------------------------------------------------------------------------------------------------------------CGCACACAC-------ACGTGTGTGAGTAGGTG-TGTGTGTGTG--TGTGTGTG-T--------------GTGTGTGCGTCTT--AATGCGTCGTCTAAATTGATTAAGTGCACTTAGTGACAAACAAAGTTGGCAACGA---G-----------CT-------------------------G-------------------AA-CGACCAGGAAGA---ACAA----CAAAAT
droMoj3 scaffold_6540:27808324-27808560 + GCTCCATTTCGGATTTACAAAGCGTTACCTCCAGACTGAGCACAGTTTCGGTGAGTA-----------AGCCAAAAA--G-------------CCA-TTAGACG-------------------------------CAGCAGCTCATTTAGCTCGCAGA-----------------------------------------------------------------------------------------------------------------------------------CACACAG----------ACGCACATCTCT------CTC-TGTGTGTGTG--TGTGTGCG-T--------------GTGTTTGCGTCTC--AATGCGTCGTCTAAATTGATTAAGTGCACTTAGTGACAAACAAAGTTCGCAAC------------G--ACCT-------------------------G-------------------AA-CGGCCAGGAAGA---ATAA----CAAAAT
droGri2 scaffold_15074:1251682-1251990 + GCTCCATTTCGGATTTACAAAGTGTTACCTCCAGACTCAGCACAGTTTCGGTGAGTG-----------A-------G--CC-------AAAACCCA-TTAGACCCCATGAACAGCAAGCCAGCCAGCCAGCAGCAAGCCAGCTCATTTAAGTAGCTC---CTCCTT------------------TC--A--------------------------------------------------------------AC---------TTACGACTCCACACAAGGATACACACACA---CACACACAC-------AC---------------------------------GCG-T--------------GTGTGTGCGTCTC--AATGCGTCGTCTAAATTGATTAAGTGCACTTAGTGACAAACAAAGTTCGCATTTT---GCCAAACGTCCTTT-------------------------GCGCAGGAACACAGGATGAGGA-TG-AGCTGAAGA---ATAA----CCAAAT
dp5 2:12272935-12273153 + GTTCCATTTCAGATCTACAAAGCGTTACCTCCAGGCTCAGTGCCGTATCGGTGAGTCCTTTTTTGCAAT---G-------------------------GGGC----------------------------------ACGGGCTCATTTAAGTTGCAGG-----------------------------------------------------------------------------------------------------------------------------------CTCCAAGCTCCCACCCGTC---------------------------------------------------------GAACTGCATCTGCAACTGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAAATGTCGTCTCGTCT---------------CGTCCC-------------------GT----------------CTGGC---CGAAAT
droPer2 scaffold_0:8197965-8198201 - GTTCCATTTCAGATCTACAAAGCGTTACCTCCAGGCTCAGTGCCGTATCGGTAAGTG-----------T---GGGG----C-------ACGGGGCACGGGGC----------------------------------ACGGTCTCATTTAAGTTGCAGG-----------------------------------------------------------------------------------------------------------------------------------CTCCAAGCTCCCACCCGTC---------------------------------------------------------GAACTGCATCTGCAACTGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAAATGTCGTCTCGTCTCGTCTCGTCTCGTCTCGTCTC-------------------GT----------------CTGGC---CGAAAT
droAna3 scaffold_13340:9099729-9099944 + GATCCATTTCAGACCTCCAAAGCGTTACCTCCAGGCTTAGTGCAGTCTCGGTAAGTGGCAGATT----C---AGAAA--GC-------CAACTAGAAATGGA----------------------------------TGTGGCTCATTTAAGTTGCAGC-----------------------------------------------------------------------------------------------------------------------------------CCCCCAG----------TCCAACT-------------------------------------CCACCGCTTC----CCG------------GCTGCA---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG--------------------------------------------------------------GT-CGAGAATGGACGTAGATAAA--GCGGAAT
droBip1 scf7180000396712:249891-250099 + GATCCATTTCAGACCTCCAAAGCGTTACCTCCAGGCTTAGTGCAGTCTCGGTAAGTGGCAGATT----C---AGAAA--GC-------CA-------ATGGA----------------------------------TGTGGCTCATTTAAGTTGCAGC-----------------------------------------------------------------------------------------------------------------------------------CCCCAAG----------TCCGACT-------------------------------------CCACCGCTTC--------------CCG--GGTGCA---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGTATTCG--------------------------------------------------------------GT-CGAGAATGGACGTAGATAAA--GCGGAAT
droKik1 scf7180000302461:1950294-1950512 - GCTCCATCTCAGACCTCCAAAGCGTTACCTCCAGGCTCAGTGCGGTGTCGGTAAGTGC----------C---AGAGT--CCCTTTTCC-----CCGACTGGA----------------------------------TCGGGCTCATTTAACTTTCAGCC---------------CCAACTCT------------AA-------------------------------------------------------------------------------------------------------------------CT----------------CCA--------ACTC---------------------CAGCTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCTTTCG-------------GTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGC--CGGGAAT
droFic1 scf7180000454106:1261507-1261745 + GCTCCATCTCAGACCTCCAAAGCGTTACCTCCAGACTCAGTGCGGTGTCGGTAAGTA-----------C-----------T-------ACATTCCAACCGAA----------------------------------TGGGGCTCATTTAACTTGCAGTTTTGG---TCGCTCCTCCTAAT-----------GCCG----------------------------------------------------------------------------------------------------A----------TCCCACT-------------------------------------CCACCG--------ACGACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGCAGCAGAAGT
droEle1 scf7180000491280:4688747-4689012 - GCTCCATCTCAGACCTACAAAGCGTTACCTCCAGGCTCAGTGCGGTGTCGGTAAGTG-----------C---AGAAA--GC-------GATTTCCACCCGGA----------------------------------TCGGGCTCATTTAACTTGCAGCTTTGGCTTTGGCCGCTACAACTCCTCCATCAAC---GA-------------------------------------------------------------------------------------------------------------------CT----------------CCA--------ATTCCAAACTAC---GCTTGGCGGGCGACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAGTGGACG---ATAGC---AGAAAT
droRho1 scf7180000779175:35544-35793 + GCTCCATCTCAGACCTCCAAAGCGTTACCTCCAGGCTCAGTGCGGTGTCGGTAAGTG-----------C---AGGAA--CT-------GAGTTCCATTCGGA----------------------------------TCGGGCTCATTTAACTTGCAGCTTTGG---TCGCTCCTCCGACTCC------------GA-------------------------------------------------------------------------------------------------------------------TT----------------CCA--------ATTCCAAACC---CCGCTTT----GCAACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGC---AGAAAT
droBia1 scf7180000302402:5629559-5629835 - GCTCCATCTCAGACCTTCAAAGCGTTACCTCCAGGCTCAGTGCGGTGTCGGTAAGTT-----------G---AGGAA--CC-------GAGTTCCTCTCGGA----------------------------------TCGGGCTCATTTCACTTGCAGCTTTGG---TGGCTCCTCCGACTCC------A------ACTCCCCTACAAATCCAACTCCACCTCTAGCCCCAA------------------------------------------------------------------------------------------------CTCCG--------TGCCCAAC-T--------------GCGACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATGGC---TGAAAT
droTak1 scf7180000415711:936590-936851 - GCTCCATCTCAGACCTTCAAAGCGTTACCTCCAGACTCAGTGCGGTGTCGGTGAGTA-----------C---AGAAT--CC-------AAGTTCCCCTTGGA----------------------------------TCGGGCTCATTTAACTTGCTGCATTGG---TCGCTCCTCCGAATCC------AA----------------------------------ACCCAAACTCCATGGCCAACTACAAC---------------------------------------------------------------------------------------------------TTC---GCTTT----GCGACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGC---CGGAAT
droEug1 scf7180000409768:232563-232834 + GCTCCATCTCAGACCTACAAAGCGTTACCTCCAGGCTCAGTGCAGTGTCGGTAAGTG-----------TGG-GGAAAGTCCCTGTTCC-----CCA-TCAGA----------------------------------TCGGGCTCATTTAACTTGCAGGTTTGG---TCGCTCCTCCGACTCC------AAC---AACTCC-----G-----------------------------AACGCCAACTCCAACCTCTAGCAGCTTTT----------------------------------------------------------------------------------------------------CCAACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGCTG-GAAAAT
dm3 chr3R:18115234-18115490 + GCTCCATCTCAGATCTACAAAGCGTTACCTCCAGATTCAGTACGGTGTCGGTAAGTG-----------C---AGAAA--CC-------AAGTTCCACTTGGA----------------------------------TCGGGCTCATTTAACTTGCAGCTATGG---TCGCCTCTCCAACTCCTTCG------------------------------------------------------------------------ACATTTCC--------------------------------------------------------GACTCCTCCA--------AGTCCAGA-TACG---------------CTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GTCCGAAAATGGACG---ATGGC---CGAAAT
droSim2 3r:17642330-17642585 + GCTCCATCTCAGACCTACAAAGCGTTACCTCCAGATTCAGTACGGTGTCGGTAAGTG-----------C---AGAAA--CC-------AAGTTCCACTTGGA----------------------------------TCGGGCTCATTTAACTTGCAGCTATGG---TCGCCTCTCCAACTCCTCCG------------------------------------------------------------------------GCTTCTCC--------------------------------------------------------GACTCCTCCA--------AGTCCAGA-TACG---------------CTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATGGC---CGAAAT
droSec2 scaffold_0:18472809-18473064 + GCTCCATCTCAGACCTACAAAGCGTTACCTCCAGATTCAGTACGGTGTCGGTAAGTG-----------C---AGAAA--CC-------AAATTCCACTTGAA----------------------------------TCGGGCTCATTTAACTTGCAGCTATGG---TCGCCTCTCCAACTCCTCCA------------------------------------------------------------------------GCTTCTCC--------------------------------------------------------GACTCCTCCA--------AGTGCAGA-TACG---------------CTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATGGC---CGAAAT
droYak3 3R:18958922-18959021 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGC---CGAAAT
droEre2 scaffold_4820:9963953-9964225 - GCTCCATCTCAGACCTGCAAAGCGTTACCTCCAGATTCAGTACGGTGTCGGTAAGTG-----------C---AGAAA--GC-------GAGCTCCACTTGGA----------------------------------TCGGGCTCATTTAACTTGCAGCTATGG---TCGCCTCTCCAGCTCCTCCA-----GTTG----------------------------------------------------------------------------------------------CT----------------CCAACTCCT----CCGACTCCTACG--------AGTGCAGA-TAC---GCTGG----GCGACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGC---CGAAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GTTCAATATCGGATTTACAAAGTGTTACCTCCAGACTCAGTGCTGTTTCGGTGAGTG-----------T---TTATT--TA-------AAG---------------------------------------------------------------GTT---TTTCTT------------------TC--A--------------------------------------------------------------TCTAGCAGCTCAT----------TTAAG-TTGCAAT--GTGTG-----------------TGTGTGTGAGTGAGGGTTGTGGATGTATGTGTGTGAG-TGTG---------------CTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAAGTTCGAATTTTTGTGCCAA----CGTCT-------------------------G-------------------GC-AAAAGAAGAAGG---AAAAA---CAAAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................GTGAGTGAGGGTTGTGGAA.................................................................................................................................................................................................1912.00200200
.............................................................................................................................................................................................................................................................................................................................TGAGTGAGGGTTGTGGAA.................................................................................................................................................................................................1820.50101000
droVir3
GCTCCATTTCGGATTTACAAAGCGTTACCTCCAGGCTGAGCACAGTTTCGGTGAGTA-----------A-------G--GC-------AAAAGCCA-TTAGACG-------------------------------AAGCAGCTCATTTAAGTTGTACA----------------------------------------------------------------------------------------------------------------------------------------CGCACACAC-------ACGTGTGTGAGTAGGTG-TGTGTGTGTG--TGTGTGTG-T--------------GTGTGTGCGTCTT--AATGCGTCGTCTAAATTGATTAAGTGCACTTAGTGACAAACAAAGTTGGCAACGA---G-----------CT-------------------------G-------------------AA-CGACCAGGAAGA---ACAA----CAAAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................ACCTCCAGGCTGAGCACAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
...................AAGCGTTACCTCCAGGCTGAGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
..............TTACAAAGCGTTACCTCCAGGCTGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000100000000000000000000000000
.......................GTTACCTCCAGGCTGAGCACAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
..............TTACAAAGCGTTACCTCCAGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
.......................GTTACCTCCAGGCTGAGCACAGTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................AGTAGGTG-TGTGTGTGTG--TGTGTGTG-T--------------GTGTGTG.............................................................................................................................................................3411.001000000000000000000000000000000000000000000000000000000000100000
droMoj3
GCTCCATTTCGGATTTACAAAGCGTTACCTCCAGACTGAGCACAGTTTCGGTGAGTA-----------AGCCAAAAA--G-------------CCA-TTAGACG-------------------------------CAGCAGCTCATTTAGCTCGCAGA-----------------------------------------------------------------------------------------------------------------------------------CACACAG----------ACGCACATCTCT------CTC-TGTGTGTGTG--TGTGTGCG-T--------------GTGTTTGCGTCTC--AATGCGTCGTCTAAATTGATTAAGTGCACTTAGTGACAAACAAAGTTCGCAAC------------G--ACCT-------------------------G-------------------AA-CGGCCAGGAAGA---ATAA----CAAAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCTCCATTTCGGATTTACAAAGTGTTACCTCCAGACTCAGCACAGTTTCGGTGAGTG-----------A-------G--CC-------AAAACCCA-TTAGACCCCATGAACAGCAAGCCAGCCAGCCAGCAGCAAGCCAGCTCATTTAAGTAGCTC---CTCCTT------------------TC--A--------------------------------------------------------------AC---------TTACGACTCCACACAAGGATACACACACA---CACACACAC-------AC---------------------------------GCG-T--------------GTGTGTGCGTCTC--AATGCGTCGTCTAAATTGATTAAGTGCACTTAGTGACAAACAAAGTTCGCATTTT---GCCAAACGTCCTTT-------------------------GCGCAGGAACACAGGATGAGGA-TG-AGCTGAAGA---ATAA----CCAAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
GTTCCATTTCAGATCTACAAAGCGTTACCTCCAGGCTCAGTGCCGTATCGGTGAGTCCTTTTTTGCAAT---G-------------------------GGGC----------------------------------ACGGGCTCATTTAAGTTGCAGG-----------------------------------------------------------------------------------------------------------------------------------CTCCAAGCTCCCACCCGTC---------------------------------------------------------GAACTGCATCTGCAACTGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAAATGTCGTCTCGTCT---------------CGTCCC-------------------GT----------------CTGGC---CGAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GTTCCATTTCAGATCTACAAAGCGTTACCTCCAGGCTCAGTGCCGTATCGGTAAGTG-----------T---GGGG----C-------ACGGGGCACGGGGC----------------------------------ACGGTCTCATTTAAGTTGCAGG-----------------------------------------------------------------------------------------------------------------------------------CTCCAAGCTCCCACCCGTC---------------------------------------------------------GAACTGCATCTGCAACTGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAAATGTCGTCTCGTCTCGTCTCGTCTCGTCTCGTCTC-------------------GT----------------CTGGC---CGAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
GATCCATTTCAGACCTCCAAAGCGTTACCTCCAGGCTTAGTGCAGTCTCGGTAAGTGGCAGATT----C---AGAAA--GC-------CAACTAGAAATGGA----------------------------------TGTGGCTCATTTAAGTTGCAGC-----------------------------------------------------------------------------------------------------------------------------------CCCCCAG----------TCCAACT-------------------------------------CCACCGCTTC----CCG------------GCTGCA---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG--------------------------------------------------------------GT-CGAGAATGGACGTAGATAAA--GCGGAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GATCCATTTCAGACCTCCAAAGCGTTACCTCCAGGCTTAGTGCAGTCTCGGTAAGTGGCAGATT----C---AGAAA--GC-------CA-------ATGGA----------------------------------TGTGGCTCATTTAAGTTGCAGC-----------------------------------------------------------------------------------------------------------------------------------CCCCAAG----------TCCGACT-------------------------------------CCACCGCTTC--------------CCG--GGTGCA---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGTATTCG--------------------------------------------------------------GT-CGAGAATGGACGTAGATAAA--GCGGAATSizeHit CountTotal NormTotal
No Reads
droKik1
GCTCCATCTCAGACCTCCAAAGCGTTACCTCCAGGCTCAGTGCGGTGTCGGTAAGTGC----------C---AGAGT--CCCTTTTCC-----CCGACTGGA----------------------------------TCGGGCTCATTTAACTTTCAGCC---------------CCAACTCT------------AA-------------------------------------------------------------------------------------------------------------------CT----------------CCA--------ACTC---------------------CAGCTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCTTTCG-------------GTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGC--CGGGAATSizeHit CountTotal NormTotal
No Reads
droFic1
GCTCCATCTCAGACCTCCAAAGCGTTACCTCCAGACTCAGTGCGGTGTCGGTAAGTA-----------C-----------T-------ACATTCCAACCGAA----------------------------------TGGGGCTCATTTAACTTGCAGTTTTGG---TCGCTCCTCCTAAT-----------GCCG----------------------------------------------------------------------------------------------------A----------TCCCACT-------------------------------------CCACCG--------ACGACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGCAGCAGAAGTSizeHit CountTotal NormTotal
No Reads
droEle1
GCTCCATCTCAGACCTACAAAGCGTTACCTCCAGGCTCAGTGCGGTGTCGGTAAGTG-----------C---AGAAA--GC-------GATTTCCACCCGGA----------------------------------TCGGGCTCATTTAACTTGCAGCTTTGGCTTTGGCCGCTACAACTCCTCCATCAAC---GA-------------------------------------------------------------------------------------------------------------------CT----------------CCA--------ATTCCAAACTAC---GCTTGGCGGGCGACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAGTGGACG---ATAGC---AGAAATSizeHit CountTotal NormTotal
No Reads
droRho1
GCTCCATCTCAGACCTCCAAAGCGTTACCTCCAGGCTCAGTGCGGTGTCGGTAAGTG-----------C---AGGAA--CT-------GAGTTCCATTCGGA----------------------------------TCGGGCTCATTTAACTTGCAGCTTTGG---TCGCTCCTCCGACTCC------------GA-------------------------------------------------------------------------------------------------------------------TT----------------CCA--------ATTCCAAACC---CCGCTTT----GCAACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGC---AGAAATSizeHit CountTotal NormTotal
No Reads
droBia1
GCTCCATCTCAGACCTTCAAAGCGTTACCTCCAGGCTCAGTGCGGTGTCGGTAAGTT-----------G---AGGAA--CC-------GAGTTCCTCTCGGA----------------------------------TCGGGCTCATTTCACTTGCAGCTTTGG---TGGCTCCTCCGACTCC------A------ACTCCCCTACAAATCCAACTCCACCTCTAGCCCCAA------------------------------------------------------------------------------------------------CTCCG--------TGCCCAAC-T--------------GCGACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATGGC---TGAAATSizeHit CountTotal NormTotal
No Reads
droTak1
GCTCCATCTCAGACCTTCAAAGCGTTACCTCCAGACTCAGTGCGGTGTCGGTGAGTA-----------C---AGAAT--CC-------AAGTTCCCCTTGGA----------------------------------TCGGGCTCATTTAACTTGCTGCATTGG---TCGCTCCTCCGAATCC------AA----------------------------------ACCCAAACTCCATGGCCAACTACAAC---------------------------------------------------------------------------------------------------TTC---GCTTT----GCGACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGC---CGGAATSizeHit CountTotal NormTotal
No Reads
droEug1
GCTCCATCTCAGACCTACAAAGCGTTACCTCCAGGCTCAGTGCAGTGTCGGTAAGTG-----------TGG-GGAAAGTCCCTGTTCC-----CCA-TCAGA----------------------------------TCGGGCTCATTTAACTTGCAGGTTTGG---TCGCTCCTCCGACTCC------AAC---AACTCC-----G-----------------------------AACGCCAACTCCAACCTCTAGCAGCTTTT----------------------------------------------------------------------------------------------------CCAACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGCTG-GAAAATSizeHit CountTotal NormTotal
No Reads
dm3
GCTCCATCTCAGATCTACAAAGCGTTACCTCCAGATTCAGTACGGTGTCGGTAAGTG-----------C---AGAAA--CC-------AAGTTCCACTTGGA----------------------------------TCGGGCTCATTTAACTTGCAGCTATGG---TCGCCTCTCCAACTCCTTCG------------------------------------------------------------------------ACATTTCC--------------------------------------------------------GACTCCTCCA--------AGTCCAGA-TACG---------------CTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GTCCGAAAATGGACG---ATGGC---CGAAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................AAGCGTTACCTCCAGATTCAGTACGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TACAAAGCGTTACCTCCAGATTCAGTACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TACAAAGCGTTACCTCCAGATTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTTACCTCCAGATTCAGTACGGTGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCT-------------------------G-------------------GTCCGAAAATG.....................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................GCAGCTATGG---TCGCCTCTCCAACTCCTTCG------------------------------------------------------------------------ACATT.........................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GTTACCTCCAGATTCAGTACGGTGTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CATCTCAGATCTACAAAGCGTTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CTCCATCTCAGATCTACAAAGCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AGATCTACAAAGCGTTACCTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................ATTTAACTTGCAGCTATG..............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................TCCAACTCCTTCG------------------------------------------------------------------------ACATTTCC--------------------------------------------------------GAC...........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CTCCATCTCAGATCTACAAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CTCCATCTCAGATCTACAAAGCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCCATCTCAGATCTACAAAGCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GATTCAGTACGGTGTCGGTAAGTG-----------C---A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCGTTACCTCCAGATTCAGTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CCATCTCAGATCTACAAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCTACAAAGCGTTACCTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................TTACCTCCAGATTCAGTACGGTGTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
GCTCCATCTCAGATCTACAAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CAGCTATGG---TCGCCTCTCCAACTCCT.........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGCTCTTTGTGACAAACAAAC........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TCCTCCA--------AGTCCAGA-TACG---------------CTGCATCTG--.....................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CCAGATTCAGTACGGTGTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............TACAAAGCGTTACCTCCAGATTCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTG---GCCAA-TGTCGTCT-------------------------G-------------------G...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TCTG--AATGCG---TCTAAATTGATTAAGTGC..........................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TAAATTGATTAAGTGCTGC.......................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droSim2
GCTCCATCTCAGACCTACAAAGCGTTACCTCCAGATTCAGTACGGTGTCGGTAAGTG-----------C---AGAAA--CC-------AAGTTCCACTTGGA----------------------------------TCGGGCTCATTTAACTTGCAGCTATGG---TCGCCTCTCCAACTCCTCCG------------------------------------------------------------------------GCTTCTCC--------------------------------------------------------GACTCCTCCA--------AGTCCAGA-TACG---------------CTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATGGC---CGAAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GCTCCATCTCAGACCTACAAAGCGTTACCTCCAGATTCAGTACGGTGTCGGTAAGTG-----------C---AGAAA--CC-------AAATTCCACTTGAA----------------------------------TCGGGCTCATTTAACTTGCAGCTATGG---TCGCCTCTCCAACTCCTCCA------------------------------------------------------------------------GCTTCTCC--------------------------------------------------------GACTCCTCCA--------AGTGCAGA-TACG---------------CTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATGGC---CGAAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................AGCGTTACCTCCAGATTCAGTACGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
...........GACCTACAAAGCGTTACCTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
droYak3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGC---CGAAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GCTCCATCTCAGACCTGCAAAGCGTTACCTCCAGATTCAGTACGGTGTCGGTAAGTG-----------C---AGAAA--GC-------GAGCTCCACTTGGA----------------------------------TCGGGCTCATTTAACTTGCAGCTATGG---TCGCCTCTCCAGCTCCTCCA-----GTTG----------------------------------------------------------------------------------------------CT----------------CCAACTCCT----CCGACTCCTACG--------AGTGCAGA-TAC---GCTGG----GCGACTGCATCTG--AATGCG---TCTAAATTGATTAAGTGCTCTTTGTGACAAACAAACTTCGCATTTG---GCCAA-TGTCGTCT-------------------------G-------------------GT-CGAAAATGGACG---ATAGC---CGAAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 07:05 AM