ID:

dwi_3304

 Coordinate:

scf2_1100000004943:6095308-6095458 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.6 -23.6 -23.6

Flybase annnotation

exon [dwil_GLEANR_14245:2]; CDS [Dwil\GK13924-cds]; intron [Dwil\GK13924-in]

No Repeatable elements found

mature
  1. dwi_3285  scf2_1100000004943:5619330-5619355 -
  2. dwi_3304  scf2_1100000004943:6095404-6095429 +
  3. scf2_1100000004943:6100097-6100122 +
star
  1. scf2_1100000004943:5921256-5921280 +
  2. dwi_3304  scf2_1100000004943:6095325-6095349 +
  3. scf2_1100000004943:6100018-6100042 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAACTCGGGAGCTGAATTTGCTCGGCATTCCCATCTGGTGGGACGATGGGGTATACATTTCTCCCTATAATCGAGGCGTTCGTTTTAGGAGCTACCCGTTTTCCAAAAGGACGGTTGCAGCAGTTATGCTTCGAGTGTATCAGAAGTACTATATTACTTCTCCAAACCGGCATGAATTCCGGGTGAAAGATTCCTGGATTTATATTTGCGGATATAAACCAGATCGATTCATTAAAATAATACAAAATTTC
*******************************************************************...(((((((((..(((......((...(((((((.....)))))))..)))))....))))))))).......(((((((......)))))))((.....))..******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 M020
head
 V119
head
..................................................................................................................................................TACTATATTACTTCTCCAAACCGGCA............................................................................... 26 0 3 6.33 19 18 1 0 0 0
............TGAATTTGCTCGGCATTCCCATCTGG..................................................................................................................................................................................................................... 26 0 3 5.33 16 15 1 0 0 0
...................................................................TAATCGAGGCGTTCGTTTTAGGAGC............................................................................................................................................................... 25 0 3 4.67 14 13 0 0 1 0
............TGAATTTGCTCGGCATTCCCATCTG...................................................................................................................................................................................................................... 25 0 3 2.00 6 3 3 0 0 0
...................................................................................................................TGCAGCAGTTATGCTTCGAGTGTAT............................................................................................................... 25 0 2 1.50 3 2 1 0 0 0
.....................................................................................................................................................TATATTACTTCTCCAAACCGGCA............................................................................... 23 0 3 1.33 4 4 0 0 0 0
....................................................................................................TTCCAAAAGGACGGTTGCAGCAGTTA............................................................................................................................. 26 0 4 1.25 5 5 0 0 0 0
.....................................................................................TAGGAGCTACCCGTTTTCCAAAAGGACG.......................................................................................................................................... 28 0 4 1.25 5 2 2 1 0 0
..........................................................TTCTCCCTATAATCGAGGCGTTCGTTT...................................................................................................................................................................... 27 0 2 1.00 2 2 0 0 0 0
.AACTCGGGAGCTGAATTTGCTCGGCA................................................................................................................................................................................................................................ 26 0 3 1.00 3 3 0 0 0 0
.................................................................TATAATCGAGGCGTTCGTTTTAGGAGC............................................................................................................................................................... 27 0 3 1.00 3 2 0 1 0 0
...................................................................................................TTTCCAAAAGGACGGTTGCAGCAGT............................................................................................................................... 25 0 4 1.00 4 4 0 0 0 0
..................TGCTCGGCATTCCCATCTGGTGGGAC............................................................................................................................................................................................................... 26 0 3 1.00 3 3 0 0 0 0
......................................TGGGACGATGGGGTATACATTTCTC............................................................................................................................................................................................ 25 0 2 1.00 2 2 0 0 0 0
....................................................................AATCGAGGCGTTCGTTTTAGGAGC............................................................................................................................................................... 24 0 3 1.00 3 3 0 0 0 0
...................................................................................................TTTCCAAAAGGACGGTTGCAGCAGTTA............................................................................................................................. 27 0 4 0.75 3 3 0 0 0 0
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTT.............................................................................................................................. 24 0 4 0.75 3 3 0 0 0 0
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTTATG........................................................................................................................... 27 0 4 0.75 3 1 0 2 0 0
..................................................................................................................................................TACTATATTACTTCTCCAAACCGGC................................................................................ 25 0 3 0.67 2 2 0 0 0 0
..................TGCTCGGCATTCCCATCTGGTGGGATA.............................................................................................................................................................................................................. 27 2 3 0.67 2 1 1 0 0 0
.AACTCGGGAGCTGAATTTGCTCGG.................................................................................................................................................................................................................................. 24 0 3 0.67 2 2 0 0 0 0
..............AATTTGCTCGGCATTCCCATCTGG..................................................................................................................................................................................................................... 24 0 3 0.67 2 2 0 0 0 0
............TGAATTTGCTCGGCATTCCCATCTGGT.................................................................................................................................................................................................................... 27 0 3 0.67 2 2 0 0 0 0
.....................................................TACATTTCTCCCTATAATCGAGGCGT............................................................................................................................................................................ 26 0 3 0.67 2 2 0 0 0 0
.....................................................................................................................................................TATATTACTTCTCCAAACCGGCATGA............................................................................ 26 0 3 0.67 2 2 0 0 0 0
.....................................................................................................................................................TATATTACTTCTCCAAACCGGCATGAAT.......................................................................... 28 0 3 0.67 2 2 0 0 0 0
...................................................................TAATCGAGGCGTTCGTTTTAGGAG................................................................................................................................................................ 24 0 3 0.67 2 2 0 0 0 0
..................TGCTCGGCATTCCCATCTGGTGGG................................................................................................................................................................................................................. 24 0 3 0.67 2 2 0 0 0 0
........................................................................................................................................................................................................TATATTTGCGGATATAAACCAGATCGA........................ 27 0 7 0.57 4 4 0 0 0 0
...................................................TATACATTTCTGCCTATAATCGAGGCGT............................................................................................................................................................................ 28 1 2 0.50 1 1 0 0 0 0
...........................................................TCTCCCTATAATCGAGGCGTTCGTTT...................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
...................................................TATACATTTCTCCCTATAATCGAGGCGG............................................................................................................................................................................ 28 1 2 0.50 1 1 0 0 0 0
......................................TGGGACGATGGGGTATACATTTCTCCAT......................................................................................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0
...............................................................................TCGTTTTAGGAGCTACCCGTTTTCC................................................................................................................................................... 25 0 4 0.50 2 2 0 0 0 0
...................................................TATACATTTCTCCCTATAATCGAGGCGT............................................................................................................................................................................ 28 0 2 0.50 1 1 0 0 0 0
........................................................................................................................CAGTTATGCTTCGAGTGTATCAGAA.......................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
...................................................................................................................TGCAGCAGTTATGCTTCGAGTGTATC.............................................................................................................. 26 0 2 0.50 1 1 0 0 0 0
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTTATGC.......................................................................................................................... 28 0 2 0.50 1 0 0 1 0 0
...................................................................................TTTAGGAGCTACCCGTTTTCCAAAAGG............................................................................................................................................. 27 0 4 0.50 2 1 1 0 0 0
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTTA............................................................................................................................. 25 0 4 0.50 2 2 0 0 0 0
...........................................................TCTCCCTATAATCGAGGCGTTCG......................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
......................................TGGGACGATGGGGTATACATTTCTCCCTT........................................................................................................................................................................................ 29 1 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................................................................TTATATTTGCGGATATAAACCAGATCG......................... 27 0 7 0.43 3 3 0 0 0 0
..........................................................................................................................................................TACTTCTCCAAACCGGCATGAATT......................................................................... 24 0 3 0.33 1 1 0 0 0 0
...................GCTCGGCATTCCCATCTGGTGGGA................................................................................................................................................................................................................ 24 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................TATTACTTCTCCAAACCGGCATGAAT.......................................................................... 26 0 3 0.33 1 1 0 0 0 0
.....................................................TACATTTCTCCCTATAATCGA................................................................................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0
............TGAATTTGCTCGGCATTCCCATCTGGC.................................................................................................................................................................................................................... 27 1 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................ACTTCTCCAAACCGGCATGAAT.......................................................................... 22 0 3 0.33 1 1 0 0 0 0
...................................................................................................................................................ACTATATTACTTCTCCAAACCGGCA............................................................................... 25 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................TACTATATTACTTCTCCAAACCGGCATA............................................................................. 28 1 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................TATATTACTTCTCCAAACCGGCATG............................................................................. 25 0 3 0.33 1 0 1 0 0 0
.................................................................TATAATCGAGGCGTTCGTTTTAGGA................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0
AAACTCGGGAGCTGAATTTGCTCGG.................................................................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0
.................TTGCTCGGCATTCCCATCTGGTGGG................................................................................................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0
..........GCTGAATTTGCTCGGCATTCCCATCTGG..................................................................................................................................................................................................................... 28 0 3 0.33 1 1 0 0 0 0
.AACTCGGGAGCTGAATTTGCTCGTAC................................................................................................................................................................................................................................ 26 3 3 0.33 1 1 0 0 0 0
..................TGCTCGGCATTCCCATCTGGTGGGAT............................................................................................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
..................TGCTCGGCATTCCCATCTGGTG................................................................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0
..ACTCGGGAGCTGAATTTGCTC.................................................................................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0
............................TCCCATCTGGTGGGACGATGG.......................................................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0
............TGAATTTGCTCGGCATTCCCATCTGGA.................................................................................................................................................................................................................... 27 1 3 0.33 1 0 1 0 0 0
...................................................................TAATCGAGGCGTTCGTTTTAGG.................................................................................................................................................................. 22 0 3 0.33 1 1 0 0 0 0
..........................................................................................................................................................TACTTCTCCAAACCGGCATGAAT.......................................................................... 23 0 3 0.33 1 0 1 0 0 0
.AACTCGGGAGCTGAATTTGCTCGGTA................................................................................................................................................................................................................................ 26 1 3 0.33 1 1 0 0 0 0
.............GAATTTGCTCGGCATTCCCATCTGG..................................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0
..................TGCTCGGCATTCCCATCTGGTGGGACGA............................................................................................................................................................................................................. 28 0 3 0.33 1 1 0 0 0 0
AAACTCGGGAGCTGAATTTGCTCGGC................................................................................................................................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0
.................TTGCTCGGCATTCCCATCTGGTG................................................................................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
.................TTGCTCGGCATTCCCATCTGG..................................................................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0
..................TGCTCGGCATTCCCATCTGGAGG.................................................................................................................................................................................................................. 23 1 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................ACTTCTCCAAACCGGCATGAATTCCGGG.................................................................... 28 0 3 0.33 1 1 0 0 0 0
....TCGGGAGCTGAATTTGCTCGGCATTC............................................................................................................................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................TACTATATTACTTCTCCAAACCGG................................................................................. 24 0 3 0.33 1 1 0 0 0 0
............TGAATTTGCTCGGCATTCCCATC........................................................................................................................................................................................................................ 23 0 3 0.33 1 1 0 0 0 0
.................TTGCTCGGCATTCCCATCTGGTGGGACA.............................................................................................................................................................................................................. 28 1 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................TATATTACTTCTCCAAACCGGCATGAA........................................................................... 27 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................TACTATATTACTTCTCCAAACCGGCAA.............................................................................. 27 1 3 0.33 1 1 0 0 0 0
..................TGCTCGGCATTCCCATCTGGTGGGA................................................................................................................................................................................................................ 25 0 3 0.33 1 1 0 0 0 0
..................................................................ATAATCGAGGCGTTCGTTTTAGGAG................................................................................................................................................................ 25 0 3 0.33 1 1 0 0 0 0
...................................................................TAATCGAGGCGTTCGTTTTAGGAGCTT............................................................................................................................................................. 27 1 3 0.33 1 1 0 0 0 0
..................................................................................................................................................TACTATATTACTTCTCCAAACCGGCAT.............................................................................. 27 0 3 0.33 1 1 0 0 0 0
..............................................................................................................................................................................................................TGCGGATATAAACCAGATCGATTCAT................... 26 0 7 0.29 2 1 0 0 0 1
.......................................................................................................................................................................................................TTATATTTGCGGATATAAACCAGAT........................... 25 0 7 0.29 2 2 0 0 0 0
.......................................................................................................................................................................................TGAAAGATTCCTGGATTTATATTTGCG......................................... 27 0 7 0.29 2 2 0 0 0 0
...................................................................................................TTTCCAAAAGGACGGTTGCAGCAGTA.............................................................................................................................. 26 1 4 0.25 1 1 0 0 0 0
.................................................................................................................................TTCGAGTGTATCAGAAGTACTATATTA............................................................................................... 27 0 4 0.25 1 1 0 0 0 0
...................................................................................................TTTCCAAAAGGACGGTTGCA.................................................................................................................................... 20 0 4 0.25 1 1 0 0 0 0
...................................................................................................TTTCCAAAAGGACGGTTGCAGCAG................................................................................................................................ 24 0 4 0.25 1 1 0 0 0 0
...................................................................................................TTTCCAAAAGGACGGTTGCAGC.................................................................................................................................. 22 0 4 0.25 1 0 0 1 0 0
...................................................................................................................................CGAGTGTATCAGAAGTACTATATTAC.............................................................................................. 26 0 4 0.25 1 1 0 0 0 0
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTTATGA.......................................................................................................................... 28 1 4 0.25 1 0 0 1 0 0
..................................................................................................ATTTCCAAAAGGACGGTTGCAGCAGT............................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0
...................................................................................................................................CGAGTGTATCAGAAGTACTATATTACT............................................................................................. 27 0 4 0.25 1 1 0 0 0 0
...................................................................................................TTTCCAAAAGGACGGTTGCAGCAGTTT............................................................................................................................. 27 1 4 0.25 1 1 0 0 0 0
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTTATAA.......................................................................................................................... 28 2 4 0.25 1 0 0 1 0 0
..........................................................................GGCGTTCGTTTTAGGAGCTACCCGTT....................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0
.....................................................................................TAGGAGCTACCCGTTTTCCAAAATGACGG......................................................................................................................................... 29 1 4 0.25 1 0 0 1 0 0
..................................................................................................TTTTCCAAAAGGACGGTTGCAGC.................................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0
......................................................................................................CCAAAAGGACGGTTGCAGCAGTTA............................................................................................................................. 24 0 4 0.25 1 1 0 0 0 0
....................................................................................TTAGGAGCTACCCGTTTTCCAAAAGGA............................................................................................................................................ 27 0 4 0.25 1 1 0 0 0 0
....................................................................................................TTCCAAAAGGACGGTTGCAGCAGT............................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
....................................................................................................TTCCAAAAGGACGGTTGCAGCAGTT.............................................................................................................................. 25 0 4 0.25 1 1 0 0 0 0
.......................................................................................................CAAAAGGACGGTTGCAGCAGTTA............................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTTTAG........................................................................................................................... 27 2 4 0.25 1 0 0 1 0 0
.......................................................................................................................................TGTATCAGAAGTACTATATTACT............................................................................................. 23 0 5 0.20 1 0 1 0 0 0
.....................................................................................................................................AGTGTATCAGAAGTACTATATTACT............................................................................................. 25 0 5 0.20 1 1 0 0 0 0
.......................................................................................................................................TGTATCAGAAGTACTATATTACTTC........................................................................................... 25 0 5 0.20 1 1 0 0 0 0
......................................TGGGACGATGGGGAATACATTTCTCC........................................................................................................................................................................................... 26 1 5 0.20 1 1 0 0 0 0
.......................................................................................................................................TGTATCAGAAGTACTATATTACTT............................................................................................ 24 0 5 0.20 1 1 0 0 0 0
....................................................................................................................................................................................................................TATAAACCAGATCGATTCATTAAAATAA........... 28 0 6 0.17 1 0 1 0 0 0
......................................................................................................................................................................................................................TAAACCAGATCGATTCATTAAAATA............ 25 0 6 0.17 1 1 0 0 0 0
....................................................................................................................................................................................................................TATAAACCAGATCGATTCATTAAAA.............. 25 0 6 0.17 1 1 0 0 0 0
........................................................................................................................................................................................................TATATTTGCGGATATAAACCAGATCG......................... 26 0 7 0.14 1 1 0 0 0 0
.............................................................................................................................................................................................................TTGCGGATATAAACCAGATCGATTCAT................... 27 0 7 0.14 1 0 1 0 0 0
.......................................................................................................................................................................................TGAAAGATTCCTGGATTTATATTTGCGG........................................ 28 0 7 0.14 1 1 0 0 0 0
........................................................................................................................................................................................................TATATTTGCGGATATAAACCAGATCGAT....................... 28 0 7 0.14 1 1 0 0 0 0
...................................................................................................................................CGAGTGTAGCAGAAGAAC...................................................................................................... 18 2 7 0.14 1 0 0 0 1 0
..............................................................................................................................................................................................................TGCGGATATAAACCAGATCGA........................ 21 0 7 0.14 1 1 0 0 0 0
.......................................................................................................................................................................................TGAAAGATTCCTGGATTTATATT............................................. 23 0 7 0.14 1 1 0 0 0 0
..........................................................................................................................................................................................................TATTTGCGGATATAAACCAGATCGATT...................... 27 0 7 0.14 1 1 0 0 0 0
........................................................................................................................................................................................................TATATTTGCGGATATAAACTAGATCGA........................ 27 1 7 0.14 1 0 1 0 0 0
........................................................................................................................................................................................GAAAGATTCCTGGATTTATATTTGCGG........................................ 27 0 7 0.14 1 1 0 0 0 0
...............................................................................................................................................................................................TCCTGGATTTATATTTGCGGATATAAAC................................ 28 0 7 0.14 1 1 0 0 0 0
.......................................................................................................................................................................................TGAAAGATTCCTGGATTTATATTTG........................................... 25 0 7 0.14 1 1 0 0 0 0
.......................................................................................................................................................................................TGAAAGATTCCTGGATTTATATTTGC.......................................... 26 0 7 0.14 1 1 0 0 0 0
................................................................................................................................................................................................CCTGGATTTATATTTGCGGATATAA.................................. 25 0 8 0.13 1 1 0 0 0 0
..............................................................................................................................................................................................TTCCTGGATTTATATTTGCGGATATAA.................................. 27 0 8 0.13 1 1 0 0 0 0
...............................................................................................................................................................................................TCCTGGATTTATATTTGCGGATATAA.................................. 26 0 8 0.13 1 1 0 0 0 0
............................................................................CGGTCGTTTTAGGTTCTACC........................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0
............................................................................................................................................................................................GATTCCTGGATTTATATTTGCGGATA..................................... 26 0 8 0.13 1 1 0 0 0 0
.........................................................................................................................................................................................AAAGATTCCTGGATTTATATTTGCGG........................................ 26 0 8 0.13 1 1 0 0 0 0
...............................................................................................................................................................................ATTCCGGATGAGACATTCC......................................................... 19 3 13 0.08 1 1 0 0 0 0
.................................TCTGGTGGGAGGGTGGGG........................................................................................................................................................................................................ 18 2 18 0.06 1 1 0 0 0 0

Anti-sense strand reads

TTTGAGCCCTCGACTTAAACGAGCCGTAAGGGTAGACCACCCTGCTACCCCATATGTAAAGAGGGATATTAGCTCCGCAAGCAAAATCCTCGATGGGCAAAAGGTTTTCCTGCCAACGTCGTCAATACGAAGCTCACATAGTCTTCATGATATAATGAAGAGGTTTGGCCGTACTTAAGGCCCACTTTCTAAGGACCTAAATATAAACGCCTATATTTGGTCTAGCTAAGTAATTTTATTATGTTTTAAAG
*******************************************************************************...(((((((((..(((......((...(((((((.....)))))))..)))))....))))))))).......(((((((......)))))))((.....))..******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
......................................................................................................GGTTTTCCTGCCAACGTCGTCAA.............................................................................................................................. 23 0 4 0.75 3 3 0 0
.....................................................................................................................GTCGTCAATACGAAGCTCACATA............................................................................................................... 23 0 2 0.50 1 1 0 0
.................................AGACCACCCTGCTACCCCATATG................................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0
.......................................CCCTGCTACCCCATATGTAAAGAG............................................................................................................................................................................................ 24 0 2 0.50 1 1 0 0
...................................................ATATGTAAAGAGGGATATTAGCTC................................................................................................................................................................................ 24 0 2 0.50 1 1 0 0
.....................................................................TAGCTCCGCAAGCAAAATCCTCGA.............................................................................................................................................................. 24 0 3 0.33 1 1 0 0
.................................................................................................................................................CATGATATAATGAAGAGGTTTGGCCGT............................................................................... 27 0 3 0.33 1 1 0 0
.........TCGACTTAAACGAGCCGTA............................................................................................................................................................................................................................... 19 0 3 0.33 1 0 1 0
....................................................TATGTAAAGAGGGCTAGCAGC.................................................................................................................................................................................. 21 3 3 0.33 1 1 0 0
......................................................................AGCTCCGCAAGCAAAATCCTCGA.............................................................................................................................................................. 23 0 3 0.33 1 1 0 0
.........................................................................................................................................................................CGTACTTAAGGCCCACTTTCTAAG.......................................................... 24 0 3 0.33 1 1 0 0
....AGCCCTCGACTTAAACGAGCCGT................................................................................................................................................................................................................................ 23 0 3 0.33 1 1 0 0
...........GACTTAAACGAGCCGTAAGGGTAGAC...................................................................................................................................................................................................................... 26 0 3 0.33 1 0 1 0
.......................................................................................CCTCGATGGGCAAAAGGTTTTCCT............................................................................................................................................ 24 0 4 0.25 1 0 1 0
..................................................................................................................................AGCTCACATAGTCTTCATGATATAATG.............................................................................................. 27 0 4 0.25 1 1 0 0
............................................................................GCAAGCAAAATCCTCGATGGGCA........................................................................................................................................................ 23 0 4 0.25 1 1 0 0
..............................................................................................GGGCAAAAGGTTTTCCTGCCAACGTCGT................................................................................................................................. 28 0 4 0.25 1 1 0 0
.....................................................................................................................................TCACATAGTCTTCATGATATAATGAA............................................................................................ 26 0 5 0.20 1 1 0 0
.......................................................................................................................................ACATAGTCTTCATGATATAATGAA............................................................................................ 24 0 5 0.20 1 1 0 0
.........................................................................................................................................................................................................................TGGTCTAGCTAAGTAATTTTATTAT......... 25 0 6 0.17 1 1 0 0
........................................................................................................................................CAGAGTCTACATGATATAATAA............................................................................................. 22 3 6 0.17 1 0 1 0
.....................................................................................................................................................................TGGCCGGACGTAAGGCGCAC.................................................................. 20 3 6 0.17 1 0 0 1
..........................................................................................................................................................................................TTCTAAGGACCTAAATATAAACG.......................................... 23 0 9 0.11 1 1 0 0
........................................................................................................................................................................................................................TCGGTAAAGCTAAGTAATTTT.............. 21 3 20 0.10 2 0 2 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004943:6095258-6095508 + dwi_3304 AAACTCGGGAGCTGAATTTGCTCGGCATTCCCATCTGGTGGGACGATGGGGTATACATTTCTCCCTATAATCGAGGCGTTCGTTTTAGGAGCTACCCGTTTTCCAAAAGGACGGTTGCAGCAGTTATGCTTCGAGTGTATCAGAAGTACTATATTACTTCTCCAAACCGGCATGAATTCCGGGTGAAAGATTCCTGGATTTATATTTGCGGATATAAACCAGATCGATTCATTAAAATAATACAAAATTTC
droKik1 scf7180000299257:640-675 + A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATAAATAAATAAATAAATAAAATAAATAAAT--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAACTCGGGAGCTGAATTTGCTCGGCATTCCCATCTGGTGGGACGATGGGGTATACATTTCTCCCTATAATCGAGGCGTTCGTTTTAGGAGCTACCCGTTTTCCAAAAGGACGGTTGCAGCAGTTATGCTTCGAGTGTATCAGAAGTACTATATTACTTCTCCAAACCGGCATGAATTCCGGGTGAAAGATTCCTGGATTTATATTTGCGGATATAAACCAGATCGATTCATTAAAATAATACAAAATTTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................TACTATATTACTTCTCCAAACCGGCA...............................................................................2636.3319018010
............TGAATTTGCTCGGCATTCCCATCTGG.....................................................................................................................................................................................................................2635.3316015010
...................................................................TAATCGAGGCGTTCGTTTTAGGAGC...............................................................................................................................................................2534.6714113000
............TGAATTTGCTCGGCATTCCCATCTG......................................................................................................................................................................................................................2532.00603030
...................................................................................................................TGCAGCAGTTATGCTTCGAGTGTAT...............................................................................................................2521.50302010
.....................................................................................................................................................TATATTACTTCTCCAAACCGGCA...............................................................................2331.33404000
....................................................................................................TTCCAAAAGGACGGTTGCAGCAGTTA.............................................................................................................................2641.25505000
.....................................................................................TAGGAGCTACCCGTTTTCCAAAAGGACG..........................................................................................................................................2841.25502120
..........................................................TTCTCCCTATAATCGAGGCGTTCGTTT......................................................................................................................................................................2721.00202000
.AACTCGGGAGCTGAATTTGCTCGGCA................................................................................................................................................................................................................................2631.00303000
.................................................................TATAATCGAGGCGTTCGTTTTAGGAGC...............................................................................................................................................................2731.00302100
...................................................................................................TTTCCAAAAGGACGGTTGCAGCAGT...............................................................................................................................2541.00404000
..................TGCTCGGCATTCCCATCTGGTGGGAC...............................................................................................................................................................................................................2631.00303000
......................................TGGGACGATGGGGTATACATTTCTC............................................................................................................................................................................................2521.00202000
....................................................................AATCGAGGCGTTCGTTTTAGGAGC...............................................................................................................................................................2431.00303000
...................................................................................................TTTCCAAAAGGACGGTTGCAGCAGTTA.............................................................................................................................2740.75303000
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTT..............................................................................................................................2440.75303000
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTTATG...........................................................................................................................2740.75301200
..................................................................................................................................................TACTATATTACTTCTCCAAACCGGC................................................................................2530.67202000
..................TGCTCGGCATTCCCATCTGGTGGGATA..............................................................................................................................................................................................................2730.67201010
.AACTCGGGAGCTGAATTTGCTCGG..................................................................................................................................................................................................................................2430.67202000
..............AATTTGCTCGGCATTCCCATCTGG.....................................................................................................................................................................................................................2430.67202000
............TGAATTTGCTCGGCATTCCCATCTGGT....................................................................................................................................................................................................................2730.67202000
.....................................................TACATTTCTCCCTATAATCGAGGCGT............................................................................................................................................................................2630.67202000
.....................................................................................................................................................TATATTACTTCTCCAAACCGGCATGA............................................................................2630.67202000
.....................................................................................................................................................TATATTACTTCTCCAAACCGGCATGAAT..........................................................................2830.67202000
...................................................................TAATCGAGGCGTTCGTTTTAGGAG................................................................................................................................................................2430.67202000
..................TGCTCGGCATTCCCATCTGGTGGG.................................................................................................................................................................................................................2430.67202000
........................................................................................................................................................................................................TATATTTGCGGATATAAACCAGATCGA........................2770.57404000
...........................................................TCTCCCTATAATCGAGGCGTTCGTTT......................................................................................................................................................................2620.50101000
...................................................TATACATTTCTCCCTATAATCGAGGCGG............................................................................................................................................................................2820.50101000
...............................................................................TCGTTTTAGGAGCTACCCGTTTTCC...................................................................................................................................................2540.50202000
...................................................TATACATTTCTCCCTATAATCGAGGCGT............................................................................................................................................................................2820.50101000
........................................................................................................................CAGTTATGCTTCGAGTGTATCAGAA..........................................................................................................2520.50101000
...................................................................................................................TGCAGCAGTTATGCTTCGAGTGTATC..............................................................................................................2620.50101000
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTTATGC..........................................................................................................................2820.50100100
...................................................................................TTTAGGAGCTACCCGTTTTCCAAAAGG.............................................................................................................................................2740.50201010
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTTA.............................................................................................................................2540.50202000
...........................................................TCTCCCTATAATCGAGGCGTTCG.........................................................................................................................................................................2320.50101000
......................................TGGGACGATGGGGTATACATTTCTCCCTT........................................................................................................................................................................................2920.50101000
.......................................................................................................................................................................................................TTATATTTGCGGATATAAACCAGATCG.........................2770.43303000
..........................................................................................................................................................TACTTCTCCAAACCGGCATGAATT.........................................................................2430.33101000
...................GCTCGGCATTCCCATCTGGTGGGA................................................................................................................................................................................................................2430.33101000
.......................................................................................................................................................TATTACTTCTCCAAACCGGCATGAAT..........................................................................2630.33101000
.....................................................TACATTTCTCCCTATAATCGA.................................................................................................................................................................................2130.33101000
............TGAATTTGCTCGGCATTCCCATCTGGC....................................................................................................................................................................................................................2730.33101000
...........................................................................................................................................................ACTTCTCCAAACCGGCATGAAT..........................................................................2230.33101000
...................................................................................................................................................ACTATATTACTTCTCCAAACCGGCA...............................................................................2530.33101000
..................................................................................................................................................TACTATATTACTTCTCCAAACCGGCATA.............................................................................2830.33101000
.....................................................................................................................................................TATATTACTTCTCCAAACCGGCATG.............................................................................2530.33100010
.................................................................TATAATCGAGGCGTTCGTTTTAGGA.................................................................................................................................................................2530.33101000
AAACTCGGGAGCTGAATTTGCTCGG..................................................................................................................................................................................................................................2530.33101000
.................TTGCTCGGCATTCCCATCTGGTGGG.................................................................................................................................................................................................................2530.33101000
..........GCTGAATTTGCTCGGCATTCCCATCTGG.....................................................................................................................................................................................................................2830.33101000
.AACTCGGGAGCTGAATTTGCTCGTAC................................................................................................................................................................................................................................2630.33101000
..................TGCTCGGCATTCCCATCTGGTGGGAT...............................................................................................................................................................................................................2630.33101000
..................TGCTCGGCATTCCCATCTGGTG...................................................................................................................................................................................................................2230.33101000
..ACTCGGGAGCTGAATTTGCTC....................................................................................................................................................................................................................................2130.33101000
............................TCCCATCTGGTGGGACGATGG..........................................................................................................................................................................................................2130.33101000
............TGAATTTGCTCGGCATTCCCATCTGGA....................................................................................................................................................................................................................2730.33100010
...................................................................TAATCGAGGCGTTCGTTTTAGG..................................................................................................................................................................2230.33101000
..........................................................................................................................................................TACTTCTCCAAACCGGCATGAAT..........................................................................2330.33100010
.............GAATTTGCTCGGCATTCCCATCTGG.....................................................................................................................................................................................................................2530.33101000
..................TGCTCGGCATTCCCATCTGGTGGGACGA.............................................................................................................................................................................................................2830.33101000
AAACTCGGGAGCTGAATTTGCTCGGC.................................................................................................................................................................................................................................2630.33101000
.................TTGCTCGGCATTCCCATCTGGTG...................................................................................................................................................................................................................2330.33101000
.................TTGCTCGGCATTCCCATCTGG.....................................................................................................................................................................................................................2130.33101000
...........................................................................................................................................................ACTTCTCCAAACCGGCATGAATTCCGGG....................................................................2830.33101000
....TCGGGAGCTGAATTTGCTCGGCATTC.............................................................................................................................................................................................................................2630.33101000
..................................................................................................................................................TACTATATTACTTCTCCAAACCGG.................................................................................2430.33101000
............TGAATTTGCTCGGCATTCCCATC........................................................................................................................................................................................................................2330.33101000
.................TTGCTCGGCATTCCCATCTGGTGGGACA..............................................................................................................................................................................................................2830.33101000
.....................................................................................................................................................TATATTACTTCTCCAAACCGGCATGAA...........................................................................2730.33101000
..................................................................................................................................................TACTATATTACTTCTCCAAACCGGCAA..............................................................................2730.33101000
..................TGCTCGGCATTCCCATCTGGTGGGA................................................................................................................................................................................................................2530.33101000
..................................................................ATAATCGAGGCGTTCGTTTTAGGAG................................................................................................................................................................2530.33101000
...................................................................TAATCGAGGCGTTCGTTTTAGGAGCTT.............................................................................................................................................................2730.33101000
..................................................................................................................................................TACTATATTACTTCTCCAAACCGGCAT..............................................................................2730.33101000
..............................................................................................................................................................................................................TGCGGATATAAACCAGATCGATTCAT...................2670.29201001
.......................................................................................................................................................................................................TTATATTTGCGGATATAAACCAGAT...........................2570.29202000
.......................................................................................................................................................................................TGAAAGATTCCTGGATTTATATTTGCG.........................................2770.29202000
...................................................................................................TTTCCAAAAGGACGGTTGCAGCAGTA..............................................................................................................................2640.25101000
.................................................................................................................................TTCGAGTGTATCAGAAGTACTATATTA...............................................................................................2740.25101000
...................................................................................................TTTCCAAAAGGACGGTTGCA....................................................................................................................................2040.25101000
...................................................................................................TTTCCAAAAGGACGGTTGCAGCAG................................................................................................................................2440.25101000
...................................................................................................TTTCCAAAAGGACGGTTGCAGC..................................................................................................................................2240.25100100
...................................................................................................................................CGAGTGTATCAGAAGTACTATATTAC..............................................................................................2640.25101000
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTTATGA..........................................................................................................................2840.25100100
...................................................................................................................................CGAGTGTATCAGAAGTACTATATTACT.............................................................................................2740.25101000
...................................................................................................TTTCCAAAAGGACGGTTGCAGCAGTTT.............................................................................................................................2740.25101000
.....................................................................................................TCCAAAAGGACGGTTGCAGCAGTTATAA..........................................................................................................................2840.25100100
..........................................................................GGCGTTCGTTTTAGGAGCTACCCGTT.......................................................................................................................................................2640.25101000
..................................................................................................TTTTCCAAAAGGACGGTTGCAGC..................................................................................................................................2340.25101000
......................................................................................................CCAAAAGGACGGTTGCAGCAGTTA.............................................................................................................................2440.25101000
....................................................................................TTAGGAGCTACCCGTTTTCCAAAAGGA............................................................................................................................................2740.25101000
....................................................................................................TTCCAAAAGGACGGTTGCAGCAGT...............................................................................................................................2440.25101000
....................................................................................................TTCCAAAAGGACGGTTGCAGCAGTT..............................................................................................................................2540.25101000
.......................................................................................................CAAAAGGACGGTTGCAGCAGTTA.............................................................................................................................2340.25101000
.......................................................................................................................................TGTATCAGAAGTACTATATTACT.............................................................................................2350.20100010
.....................................................................................................................................AGTGTATCAGAAGTACTATATTACT.............................................................................................2550.20101000
.......................................................................................................................................TGTATCAGAAGTACTATATTACTTC...........................................................................................2550.20101000
.......................................................................................................................................TGTATCAGAAGTACTATATTACTT............................................................................................2450.20101000
....................................................................................................................................................................................................................TATAAACCAGATCGATTCATTAAAATAA...........2860.17100010
......................................................................................................................................................................................................................TAAACCAGATCGATTCATTAAAATA............2560.17101000
....................................................................................................................................................................................................................TATAAACCAGATCGATTCATTAAAA..............2560.17101000
........................................................................................................................................................................................................TATATTTGCGGATATAAACCAGATCG.........................2670.14101000
.............................................................................................................................................................................................................TTGCGGATATAAACCAGATCGATTCAT...................2770.14100010
.......................................................................................................................................................................................TGAAAGATTCCTGGATTTATATTTGCGG........................................2870.14101000
........................................................................................................................................................................................................TATATTTGCGGATATAAACCAGATCGAT.......................2870.14101000
..............................................................................................................................................................................................................TGCGGATATAAACCAGATCGA........................2170.14101000
.......................................................................................................................................................................................TGAAAGATTCCTGGATTTATATT.............................................2370.14101000
..........................................................................................................................................................................................................TATTTGCGGATATAAACCAGATCGATT......................2770.14101000
........................................................................................................................................................................................GAAAGATTCCTGGATTTATATTTGCGG........................................2770.14101000
...............................................................................................................................................................................................TCCTGGATTTATATTTGCGGATATAAAC................................2870.14101000
.......................................................................................................................................................................................TGAAAGATTCCTGGATTTATATTTG...........................................2570.14101000
.......................................................................................................................................................................................TGAAAGATTCCTGGATTTATATTTGC..........................................2670.14101000
................................................................................................................................................................................................CCTGGATTTATATTTGCGGATATAA..................................2580.13101000
..............................................................................................................................................................................................TTCCTGGATTTATATTTGCGGATATAA..................................2780.13101000
...............................................................................................................................................................................................TCCTGGATTTATATTTGCGGATATAA..................................2680.13101000
............................................................................................................................................................................................GATTCCTGGATTTATATTTGCGGATA.....................................2680.13101000
.........................................................................................................................................................................................AAAGATTCCTGGATTTATATTTGCGG........................................2680.13101000
droKik1
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATAAATAAATAAATAAATAAAATAAATAAAT--SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 06:51 AM