ID:

dwi_3364

 Coordinate:

scf2_1100000004943:8424301-8424451 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-13.5 -13.5 -13.3 -13.2

Flybase annnotation

CDS [Dwil\GK14052-cds]; exon [dwil_GLEANR_14372:1]; intron [Dwil\GK14052-in]

No Repeatable elements found

Sense Strand Reads

----##############################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATAAATGACCGTCGGCGTCCTGATGATGCGTCGCAACGACTTGAGCGCCTGTATGTTAGCAGCAGCTCGATCGTTCACAATTGCTACAATGTTTTGTATTTTTGGATAAATACAAAAATAACTAATTTCATACATATTTGCGCTTTTTGGGCATACCACATCGACTGGCAGCATAGAGAAGCGACAACTTGCCAGAGTGAACGCTTATGAGGAGGACGACGAAAATTTGCAAAATATATGTATATGAAATG
*****************************************************((.........((((((..((.((.(((.........(((...((((((((........))))))))...))).........))))).))...)))))).))************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 M020
head
 V119
head
.................TCCTGATGATGCGTCGCAACGACT.................................................................................................................................................................................................................. 24 0 1 13.00 13 7 4 0 2 0
.................................................TGTATGTTAGCAGCAGCTCGATCGT................................................................................................................................................................................. 25 0 1 8.00 8 8 0 0 0 0
.............................................................................................................................................................................................TGCCAGAGTGAACGCTTATGAGGAGGA................................... 27 0 1 8.00 8 6 0 2 0 0
..........................TGCGTCGCAACGACTTGAGCGCCTG........................................................................................................................................................................................................ 25 0 1 7.00 7 7 0 0 0 0
....................TGATGATGCGTCGCAACGACTTGAG.............................................................................................................................................................................................................. 25 0 1 7.00 7 3 1 3 0 0
.............................................................................................................................................................................................TGCCAGAGTGAACGCTTATGAGGAGG.................................... 26 0 1 7.00 7 5 2 0 0 0
.................................................TGTATGTTAGCAGCAGCTCGATCG.................................................................................................................................................................................. 24 0 1 6.00 6 0 6 0 0 0
.................TCCTGATGATGCGTCGCAACGACTTG................................................................................................................................................................................................................ 26 0 1 5.00 5 2 3 0 0 0
.................................................................................................................................ATACATATTTGCGCTTTTTGGGCATA................................................................................................ 26 0 1 4.00 4 1 3 0 0 0
.....................................................TGTTAGCAGCAGCTCGATCGTTCACAA........................................................................................................................................................................... 27 0 1 4.00 4 4 0 0 0 0
.................................................TGTATGTTAGCAGCAGCTCGATCGTT................................................................................................................................................................................ 26 0 1 4.00 4 2 2 0 0 0
....................TGATGATGCGTCGCAACGACTTGAGC............................................................................................................................................................................................................. 26 0 1 4.00 4 1 2 0 0 1
....................................CGACTTGAGCGCCTGTATGTTAGCAG............................................................................................................................................................................................. 26 0 1 3.00 3 3 0 0 0 0
.................................................................................................................................ATACATATTTGCGCTTTTTGGGC................................................................................................... 23 0 1 3.00 3 3 0 0 0 0
.................................................................................................................................ATACATATTTGCGCTTTTTGGGCA.................................................................................................. 24 0 1 3.00 3 3 0 0 0 0
.......................TGATGCGTCGCAACGACTTGAGCGCC.......................................................................................................................................................................................................... 26 0 1 3.00 3 2 0 0 1 0
.................................................................................................................................ATACATATTTGCGCTTTTTGGG.................................................................................................... 22 0 1 3.00 3 1 2 0 0 0
.....................................................................................................................................................................................................TGAACGCTTATGAGGAGGACGACG.............................. 24 0 1 3.00 3 2 1 0 0 0
.........................................................................................................................................................TACCACATCGACTGGCAGCATAGA.......................................................................... 24 0 6 2.17 13 11 2 0 0 0
................................................................................................................................................................TCGACTGGCAGCATAGAGAAGCGACA................................................................. 26 0 1 2.00 2 2 0 0 0 0
.........................................TGAGCGCCTGTATGTTAGCAGCA........................................................................................................................................................................................... 23 0 1 2.00 2 0 1 1 0 0
.............................................................................................................................................................................................TGCCAGAGTGAACGCTTATGAGGAG..................................... 25 0 1 2.00 2 1 1 0 0 0
.....................................................................................................................................................................TGGCAGCATAGAGAAGCGACAACTTG............................................................ 26 0 1 2.00 2 2 0 0 0 0
................................................................................................................................................TTTTGGGCATACCACATCGACTGGC.................................................................................. 25 0 1 2.00 2 0 2 0 0 0
..............................................................................................................................................................................................GCCAGAGTGAACGCTTATGAGGAGG.................................... 25 0 1 2.00 2 1 1 0 0 0
................................................................................................................................................................TCGACTGGCAGCATAGAGAAGCGACAA................................................................ 27 0 1 2.00 2 2 0 0 0 0
.........................................................................................................................................................................................AACTTGCCAGAGTGAACGCTTATGAGG....................................... 27 0 1 2.00 2 1 1 0 0 0
.................................CAACGACTTGAGCGCCTGTATGTTAG................................................................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0
.........................................................................................................................................................TACCACATCGACTGGCAGCATAGAGAA....................................................................... 27 0 1 2.00 2 2 0 0 0 0
..............................................................................................................................................................................................GCCAGAGTGAACGCTTATGAGGAGGA................................... 26 0 1 2.00 2 2 0 0 0 0
..........................................................................TCACAATTGCTACAATGTTTTGTAT........................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0
...................................................................................................................................................TGGGCATACCACATCGACTGGCAGCA.............................................................................. 26 0 6 1.83 11 11 0 0 0 0
......................................................................................................................TAACTAATTTCATACATATTTGCGCT........................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
....................TGATGATGCGTCGCAACGACTTGAGCG............................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0
.....TGACCGTCGGCGTCCTGATGATGCGTA........................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0
...................................................TATGTTAGCAGCAGCTCGATCGTT................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................TAGAGAAGCGACAACTTGCCAGA....................................................... 23 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................CTAATTTCATACATATTTGCGCT........................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................TTGCGCTTTTAGGGCATACCACATCGA....................................................................................... 27 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................TTTGGGCATACCACATCGACTGGCAGAAT............................................................................. 29 1 1 1.00 1 1 0 0 0 0
.........................ATGCGTCGCAACGACTTGAGCGC........................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................CAGAGTGAACGCTTATGAGGAGG.................................... 23 0 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................TGCCAGAGTGAACGCTTATGAGG....................................... 23 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................TACCACATCGACTGGCAGCATAGAGAAG...................................................................... 28 0 1 1.00 1 1 0 0 0 0
...................................................TATGTTAGCAGCAGCTCGATCGTTCATA............................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................TGACAGCATAGAGAAGCGACAACTTG............................................................ 26 1 1 1.00 1 0 1 0 0 0
.......................TGATGCGTCGCAACGACTTGAGCGC........................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................................................CGACTGGCAGCATAGAGAAGCGACAACT.............................................................. 28 0 1 1.00 1 1 0 0 0 0
......................................................................................................TGGATAAATACAAAAATAACTAATTTCA......................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.................TCCTGATGATGCGTCGCAACGACTTGT............................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 1 0
......................................................................................................................................................................TGCAGCATAGAGAAGCGACAACTTG............................................................ 25 1 1 1.00 1 1 0 0 0 0
.TAAATGACCGTCGGCGTCCAA..................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................CAGAGTGAACGCTTATGAGGAGGAC.................................. 25 0 1 1.00 1 1 0 0 0 0
.......................TGATGCGTCGCAACGACTTGAGCGCCT......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.....................................................TGTTAGCAGCAGCTCGATCGTTCACAAT.......................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................ATACATATTTGCGCTTTTTGG..................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
.TAAATGACCGTCGGCGTCCTGATGA................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................TATTTGCGCTTTTTGGGCATACCACA........................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................ATACATATTTGCGCTTTTTGGGCATT................................................................................................ 26 1 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................GACAACTTGCCAGAGTGAACGCTTA............................................ 25 0 1 1.00 1 0 0 1 0 0
.................................................................................................................................................................................................AGAGTGAACGCTTATGAGGAGGACGA................................ 26 0 1 1.00 1 1 0 0 0 0
......................................................GTTAGCAGCAGCTCGATCGTTAG.............................................................................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0
..........................................................................................................................................TGCGCTTTTTGGGCATACCACATCGAC...................................................................................... 27 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................GGCAGCATAGAGAAGCGACAACT.............................................................. 23 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................ATACATATTTGAGCTTTTTGGGC................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
............................................................................................................................................................CACATCGACTGGCAGCATAGAGAAGCG.................................................................... 27 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................ATACATATTTGCGCTTTTTGGGCAT................................................................................................. 25 0 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................................CAGAGTGAACGGTTATGAGGAGGA................................... 24 1 1 1.00 1 1 0 0 0 0
.TAAATGACCGTCGGCGTCCTGATGATG............................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0
..............................................................................................................................................................................................................ATGAGGAGGACGACGAAAATTTGCA.................... 25 0 1 1.00 1 1 0 0 0 0
.......................TGATGCGTCGCAACGACTTGAGCGCCTG........................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................TAGAGAAGCGACAACTTGCCAGAGTGA................................................... 27 0 1 1.00 1 1 0 0 0 0
.................................................TGTATGTTAGCAGCACCTCGATCG.................................................................................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0
................GTCCTGATGATGCGTCGCAACGACT.................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0
....................TGATGATGCGTCGCAACGACTTGAGCGC........................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................TACCACATCGACTGGCAGCATAGAG......................................................................... 25 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................GAGTGAACGCTTATGAGGAGGACGACA.............................. 27 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................AGAGTGAACGCTTATGAGGAGG.................................... 22 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................................TTTGGGCATACCACATCGACTGGCA................................................................................. 25 0 1 1.00 1 1 0 0 0 0
....................TGATGATGCGTCGCACCGACTTGAGTA............................................................................................................................................................................................................ 27 3 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................................CGCTTATGAGGAGGACGACGAAAATT........................ 26 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................GCCAGAGTGAACGCTTATGAGGAGGT................................... 26 1 1 1.00 1 1 0 0 0 0
........................................................TAGCAGCAGCTCGATCGTTCACAATTGC....................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
..........................TGCGTCGCAACGACTTGAGCGCCTGTA...................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................TGCGCTTTTTGGGCATACCACATCGACT..................................................................................... 28 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................TCGACTGGCAGCATAGAGAAGCGA................................................................... 24 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................CATCGACTGGCAGCATAGAGAAG...................................................................... 23 0 1 1.00 1 1 0 0 0 0
..........................................................................TCACAATTGCTACAATGTTTTGTATTA...................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0
....................TGATGATGCGTCGCAACGACTTG................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0
...............................CGCAACGACTTGAGCGCCTGTATGT................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.......................................................................CGTTCACAATTGCTACAATGTTTTG........................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
...................................................TATGTTAGCAGCAGCTCGATCGTTCTT............................................................................................................................................................................. 27 2 1 1.00 1 1 0 0 0 0
...........................GCGTCGCAACGACTTGAGCGCCTG........................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
....................TGATGATGCGTCGCAACGACTTGAGT............................................................................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................CATCGACTGGCAGCATAGAGAAGCG.................................................................... 25 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................ATACATATTTGCGCTTTTTGGGGATA................................................................................................ 26 1 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................................TGAACGCTTATGAGGAGGACGACGA............................. 25 0 1 1.00 1 1 0 0 0 0
.........................................................AGCAGCAGCTCGATCGTTCACAAT.......................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..............................TCGCAACGACTTGAGCGCCTGTATG.................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.........................................TGAGCGCCTGTATGTTAGCAGCAGC......................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................TCGACTGGCAGCATAGAGAAGCGAC.................................................................. 25 0 1 1.00 1 1 0 0 0 0
......................................................................................................................TAACTAATTTCATACATATTTGCGCTTTT........................................................................................................ 29 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................GCCAGAGTGAACGCTTATGAGGAG..................................... 24 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................TGGGCATACCACATCGACTGGCAGC............................................................................... 25 0 6 0.67 4 2 2 0 0 0
..................................................................................................................................................TTGGGCATACCACATCGACTGGCAG................................................................................ 25 0 6 0.33 2 2 0 0 0 0
.........................................................................................................................................................TACCACATCGACTGGCAGC............................................................................... 19 0 6 0.33 2 2 0 0 0 0
...................................................................................................................................................TGGGCATACCACATCGACTGG................................................................................... 21 0 6 0.33 2 1 1 0 0 0
..............GCGTCCTGAAGACGGGTCG.......................................................................................................................................................................................................................... 19 3 5 0.20 1 0 0 1 0 0
....................................................................................................................................................GGGCATACCACATCGACTGGCAGC............................................................................... 24 0 6 0.17 1 1 0 0 0 0
....................................................................................................................................................GGGCATACCACATCGACTGGCAG................................................................................ 23 0 6 0.17 1 1 0 0 0 0
...................................................................................................................................................TGGGCATACCACATCGACTGGCAGCAA............................................................................. 27 1 6 0.17 1 1 0 0 0 0
.........................................................................................................................................................TACCACATCGACTGGCATCATAGA.......................................................................... 24 1 6 0.17 1 1 0 0 0 0
.........................................................................................................................................................TACCACATCGACTGGCAGCA.............................................................................. 20 0 6 0.17 1 1 0 0 0 0
...................................................................................................................................................TGGGCATACCACATCGACTGGCA................................................................................. 23 0 6 0.17 1 1 0 0 0 0
..................................................................................................................................................TTGGGCATACCACATCGACTGG................................................................................... 22 0 6 0.17 1 0 1 0 0 0
...................................................................................................................................................TGGGCATACCACATCGACTG.................................................................................... 20 0 6 0.17 1 1 0 0 0 0
........................................................................................................................................................ATACCACATCGACTGGCAA................................................................................ 19 1 6 0.17 1 1 0 0 0 0
..................................................................................................................................................TTGGGCATACCACATCGACTGGCAGC............................................................................... 26 0 6 0.17 1 1 0 0 0 0
...................................................................................................................................................TGGGCATACCACATCGACTGGCAG................................................................................ 24 0 6 0.17 1 1 0 0 0 0
............................................................................................................................................................CACATCGACTGGCAGCATAGA.......................................................................... 21 0 7 0.14 1 1 0 0 0 0
....................................................................................................................................................................CAGGCAGCATAGCGAAGC..................................................................... 18 2 11 0.09 1 1 0 0 0 0
..........................................................................................................................................................................................................GATTTTGAGGAGGACGAC............................... 18 2 14 0.07 1 0 0 1 0 0
....................................................................................................................................................................................................GTGTACGCTGACGAGGAGG.................................... 19 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TATTTACTGGCAGCCGCAGGACTACTACGCAGCGTTGCTGAACTCGCGGACATACAATCGTCGTCGAGCTAGCAAGTGTTAACGATGTTACAAAACATAAAAACCTATTTATGTTTTTATTGATTAAAGTATGTATAAACGCGAAAAACCCGTATGGTGTAGCTGACCGTCGTATCTCTTCGCTGTTGAACGGTCTCACTTGCGAATACTCCTCCTGCTGCTTTTAAACGTTTTATATACATATACTTTAC
************************************************************************************************((.........((((((..((.((.(((.........(((...((((((((........))))))))...))).........))))).))...)))))).))***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V118
embryo
.................................GTTGCTGAACTCGCGGACATACAATC................................................................................................................................................................................................ 26 0 1 2.00 2 2 0 0
..........................................................CGTCGTCGAGCTAGCAAGTGTTAACG....................................................................................................................................................................... 26 0 1 2.00 2 2 0 0
.......................................................................................................................................................................................TGTTGAACGGTCTCACTTGCGAA............................................. 23 0 1 2.00 2 2 0 0
.......TGGCAGCCGCAGGACTACTACGC............................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0
....................................GCTGAACTCGCGGACATACAATC................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................................TCCTGCTGCTTTTAAACGTTTT................. 22 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................................TCCTGCTGCTTTTAAACGTTT.................. 21 0 1 1.00 1 0 1 0
............................................................TCGTCGAGCTAGCAAGTGTTAACG....................................................................................................................................................................... 24 0 1 1.00 1 1 0 0
..............................................................................................................................................GAAAAACCCGTATGGTGTAGCTGACCGT................................................................................. 28 0 1 1.00 1 1 0 0
...................................TGCTGAACTCGCGGACATACAATC................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0
....................................................................................................................................................................................CGCTGTTGAACGGTCTCACTTG................................................. 22 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................TGAACGGTCTCACTTGCGAATACT......................................... 24 0 1 1.00 1 1 0 0
...........................................................GTCGTCGAGCTAGCAAGTGTTAACG....................................................................................................................................................................... 25 0 1 1.00 1 1 0 0
...............................................................................................................................................AAAAACCCGTATGGTGTAGCTGACCGT................................................................................. 27 0 1 1.00 1 1 0 0
.................................................................................................................................................................................CTTCGCTGTTGAACGGTCTCACT................................................... 23 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................GGTCTCACTTGCGAATACTCCTCC.................................... 24 0 1 1.00 1 1 0 0
...................................................................GCTAGCAAGTGTTAACGATGTTAC................................................................................................................................................................ 24 0 1 1.00 1 1 0 0
.........................................................TCGTCGTCGAGCTAGCAAGTGTTAACG....................................................................................................................................................................... 27 0 1 1.00 1 1 0 0
...............................................................................................................................................................................CTCTTCGCTGTTGAACGGTCTCACT................................................... 25 0 1 1.00 1 1 0 0
.....................................................................................................................................................................................................................CCTGCTGCTTTTAAACGTTTTAT............... 23 0 1 1.00 1 1 0 0
............................................................TCGTCGAGCTAGCAAGTGTTAAC........................................................................................................................................................................ 23 0 1 1.00 1 1 0 0
.....................................................................TAGCAAGTGTTAACGATGTTAC................................................................................................................................................................ 22 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................TGCGAATACTCCTCCTGCTGCTTTT.......................... 25 0 1 1.00 1 1 0 0
..................GGACTACTACGCAGCGTTGCTGA.................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0
..........................................................CGTCGTCGAGCTAGCAAGTGTTAAC........................................................................................................................................................................ 25 0 1 1.00 1 0 1 0
...........................................................GTCGTCGAGCTAGCAAGTGTTAAC........................................................................................................................................................................ 24 0 1 1.00 1 1 0 0
.........................................................TCGTCGTCGAGCTAGCAAGTGTT........................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
.......................................................................................................................................................................................TGTTGAACGGTCTCACTTGCGAAT............................................ 24 0 1 1.00 1 1 0 0
.............................................................CGTCGAGCTAGCAAGTGTTAACGA...................................................................................................................................................................... 24 0 1 1.00 1 1 0 0
.....ACTGGCAGCCGCAGGACTACTACGC............................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0
................................................................................................................................................................................TCTTCGCTGTTGAACGGTCTCAC.................................................... 23 0 1 1.00 1 1 0 0
...................................................................................................................................................ACCCGTATGGTGTAGCTGACCGT................................................................................. 23 0 6 0.33 2 2 0 0
....................................................................................................................................................CCCGTATGGTGTAGCTGACCGT................................................................................. 22 0 6 0.17 1 1 0 0
...........................................................................................................................................................GGTGTAGCTGACCGTCGTATCT.......................................................................... 22 0 6 0.17 1 0 0 1
..................................................................................................................................................AACCCGTATGGTGTAGCTGACCGT................................................................................. 24 0 6 0.17 1 1 0 0
...................................................................................................................................................ACCCGTATGGTGTAGCTGACCGTG................................................................................ 24 1 6 0.17 1 1 0 0
............................................................TCGTCGACTTAGCAAGTGAT........................................................................................................................................................................... 20 3 7 0.14 1 1 0 0
.......TGGCATCCGCAGGAATCCT................................................................................................................................................................................................................................. 19 3 9 0.11 1 1 0 0
.......................................................................GTAAGGGCTAACGATGTTAC................................................................................................................................................................ 20 3 18 0.06 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004943:8424251-8424501 + dwi_3364 ATAAATGACCGTCGGCGTCCTGATGATGCGTCGCAACGACTTGAGCGCCTGTATGTTAGCAGCAGCTCGATCGTTCACAATTGCTACAATGTTTTGTATTTTTGGATAAATACAAAAATAACTAATTTCATACATATTTGCGCTTTTTGGGCATACCACATCGACTGGCAGCATAGAGAAGCGACAACTTGCCAGAGTGAACGCTTATGAGGAGGACGACGAAAATTTGCAAAATATATGTATATGAAATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ATAAATGACCGTCGGCGTCCTGATGATGCGTCGCAACGACTTGAGCGCCTGTATGTTAGCAGCAGCTCGATCGTTCACAATTGCTACAATGTTTTGTATTTTTGGATAAATACAAAAATAACTAATTTCATACATATTTGCGCTTTTTGGGCATACCACATCGACTGGCAGCATAGAGAAGCGACAACTTGCCAGAGTGAACGCTTATGAGGAGGACGACGAAAATTTGCAAAATATATGTATATGAAATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................TCCTGATGATGCGTCGCAACGACT..................................................................................................................................................................................................................24113.001327040
.................................................TGTATGTTAGCAGCAGCTCGATCGT.................................................................................................................................................................................2518.00808000
.............................................................................................................................................................................................TGCCAGAGTGAACGCTTATGAGGAGGA...................................2718.00806200
..........................TGCGTCGCAACGACTTGAGCGCCTG........................................................................................................................................................................................................2517.00707000
....................TGATGATGCGTCGCAACGACTTGAG..............................................................................................................................................................................................................2517.00703310
.............................................................................................................................................................................................TGCCAGAGTGAACGCTTATGAGGAGG....................................2617.00705020
.................................................TGTATGTTAGCAGCAGCTCGATCG..................................................................................................................................................................................2416.00600060
.................TCCTGATGATGCGTCGCAACGACTTG................................................................................................................................................................................................................2615.00502030
.................................................................................................................................ATACATATTTGCGCTTTTTGGGCATA................................................................................................2614.00401030
.....................................................TGTTAGCAGCAGCTCGATCGTTCACAA...........................................................................................................................................................................2714.00404000
.................................................TGTATGTTAGCAGCAGCTCGATCGTT................................................................................................................................................................................2614.00402020
....................TGATGATGCGTCGCAACGACTTGAGC.............................................................................................................................................................................................................2614.00401021
....................................CGACTTGAGCGCCTGTATGTTAGCAG.............................................................................................................................................................................................2613.00303000
.................................................................................................................................ATACATATTTGCGCTTTTTGGGC...................................................................................................2313.00303000
.................................................................................................................................ATACATATTTGCGCTTTTTGGGCA..................................................................................................2413.00303000
.......................TGATGCGTCGCAACGACTTGAGCGCC..........................................................................................................................................................................................................2613.00312000
.................................................................................................................................ATACATATTTGCGCTTTTTGGG....................................................................................................2213.00301020
.....................................................................................................................................................................................................TGAACGCTTATGAGGAGGACGACG..............................2413.00302010
.........................................................................................................................................................TACCACATCGACTGGCAGCATAGA..........................................................................2462.1713011020
................................................................................................................................................................TCGACTGGCAGCATAGAGAAGCGACA.................................................................2612.00202000
.........................................TGAGCGCCTGTATGTTAGCAGCA...........................................................................................................................................................................................2312.00200110
.............................................................................................................................................................................................TGCCAGAGTGAACGCTTATGAGGAG.....................................2512.00201010
.....................................................................................................................................................................TGGCAGCATAGAGAAGCGACAACTTG............................................................2612.00202000
................................................................................................................................................TTTTGGGCATACCACATCGACTGGC..................................................................................2512.00200020
..............................................................................................................................................................................................GCCAGAGTGAACGCTTATGAGGAGG....................................2512.00201010
................................................................................................................................................................TCGACTGGCAGCATAGAGAAGCGACAA................................................................2712.00202000
.........................................................................................................................................................................................AACTTGCCAGAGTGAACGCTTATGAGG.......................................2712.00201010
.................................CAACGACTTGAGCGCCTGTATGTTAG................................................................................................................................................................................................2612.00202000
.........................................................................................................................................................TACCACATCGACTGGCAGCATAGAGAA.......................................................................2712.00202000
..............................................................................................................................................................................................GCCAGAGTGAACGCTTATGAGGAGGA...................................2612.00202000
..........................................................................TCACAATTGCTACAATGTTTTGTAT........................................................................................................................................................2512.00202000
...................................................................................................................................................TGGGCATACCACATCGACTGGCAGCA..............................................................................2661.8311011000
......................................................................................................................TAACTAATTTCATACATATTTGCGCT...........................................................................................................2611.00101000
....................TGATGATGCGTCGCAACGACTTGAGCG............................................................................................................................................................................................................2711.00100100
.....TGACCGTCGGCGTCCTGATGATGCGTA...........................................................................................................................................................................................................................2711.00101000
...................................................TATGTTAGCAGCAGCTCGATCGTT................................................................................................................................................................................2411.00101000
.............................................................................................................................................................................TAGAGAAGCGACAACTTGCCAGA.......................................................2311.00101000
.........................................................................................................................CTAATTTCATACATATTTGCGCT...........................................................................................................2311.00101000
.........................ATGCGTCGCAACGACTTGAGCGC...........................................................................................................................................................................................................2311.00101000
................................................................................................................................................................................................CAGAGTGAACGCTTATGAGGAGG....................................2311.00100010
.............................................................................................................................................................................................TGCCAGAGTGAACGCTTATGAGG.......................................2311.00100010
.........................................................................................................................................................TACCACATCGACTGGCAGCATAGAGAAG......................................................................2811.00101000
.......................TGATGCGTCGCAACGACTTGAGCGC...........................................................................................................................................................................................................2511.00100010
.................................................................................................................................................................CGACTGGCAGCATAGAGAAGCGACAACT..............................................................2811.00101000
......................................................................................................TGGATAAATACAAAAATAACTAATTTCA.........................................................................................................................2811.00101000
.................TCCTGATGATGCGTCGCAACGACTTGT...............................................................................................................................................................................................................2711.00110000
.TAAATGACCGTCGGCGTCCAA.....................................................................................................................................................................................................................................2111.00101000
................................................................................................................................................................................................CAGAGTGAACGCTTATGAGGAGGAC..................................2511.00101000
.......................TGATGCGTCGCAACGACTTGAGCGCCT.........................................................................................................................................................................................................2711.00101000
.....................................................TGTTAGCAGCAGCTCGATCGTTCACAAT..........................................................................................................................................................................2811.00101000
.................................................................................................................................ATACATATTTGCGCTTTTTGG.....................................................................................................2111.00100010
.TAAATGACCGTCGGCGTCCTGATGA.................................................................................................................................................................................................................................2511.00101000
......................................................................................................................................TATTTGCGCTTTTTGGGCATACCACA...........................................................................................2611.00101000
.................................................................................................................................ATACATATTTGCGCTTTTTGGGCATT................................................................................................2611.00101000
......................................................................................................................................................................................GACAACTTGCCAGAGTGAACGCTTA............................................2511.00100100
.................................................................................................................................................................................................AGAGTGAACGCTTATGAGGAGGACGA................................2611.00101000
......................................................GTTAGCAGCAGCTCGATCGTTAG..............................................................................................................................................................................2311.00101000
..........................................................................................................................................TGCGCTTTTTGGGCATACCACATCGAC......................................................................................2711.00101000
......................................................................................................................................................................GGCAGCATAGAGAAGCGACAACT..............................................................2311.00101000
............................................................................................................................................................CACATCGACTGGCAGCATAGAGAAGCG....................................................................2711.00101000
.................................................................................................................................ATACATATTTGCGCTTTTTGGGCAT.................................................................................................2511.00100010
.TAAATGACCGTCGGCGTCCTGATGATG...............................................................................................................................................................................................................................2711.00100100
..............................................................................................................................................................................................................ATGAGGAGGACGACGAAAATTTGCA....................2511.00101000
.......................TGATGCGTCGCAACGACTTGAGCGCCTG........................................................................................................................................................................................................2811.00101000
.............................................................................................................................................................................TAGAGAAGCGACAACTTGCCAGAGTGA...................................................2711.00101000
................GTCCTGATGATGCGTCGCAACGACT..................................................................................................................................................................................................................2511.00100010
....................TGATGATGCGTCGCAACGACTTGAGCGC...........................................................................................................................................................................................................2811.00101000
.........................................................................................................................................................TACCACATCGACTGGCAGCATAGAG.........................................................................2511.00101000
..................................................................................................................................................................................................GAGTGAACGCTTATGAGGAGGACGACA..............................2711.00101000
.................................................................................................................................................................................................AGAGTGAACGCTTATGAGGAGG....................................2211.00100010
.................................................................................................................................................TTTGGGCATACCACATCGACTGGCA.................................................................................2511.00101000
.........................................................................................................................................................................................................CGCTTATGAGGAGGACGACGAAAATT........................2611.00101000
..............................................................................................................................................................................................GCCAGAGTGAACGCTTATGAGGAGGT...................................2611.00101000
........................................................TAGCAGCAGCTCGATCGTTCACAATTGC.......................................................................................................................................................................2811.00101000
..........................TGCGTCGCAACGACTTGAGCGCCTGTA......................................................................................................................................................................................................2711.00101000
..........................................................................................................................................TGCGCTTTTTGGGCATACCACATCGACT.....................................................................................2811.00101000
................................................................................................................................................................TCGACTGGCAGCATAGAGAAGCGA...................................................................2411.00101000
..............................................................................................................................................................CATCGACTGGCAGCATAGAGAAG......................................................................2311.00101000
..........................................................................TCACAATTGCTACAATGTTTTGTATTA......................................................................................................................................................2711.00101000
....................TGATGATGCGTCGCAACGACTTG................................................................................................................................................................................................................2311.00100010
...............................CGCAACGACTTGAGCGCCTGTATGT...................................................................................................................................................................................................2511.00101000
.......................................................................CGTTCACAATTGCTACAATGTTTTG...........................................................................................................................................................2511.00101000
...................................................TATGTTAGCAGCAGCTCGATCGTTCTT.............................................................................................................................................................................2711.00101000
...........................GCGTCGCAACGACTTGAGCGCCTG........................................................................................................................................................................................................2411.00101000
....................TGATGATGCGTCGCAACGACTTGAGT.............................................................................................................................................................................................................2611.00100010
..............................................................................................................................................................CATCGACTGGCAGCATAGAGAAGCG....................................................................2511.00101000
.....................................................................................................................................................................................................TGAACGCTTATGAGGAGGACGACGA.............................2511.00101000
.........................................................AGCAGCAGCTCGATCGTTCACAAT..........................................................................................................................................................................2411.00101000
..............................TCGCAACGACTTGAGCGCCTGTATG....................................................................................................................................................................................................2511.00101000
.........................................TGAGCGCCTGTATGTTAGCAGCAGC.........................................................................................................................................................................................2511.00101000
................................................................................................................................................................TCGACTGGCAGCATAGAGAAGCGAC..................................................................2511.00101000
......................................................................................................................TAACTAATTTCATACATATTTGCGCTTTT........................................................................................................2911.00101000
..............................................................................................................................................................................................GCCAGAGTGAACGCTTATGAGGAG.....................................2411.00101000
...................................................................................................................................................TGGGCATACCACATCGACTGGCAGC...............................................................................2560.67402020
..................................................................................................................................................TTGGGCATACCACATCGACTGGCAG................................................................................2560.33202000
.........................................................................................................................................................TACCACATCGACTGGCAGC...............................................................................1960.33202000
...................................................................................................................................................TGGGCATACCACATCGACTGG...................................................................................2160.33201010
....................................................................................................................................................GGGCATACCACATCGACTGGCAGC...............................................................................2460.17101000
....................................................................................................................................................GGGCATACCACATCGACTGGCAG................................................................................2360.17101000
...................................................................................................................................................TGGGCATACCACATCGACTGGCAGCAA.............................................................................2760.17101000
.........................................................................................................................................................TACCACATCGACTGGCAGCA..............................................................................2060.17101000
...................................................................................................................................................TGGGCATACCACATCGACTGGCA.................................................................................2360.17101000
..................................................................................................................................................TTGGGCATACCACATCGACTGG...................................................................................2260.17100010
...................................................................................................................................................TGGGCATACCACATCGACTG....................................................................................2060.17101000
........................................................................................................................................................ATACCACATCGACTGGCAA................................................................................1960.17101000
..................................................................................................................................................TTGGGCATACCACATCGACTGGCAGC...............................................................................2660.17101000
...................................................................................................................................................TGGGCATACCACATCGACTGGCAG................................................................................2460.17101000
............................................................................................................................................................CACATCGACTGGCAGCATAGA..........................................................................2170.14101000

Generated: 05/18/2015 at 06:53 AM