ID:

dwi_3442

 Coordinate:

scf2_1100000004943:12037345-12037495 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.1 -12.1 -12.0 -12.0

Flybase annnotation

CDS [Dwil\GK13001-cds]; exon [dwil_GLEANR_13341:3]; intron [Dwil\GK13001-in]

No Repeatable elements found

mature
  1. scf2_1100000011846:1449-1469 +
  2. scf2_1100000004511:8418408-8418428 -
  3. scf2_1100000004511:8582054-8582074 -
  4. scf2_1100000004540:1348638-1348658 -
  5. scf2_1100000004938:40171-40191 -
  6. scf2_1100000004943:3676607-3676627 +
  7. scf2_1100000004943:12027966-12027986 +
  8. dwi_3442  scf2_1100000004943:12037460-12037480 -
  9. scf2_1100000004963:2529231-2529251 -
  10. scf2_1100000004963:2531751-2531771 +
  11. scf2_1100000004963:2565401-2565421 +
star
  1. scf2_1100000011846:1506-1526 +
  2. scf2_1100000004569:56486-56506 +
  3. scf2_1100000004943:12028023-12028043 +
  4. dwi_3442  scf2_1100000004943:12037403-12037423 -
  5. scf2_1100000004909:11285048-11285068 +
  6. scf2_1100000004963:2529174-2529194 -
  7. scf2_1100000004963:2531810-2531830 +
  8. scf2_1100000004963:2565458-2565478 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TACCGTACACGAGCTAAAGATAGAGCTTCAGAGTCTTCTCGATATTCAGGCGGAAACATTGGAGATTTCTGCTTCTGATGTAACGTGTGACGATTCAGATCTTTTAATAGAAGTTGCTGGTCTAGGCAACAAGAAACAAATTAAGCCGGTTGTGTCTTGCTATGAAGGCAACAATTTTGTGTGCTTGATTTTCTCTTCAAGCCGAGGATATTGCGGTTCCATTGGTCGATAATTCGATGTCAGACCCAAGT
*****************************************************************...............(((..(((........................((((((......)))))).....)))..)))************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M045
female body
 V118
embryo
 M020
head
..............TAAAGATAGAGCTTCAGAGTC........................................................................................................................................................................................................................ 21 0 2 1.00 2 2 0 0 0
.................................................................TTTCTGCTTCTGATGTAACGT..................................................................................................................................................................... 21 0 11 0.36 4 4 0 0 0
...............................................................................................................................................................................................................ATCTTGCGATTCCATTGGT......................... 19 2 11 0.27 3 0 0 3 0
.....................AGAGCATTAGAGCCTTCTCG.................................................................................................................................................................................................................. 20 3 8 0.13 1 0 1 0 0
..........................................................................................................................TAGGCAACAAGAAACAAATTA............................................................................................................ 21 0 8 0.13 1 1 0 0 0
..............................................................................................................................................................................................................GATATTGCGGTTCCATTGGTCGA...................... 23 0 9 0.11 1 0 1 0 0
................................................................................................................................................................................................CTCTTCAAGCCGAGGATATTGCGGT.................................. 25 0 9 0.11 1 0 1 0 0
.................................................................................................................................CAAGAAACAAATTAAGCCGGTTGTGTC............................................................................................... 27 0 9 0.11 1 0 1 0 0
......................................................................................................TTTAATAGAAGTTGCTGGTCTAGGCA........................................................................................................................... 26 0 19 0.11 2 1 1 0 0
........................................................................................................TAATAGAAGTTGCTGGTCTAG.............................................................................................................................. 21 0 19 0.11 2 2 0 0 0
.......................................................................................................TTAATAGAAGTTGCTGGTCTA............................................................................................................................... 21 0 19 0.11 2 2 0 0 0
..................................................................................................................................AAGAAACAAATTAAGCCGGTT.................................................................................................... 21 0 10 0.10 1 1 0 0 0
................................................................................................................................ACAAGAAACAAATTAAGCCGG...................................................................................................... 21 0 10 0.10 1 1 0 0 0
............................................................................................................AGAAGTTGCTGGTCTAGGCA........................................................................................................................... 20 0 20 0.10 2 2 0 0 0
.................................................................TTTCTGCTTCTGATGTAACGTC.................................................................................................................................................................... 22 1 11 0.09 1 1 0 0 0
............................................................GGAGATTTCTGCTTCTGATGT.......................................................................................................................................................................... 21 0 13 0.08 1 0 0 0 1
.............................................................................................TTCAGATCTTTTAATAGAAGTTGCT..................................................................................................................................... 25 0 16 0.06 1 0 0 1 0
...................................................................TCTGCTTCTGATGTAACGTTTG.................................................................................................................................................................. 22 1 17 0.06 1 1 0 0 0
.....................................................................................................TTTTAATAGAAGTTGCTGGTCTAGGCA........................................................................................................................... 27 0 19 0.05 1 1 0 0 0
..........................................................................................................ATAGAAGTTGCTGGTCTAGGCA........................................................................................................................... 22 0 19 0.05 1 1 0 0 0
...................................................GGAAACATTGGAGATTTCTGC................................................................................................................................................................................... 21 0 19 0.05 1 1 0 0 0
.......................................................................................................TTAATAGAAGTTGCTGGTC................................................................................................................................. 19 0 19 0.05 1 0 0 0 1
..............................................................................................TCAGATCTTTTAATAGAAGT......................................................................................................................................... 20 0 19 0.05 1 0 1 0 0
......................................................................................................TTTAATAGAAGTTGCTGGTCTAGGCAA.......................................................................................................................... 27 0 19 0.05 1 0 0 1 0
.....................................................................................................TTTTAATAGAAGTTGCTGGTCTAGGCTA.......................................................................................................................... 28 1 19 0.05 1 1 0 0 0
.....................................................................................................TTTTAATAGAAGTTGCTGGTCTA............................................................................................................................... 23 0 19 0.05 1 1 0 0 0
...........................................................................................................TAGAAGTTGCTGGTCTAGGCA........................................................................................................................... 21 0 19 0.05 1 1 0 0 0
..........................................................................................................ATAGAAGTTGCTGGTCTAGG............................................................................................................................. 20 0 19 0.05 1 1 0 0 0
...............................................................................................................................................................CTATGAAGGCAACAACTTTGT....................................................................... 21 1 20 0.05 1 1 0 0 0
...............................................................................................................................................................GTATGAAGGCAACCATTTTG........................................................................ 20 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

ATGGCATGTGCTCGATTTCTATCTCGAAGTCTCAGAAGAGCTATAAGTCCGCCTTTGTAACCTCTAAAGACGAAGACTACATTGCACACTGCTAAGTCTAGAAAATTATCTTCAACGACCAGATCCGTTGTTCTTTGTTTAATTCGGCCAACACAGAACGATACTTCCGTTGTTAAAACACACGAACTAAAAGAGAAGTTCGGCTCCTATAACGCCAAGGTAACCAGCTATTAAGCTACAGTCTGGGTTCA
************************************************************************************************************...............(((..(((........................((((((......)))))).....)))..)))***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body
................TTCTATCTCGAAGTCTCAGAAGAGCTAT............................................................................................................................................................................................................... 28 0 2 1.50 3 1 0 2 0
.................TCTATCTCGAAGTCTCAGAAGAGCTAT............................................................................................................................................................................................................... 27 0 2 1.50 3 0 1 2 0
......................CTCGAAGTCTCAGAAGAGCTATAAGT........................................................................................................................................................................................................... 26 0 5 1.20 6 6 0 0 0
.....................................................................................ACACTGCTAAGTCTAGAAATTTATCTT........................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................GGTAACCAGCTATTAAGCTACAGTCT....... 26 0 1 1.00 1 1 0 0 0
ATGGCATGTGCTCGATTTCTATCT................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.......................................................................GAAGACTACATTGCACACTGCTAAGT.......................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0
............................................................................................................................................................................................................TCCTATAACGCCAAGGTAACCAGCTAT.................... 27 0 9 0.56 5 2 0 3 0
....................................AGAGCTATAAGTCCGCCTTTGTAACCT............................................................................................................................................................................................ 27 0 4 0.50 2 2 0 0 0
...........TCGATTTCTATCTCGAAGTCTCAGA....................................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0
....................ATCTCGAAGTCTCAGAAGAGCTATAAG............................................................................................................................................................................................................ 27 0 2 0.50 1 1 0 0 0
.....................TCTCGAAGTCTCAGAAGAGCTATAAGT........................................................................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0
..........CTCGATTTCTATCTCGAAGTCTCAGAA...................................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0
............................................................................................................................................................................................AAAAGAGAAGTTCGGGTCCTATAACGC.................................... 27 1 2 0.50 1 1 0 0 0
.......................TCGAAGTCTCAGAAGAGCTATAAGT........................................................................................................................................................................................................... 25 0 5 0.40 2 1 1 0 0
.......................................................TGTAACCTCTAAAGACGAAGACTACAT......................................................................................................................................................................... 27 0 8 0.38 3 2 1 0 0
..........................................................................................................................................TTAATTCGGCCAACACAGAACGATACT...................................................................................... 27 0 20 0.35 7 5 2 0 0
..............................................................TCTAAAGACGAAGACTACATTGCAC.................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0
...........................................................................................................................................TAATTCGGCCAACACAGAACGATACT...................................................................................... 26 0 20 0.25 5 5 0 0 0
...............................................................................................................................................TCGGCCAACACAGAACGATACTTCCGT................................................................................. 27 0 20 0.25 5 5 0 0 0
.............................................................................................................................................................................................................CCTATAACGCCAAGGTAACCAGCTAT.................... 26 0 9 0.22 2 1 1 0 0
.................................................................................................................................................................................................AGAAGTTCGGCTCCTATAACGCCAAGGT.............................. 28 0 9 0.22 2 2 0 0 0
..................................................................................................................................................................................................GAAGTTCGGCTCCTATAACGCCAAGGT.............................. 27 0 9 0.22 2 1 1 0 0
........................CGAAGTCTCAGAAGAGCTATAAGT........................................................................................................................................................................................................... 24 0 5 0.20 1 0 0 1 0
......................CTCGAAGTCTCAGAAGATCTATAAGT........................................................................................................................................................................................................... 26 1 5 0.20 1 0 0 1 0
......................CTCGAAGTCTCAGAAGAGCTA................................................................................................................................................................................................................ 21 0 5 0.20 1 1 0 0 0
...............................................................CTAAAGACGAAGACTACATTG....................................................................................................................................................................... 21 0 12 0.17 2 0 0 2 0
..........................................................................................................................................TTAATTCGGCCAACACAGAACGAT......................................................................................... 24 0 20 0.15 3 2 1 0 0
................................................CCGCCATTGTAACCTGTCAAG...................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0
...................................................................................................................CGACCAGATCCGTTGTTCT..................................................................................................................... 19 0 7 0.14 1 1 0 0 0
............................................................................................................................CCGTTGTTCTTTGTTTAATT........................................................................................................... 20 0 8 0.13 1 0 0 0 1
.....................................................................................................................ACCAGATCCGTTGTTCTTTGTTTAAT............................................................................................................ 26 0 8 0.13 1 1 0 0 0
............................................................CCTCTAAAGACGAAGACTACATT........................................................................................................................................................................ 23 0 8 0.13 1 1 0 0 0
........................................................GTAACCTCTAAAGACGAAGACTACAT......................................................................................................................................................................... 26 0 8 0.13 1 1 0 0 0
........................................................GTAACCTCTAAAGACGAAGACTACATT........................................................................................................................................................................ 27 0 8 0.13 1 0 1 0 0
................................................................................................................................................................................................................ATAACGCCAAGGTAACCAGCTATT................... 24 0 9 0.11 1 1 0 0 0
.........................................................................................................................................................................................................ATCTCCTATAACGCCAAGGTAACCAGC....................... 27 2 9 0.11 1 1 0 0 0
.........................................................................................................................................................................................................GGCTCCTATAACGCCAAGGTAACCAGCT...................... 28 0 9 0.11 1 1 0 0 0
...............................................................................................................................................................................................AGAGAAGTTCGGCTCCTATAACGC.................................... 24 0 9 0.11 1 1 0 0 0
....................................................................................................................................................................................................................CGCCAAGGTAACCAGCTATTAAGC............... 24 0 9 0.11 1 1 0 0 0
.........................................................................................................................................................................................................GGCTCCTATAACGCCAAGGTAACCAGC....................... 27 0 9 0.11 1 1 0 0 0
...................................................................................................................................................................................................................ACGCCAAGGTAACCAGCTATTAAGC............... 25 0 9 0.11 1 1 0 0 0
.......................................................................................................................................................................................................TCGGCTCCTATAACGCCAAGGTAACC.......................... 26 0 9 0.11 1 1 0 0 0
..........................................................................................................................................TTAATTCGGCCAACACAGAACGATACTT..................................................................................... 28 0 20 0.10 2 2 0 0 0
..............................................................................................................................GTTGTTCTTTGTTTAATTCG......................................................................................................... 20 0 11 0.09 1 0 0 0 1
......................CCCGAAGTGTCAGAAGAGCC................................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 1
.............................................................CTCTAAAGACGAAGACTACATT........................................................................................................................................................................ 22 0 12 0.08 1 0 0 0 1
..............................................................TCTAAAGACGAAGACTACATT........................................................................................................................................................................ 21 0 13 0.08 1 0 0 0 1
......................................................TTGTAACCTCTAAAGACGAAGACTAC........................................................................................................................................................................... 26 0 13 0.08 1 0 1 0 0
.........................................................TAACCTCTAAAGACGAAGA............................................................................................................................................................................... 19 0 14 0.07 1 0 1 0 0
.................TCTTTCGCGAAGTCCCAGA....................................................................................................................................................................................................................... 19 3 18 0.06 1 1 0 0 0
.............................................................CTCTAAAGACGAAGACTAC........................................................................................................................................................................... 19 0 18 0.06 1 0 0 1 0
.................................................................................................CTAGAAAATTATCTTCAACGACCAGAT............................................................................................................................... 27 0 18 0.06 1 1 0 0 0
.....................................................................................................AAAATTATCTTCAACGACCAGATCCGT........................................................................................................................... 27 0 19 0.05 1 1 0 0 0
.....................................................................................................................................TTTGTTTAATTCGGCCAACACAGAACG........................................................................................... 27 0 20 0.05 1 0 1 0 0
..................................................................................................................................................GCCAACACAGAACGATACTT..................................................................................... 20 0 20 0.05 1 0 0 0 1
........................................................................................................................................GTTTAATTCGGCCAACACAGAACGATACT...................................................................................... 29 0 20 0.05 1 1 0 0 0
................................................................................................................................................................................................................ATAACGCCATGGTAAGTAG........................ 19 3 20 0.05 1 0 1 0 0
................................................................................................................................................CGGCCAACACAGAACGATACTTCCGT................................................................................. 26 0 20 0.05 1 1 0 0 0
...............................................................................................................................................TCGGCCAACACAGAACGAT......................................................................................... 19 0 20 0.05 1 0 0 1 0
...............................................................................................................................................TCGGCCAACACAGAACGATACT...................................................................................... 22 0 20 0.05 1 1 0 0 0
...............................................................................................................................................TCGGCCAACACAGAACGATACTTCCG.................................................................................. 26 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004943:12037295-12037545 - dwi_3442 TACCGTACACGAGCTAAAGATAGAGCTTCAGAGTCTTCTCGATATTCAGGCGGAAACATTGGAGATTTCTGCTTCTGATGTAACGTGTGACGATTCAGATCTTTTAATAGAAGTTGCTGGTCTAGGCAACAAGAAACAAATTAAGCCGGTTGTGTCTTGCTATGAAGGCAACAATTTTGTGTGCTTGATTTTCTCTTCAAGCCGAGGATATTGCGGTTCCATTGGTCGATAATTCGATGTCAGACCCAAGT
droAna3 scaffold_13250:371360-371402 + C------------------------------------------------------------------------------------------GATATAAATCTTTTAATAAAAGCTGCCACTTGAAGTTACAAG----------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000776529:133502-133550 - T------------------------------------------------------------------------------------------------------TTAATACAAGTAGTCAAAATAAACAAAACAAAACAAATAAAGCCAGTT----------------------------------------------------------------------------------------------------
droTak1 scf7180000415658:41188-41232 - T-----------------------------------------------------------------------------------------------------------------------------------------------------TGTATGTTACTATTAAAACAACAAGTTTCTTTACAAGATTTTCT---------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TACCGTACACGAGCTAAAGATAGAGCTTCAGAGTCTTCTCGATATTCAGGCGGAAACATTGGAGATTTCTGCTTCTGATGTAACGTGTGACGATTCAGATCTTTTAATAGAAGTTGCTGGTCTAGGCAACAAGAAACAAATTAAGCCGGTTGTGTCTTGCTATGAAGGCAACAATTTTGTGTGCTTGATTTTCTCTTCAAGCCGAGGATATTGCGGTTCCATTGGTCGATAATTCGATGTCAGACCCAAGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............TAAAGATAGAGCTTCAGAGTC........................................................................................................................................................................................................................2121.00200200
.................................................................TTTCTGCTTCTGATGTAACGT.....................................................................................................................................................................21110.36400400
..........................................................................................................................TAGGCAACAAGAAACAAATTA............................................................................................................2180.13100100
..............................................................................................................................................................................................................GATATTGCGGTTCCATTGGTCGA......................2390.11101000
................................................................................................................................................................................................CTCTTCAAGCCGAGGATATTGCGGT..................................2590.11101000
.................................................................................................................................CAAGAAACAAATTAAGCCGGTTGTGTC...............................................................................................2790.11101000
......................................................................................................TTTAATAGAAGTTGCTGGTCTAGGCA...........................................................................................................................26190.11201100
........................................................................................................TAATAGAAGTTGCTGGTCTAG..............................................................................................................................21190.11200200
.......................................................................................................TTAATAGAAGTTGCTGGTCTA...............................................................................................................................21190.11200200
..................................................................................................................................AAGAAACAAATTAAGCCGGTT....................................................................................................21100.10100100
................................................................................................................................ACAAGAAACAAATTAAGCCGG......................................................................................................21100.10100100
............................................................................................................AGAAGTTGCTGGTCTAGGCA...........................................................................................................................20200.10200200
.................................................................TTTCTGCTTCTGATGTAACGTC....................................................................................................................................................................22110.09100100
............................................................GGAGATTTCTGCTTCTGATGT..........................................................................................................................................................................21130.08110000
.............................................................................................TTCAGATCTTTTAATAGAAGTTGCT.....................................................................................................................................25160.06100010
.....................................................................................................TTTTAATAGAAGTTGCTGGTCTAGGCA...........................................................................................................................27190.05100100
..........................................................................................................ATAGAAGTTGCTGGTCTAGGCA...........................................................................................................................22190.05100100
...................................................GGAAACATTGGAGATTTCTGC...................................................................................................................................................................................21190.05100100
.......................................................................................................TTAATAGAAGTTGCTGGTC.................................................................................................................................19190.05110000
..............................................................................................TCAGATCTTTTAATAGAAGT.........................................................................................................................................20190.05101000
......................................................................................................TTTAATAGAAGTTGCTGGTCTAGGCAA..........................................................................................................................27190.05100010
.....................................................................................................TTTTAATAGAAGTTGCTGGTCTA...............................................................................................................................23190.05100100
...........................................................................................................TAGAAGTTGCTGGTCTAGGCA...........................................................................................................................21190.05100100
..........................................................................................................ATAGAAGTTGCTGGTCTAGG.............................................................................................................................20190.05100100
droAna3
C------------------------------------------------------------------------------------------GATATAAATCTTTTAATAAAAGCTGCCACTTGAAGTTACAAG----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droRho1
T------------------------------------------------------------------------------------------------------TTAATACAAGTAGTCAAAATAAACAAAACAAAACAAATAAAGCCAGTT----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
T-----------------------------------------------------------------------------------------------------------------------------------------------------TGTATGTTACTATTAAAACAACAAGTTTCTTTACAAGATTTTCT---------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 07:09 AM