dwi_344

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATCCAATGGTCGTGATGTTTGTGATTGCATGAATGACGATTGCGATGGATGTTGGTCCGCTTGCCTGTCCTGCGGGTCTACAAAATGTGGTCCCCAGTGCAGGGTTAATCGAAAGTTTTTTTATGAGTGTATTGTGTACGATGGAAAAGATTTGTCTATTGTTAATAAGTACTTTCCTAGTTCTAAGATCAGTATGTAATTTTATGTGAAGAAATAAATTAAGAATCAATTGCTATTTATCGAAATATTAC **************************************************************************************..(((...(((((.(((...(((.(((....))).)))....))).)))))...))).*******************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V118 embryo	V117 male body	M045 female body	M020 head
........................................................................................GGTCCCCAGTGCAGGGTTAAT..............................................................................................................................................	21	0	1	1.00	1	1	0	0	0
....................GTGATTGCATGAATGACGATTGC................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0
............................................................................................................................GAGTGTATTGTGTACGATGGAA.........................................................................................................	22	0	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................GTATGTAATTTTATGTGAAGA.......................................	21	0	1	1.00	1	1	0	0	0
.................................................................................................................................................AAAGATTTGTCTATTGTTAATAAGTACT..............................................................................	28	0	1	1.00	1	0	1	0	0
................................................................................CAAAATGTGGTCCCCAGTGCAGG....................................................................................................................................................	23	0	1	1.00	1	0	0	1	0
......................................................................................................................................TGTACGATGGAAAAGATTTGTCTAT............................................................................................	25	0	1	1.00	1	1	0	0	0
..........................................................GCTTGCCTGTCCTGCGGGT..............................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
............................................................................TCTACAAAATGTGGTCCCCAGTGCA......................................................................................................................................................	25	0	1	1.00	1	0	0	1	0
....AATGGTCGTGATGTTTGTG....................................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
.......................................................................................................................................GTACGATGGAAAAGATTTGTCTATT...........................................................................................	25	0	1	1.00	1	0	1	0	0
................................................................................................................................GTATTGTGTACGATGGAA.........................................................................................................	18	0	1	1.00	1	1	0	0	0
............................ATGAATGACGATTGCGATGGAT.........................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0
.....................................................................................................................................GTGTACGATGGAAAAGATTT..................................................................................................	20	0	1	1.00	1	1	0	0	0
..................................GACGATTGCGCTGGTTGATG.....................................................................................................................................................................................................	20	3	9	0.33	3	0	0	3	0
........GTCGTGTTGTTTGGGAATGCA..............................................................................................................................................................................................................................	21	3	4	0.25	1	0	0	1	0
...................................ACGATTGTGCTGGATGTT......................................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	1
........GTCGTGTTGTTTGGGAATGC...............................................................................................................................................................................................................................	20	3	6	0.17	1	0	0	1	0
..................................TACGTTTGCGATGGATGTT......................................................................................................................................................................................................	19	2	11	0.09	1	1	0	0	0
.........TCGTGTTGTTTGGGAATGC...............................................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0

TAGGTTACCAGCACTACAAACACTAACGTACTTACTGCTAACGCTACCTACAACCAGGCGAACGGACAGGACGCCCAGATGTTTTACACCAGGGGTCACGTCCCAATTAGCTTTCAAAAAAATACTCACATAACACATGCTACCTTTTCTAAACAGATAACAATTATTCATGAAAGGATCAAGATTCTAGTCATACATTAAAATACACTTCTTTATTTAATTCTTAGTTAACGATAAATAGCTTTATAATG *******************************************************************************************************..(((...(((((.(((...(((.(((....))).)))....))).)))))...))).**************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body
..............................................................CGGACAGGACGCCCAGATGT.........................................................................................................................................................................	20	0	1	1.00	1	1
.........................................................................................................................................................................................TCTAGTCATACATTAAAATACACTTCT.......................................	27	0	1	1.00	1	1
...........................................................................................................................................................................GAAAGGATCAAGATTCTAGTCATACAT.....................................................	27	0	1	1.00	1	1
..........................................................GGAACGGACAGGACACCCCGA............................................................................................................................................................................	21	3	1	1.00	1	1
.............................................................ACGGCCAGGACGCGCAGAC...........................................................................................................................................................................	19	3	11	0.09	1	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004382:1075994-1076244 +	dwi_344	ATCCAATGGTCGTGATGTTT---------------------------------------------------------------------------------GTGATTGCATGAATGACGATTGCGATGGATGTTGGTCCGCTTGCCTGTCCTGCGGGTCTACAAAATGTGGTCCCCAGTGCAGGGTTAATCGAAAGTTTTTTTATGAGTGTATTGTGTACGATGGAAAAGATTTGTCTATTGTTAATAAGTACTTTCCTAGTTCT------------------------------------AA-------------------GAT-CAGTATGT---AATTTTATGTGAAGAAATA---------AATTAAG----------------------------AATCAATTGCTATTTATCGAAATATTAC
droVir3	scaffold_12963:15915644-15915834 +		GTCCAATGGATTAGACGTTT---------------------------------------------------------------------------------GTGATTGCATGAACGAAGAATGTGATGGATGTTGGTACGAGTGCCGCAGTTGTGGCTCAACCAGATGTGGTCCGCAATGTCGCGTCAATAGAAAGTTCTTTTATGAAAACATTGTGTATGATGGCAAAGACTTAACAATAACCAACAAGCATCTTCCTGGCAAA------------------------------------AT-------------------G-----------------------------------------------------------------------------------------------------TAAT
droMoj3	scaffold_6500:18921622-18921801 +		ATCCAATGGCTTAGATGTCT---------------------------------------------------------------------------------GCGACTGTATGAACGAGCAATGTAGTGGCTGTTGGTACGAGTGCCGCAATTGTGGGTCAACCAGATGTGGTCCACAGTGTCGCGTCAATCGCAAGTTTTTCTATGAAAATATTGTGTATGACGGCAAAGATCTGACAATATCCAACAAATACTGTTCTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15252:8317890-8318149 +		ATACAGCGATTTGGACGTCT---------------------------------------------------------------------------------GCGATTGCATGAACGATGAGTGCAGTGGATGCTGGTACGAGTGTCGCATTTGTGGCTCTACCCGATGTGGTCCACAGTGTCGCGTTAATCGAAAGTTCTTCTATGAGACCATTGTGTATGATGGTAAGGATCTGACCATATCCAATAAACATCTGCCTGGGAAA------------------------------------AT-------------------GTA-ATGCATTT---AATTATGTGTAAGCGAATAGTGTTTTTAAAAGTGT----------------------------AAGCAATTGTCTTTTGTAATTGTAATAA
dp5	3:82094-82373 +		CTACAATGGATTAGACATTT---------------------------------------------------------------------------------GCGACTGCATGAGCGAAGAGTGTGATGGATGCTGGTACGAATGTCCAAGCTGTGGTTCTACCAGGTGCGGTCCTACCTGTAGAGCTAATCGAAAGTTTTTCTACGAAGGAATGAACCACGATGGAAAAGACTTATCCATAACCAATAAATTCCTTCCAAAAT--AAACT---------------------------GAAAATTAGTTTAAAAATTAAAAATGTATGCCTATGACGCGAA--------------------------------CC----TAGGTCAGGAATTAGTTTTAAGTACCAATAA--ATGTATTAATATTTTAT
droPer2	scaffold_2:270431-270710 +		CTACAATGGATTAGACATTT---------------------------------------------------------------------------------GCGACTGCATGAGCGAAGAGTGTGATGGATGCTGGTACGAATGTCCAAGCTGTGGTTCTACCAGGTGCGGTCCTACCTGTAGAGCTAATCGAAAGTTTTTCTACGAAGGAATGAACCACGATGGAAAAGACTTATCCATAACCAATAAATTCCTTCCAAAAT--AAACT---------------------------GAAAATTAGTTTAAAAATTAAAAATGTATGCCTATGACGCGAA--------------------------------CC----TAGGTCAGGAATTAGTTTTAAGTACCAATAA--ATGTATTAATATTTTAT
droAna3	scaffold_13266:19591718-19591870 -		-----------------------------------------------------------------------------------------------------GTGACTGTATGAATGAAGAGTGTGAAGGTTGTTGGTACGAATGCCGCATTTGTGGATCTCTGAGGTGCGGCCCTCAATGTCGAACAAATCGAAAGTTTTTTTATGAAGGCATTATTTACGATGGAAAAGACTTATCTATAATTAATAAATACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395864:74527-74679 +		-----------------------------------------------------------------------------------------------------GTGACTGCATGAATGAAGAATGTGAAGGTTGTTGGTACGAATGCCGCAATTGTGGCTCTCTCAAATGCGGCCCTCAATGTAGAACAAATCGAAAGTTTTTTTATGAAGGCATTATATACGATGGAAAGGACTTATCTATAATTAATAAATACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000299706:27026-27257 -		CTCCAACGGATTGGACATCTGTAAGTGTTCCACT---------------ATAATTACAA---AA-------TA---TGATAAATATTGCTTTTCATTTCAGGCGACTGTATGAATGATGAATGTGATGGTTGCTGGTATGCATGCCGTTGTTGCGGTTCTACAAAATGCGGTCCTCAATGTCGCTCAAATAGGAAGTTTTTTTATGAAGGCATTATATATGATGGCAAGGATTTATCTATAACTAATAAATATGTTACCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453873:4569-4843 +		GACCAGCGGACTAGACATTTGTAAGTAGAATATATT-----------------GAA----ATCAA--CAAATAAAAAAATAA--------TTTTTTTGTAGGTGACTGCATGAACGATAAATGTGATGGTTGCTGGTATGAATGCCAAAATTGTGGTTCTACTAAATGCGGTCCTCAATGTCGCTCAAATCGAAAATTTTTTTATGAAGGGATAACATATGACGGAAAGGACTTATCTATACATAATAAGAATATTTCCAAAT--AAAAT----------------ATAAACTAATTGAACATTAG--------------------------------CA--------------------------------CTTAAATAAAATAAGA----------------------------------------
droEle1	scf7180000489352:1647-1875 +		GTTCAACGGACTGGACATTTGTAAGTGCCAGGCAGAGCT----------CAAAATTTAA--------A--ATA---TAACAA--------TTTTTTGTCAGGTGACTGTATGAATAAAGATTGTGATGGTTGTTGGTATGAATGCCGAAGTTGTGGCTCTACTAGGTGTGGTCCTCAATGTCGCTCAAATCGAAAGTTTTTCTATGAAGGAATTGCATACGATGGAAAAGACTTATCTATACATAATAGAAATATTCCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000776902:5882-6149 +		ATTCAACGGACTAGATATTTGTGAGTGCAAGACATT-----------------GTATAAATTCAA--A--ATG---AAAACA--------TTTTGTTTCAGGCGACTGTATAAATAAAGATTGTGATGGTTGCTGGTTTGAATGTCCAAGTTGTGGCTCTACTAGGTGTGGTCCTCAATGTCGCTCAAATCGAAAGTTTTTCTATGAAGGCATTACATACGATGGAAAAGATTTATCTATACAAAACAAATATATTTCCAAAT--AAAATCTTCATAGTTATAAATACAAAATAATTAAG--------------------------------------------------------------------------------------AA----------------------------------------
droBia1	scf7180000301704:15668-15888 -		-----------------------------------------------------------------------------------------------------GCGACTGCTTAAATAAAGAATGTGAAGGTTGCTGGTATGAGTGCCGTAGTTGTGGCTCTACCAGATGTGGTCCTCAATGCCGCTCAAATCGGAAGTTCTTCTACGAGGGCATTACATATGATGGAAAAGACTTATCTATACATAATAAATATATTCCAAAAT--AAAGT---------------------------A----------------------------GCGTATGT---AGCATTGGGCTTTAGAATG---------AAATGAACA----TGAATATG----------------------GTTA-----------TCTAT
droTak1	scf7180000412782:1440-1625 -		AT------------------------------------------------------------------------------------------GTTTTTCAGGCGACTGTTTGAATAAAGAATGCGATGGCTGCTGGTATGAATGCCGGAGTTGTGGCTCTACCAGATGTGGTCCTCAATGTCGCTCTAATCGAAAGTTCTTTTACGAGGGAATTTCATATGATGGAAAAGACTTATCTATACATAATAAATATATTCCAAAAT--AAGGT---------------------------TAAAAT-------------------G--------------------------------------------------------------------------------------------------------T
droEug1	scf7180000407465:25938-26164 +		CTTCAACGGGCTAAACATTTGTAGGTAAAACT-----------------ATAAGTTTAAATGAAA--A--ATA---AAAATG--------GTATGTTTCAGGCGACTGTATGAATCAAGAATGTGGTGGTTGCTGGTATGAATGTCGCAACTGTGGCTCCACTAGGTGTGGGCCTCAATGTCGCTCAAACCGAAAGTTCTTGTATGAGGGCGTTACATATGACGGAAAAGACTTATCTATATCTAATAAATATTATCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2R:716979-717211 +		CTCAAACGGTCTGGACATATGTAAGTACAAATCACTCCTTACGTGGTTG-------------TTATTA--ATA---AA--A-C-------ACGTAATTCAGGCGACTGTATGAATCAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAGGTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATAACATATGACGGTAAAGATTTAAATATTCAAAATAAATATATACCAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	2r:1777258-1777481 +		CTCAAACGGTATGGACATTTGTAAGTACAAATCACTTTTTACAAGGTTG-------------AAATTA--ATA---AA--A-C-------CCGTATATCAGGCGACTGTATGAATCAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAGGTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATTACATATGACGGTAAAGATTTAAATATTCAAAATAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_153:22155-22378 -		CTCAAACGGTATGGACATTTGTAAGTACAAATTACTTTTTACAAGGTTG-------------AAATTA--ATA---AA--A-C-------CCGTATTTCAGGCGACTGTATGAATCAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAGGTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATTACATATGACGGTAAAGATTTAAATATTCAAAATAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	chr2h:77121-77349 +		CTTCAACGGTCTGGACATTTGTAAGGGTAAATCAATCCTAAGATAGCCG-------------AATCTA--AGA---AA--A-A--------CATATTTCAGGCGACTGTATGAATCAAGAATGTGATGGTTGCTGGTATAAGTGCCGAGGTTGTGGCTCAACCAGGTGTGGTCCTCAATGTCGCTCAAATCGAAAGCTTTTTTATGAGGACATTACATATGACGGAAAAGATTTAAATATTCAAAATAAATATATTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4845:1452423-1452652 -		GCTCAACGGTCTGGACATTTGTAAGTGCAAATCAGTCCTTACATAGCTG-------------AAATTA--AGA---AA--A-A-------TCGTTTTTCAGGTGACTGTATGAATCAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAGGTGTGGTCCTCAATGTCGCTCAAATCGAAAATTTTTTTATGAGGACATAACATATGACGGAAAAGATTTAAGTATTCAAAATAAATATATGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

ATCCAATGGTCGTGATGTTT---------------------------------------------------------------------------------GTGATTGCATGAATGACGATTGCGATGGATGTTGGTCCGCTTGCCTGTCCTGCGGGTCTACAAAATGTGGTCCCCAGTGCAGGGTTAATCGAAAGTTTTTTTATGAGTGTATTGTGTACGATGGAAAAGATTTGTCTATTGTTAATAAGTACTTTCCTAGTTCT------------------------------------AA-------------------GAT-CAGTATGT---AATTTTATGTGAAGAAATA---------AATTAAG----------------------------AATCAATTGCTATTTATCGAAATATTAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................GGTCCCCAGTGCAGGGTTAAT..............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.....................................................................................................GTGATTGCATGAATGACGATTGC................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................GAGTGTATTGTGTACGATGGAA.........................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................GTATGT---AATTTTATGTGAAGA............................................................................	21	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................AAAGATTTGTCTATTGTTAATAAGTACT..............................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................CAAAATGTGGTCCCCAGTGCAGG....................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................TGTACGATGGAAAAGATTTGTCTAT............................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...........................................................................................................................................GCTTGCCTGTCCTGCGGGT..............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................TCTACAAAATGTGGTCCCCAGTGCA......................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
....AATGGTCGTGATGTTT---------------------------------------------------------------------------------GTG....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................GTACGATGGAAAAGATTTGTCTATT...........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................GTATTGTGTACGATGGAA.........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.............................................................................................................ATGAATGACGATTGCGATGGAT.........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................GTGTACGATGGAAAAGATTT..................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0

droVir3

GTCCAATGGATTAGACGTTT---------------------------------------------------------------------------------GTGATTGCATGAACGAAGAATGTGATGGATGTTGGTACGAGTGCCGCAGTTGTGGCTCAACCAGATGTGGTCCGCAATGTCGCGTCAATAGAAAGTTCTTTTATGAAAACATTGTGTATGATGGCAAAGACTTAACAATAACCAACAAGCATCTTCCTGGCAAA------------------------------------AT-------------------G-----------------------------------------------------------------------------------------------------TAAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................ACGAAGAATGTGATGGATGTT......................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CATCTTCCTGGCAAA------------------------------------AT-------------------G-----------------------------------------------------------------------------------------------------T...	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TATGAAAACATTGTGTATGATGG...........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................TTGTGGCTCAACCAGATGTGGT................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TGGCTCAACCAGATGTGGTCC..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GTGATGGATGTTGGTACGAGT.............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GATGGATGTTGGTACGAGTGC...........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GATGGATGTTGGTACGAGTG............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................ATGTTGGTACGAGTGCCGCAGTTGTGGCTCA............................................................................................................................................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................AACAATAACCAACAAGCATCTTCCTGGC......................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GATGGATGTTGGTACGAGT.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATCCAATGGCTTAGATGTCT---------------------------------------------------------------------------------GCGACTGTATGAACGAGCAATGTAGTGGCTGTTGGTACGAGTGCCGCAATTGTGGGTCAACCAGATGTGGTCCACAGTGTCGCGTCAATCGCAAGTTTTTCTATGAAAATATTGTGTATGACGGCAAAGATCTGACAATATCCAACAAATACTGTTCTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................CAGATGTGGTCCACAGTGTCG.....................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
...................T---------------------------------------------------------------------------------GCGACTGTATGAACGAGCAATGTAG..............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................................................................................................TGTATGAACGAGCAATGTAGT.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................ATGAACGAGCAATGTAGTG............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1

droGri2

ATACAGCGATTTGGACGTCT---------------------------------------------------------------------------------GCGATTGCATGAACGATGAGTGCAGTGGATGCTGGTACGAGTGTCGCATTTGTGGCTCTACCCGATGTGGTCCACAGTGTCGCGTTAATCGAAAGTTCTTCTATGAGACCATTGTGTATGATGGTAAGGATCTGACCATATCCAATAAACATCTGCCTGGGAAA------------------------------------AT-------------------GTA-ATGCATTT---AATTATGTGTAAGCGAATAGTGTTTTTAAAAGTGT----------------------------AAGCAATTGTCTTTTGTAATTGTAATAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............GGACGTCT---------------------------------------------------------------------------------GCGATTGCATGAA..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................GTTTTTAAAAGTGT----------------------------AAGCAATT....................	22	1	1.00	1	1	0
........ATTTGGACGTCT---------------------------------------------------------------------------------GCGATTG................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1
.....................................................................................................................................................................................................................................................................................................................................................ATGTGTAAGCGAATAGTGTTTTTA...............................................................	24	1	1.00	1	1	0

dp5

CTACAATGGATTAGACATTT---------------------------------------------------------------------------------GCGACTGCATGAGCGAAGAGTGTGATGGATGCTGGTACGAATGTCCAAGCTGTGGTTCTACCAGGTGCGGTCCTACCTGTAGAGCTAATCGAAAGTTTTTCTACGAAGGAATGAACCACGATGGAAAAGACTTATCCATAACCAATAAATTCCTTCCAAAAT--AAACT---------------------------GAAAATTAGTTTAAAAATTAAAAATGTATGCCTATGACGCGAA--------------------------------CC----TAGGTCAGGAATTAGTTTTAAGTACCAATAA--ATGTATTAATATTTTAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................TACCAGGTGCGGTCCTACCTGTAGAGC..................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..ACAATGGATTAGACATTT---------------------------------------------------------------------------------GCGACTG................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................TGTGGTTCTACCAGGTGCGG.................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................ATGAACCACGATGGAAAAGACTTATCC..............................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GTATGCCTATGACGCGAA--------------------------------CC----..................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GATTAGACATTT---------------------------------------------------------------------------------GCGACTGC...............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TACGAAGGAATGAACCACGATGGAAA........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................GTCCAAGCTGTGGTTCTACCAGG......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................ATGAGCGAAGAGTGTGATGGATGCTG.....................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................GCCTATGACGCGAA--------------------------------CC----TAGGTCAGG.........................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CGCGAA--------------------------------CC----TAGGTCAGGAATT.....................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................TT---------------------------------------------------------------------------------GCGACTGCATGAGCGAAGAGTGTGAT.............................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................GAATGTCCAAGCTGTGGTT..............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CTACCTGTAGAGCTAATCG............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GTGCGGTCCTACCTGTAGAGCTA................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................GAGTGTGATGGATGCTGGTACG................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................TGAGCGAAGAGTGTGATGGATGCTGG....................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ACGATGGAAAAGACTTATCCATAACC........................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TGCCTATGACGCGAA--------------------------------CC----TA................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................AAGCTGTGGTTCTACCAGGTGCGGTCC..............................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................ACTGCATGAGCGAAGAGTGT................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........ATTAGACATTT---------------------------------------------------------------------------------GCGACTG................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................T---------------------------------------------------------------------------------GCGACTGCATGAGCGAAGAGTGTGA..............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................GCGACTGCATGAGCGAAGAGT..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1

droPer2

CTACAATGGATTAGACATTT---------------------------------------------------------------------------------GCGACTGCATGAGCGAAGAGTGTGATGGATGCTGGTACGAATGTCCAAGCTGTGGTTCTACCAGGTGCGGTCCTACCTGTAGAGCTAATCGAAAGTTTTTCTACGAAGGAATGAACCACGATGGAAAAGACTTATCCATAACCAATAAATTCCTTCCAAAAT--AAACT---------------------------GAAAATTAGTTTAAAAATTAAAAATGTATGCCTATGACGCGAA--------------------------------CC----TAGGTCAGGAATTAGTTTTAAGTACCAATAA--ATGTATTAATATTTTAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........GATTAGACATTT---------------------------------------------------------------------------------GCGACTG................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	4	0	0	0	0	0
............................................................................................................................................................................CCTACCTGTAGAGCTAATCGAAAGT.......................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................GGTCCTACCTGTAGAGCTA................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................GGTGCGGTCCTACCTGTAGAGCT.................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................GGTGCGGTCCTACCTGTAGAGCC.................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................TACCTGTAGAGCTAATCGAAAGT.......................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................GTGTGATGGATGCTGGTACG................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................TGTGGTTCTACCAGGTGCGGT................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................GAGCTAATCGAAAGTTTTTCTACGA.............................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................AGTGTGATGGATGCTGGTACG................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droAna3

-----------------------------------------------------------------------------------------------------GTGACTGTATGAATGAAGAGTGTGAAGGTTGTTGGTACGAATGCCGCATTTGTGGATCTCTGAGGTGCGGCCCTCAATGTCGAACAAATCGAAAGTTTTTTTATGAAGGCATTATTTACGATGGAAAAGACTTATCTATAATTAATAAATACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................ATGAAGGCATTATTTACGATGG...........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................TCTCTGAGGTGCGGCCCTCAATG........................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................TACGATGGAAAAGACTTATCTAT............................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.............................................................................................................ATGAATGAAGAGTGTGAAGGTT.........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................TGCGGCCCTCAATGTCGAA...................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droBip1

-----------------------------------------------------------------------------------------------------GTGACTGCATGAATGAAGAATGTGAAGGTTGTTGGTACGAATGCCGCAATTGTGGCTCTCTCAAATGCGGCCCTCAATGTAGAACAAATCGAAAGTTTTTTTATGAAGGCATTATATACGATGGAAAGGACTTATCTATAATTAATAAATACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTCCAACGGATTGGACATCTGTAAGTGTTCCACT---------------ATAATTACAA---AA-------TA---TGATAAATATTGCTTTTCATTTCAGGCGACTGTATGAATGATGAATGTGATGGTTGCTGGTATGCATGCCGTTGTTGCGGTTCTACAAAATGCGGTCCTCAATGTCGCTCAAATAGGAAGTTTTTTTATGAAGGCATTATATATGATGGCAAGGATTTATCTATAACTAATAAATATGTTACCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GACCAGCGGACTAGACATTTGTAAGTAGAATATATT-----------------GAA----ATCAA--CAAATAAAAAAATAA--------TTTTTTTGTAGGTGACTGCATGAACGATAAATGTGATGGTTGCTGGTATGAATGCCAAAATTGTGGTTCTACTAAATGCGGTCCTCAATGTCGCTCAAATCGAAAATTTTTTTATGAAGGGATAACATATGACGGAAAGGACTTATCTATACATAATAAGAATATTTCCAAAT--AAAAT----------------ATAAACTAATTGAACATTAG--------------------------------CA--------------------------------CTTAAATAAAATAAGA----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTTCAACGGACTGGACATTTGTAAGTGCCAGGCAGAGCT----------CAAAATTTAA--------A--ATA---TAACAA--------TTTTTTGTCAGGTGACTGTATGAATAAAGATTGTGATGGTTGTTGGTATGAATGCCGAAGTTGTGGCTCTACTAGGTGTGGTCCTCAATGTCGCTCAAATCGAAAGTTTTTCTATGAAGGAATTGCATACGATGGAAAAGACTTATCTATACATAATAGAAATATTCCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTCAACGGACTAGATATTTGTGAGTGCAAGACATT-----------------GTATAAATTCAA--A--ATG---AAAACA--------TTTTGTTTCAGGCGACTGTATAAATAAAGATTGTGATGGTTGCTGGTTTGAATGTCCAAGTTGTGGCTCTACTAGGTGTGGTCCTCAATGTCGCTCAAATCGAAAGTTTTTCTATGAAGGCATTACATACGATGGAAAAGATTTATCTATACAAAACAAATATATTTCCAAAT--AAAATCTTCATAGTTATAAATACAAAATAATTAAG--------------------------------------------------------------------------------------AA----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-----------------------------------------------------------------------------------------------------GCGACTGCTTAAATAAAGAATGTGAAGGTTGCTGGTATGAGTGCCGTAGTTGTGGCTCTACCAGATGTGGTCCTCAATGCCGCTCAAATCGGAAGTTCTTCTACGAGGGCATTACATATGATGGAAAAGACTTATCTATACATAATAAATATATTCCAAAAT--AAAGT---------------------------A----------------------------GCGTATGT---AGCATTGGGCTTTAGAATG---------AAATGAACA----TGAATATG----------------------GTTA-----------TCTAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AT------------------------------------------------------------------------------------------GTTTTTCAGGCGACTGTTTGAATAAAGAATGCGATGGCTGCTGGTATGAATGCCGGAGTTGTGGCTCTACCAGATGTGGTCCTCAATGTCGCTCTAATCGAAAGTTCTTTTACGAGGGAATTTCATATGATGGAAAAGACTTATCTATACATAATAAATATATTCCAAAAT--AAGGT---------------------------TAAAAT-------------------G--------------------------------------------------------------------------------------------------------T	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CTTCAACGGGCTAAACATTTGTAGGTAAAACT-----------------ATAAGTTTAAATGAAA--A--ATA---AAAATG--------GTATGTTTCAGGCGACTGTATGAATCAAGAATGTGGTGGTTGCTGGTATGAATGTCGCAACTGTGGCTCCACTAGGTGTGGGCCTCAATGTCGCTCAAACCGAAAGTTCTTGTATGAGGGCGTTACATATGACGGAAAAGACTTATCTATATCTAATAAATATTATCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CTCAAACGGTCTGGACATATGTAAGTACAAATCACTCCTTACGTGGTTG-------------TTATTA--ATA---AA--A-C-------ACGTAATTCAGGCGACTGTATGAATCAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAGGTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATAACATATGACGGTAAAGATTTAAATATTCAAAATAAATATATACCAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................ATATGACGGTAAAGATTTAAATATTC..........................................................................................................................................................................................	26	1	32.00	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	4	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................CTGTATGAATCAAGAATG.................................................................................................................................................................................................................................................................................................................	18	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	5	7	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................ATGAGGACATAACATATGACGGTATT.......................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CCCAATGTCGCTCGAATCGAAAGTTTT....................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CAATGTCGCTCGAATCGAAAGT.......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................ACTGTATGAATCAAGAATGTGATGT...........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ATGACGGTAAAGATTTAAATATTCA.........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCGAAAGTTTTTTTATGAGGA..........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CTCAAACGGTATGGACATTTGTAAGTACAAATCACTTTTTACAAGGTTG-------------AAATTA--ATA---AA--A-C-------CCGTATATCAGGCGACTGTATGAATCAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAGGTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATTACATATGACGGTAAAGATTTAAATATTCAAAATAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................TGTATGAATCAAGAATGTGATGGT..........................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TACATATGACGGTAAAGATTTAAATAT............................................................................................................................................................................................	27	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................TTATGAGGACATTACATATGACGGTA.........................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
....AACGGTATGGACATTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................TGAATCAAGAATGTGATGGTTGCTGG....................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
............................................................................................................................................................................................................TGAGGACATTACATATGACGGTAAAGA.....................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
..............................................................................................................TGAATCAAGAATGTGATGGT..........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................CGACTGTATGAATCAAGAATGTGAT.............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TCCCCAATGTCGCTCGAATCGAAAGTTT.....................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........GTATGGACATTTGTAAGTA.................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TGTATGAATCAAGAATGTGATGGTTG........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................C-------CCGTATATCAGGCGACTG................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTTTATGAGGACATTACATATGACGGTA.........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GAATCGAAAGTTTTTTTATGAGGAC.........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................TATGAATCAAGAATGTGATGGT..........................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................TGCCGAAGTTGTGGCTCTACCAG.......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................GACTGTATGAATCAAGAATGTGATGGT..........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................TTGTGGCTCTACCAGGTGTGG.................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GTGGCTCTACCAGGTGT...................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................TCTACCAGGTGTGGTCCCCAATGTCGCT...................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAGGTGTGGTCCCCAATGTCGCTCGAAT..............................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TATGACGGTAAAGATTTAAATATTCAAAA......................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CGAAAGTTTTTTTATGAGGA..........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................TACCAGGTGTGGTCCCCAATGTCG.....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................TACATATGACGGTAAAGATTTAAATA.............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................A-C-------CCGTATATCAGGCGACTG................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTTTATGAGGACATTACATATGACGGT..........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TGACGGTAAAGATTTAAATATTCAAAA......................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................CAAGAATGTGATGGTTGCTGG....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................ATCGAAAGTTTTTTTATGAGGAC.........................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TGTATGAATCAAGAATGTGATGG...........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTACATATGACGGTAAAGATTTAAATA.............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTTATGAGGACATTACATATGACGGTA.........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

CTCAAACGGTATGGACATTTGTAAGTACAAATTACTTTTTACAAGGTTG-------------AAATTA--ATA---AA--A-C-------CCGTATTTCAGGCGACTGTATGAATCAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAGGTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATTACATATGACGGTAAAGATTTAAATATTCAAAATAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................ATCAAGAATGTGATGGTTGCTGG....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................GAGGACATTACATATGACGGT..........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..........................................................................................................................................................GGCTCTACCAGGTGTGGTC...............................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................................TATGACGGTAAAGATTTAAAT..............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.....................................................................................................................................................................GTGTGGTCCCCAATGTCGCT...................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................ATATGACGGTAAAGATTTAAAT..............................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.................................................................................................................ATCAAGAATGTGATGGTTGCTG.....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0

droYak3

CTTCAACGGTCTGGACATTTGTAAGGGTAAATCAATCCTAAGATAGCCG-------------AATCTA--AGA---AA--A-A--------CATATTTCAGGCGACTGTATGAATCAAGAATGTGATGGTTGCTGGTATAAGTGCCGAGGTTGTGGCTCAACCAGGTGTGGTCCTCAATGTCGCTCAAATCGAAAGCTTTTTTATGAGGACATTACATATGACGGAAAAGATTTAAATATTCAAAATAAATATATTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................ATTACATATGACGGAAAAGATT...................................................................................................................................................................................................	22	1	6.00	6	0	1	0	0	0	0	5	0	0	0	0
.........................................................................................................................................ATAAGTGCCGAGGTTGTGGCT..............................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................CATTACATATGACGGAAAAGATT...................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................................................ATGACGGAAAAGATTTAAAT..............................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................ATAAGTGCCGAGGTTGTGGCTC.............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................TGAATCAAGAATGTGATGGTTGCTGG....................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................GTGCCGAGGTTGTGGCTCAACC.........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................AATGTGATGGTTGCTGGTATAAGTGCC..........................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................ATCAAGAATGTGATGGTTGCTGGT...................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TTACATATGACGGAAAAGATT...................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................GGACATTACATATGACGGAA.........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................TATAAGTGCCGAGGTTGTGGCTCAACCA........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................CCTCAATGTCGCTCAAATCGAAAGCT......................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................ATATTTCAGGCGACTGTATGAA..........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................GAGGTTGTGGCTCAACCAGGTGTGG.................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................AGTGCCGAGGTTGTGGCTCAAC..........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................AACCAGGTGTGGTCCTCAATGTC......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................GAATGTGATGGTTGCTGGT...................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................CGAAAGCTTTTTTATGAGGACATT......................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................GTATAAGTGCCGAGGTTGTGGCTCAACC.........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................CAACCAGGTGTGGTCCTCAATGTCGCT...................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................GTGCCGAGGTTGTGGCTC.............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................CCTCAATGTCGCTCAAATCGAAAGCTT.....................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................TGTGGCTCAACCAGGTGTGGT................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................ATGTGATGGTTGCTGGTATAAGTGCCGAGGT.....................................................................................................................................................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................................................GACATTACATATGACGGAAAAGAT....................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................TACATATGACGGAAAAGATT...................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................GGCTCAACCAGGTGTGGTCCT.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GACATTACATATGACGGAAA........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ATTACATATGACGGAAAAGATTTAAAT..............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................TACATATGACGGAAAAGAT....................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................TTTTTTATGAGGACATTACATATGACGGAA.........................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................AAGAATGTGATGGTTGCTGGT...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ACATTACATATGACGGAAA........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................GTGATGGTTGCTGGTATAAGTGCCGA........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GCTCAACGGTCTGGACATTTGTAAGTGCAAATCAGTCCTTACATAGCTG-------------AAATTA--AGA---AA--A-A-------TCGTTTTTCAGGTGACTGTATGAATCAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAGGTGTGGTCCTCAATGTCGCTCAAATCGAAAATTTTTTTATGAGGACATAACATATGACGGAAAAGATTTAAGTATTCAAAATAAATATATGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................TAATTGCCGAAGTTGTGGCTCTACCAGGA.....................................................................................................................................................................................................................................................................	29	1	13.00	13	0	0	0	0	0	0	13
............................................................................................................TATGAATCAAGAATGTGATGGTTGC.......................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................TGCTGGTATAATTGCCGAAGTTGTGGCTC.............................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................CAGGTGTGGTCCTCAATGTCGCTCA.................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................ATATGACGGAAAAGATTTAAGT..............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................CGAAGTTGTGGCTCTACCAGGTGTGGT................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................TAACATATGACGGAAAAGATTTAAG...............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................GTTGTGGCTCTACCAGGTGT...................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................ATAACATATGACGGAAAAGA.....................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................AATGTGATGGTTGCTGGT...................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................ATTGCCGAAGTTGTGGCTCTACCA........................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................AGTTGTGGCTCTACCAGGTGT...................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................CATAACATATGACGGAAAAGA.....................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................TGGTTGCTGGTATAATTGCCG.........................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................CCGAAGTTGTGGCTCTACC.........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................ACTGTATGAATCAAGAATGT................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................TTTTTATGAGGACATAAC....................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................CCTCAATGTCGCTCAAATCG............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................ATGAATCAAGAATGTGATGGTTGCTGGT...................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................GTCGCTCAAATCGAAAATTTTTTTATGA.............................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................GAAGTTGTGGCTCTACCAGGTGTGGC................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0

dwi_344

scf2_1100000004382:1076044-1076194 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-11.1	-11.1	-11.1