ID:

dwi_3362

 Coordinate:

scf2_1100000004943:8218435-8218585 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.2 -16.2 -16.0

Flybase annnotation

CDS [Dwil\GK14047-cds]; exon [dwil_GLEANR_14367:1]; intron [Dwil\GK14047-in]

No Repeatable elements found

mature
star
  1. scf2_1100000002721:1541-1562 -
  2. scf2_1100000003996:370-391 +
  3. scf2_1100000004368:3019-3040 -
  4. scf2_1100000004513:839259-839280 -
  5. scf2_1100000004514:3187453-3187474 -
  6. scf2_1100000004576:2956-2977 -
  7. scf2_1100000004585:370107-370128 -
  8. scf2_1100000004585:7071503-7071524 -
  9. scf2_1100000004713:20976-20997 +
  10. scf2_1100000004762:3621563-3621584 -
  11. scf2_1100000004852:287060-287081 +
  12. scf2_1100000004888:859707-859728 +
  13. dwi_3362  scf2_1100000004943:8218499-8218520 +
  14. scf2_1100000004947:202664-202685 -
  15. scf2_1100000000500:17660-17681 -
  16. scf2_1100000000169:752-773 -
  17. scf2_1100000000713:329-350 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACAACAGCAAACCCGTTGGGCATGTGGGGATGATGGACACGGCATTGATGTGAGTATCTAAACCTCGCTATGTCTATTTAATGTTAATGTAATCTACTGAGGGGGAGATTCAATACAAAAACCAGAGGGCCGGGGCTAACTTCGACCGCGTCAAAGTTTGTATACCCTTGCAACTTTTTTGGTAAAAACGTTTTATTTTAAAAGGCTAATGTTTGCGAAAGAATGGCCTACAATCTTAGCATAGGAAAAA
******************************************************************************************************************.......((((((((((.((((..(((((.(((...))).)))))......)))).))....))))))))....*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
 M020
head
.....................CATGTGGGGATGATGGACACGGC............................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0
...................GGCATGTGGGGATGATGG...................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................TATACCCTTGCAACTTTTTTGGTAAAA............................................................... 27 0 1 1.00 1 1 0 0 0
......................ATGTGGGGATGATGGACAC.................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0
.........AAACCCGTTGGGCATGTGGGGATGATG....................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0
.......................TGTGGGGGTGATGGACACGGC............................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0
.......................TGTGGGGATGATGGACACGGCATTGA.......................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0
...............GTTGGGCACGTTGGGATG.......................................................................................................................................................................................................................... 18 2 9 0.67 6 4 1 0 1
........................................................................................................................................CTAACTTCGACCGCGTCAAAGTTTG.......................................................................................... 25 0 20 0.25 5 5 0 0 0
.....................CAAGTTGGGATGATGGAC.................................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0
..................................................................................................................TACAAAAACCAGAGGGCCGGGG................................................................................................................... 22 0 17 0.12 2 2 0 0 0
.....................................................................................................................................................................................................................TTGCGAAAGAATGGCCTACAATCTTA............ 26 0 20 0.10 2 0 2 0 0
.................................................................................................................................................................................................................ATGTTTGCGAAAGAATGGCCT..................... 21 0 13 0.08 1 0 1 0 0
.................................................................................................................ATACAAAAACCAGAGGGCC....................................................................................................................... 19 0 14 0.07 1 0 0 1 0
..................................................................................................................TACAAAAACCAGAGGGCCGGGGC.................................................................................................................. 23 0 16 0.06 1 1 0 0 0
..................................................................................................................TACAAAAACCAGAGGGCCGGGGCAA................................................................................................................ 25 1 17 0.06 1 1 0 0 0
..................................................................................................................................................................................................................CGTTTGCGAAAGAATGGCCTA.................... 21 1 20 0.05 1 0 1 0 0
................................................................................................................................................................GTATACCCTTGCAACTTTTTTGG.................................................................... 23 0 20 0.05 1 1 0 0 0
...................................................................................................................................................................TACCCTTGCAACTTTTTTGG.................................................................... 20 0 20 0.05 1 1 0 0 0
.........................................................................................................................ACCAGAGGGCCGGGGCTAACTTCGA......................................................................................................... 25 0 20 0.05 1 1 0 0 0
..............................................................................................................................................TCGACCGCGTCAAAGTTTGTA........................................................................................ 21 0 20 0.05 1 0 0 1 0
................................................................................................................................................................................................................AATGTTTGCGAAAGAATGGCC...................... 21 0 20 0.05 1 0 0 0 1

Anti-sense strand reads

TTGTTGTCGTTTGGGCAACCCGTACACCCCTACTACCTGTGCCGTAACTACACTCATAGATTTGGAGCGATACAGATAAATTACAATTACATTAGATGACTCCCCCTCTAAGTTATGTTTTTGGTCTCCCGGCCCCGATTGAAGCTGGCGCAGTTTCAAACATATGGGAACGTTGAAAAAACCATTTTTGCAAAATAAAATTTTCCGATTACAAACGCTTTCTTACCGGATGTTAGAATCGTATCCTTTTT
***************************************************************.......((((((((((.((((..(((((.(((...))).)))))......)))).))....))))))))....****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020
head
 V118
embryo
 M045
female body
..........................................CGGAACTAGACTCATAGA............................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0
....................................................................................................................................................................................................................AAACGCTTTCTTACCGGATGT.................. 21 0 20 0.10 2 0 1 1
................................................................................................................................................................................................................TTACAAACGCTTTCTTACCGGATGT.................. 25 0 12 0.08 1 0 1 0
.............................................................................................................................................................................................................................CTTACCGGATGTTAGAATCG.......... 20 0 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004943:8218385-8218635 + dwi_3362 AACAACA---G--CAAA--CCCGTTGGGCATGTGGGGATGATGGACA---CGGC-ATTGATGT-GAGTATCTAAACCTCGC-------TATGTCTATTT----------------------------AATG---------------------------------TTAATGTAATCTAC---------TG-------AGGGGGAGATTCAATACA-AAAACCAG------------------------------------------------------------------------AGGGCCG-GGGCTAACTTCGAC-CGCGTCAAAGTTTGTATACCCTTGCAACT-------TTTTT---------------GG--------------TAAAAACGT--------------TTTATTTTAAAAGGCTAATG------------------TTT------G------------CGAAAG-----------AATGG---C--------CTACAA--------------------------------T----CTT---AGCA----TA-----GGAAAAA
droVir3 scaffold_12958:3107526-3107746 + GATGGAT---G---GTACAT---------------------------AGG----T-ATC---------------------------------ATT---------------------------------------ATTTATTCTAAATTAAAACTCTCTTATATGAACACAAAATA---------AG------------ACGAAA--------AT-AAAAC--A------------------------------------------------------------------------AGAAAGAAAGGCTATCTTCGGC--ACGCCGAAGATCTAATACCCTTGCAGACCCAACCTTTTTA----TAA----TG-------CTTAATGCTT-----------------------------------------------------------------------TGCCC-GTATCTAAG----AAGCACAGGGAAAATAGTTA-----------A-------TGCCGAGTTTAGT----------------CA-------AG-ATATCT--------TGAAA
droMoj3 scaffold_6540:23969967-23970020 - AACAACA---G--CAGA--CGCGTTGGGCATGCGGCGACG---AGCA---TGGC-ATCGATGT-GAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14830:2469928-2470006 - AGCAGCA---G--CAGA--CACGTTGGGCCTGCGGCGACG---AGCA---CGGC-ATCGATGT-AAGTACATATA---TGA-------TATATATATTT----------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT
dp5 2:24239111-24239168 + AGCAACA---G--CAAA--CGCGTTGGGCATGCGGCGACGATGGACA---CGGC-ATTGATGT-GAGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_3:7008407-7008464 + AACAACA---G--CAAA--CGCGTTGGGCATGCGGCGACGATGGACA---CGGC-ATTGATGT-GAGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13082:1040385-1040608 - ATTAATCTGAGTATCT--------A------------------------------------------------AACAAAATTATACACACATAGTA--------------------------------------TTTTATTCTAATTTTAA------------------TTAACT-A----------------GAAAAATC--A--------TC-TAAAC--A------------------------------------------------------------------------AGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTTATATACCCTTGCAGTT-------GTGCCATTTCCGATGGTTCAGTT---------------------------------------------------------ATATGGCGGC-TATTGG--ATAGAATTGGCCAATCCCTATG----AA-----------A--------------------------------------TTTGGCA------AATCA-------GA-TTATTTT-----G-TCCAA
droBip1 scf7180000395303:4929-5149 - TAATGTG--AGTATGTACAT---------------------------ACA----T-ATG---------------------------------TATATTT---AAA----TTATA-AAATGTTTCTTTAATC---------------------------------TTCTTGAAATACTC---------AA----------------------ATA-AAAAC--A------------------------------------------------------------------------AGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTT-------AAAAC-------------CGGAT-------------------------------------------------------ACATATCGCAAA-CATCGG--ATATAGTTGGCCGATCCTTATG----AG-----------A-A------------------------------------TATGATAATAT-AACCCAATTT---ATTA----TA-----ATACAAA
droKik1 scf7180000301795:54125-54373 - AACAGAC---A--GACAGAC-AGACGGACATG--GCTA-GATCGACT---CGGCTGTTGATGCTGA--------TCAAGAAT-------ATATATACTTTATAGG----GTCGG-AAACGTCTCCTTCACT---------------------------------CCGTTGCAAACTTC---------TG----------------------ACT-GAAAC--A------------------------------------------------------------------------AGAAAGG-AAGCTTACTTCGGC--ACGCCGAAGTTTGTATACCCTTGCAGAT-------TGGTT-------------TTGATATTTATATT--AT------A--AATTCTAATGC------------------------------------------------------------TGAAG----AC--ACACAC----------------------------------------------AAAATAGAGTTTCA-TTA---TATT----TT-----ACCTATA
droFic1 scf7180000454113:2845570-2845738 - ACTTACC---T---------------------------------------------ATG---------------------------------TATATCA---A--------------------------TATTTATTTATTCT---------------------------------A----------------AAAAAATGA-A--------AA-TAAAC--A------------------------------------------------------------------------AGAAAGG-AAGCTAGCTTCGGC--AAGCCCAAGCTTATATACCCTTGCAGTC-------ATCAA----ATATGTC----GA--------------TCAAAATGT--------------ATTTCTATTAGTTTTCCATA------------------TTT------T--------------------------------------------------------------------------------------CGACT-CGTATTT----CT-----ATATAGA
droEle1 scf7180000490284:5779-5987 + GTGAGAA---A--CGTA--GACG---------------------------CAGC-AAAG---------------------------------TATGTCC---AAC----CCGATAGAACCTTA-----------TTTTACTTTAACTTTAA----------------------TGA---------CATAAGTGCAAAACTT--A--------TAAGAAAC--A------------------------------------------------------------------------AGAAAGC-AAGCAAACTTCGGC--AAGCCGAAGTACATATACCCTTGCAGCT-------ATTTC----AAA----AA-------CTAAATACTC------------------------------------------------TTG--------------------------------------------------AAAACGTTA-----------A-AATTGTGATTTACTTGCGT-----------------------GTATGT----TT------AAAAAC
droRho1 scf7180000768606:38279-38522 - AAA----------------CTTATTGAACTTAT-ACAAGTATGAACA---CAGC-TTTATTA---------------------------------GTTG---ATTTCAAAAACC-TTGTGATTTCTTTAGC---------------------------------AAGCCAAAATAT---------G---------------------------------------------------------------------------------------TAAACAAATGACAATACCAACAAGAAAGGAAAGCTAACTTCGGACGGAGCCGAAGTTGATATACCCTTGCAGAA-------TATTC-------------TGTA-AATTATATT--CTTCAAAAT--TATTCATATGGTGTATTCTTAATACTCATAAAAA--------------------------------------------------------------------------------------------------------------GTCTCAACTTCCTAACT----T--------TAAAA
droBia1 scf7180000302291:1511041-1511231 - CATCGAT---G--AAAA--TGTCTAAACCTTGCGACCACTACTT--------------------------------------------------------------------------------TTCCCGT---------------------------------GCGCTGCAATGA---------GTT---------------A--------AT-TAAAC--A------------------------------------------------------------------------AGAAAGG-AAGTTAACTTCGGC--AAGCCGAAGTTTGTATACCCTTGCAGTT-------ATAAG----AAA----TA--------------------------------------------------ATCAAC----TTTAGTACCACCA------TG-T-----------------------G-----------AAATTTTTA-----------AGGATTTTTGCTGACTTCAGT---------------------------GA----TA-----TTAAAAA
droTak1 scf7180000414328:12045-12245 - TAATTAG--GGTATGTAAAT---------------------------T--C----------------------------AC-------AAAATATATTT---AAT----TTTTA-AAA---------------------------------------------------ATAATTTGTAAAATAAGTT---------------GATTTTATGTC-AAAAC--G------------------------------------------------------------------------AGGACGG-AAGCTAACTTCGGC--AAGCCGAAGTTTTAATACCCTTGCAGAT-------TTTAC----GAATGAAAAC--------------------------------------------------TTGAC----AAGAATAGCAACA------TGA------A------------TTAATA-----------AACAA---CAAAAT--------A--------------------------------T----TTT---ATAA----TT-----GAAAAAA
droEug1 scf7180000409676:255908-256016 - AGGG------G--TATA--CATAATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC--G------------------------------------------------------------------------AGGACGA-AAGCTAACTTCGGC--ATGCCGAAGTTTTAATACCCTTGCAGAT-------TTCAC----TAATGAAAAT--------------------------------------------------TTGAC----TAAAATAGCAAC----------------------------------------------------------------------------------------------------------------------------------AGGA
dm3 chr3R:5059234-5059300 - AGCAACA---G--CAGA--CCCGATGGGCGTGCGGCGACGACGGCCA---TGGG-ATCGATGT-AAGTATTCCAGACTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3r:15954438-15954504 + AGCAACA---G--CAGA--CACGATGGGCGTGCGGCGACGACGGCCA---TGGG-ATCGATGT-AAGTATTCCAGACTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_28:571562-571701 + ATTCAAG---A---AAA--TATTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCA-AAATACAGATAAACGCTTCGACAAACCATGGCTTACCTACCCTGACAGTGGATACGAGTATACAGATGAAAATCTCATTTATAAAGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AAGAATACTTTATGA--------------------------------T-------------------CCAAAACAACGAA
droYak3 3L:21795804-21795903 - AATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-AAAAA--A------------------------------------------------------------------------AGGAAAG-AAGCCAGACTTGGC--ATGCCGAAGCTTATATACCCTTGCAGTA-------ATGTTACACAAAAGAAAACATTT-------------------------------------------------------GCAT---------------------------------------------------------------------------------------------------------------------------A----CC-----GAATAAA
droEre2 scaffold_4770:4945628-4945735 + AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC--A------------------------------------------------------------------------AGAAAGG-AAGCTAGCTCTGGC--AAGCCGAAGCTTATAAGCCCTTGAAGTA-------ATTAT----ATA-----------------------------------------------------TTAAACAACTGGTGTGCACCGAA------------T-----------------------A-----------AAAAA---C--------TTATGA--------------------------------T-------------------C------GATAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AACAACA---G--CAAA--CCCGTTGGGCATGTGGGGATGATGGACA---CGGC-ATTGATGT-GAGTATCTAAACCTCGC-------TATGTCTATTT----------------------------AATG---------------------------------TTAATGTAATCTAC---------TG-------AGGGGGAGATTCAATACA-AAAACCAG------------------------------------------------------------------------AGGGCCG-GGGCTAACTTCGAC-CGCGTCAAAGTTTGTATACCCTTGCAACT-------TTTTT---------------GG--------------TAAAAACGT--------------TTTATTTTAAAAGGCTAATG------------------TTT------G------------CGAAAG-----------AATGG---C--------CTACAA--------------------------------T----CTT---AGCA----TA-----GGAAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................CATGTGGGGATGATGGACA---CGGC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..........................GGCATGTGGGGATGATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
............................................................................................................................................................................................................................................................................................................................................TATACCCTTGCAACT-------TTTTT---------------GG--------------TAAAA.......................................................................................................................................................................................2711.00101000
.............................ATGTGGGGATGATGGACA---C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
..............AAA--CCCGTTGGGCATGTGGGGATGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
..............................TGTGGGGATGATGGACA---CGGC-ATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
..................................................................................................................................................................................................................................................................................................................CTAACTTCGAC-CGCGTCAAAGTTTG......................................................................................................................................................................................................................................................25200.25505000
..................................................................................................................................................................................................................TACA-AAAACCAG------------------------------------------------------------------------AGGGCCG-GGG................................................................................................................................................................................................................................................................................22170.12202000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------G------------CGAAAG-----------AATGG---C--------CTACAA--------------------------------T----CTT---A.....................26200.10200200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATG------------------TTT------G------------CGAAAG-----------AATGG---C--------CT.....................................................................21130.08100100
.................................................................................................................................................................................................................ATACA-AAAACCAG------------------------------------------------------------------------AGGGCC.....................................................................................................................................................................................................................................................................................19140.07100010
..................................................................................................................................................................................................................TACA-AAAACCAG------------------------------------------------------------------------AGGGCCG-GGGC...............................................................................................................................................................................................................................................................................23160.06101000
...........................................................................................................................................................................................................................................................................................................................................GTATACCCTTGCAACT-------TTTTT---------------GG--------------............................................................................................................................................................................................23200.05101000
..............................................................................................................................................................................................................................................................................................................................................TACCCTTGCAACT-------TTTTT---------------GG--------------............................................................................................................................................................................................20200.05101000
..........................................................................................................................................................................................................................ACCAG------------------------------------------------------------------------AGGGCCG-GGGCTAACTTCGA......................................................................................................................................................................................................................................................................25200.05101000
........................................................................................................................................................................................................................................................................................................................TCGAC-CGCGTCAAAGTTTGTA....................................................................................................................................................................................................................................................21200.05100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AATG------------------TTT------G------------CGAAAG-----------AATGG---C--------C......................................................................21200.05110000
droVir3
GATGGAT---G---GTACAT---------------------------AGG----T-ATC---------------------------------ATT---------------------------------------ATTTATTCTAAATTAAAACTCTCTTATATGAACACAAAATA---------AG------------ACGAAA--------AT-AAAAC--A------------------------------------------------------------------------AGAAAGAAAGGCTATCTTCGGC--ACGCCGAAGATCTAATACCCTTGCAGACCCAACCTTTTTA----TAA----TG-------CTTAATGCTT-----------------------------------------------------------------------TGCCC-GTATCTAAG----AAGCACAGGGAAAATAGTTA-----------A-------TGCCGAGTTTAGT----------------CA-------AG-ATATCT--------TGAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGGAAAATAGTTA-----------A-------TGCCGAGT....................................................27200.408003000000000000000000000002201000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAG----AAGCACAGGGAAAATAGTTA-----------A-------............................................................27200.204000000000000000000000000010210000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGGAAAATAGTTA-----------A-------TGCCGAG.....................................................26200.204000000000000000000000000002001100000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTAAG----AAGCACAGGGAAAATAC..................................................................................25200.204000000020010000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAG----AAGCACAGGGAAAATAGTTA-----------A-------............................................................25200.153000000000000000000001000001000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTAAG----AAGCACAGGGAAAATAG..................................................................................25200.153000000000000000000001000000100010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-----------A-------TGCCGAGTTTAGT----------------CA-------AG-ATATCT--------.....2770.141000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAG----AAGCACAGGGAAAATAGT.................................................................................24200.102000010000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTAAG----AAGCACAGGGAAAATAGT.................................................................................27200.102000000000000000000000000000000000020000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TACCCTTGCAGACCCAACCT................................................................................................................................................................................................................................20200.102000000000000000000000000000020000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTAAG----AAGCACAGGGAAAAT....................................................................................24200.102000000001000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAG----AAGCACAGGGAAAATAGTTA-----------A-------............................................................26200.102000000000000000000000000001000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTAAG----AAGCACAGGGAA.......................................................................................21200.102000000000000000000000000000002000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-GTATCTAAG----AAGCACAGGGAAAATA...................................................................................27200.102000000000000000000000000001010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAG----AAGCACAGGGAAAATAGTT................................................................................25200.102001000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGGAAAATAGTTA-----------A-------TGCCGAGT....................................................26200.102000000000000000000000000000000020000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGGAAAATAGTTA-----------A-------TGCCGA......................................................25200.102000000000000000000000000000020000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTAAG----AAGCACAGGGAAAATAC..................................................................................26200.102000000000010000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................GAAAGAAAGGCTATCTTCGGC--ACGC...............................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................AGATCTAATACCCTTGCAG.........................................................................................................................................................................................................................................19200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGAAAATAGTTA-----------A-------TGCCG.......................................................21200.051000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CGCCGAAGATCTAATACCCTTGCAGACC......................................................................................................................................................................................................................................28200.051000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-GTATCTAAG----AAGCACAGGG.........................................................................................21200.051000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GAAGATCTAATACCCTTGCAG.........................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG----AAGCACAGGGAAAATAGTTA-----------A-------TGC.........................................................27200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCTAATACCCTTGCAGACCCAACCTTT..............................................................................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-GTATCTAAG----AAGCACAGGGA........................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTAAG----AAGCACAGGGAAAA.....................................................................................23200.051000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGGAAAATAGTTA-----------A-------TG..........................................................21200.051000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC-GTATCTAAG----AAGCACAGGGA........................................................................................23200.051000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGGAAAATAGTTA-----------A-------TGCCGAGTT...................................................28200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAG----AAGCACAGGGAA.......................................................................................18200.051000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................CTAATACCCTTGCAGACCCAAC..................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-GTATCTAAG----AAGCACAGGGAAAATAC..................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GAAGATCTAATACCCTTGCAGAC.......................................................................................................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC-GTATCTAAG----AAGCACAGGGAAA......................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTAAG----AAGCACAGGGAAA......................................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAGGGAAAATAGTTA-----------A-------TGCCGAG.....................................................27200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TAATACCCTTGCAGACCCAACCTTT..............................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTAAG----AAGCACAGGGA........................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCTAATACCCTTGCAGACCCAAC..................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAAAATAGTTA-----------A-------TGCCGA......................................................21200.051000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TT-----------------------------------------------------------------------TGCCC-GTATCTAAG----AAGCACAGGG.........................................................................................26200.051000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCTAATACCCTTGCAGACCCAACCT................................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG----AAGCACAGGGAAAATAGTTA-----------A-------TGCC........................................................27200.051000000010000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AGAAAGAAAGGCTATCTTCGG......................................................................................................................................................................................................................................................................21200.051000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG----AAGCACAGGGAAAATAGTTA-----------A-------TGCC........................................................28200.051000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................A------------------------------------------------------------------------AGAAAGAAAGGCTATCTTCGG......................................................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAG----AAGCACAGGGAAAAT....................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AAGATCTAATACCCTTGCAGACCCAACCT................................................................................................................................................................................................................................29200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAG----AAGCACAGGGAAAATAC..................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
droMoj3
AACAACA---G--CAGA--CGCGTTGGGCATGCGGCGACG---AGCA---TGGC-ATCGATGT-GAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGCAGCA---G--CAGA--CACGTTGGGCCTGCGGCGACG---AGCA---CGGC-ATCGATGT-AAGTACATATA---TGA-------TATATATATTT----------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
AGCAACA---G--CAAA--CGCGTTGGGCATGCGGCGACGATGGACA---CGGC-ATTGATGT-GAGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................ATGCGGCGACGATGGACA---CGGC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000003
............................CATGCGGCGACGATGGACA---CGGC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000002
...........................GCATGCGGCGACGATGGACA---CGGC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000002
.......................TTGGGCATGCGGCGACGATGGACA---C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...................................CGACGATGGACA---CGGC-ATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000100
...............................GCGGCGACGATGGACA---CGGC-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000100
..............................TGCGGCGACGATGGACA---CGGC-ATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000010
..............................TGCGGCGACGATGGACA---CGGC-ATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000100
...............................GCGGCGACGATGGACA---CGGC-AT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000100
.............................ATGCGGCGACGATGGACA---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.............................ATGCGGCGACGATGGACA---CGGC-AT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000100
.............................ATGCGGCGACGATGGACA---CGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
AACAACA---G--CAAA--CGCGTTGGGCATGCGGCGACGATGGACA---CGGC-ATTGATGT-GAGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ATTAATCTGAGTATCT--------A------------------------------------------------AACAAAATTATACACACATAGTA--------------------------------------TTTTATTCTAATTTTAA------------------TTAACT-A----------------GAAAAATC--A--------TC-TAAAC--A------------------------------------------------------------------------AGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTTATATACCCTTGCAGTT-------GTGCCATTTCCGATGGTTCAGTT---------------------------------------------------------ATATGGCGGC-TATTGG--ATAGAATTGGCCAATCCCTATG----AA-----------A--------------------------------------TTTGGCA------AATCA-------GA-TTATTTT-----G-TCCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................TTATATACCCTTGCAGTT-------GTGCCATTT.......................................................................................................................................................................................................................27120.081010000
.........................................................................................................................................................................................................................................................................................................................................TTATATACCCTTGCAGTT-------GTGCCATT........................................................................................................................................................................................................................26120.081010000
.......................................................................................................................................................................................................................................................................................................................................GTTTATATACCCTTGCAGTT-------GTGCCATA........................................................................................................................................................................................................................28120.081010000
...................................................................................................................................................................................................................................................................................................................................................................................TCAGTT---------------------------------------------------------ATATGGCGGC-TATTGG--ATA..........................................................................................................................25200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTT---------------------------------------------------------ATATGGCGGC-TATTGG--.............................................................................................................................24200.051010000
.......................................................................................................................................................................................................................TAAAC--A------------------------------------------------------------------------AGAAAGGAAAGCTAA............................................................................................................................................................................................................................................................................21200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................TCAGTT---------------------------------------------------------ATATGGCGGC-TATTG................................................................................................................................21200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTATG----AA-----------A--------------------------------------TTTGGCA------AATCA-------GA-...................25200.051100000
droBip1
TAATGTG--AGTATGTACAT---------------------------ACA----T-ATG---------------------------------TATATTT---AAA----TTATA-AAATGTTTCTTTAATC---------------------------------TTCTTGAAATACTC---------AA----------------------ATA-AAAAC--A------------------------------------------------------------------------AGAAAGGAAAGCTAACTTCGGGCGGAGCCGAAGTTGATATACCCTTGCAGTT-------AAAAC-------------CGGAT-------------------------------------------------------ACATATCGCAAA-CATCGG--ATATAGTTGGCCGATCCTTATG----AG-----------A-A------------------------------------TATGATAATAT-AACCCAATTT---ATTA----TA-----ATACAAASizeHit CountTotal NormTotal
No Reads
droKik1
AACAGAC---A--GACAGAC-AGACGGACATG--GCTA-GATCGACT---CGGCTGTTGATGCTGA--------TCAAGAAT-------ATATATACTTTATAGG----GTCGG-AAACGTCTCCTTCACT---------------------------------CCGTTGCAAACTTC---------TG----------------------ACT-GAAAC--A------------------------------------------------------------------------AGAAAGG-AAGCTTACTTCGGC--ACGCCGAAGTTTGTATACCCTTGCAGAT-------TGGTT-------------TTGATATTTATATT--AT------A--AATTCTAATGC------------------------------------------------------------TGAAG----AC--ACACAC----------------------------------------------AAAATAGAGTTTCA-TTA---TATT----TT-----ACCTATASizeHit CountTotal NormTotal
No Reads
droFic1
ACTTACC---T---------------------------------------------ATG---------------------------------TATATCA---A--------------------------TATTTATTTATTCT---------------------------------A----------------AAAAAATGA-A--------AA-TAAAC--A------------------------------------------------------------------------AGAAAGG-AAGCTAGCTTCGGC--AAGCCCAAGCTTATATACCCTTGCAGTC-------ATCAA----ATATGTC----GA--------------TCAAAATGT--------------ATTTCTATTAGTTTTCCATA------------------TTT------T--------------------------------------------------------------------------------------CGACT-CGTATTT----CT-----ATATAGASizeHit CountTotal NormTotal
No Reads
droEle1
GTGAGAA---A--CGTA--GACG---------------------------CAGC-AAAG---------------------------------TATGTCC---AAC----CCGATAGAACCTTA-----------TTTTACTTTAACTTTAA----------------------TGA---------CATAAGTGCAAAACTT--A--------TAAGAAAC--A------------------------------------------------------------------------AGAAAGC-AAGCAAACTTCGGC--AAGCCGAAGTACATATACCCTTGCAGCT-------ATTTC----AAA----AA-------CTAAATACTC------------------------------------------------TTG--------------------------------------------------AAAACGTTA-----------A-AATTGTGATTTACTTGCGT-----------------------GTATGT----TT------AAAAACSizeHit CountTotal NormTotal
No Reads
droRho1
AAA----------------CTTATTGAACTTAT-ACAAGTATGAACA---CAGC-TTTATTA---------------------------------GTTG---ATTTCAAAAACC-TTGTGATTTCTTTAGC---------------------------------AAGCCAAAATAT---------G---------------------------------------------------------------------------------------TAAACAAATGACAATACCAACAAGAAAGGAAAGCTAACTTCGGACGGAGCCGAAGTTGATATACCCTTGCAGAA-------TATTC-------------TGTA-AATTATATT--CTTCAAAAT--TATTCATATGGTGTATTCTTAATACTCATAAAAA--------------------------------------------------------------------------------------------------------------GTCTCAACTTCCTAACT----T--------TAAAASizeHit CountTotal NormTotal
No Reads
droBia1
CATCGAT---G--AAAA--TGTCTAAACCTTGCGACCACTACTT--------------------------------------------------------------------------------TTCCCGT---------------------------------GCGCTGCAATGA---------GTT---------------A--------AT-TAAAC--A------------------------------------------------------------------------AGAAAGG-AAGTTAACTTCGGC--AAGCCGAAGTTTGTATACCCTTGCAGTT-------ATAAG----AAA----TA--------------------------------------------------ATCAAC----TTTAGTACCACCA------TG-T-----------------------G-----------AAATTTTTA-----------AGGATTTTTGCTGACTTCAGT---------------------------GA----TA-----TTAAAAASizeHit CountTotal NormTotal
No Reads
droTak1
TAATTAG--GGTATGTAAAT---------------------------T--C----------------------------AC-------AAAATATATTT---AAT----TTTTA-AAA---------------------------------------------------ATAATTTGTAAAATAAGTT---------------GATTTTATGTC-AAAAC--G------------------------------------------------------------------------AGGACGG-AAGCTAACTTCGGC--AAGCCGAAGTTTTAATACCCTTGCAGAT-------TTTAC----GAATGAAAAC--------------------------------------------------TTGAC----AAGAATAGCAACA------TGA------A------------TTAATA-----------AACAA---CAAAAT--------A--------------------------------T----TTT---ATAA----TT-----GAAAAAASizeHit CountTotal NormTotal
No Reads
droEug1
AGGG------G--TATA--CATAATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC--G------------------------------------------------------------------------AGGACGA-AAGCTAACTTCGGC--ATGCCGAAGTTTTAATACCCTTGCAGAT-------TTCAC----TAATGAAAAT--------------------------------------------------TTGAC----TAAAATAGCAAC----------------------------------------------------------------------------------------------------------------------------------AGGASizeHit CountTotal NormTotal
No Reads
dm3
AGCAACA---G--CAGA--CCCGATGGGCGTGCGGCGACGACGGCCA---TGGG-ATCGATGT-AAGTATTCCAGACTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................CGATGGGCGTGCGGCGACGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004
........................TGGGCGTGCGGCGACGACGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGA--CCCGATGGGCGTGCGGCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......A---G--CAGA--CCCGATGGGCGTGCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCGTGCGGCGACGACGGCCA---TGGG-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............................GCGGCGACGACGGCCA---TGGG-AT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCAACA---G--CAGA--CCCGATGGGCGTGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................A--CCCGATGGGCGTGCGGCGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............GA--CCCGATGGGCGTGCGGCGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...AACA---G--CAGA--CCCGATGGGCGTGCGGCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................CCGATGGGCGTGCGGCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................TGCGGCGACGACGGCCA---TGGG-ATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................GCGGCGACGACGGCCA---TGGG-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GGGCGTGCGGCGACGACGGCCA---T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GA--CCCGATGGGCGTGCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GA--CCCGATGGGCGTGCGGCGACGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................GATGGGCGTGCGGCGACGACGGCCA---T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CGATGGGCGTGCGGCGACGACGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATGGGCGTGCGGCGACGACGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................ATGGGCGTGCGGCGACGACGGCCA---TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................CGTGCGGCGACGACGGCCA---TGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGCGGCGACGACGGCCA---TGGG-A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............GA--CCCGATGGGCGTGCGGCGACGACGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................CGATGGGCGTGCGGCGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................CGACGACGGCCA---TGGG-ATCGATGT-A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................A--CCCGATGGGCGTGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................A--CCCGATGGGCGTGCGGCGACGACGGCCA---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GACGGCCA---TGGG-ATCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATGGGCGTGCGGCGACGACGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...AACA---G--CAGA--CCCGATGGGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................TGGGCGTGCGGCGACGACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.GCAACA---G--CAGA--CCCGATGGGCGTGCGGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GTGCGGCGACGACGGCCA---TGGG-AT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGCAACA---G--CAGA--CCCGATGGGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CGACGGCCA---TGGG-ATCGATAA-C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................ACGGCCA---TGGG-ATCGATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
AGCAACA---G--CAGA--CACGATGGGCGTGCGGCGACGACGGCCA---TGGG-ATCGATGT-AAGTATTCCAGACTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................GTGCGGCGACGACGGCCA---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200000000002000000
..............................................A---TGGG-ATCGATGT-AAGTATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
droSec2
ATTCAAG---A---AAA--TATTTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCA-AAATACAGATAAACGCTTCGACAAACCATGGCTTACCTACCCTGACAGTGGATACGAGTATACAGATGAAAATCTCATTTATAAAGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---AAGAATACTTTATGA--------------------------------T-------------------CCAAAACAACGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-AAAAA--A------------------------------------------------------------------------AGGAAAG-AAGCCAGACTTGGC--ATGCCGAAGCTTATATACCCTTGCAGTA-------ATGTTACACAAAAGAAAACATTT-------------------------------------------------------GCAT---------------------------------------------------------------------------------------------------------------------------A----CC-----GAATAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC--A------------------------------------------------------------------------AGAAAGG-AAGCTAGCTCTGGC--AAGCCGAAGCTTATAAGCCCTTGAAGTA-------ATTAT----ATA-----------------------------------------------------TTAAACAACTGGTGTGCACCGAA------------T-----------------------A-----------AAAAA---C--------TTATGA--------------------------------T-------------------C------GATAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 06:56 AM