dwi_3286

exon [dwil_GLEANR_13712:3]; CDS [Dwil\GK13405-cds]; CDS [Dwil\GK13405-cds]; exon [dwil_GLEANR_13712:2]; intron [Dwil\GK13405-in]

Name	Class	Family	Strand
Helitron-1N1_DVir	RC	Helitron	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTGAGGCAAGCAAACAAATTATGCAACTGGCACTGGAGTCCAACCGGAATGTAAGTATTTCGAGAGTTTACATTGTGTGCATTGTTTACATTAATTTACTTTTGGTGCTTTTTCCGTGGAATTGCGGACGGTACCGTTGCGTCTCTGAGGGACCAGATTGCCCTCACCAGAGAGGTACTTAAGCAAATTGCGGAGGTACGTAAATTTCCGACCCCATCAAATATATATTCTTGATCAGCAAGAAAAGCTGAGTCGATCTACCCATGTCCGTCTGCCTGTCCGTCGCAG ************************************************************************************************************..(((((((..((((....((((((......((((((((((.........)))))...)))))))))))...)))).)))))))(((.((........)))))....................*****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V117 male body	V119 head	M020 head
..............................................................................................................TTTCCGTGGAATTGCGGACGGTA...........................................................................................................................................................	23	0	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................................GACCCCATCAAATATATATTCTTG.......................................................	24	0	1	1.00	1	1	0	0	0
..............................................................AGAGTTTACATTGTGTGCATTGTT..........................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0
....................................................................................................................................ACCGTTGCGTCTCTGAGGGACCAG....................................................................................................................................	24	0	1	1.00	1	1	0	0	0
....................................................................................................................................ACCGTTGCGTCGCTGAGGGACCAG....................................................................................................................................	24	1	1	1.00	1	1	0	0	0
............................................................CGAGAGTTTACATTGTGTGCATTGTT..........................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0
...................................................................................................................................TACCGTTGCGTCTCTGAGGGACCAG....................................................................................................................................	25	0	1	1.00	1	0	1	0	0
...............AAATTATGCAACTGGCACTGGAG..........................................................................................................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0
....................................................................................................................................ACCGTTGCGTCTCTGAGGGAC.......................................................................................................................................	21	0	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................CAAATTGCGGAGGTACGTAAATTTCC...............................................................................	26	0	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................GATCTACCCATGTCCGTCTGCC............	22	0	1	1.00	1	1	0	0	0
.........................................................................................................................................TGCGTCTCTGAGGGACCAGATTG................................................................................................................................	23	0	1	1.00	1	1	0	0	0
...........................................................................................................................................................................GAGGTACTTAAGCAAATTGCGGA..............................................................................................	23	0	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................TAAATTTCCGACCCCATCAAATAT................................................................	24	0	1	1.00	1	1	0	0	0
.......................................................................................................GGTGCTTTTTCCGTGGAATTGCG..................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0
..............................................................................................................TTTCCGTGGAATTGCGGACGGTACCG........................................................................................................................................................	26	0	1	1.00	1	1	0	0	0
....................................................................................................................................ACCGTTGCGTCTCTGAGGGACCA.....................................................................................................................................	23	0	1	1.00	1	1	0	0	0
...................................................................TTACATTGTGTGCATTGTTTACATTAAT.................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0
...........................................CCGGAATGTAAGTATTTCGAGAGTT............................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0
...................................................................................................................................................................TCACCAGAGAGGTACTTAAGCAAAT....................................................................................................	25	0	1	1.00	1	1	0	0	0
................................................................................ATTGTTTACATTAATTTACTTTTG........................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................GATCTACCCATGTCCGTCTGCCT...........	23	0	1	1.00	1	1	0	0	0
...............................................AATGTAAGTATTTCGAGAGTTTAC.........................................................................................................................................................................................................................	24	0	3	0.67	2	2	0	0	0
...............................................AATGTAAGTATTTCGAGAGTTTACA........................................................................................................................................................................................................................	25	0	2	0.50	1	1	0	0	0
...............................................................................................................................................GCGGAGGGACCGGATTGCC..............................................................................................................................	19	3	8	0.13	1	1	0	0	0
.................................................TGTAACTATCCCGAGAGTTT...........................................................................................................................................................................................................................	20	3	9	0.11	1	1	0	0	0
..........................................................................................................GCTTATCCCGTGGGATTGC...................................................................................................................................................................	19	3	16	0.06	1	1	0	0	0
................................................................................................................................................................................GCTTAAGCAGGTTGCGGAG.............................................................................................	19	3	20	0.05	1	0	1	0	0
......................................................................................................................................................................................................................................TTGAACAGCAAGTAAACCTG......................................	20	3	20	0.05	1	0	0	0	1
.........................................................................................................................................................................................AATTGCGGAGGGAGGTCAA....................................................................................	19	3	20	0.05	1	1	0	0	0

GACTCCGTTCGTTTGTTTAATACGTTGACCGTGACCTCAGGTTGGCCTTACATTCATAAAGCTCTCAAATGTAACACACGTAACAAATGTAATTAAATGAAAACCACGAAAAAGGCACCTTAACGCCTGCCATGGCAACGCAGAGACTCCCTGGTCTAACGGGAGTGGTCTCTCCATGAATTCGTTTAACGCCTCCATGCATTTAAAGGCTGGGGTAGTTTATATATAAGAACTAGTCGTTCTTTTCGACTCAGCTAGATGGGTACAGGCAGACGGACAGGCAGCGTC *****************************************************..(((((((..((((....((((((......((((((((((.........)))))...)))))))))))...)))).)))))))(((.((........)))))....................************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	V117 male body	V119 head	M020 head
................................GACCTCAGGTTGGCCTTACATTCAT.......................................................................................................................................................................................................................................	25	0	1	39.00	39	38	1	0	0	0
.................................................................................................................................................................................GAATTCGTTTAACGCCTCCATGCAT......................................................................................	25	0	1	15.00	15	14	1	0	0	0
................TTAATACGTTGACCGTGACCTCAGGT......................................................................................................................................................................................................................................................	26	0	1	10.00	10	9	1	0	0	0
........................................................................................................................................................GGTCTAACGGGAGTGGTCTCTCCAT...............................................................................................................	25	0	1	7.00	7	7	0	0	0	0
....................................................................................................................ACCTTAACGCCTGCCATGGCAACGCA..................................................................................................................................................	26	0	2	6.50	13	13	0	0	0	0
............TTGTTTAATACGTTGACCGTGACCT...........................................................................................................................................................................................................................................................	25	0	1	6.00	6	4	2	0	0	0
...............................................................................................................................TGCCATGGCAACGCAGAGACTCCCT........................................................................................................................................	25	0	1	5.00	5	1	4	0	0	0
..............................................................................................................................................................................................................................................GTTCTTTTCGACTCAGCTAGATGGGT........................	26	0	1	5.00	5	2	3	0	0	0
...................................................................................................................................................TCCCTGGTCTAACGGGAGTGGTCTCT...................................................................................................................	26	0	2	4.50	9	7	1	0	1	0
......................................................................................................................................................................................................................................................................GTACAGGCAGACGGACAGGCAGCGT.	25	0	1	4.00	4	4	0	0	0	0
..............................................................................................................................CTGCCATGGCAACGCAGAGACTCCCT........................................................................................................................................	26	0	1	4.00	4	3	1	0	0	0
..................................................................................................................GCACCTTAACGCCTGCCATGGCAACGCA..................................................................................................................................................	28	0	2	3.50	7	7	0	0	0	0
...........................................GGCCTTACATTCATAAAGCTCTCAAATGT........................................................................................................................................................................................................................	29	0	1	3.00	3	3	0	0	0	0
.....................................................................................................................................GGCAACGCAGAGACTCCCTGGTCTAA.................................................................................................................................	26	0	1	3.00	3	3	0	0	0	0
.................................................ACATTCATAAAGCTCTCAAATGTAACAC...................................................................................................................................................................................................................	28	0	1	3.00	3	1	0	0	0	2
..................................................................................................................................................................................................CCATGCATTTAAAGGCTGGGGTAGT.....................................................................	25	0	1	3.00	3	1	1	0	1	0
.......................GTTGACCGTGACCTCAGGTTGGCCTT...............................................................................................................................................................................................................................................	26	0	1	3.00	3	2	1	0	0	0
......................................................................................................................................................................................................................................................CGACTCAGCTAGATGGGTACAGGCAG................	26	0	1	3.00	3	2	0	0	0	1
.................................................................................................................................................................................GAATTCGTTTAACGCCTCCATGCATTT....................................................................................	27	0	1	3.00	3	3	0	0	0	0
.................................................................................................................................................................................GAATTCGTTTAACGCCTCCATGCATT.....................................................................................	26	0	1	3.00	3	3	0	0	0	0
.....................................CAGGTTGGCCTTACATTCATAAAGCTCT...............................................................................................................................................................................................................................	28	0	1	3.00	3	3	0	0	0	0
..............................GTGACCTCAGGTTGGCCTTACATTCAT.......................................................................................................................................................................................................................................	27	0	1	3.00	3	3	0	0	0	0
..........................................TGGCCTTACATTCATAAAGCTCTCAAAT..........................................................................................................................................................................................................................	28	0	1	3.00	3	3	0	0	0	0
...........................................................................................................................................................................................................................................................................GGCAGACGGACAGGCAGCGT.	20	0	1	2.00	2	1	1	0	0	0
......................................AGGTTGGCCTTACATTCAT.......................................................................................................................................................................................................................................	19	0	1	2.00	2	1	1	0	0	0
...............................................................................................................................................................CGGGAGTGGTCTCTCCATGAATTCGT.......................................................................................................	26	0	1	2.00	2	2	0	0	0	0
.....................ACGTTGACCGTGACCTCAGGTTGGCCTT...............................................................................................................................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0
..................................................................................................................GCACCTTAACGCCTGCCATGGCAACGC...................................................................................................................................................	27	0	2	2.00	4	4	0	0	0	0
................................................................................................................................................................GGGAGTGGTCTCTCCATGAATTCGT.......................................................................................................	25	0	1	2.00	2	2	0	0	0	0
.....................................................TCATAAAGCTCTCAAATGTAACACACGT...............................................................................................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0
.....................................................................................................................................GGCAACGCAGAGACTCCCTGGTCTA..................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0
..................................................................................................................................................................................................CCATGCATTTAAAGGCTGGGGTAGTT....................................................................	26	0	1	2.00	2	0	1	0	1	0
.............................................................................................TAAATGAAAACCACGAAAAAGGCACCT........................................................................................................................................................................	27	0	1	2.00	2	2	0	0	0	0
................................GACCTCAGGTTGGCCTTACATTCA........................................................................................................................................................................................................................................	24	0	1	2.00	2	2	0	0	0	0
.............................................................................................TAAATGAAAACCACGAAAAAGGCACCTT.......................................................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0
...........................................GGCCTTACATTCATAAAGCTCTCAAAT..........................................................................................................................................................................................................................	27	0	1	2.00	2	2	0	0	0	0
..........................................................................................................................................................................................................TTAAAGGCTGGGGTAGTTTATATAT.............................................................	25	0	1	2.00	2	0	1	1	0	0
......................................................................................................................................................................GGTCTCTCCATGAATTCGTTTAACGC................................................................................................	26	0	1	2.00	2	2	0	0	0	0
......................................................................................................................................................................................................GCATTTAAAGGCTGGGGTAGTTTATAT...............................................................	27	0	1	2.00	2	0	1	1	0	0
............................CCGTGACCTCAGGTTGGCCTTACAT...........................................................................................................................................................................................................................................	25	0	1	2.00	2	2	0	0	0	0
.....................................................................................................................................GGCAACGCAGAGACTCCCTGGTCTAAC................................................................................................................................	27	0	1	2.00	2	2	0	0	0	0
...................................................................................................................CACCTTAACGCCTGCCATGGCAACGCA..................................................................................................................................................	27	0	2	2.00	4	4	0	0	0	0
...............................................................................................................................................................................................................................................TTCTTTTCGACTCAGCTAGATGGGT........................	25	0	1	2.00	2	2	0	0	0	0
......................................................................................................................................................................................................GCATTTAAAGGCTGGGGTAGTTTAT.................................................................	25	0	1	2.00	2	0	1	1	0	0
....................................................................................................................................................................................................................................................................GGGTACAGGCAGACGGACAGGCAGC...	25	0	1	2.00	2	2	0	0	0	0
....................................................................................................................................................CCCTGGTCTAACGGGAGTGGTCTCT...................................................................................................................	25	0	2	1.00	2	2	0	0	0	0
.............TGTTTAATACGTTGACCGTGACCT...........................................................................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0
...................................................................................................................................ATGGCAACGCAGAGACTCCCTGGTCTA..................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................................................................AGATGGGTACAGGCAGACGGACAG........	24	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................................................TCTTTTCGACTCAGCTAGATGGGTACAG....................	28	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................CTCTCCATGAATTCGTTTAACGCC...............................................................................................	24	0	1	1.00	1	1	0	0	0	0
......................................AGGTTGGCCTTACATTCATAAAGCTCT...............................................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................TCTCTCCATGAATTCGTTTAACGC................................................................................................	24	0	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................GGAGTGGTCTCTCCATGAATTCGT.......................................................................................................	24	0	1	1.00	1	0	1	0	0	0
....................................................TTCATAAAGCTCTCAAATGTAACACACGT...............................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0
......................................................................GTAACACACGTAACAAATGTAATTAAAT..............................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
..............................................................................................................................CTGCCATGGCAACGCAGAGACTCCC.........................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................ACTCAGCTAGATGGGTACAGGCAGA...............	25	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................TCGTTTAACGCCTCCATGCATTTA...................................................................................	24	0	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................................AGGCTGGGGTAGTTTATATATAAGA.........................................................	25	0	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................................AGCTAGATGGGTACAGGCAGACGG............	24	0	1	1.00	1	0	1	0	0	0
.....................................................................................................................CCTTAACGCCTGCCATGGCAACGCA..................................................................................................................................................	25	0	2	1.00	2	2	0	0	0	0
...........................................................................................................................................................................................................................................TTCGTTCTTTTCGACTCAGCTAGAT............................	25	1	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................................TGGGGTAGTTTATATATAAGAACT......................................................	24	0	1	1.00	1	1	0	0	0	0
........TCGTTTGTTTAATACGTTGACCGT................................................................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................TCGTTTAACGCCTCCATGCATTT....................................................................................	23	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................................GGGAGTGGTCTCTCCATGAATTC.........................................................................................................	23	0	1	1.00	1	1	0	0	0	0
..........GTTTGTTTAATACGTTGACCGTGACCT...........................................................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
............................................GCCTTACATTCATAAAGCTCTCAAATGT........................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................GATGGGTACAGGCAGACGGACAGGCA.....	26	0	1	1.00	1	1	0	0	0	0
......................CGTTGACCGTGACCTCAGGTTGGCCTT...............................................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
....................................................................CTGTAACACACGTAACAAATGTAAT...................................................................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0
..........................GACCGTGACCTCAGGTTGGCCTTAC.............................................................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................CTCAGCTAGATGGGTACAGGCAGACGG............	27	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................TCTCCATGAATTCGTTTAACGCCTCCAT..........................................................................................	28	0	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................ACAGGCAGACGGACAGGCAGCGT.	23	0	1	1.00	1	1	0	0	0	0
................................GACCTCAGGTTGGCCTTACATTCATAAA....................................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
GACTCCGTTCGTTTGTTTAATACGT.......................................................................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
..................................................................................................................................CATGGCAACGCAGAGACTCCCTGGT.....................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0
.......................................GGTTGGCCTTACATTCATAAAGCTCT...............................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
.......................................GGTTGGCCTTACATTCATAAAGCTC................................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................GTCTAACGGGAGTGGTCTCTCCAT...............................................................................................................	24	0	1	1.00	1	0	1	0	0	0
.....................................................................................................................................GGCAACGCAGAGACTCCCTGGTCT...................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
...........................................................AGCTCTCAAATGTAACACACGTAATAAAT........................................................................................................................................................................................................	29	1	1	1.00	1	1	0	0	0	0
........................................................................................................................................................GGTCTAACGGGAGTGGTCTCTCCA................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
..............GTTTAATACGTTGACCGTGACCTCAGGTT.....................................................................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0
...........................................................................ACACGTAACAAATGTAATTAAAT..............................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
......................................................................................................ACCACGAAAAAGGCACCTTAACGCCTGC..............................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................................................................GTTCTTTTCGACTCAGCTAGATGGG.........................	25	0	1	1.00	1	1	0	0	0	0
.....................................................TCATAAAGCTCTGAAATGTAACAC...................................................................................................................................................................................................................	24	1	1	1.00	1	1	0	0	0	0
..........................................TGGCCTTACATTCATAAAGCTCTCAAA...........................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................TTAAAGGCTGGGGTAGTTT...................................................................	19	0	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................TAGTCGTTCTTTTCGACTCAGCTAG..............................	25	0	1	1.00	1	1	0	0	0	0
.................................................................................................................................CCATGGCAACGCAGAGACTCCCTGGT.....................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
.........................................................AAAGCTCTCAAATGTAACACACGT...............................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................TGAATTCGTTTAACGCCTCCATGCAT......................................................................................	26	0	1	1.00	1	0	1	0	0	0
.......................................................................................................................................CAACGCAGAGACTCCCTGGTCTAAC................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................GAATTCGTTTAACGCCTCCATGCA.......................................................................................	24	0	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................................................ATTCAGCTAGATGGGTACAGGCAGACG.............	27	1	1	1.00	1	1	0	0	0	0
................................................................................................................................GCCATGGCAACGCAGAGACTCCCT........................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
...................................................ATTCATAAAGCTCTCAAATGTAACAC...................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
...............................TGACCTCAGGTTGCCCTTACATTCAT.......................................................................................................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0
..................................................CATTCATAAAGCTCTCAAATGTAACAC...................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................CTAGATGGGTACAGGCAGACGG............	22	0	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................GCAGACGGACAGGCAGCGT.	19	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................TATTTAAAGGCTGGGGTAGTTTATAT...............................................................	26	1	1	1.00	1	0	1	0	0	0
.......TTCGTTTGTTTAATACGTTGACCGT................................................................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.......................................................ATAAAGCTCTCAAATGTAACACACG................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
................................GACCTCAGGTTGGCCTTACAT...........................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
...............................................................................................................................TGCCATGGCAACGCAGAGACTCCCTGGT.....................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
.........................TGACCGTGACCTCAGGTTGGCCT................................................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................CCATGAATTCGTTTAACGCCTCCATGCAT......................................................................................	29	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................GCTGGGGTAGTTTATATATAAGAACT......................................................	26	0	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................ATTCGTTTAACGCCTCCATGCATTT....................................................................................	25	0	1	1.00	1	1	0	0	0	0
................................GACCTCAAGTTGGCCTTACATTCAT.......................................................................................................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................CATTTAAAGGCTGGGGTAGTTTAT.................................................................	24	0	1	1.00	1	1	0	0	0	0
..................................................................................................GAAAACCACGAAAAAGGCACCTTAACGC..................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................TAAAGGCTGGGGTAGTTTATATAT.............................................................	24	0	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................CGACTCAGCTAGATGGGTACAGGC..................	24	0	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................GGTCTCTCCATGAATTCGTTTAACGCCT..............................................................................................	28	0	1	1.00	1	1	0	0	0	0
................TTAATACGTTGACCGGGACCTCAGGTT.....................................................................................................................................................................................................................................................	27	1	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................AGTCGTTCTTTTCGACTCAGCTAGAT............................	26	0	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................GAATTCGTTTAACGCCTCCATTCAT......................................................................................	25	1	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................TTCGTTTAACGCCTCCATGCATTTA...................................................................................	25	0	1	1.00	1	1	0	0	0	0
................................GACCTCAGGTTGGGCTTACATTCAT.......................................................................................................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................................GGCTGGGGTAGTTTATATATAAGA.........................................................	24	0	1	1.00	1	0	1	0	0	0
........................................................................................................................................................GGTCTAACGGGAGTGGTCT.....................................................................................................................	19	0	2	0.50	1	1	0	0	0	0
...................................................ATTCATAAAGCTCTCAAATGT........................................................................................................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0
.................................................................................................................................................................................................................................ATAAGAACTAGTCGTTCTTTTCGA.......................................	24	0	2	0.50	1	1	0	0	0	0
................................................................................................................................................GTTTCCCTGGTCTAACGGGAGTGGTCT.....................................................................................................................	27	2	2	0.50	1	1	0	0	0	0
....................................................................................................................................................CCCTGGTCTAACGGGAGTGGTC......................................................................................................................	22	0	2	0.50	1	1	0	0	0	0
..................................................................................................................................................TTCCCTGGTCTAACGGGAGTGGTCTCT...................................................................................................................	27	1	2	0.50	1	1	0	0	0	0
......................................................................................................................................................CTGGTCTAACGGGAGTGGTCTCT...................................................................................................................	23	0	2	0.50	1	1	0	0	0	0
....................................................................................................................ACCTTAACGCCTGCCATGGCAACGC...................................................................................................................................................	25	0	2	0.50	1	1	0	0	0	0
....................................................................................................................ACCTTAACGCCTGCCATGGCAACG....................................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
....................................................TTCATAAAGCTCTCAAATGTAACA....................................................................................................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
.................................................................................................................................................ACTCCCTGGTCTAACGGGAGTGGTC......................................................................................................................	25	0	2	0.50	1	1	0	0	0	0
.....................................................................................................................................................CCTGGTCTAACGGGAGTGGT.......................................................................................................................	20	0	2	0.50	1	1	0	0	0	0
....................................................................................................................................................ATCTGGTCTAACGGGAGTGGTCTCT...................................................................................................................	25	2	2	0.50	1	1	0	0	0	0
...................................................................................................................CACCTTAACGCCTGCCATGGCAACCCA..................................................................................................................................................	27	1	2	0.50	1	1	0	0	0	0
.................................................................................................................ATAACCTTAACGCCTGCCATGGCAACGCA..................................................................................................................................................	29	3	2	0.50	1	1	0	0	0	0
....................................................................................................................................................TCTTGGTCTAACGGGAGTGGTCTCT...................................................................................................................	25	2	2	0.50	1	0	1	0	0	0
.................................................................................................................GGCACCTTAACGCCTGCCATGGCAACGC...................................................................................................................................................	28	0	2	0.50	1	1	0	0	0	0
.................................................................................................................TGCACCTTAACGCCTGCCATGGCAACGCA..................................................................................................................................................	29	1	2	0.50	1	1	0	0	0	0
....................................................................................................................................................CCCTTGTCTAACGGGAGTGGTCTCT...................................................................................................................	25	1	2	0.50	1	1	0	0	0	0
..................................................................................................................................................TTCCCTGGTCTAACGGGAGTGGTCT.....................................................................................................................	25	1	2	0.50	1	1	0	0	0	0
....................................................................................................................................................CCCTGGTCTAACGGGAGTGGTCTC....................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
......................................................................................................................CTTAACGCCTGCCATGGCAACGCA..................................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
.....................................................................................................................................................CCTGGTCTAACGGGAGTGGTCT.....................................................................................................................	22	0	2	0.50	1	1	0	0	0	0
.....................................................................................................................................................CCTGGTCTAACGGGAGTGGTCTCT...................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
...................................................................................................................................................TCCCTGGTCTAACGGGAGTGGTCT.....................................................................................................................	24	0	2	0.50	1	0	1	0	0	0
.................................................ACATTCATAAAGCTCTCAAATGTAAC.....................................................................................................................................................................................................................	26	0	2	0.50	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................CTCAGCTAGATGGGTACAGGCAGA...............	24	0	2	0.50	1	1	0	0	0	0
.........................................................................................................................................................................................TTAACGCCTCCATGCATTTAAAGGC..............................................................................	25	0	3	0.33	1	1	0	0	0	0
........................................................................................................................................................................................................ATTTAAAGCGAGGGGTAGTTT...................................................................	21	3	6	0.17	1	0	0	1	0	0
........................................................................................................................................................................................................ATTTAAAGCCAGGGGTAG......................................................................	18	2	6	0.17	1	0	0	1	0	0
........................................................................................................................................................................................................ATTTAAAGCCAGGGGTAGTGT...................................................................	21	3	7	0.14	1	0	0	1	0	0
.................................................................................................TGAAAACAAGGAAAAAGGCA...........................................................................................................................................................................	20	2	7	0.14	1	0	0	1	0	0
.......................................................................................................................................................................................................................TAGTTTCCATATAAGAACTAGTCGTAC..............................................	27	3	8	0.13	1	0	1	0	0	0
........................................................................................................................................................................................................ATTTAAAGGGAGGGGTAGTG....................................................................	20	3	19	0.11	2	1	0	1	0	0
.........................................................................................................................................................................................................TTTAAAGCGAGGGGTAGTTT...................................................................	20	3	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................GAGGTGGCTCTCCATGAA............................................................................................................	18	3	20	0.05	1	0	0	1	0	0

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004943:5631035-5631322 -	dwi_3286	CTGAGGCAAGCAAACAAA---------------------------------TTATGC---------AACTGGCACTGGAGTCCAACCGGAA----------------------------------------T-GTAAGTATTTCGAGAGTTTACATTGTGTGC----------------------ATTGTTTA------------------------------------------------------------------CATTAA-------------------------------------------------------TTTACT------------------------TTTGG-----------------------------------------------------------------------------------------------------------TGCTTTTTCCGTGGAATTGCGGACGGTACCGTTGCGTCTCTGAGGGACCAGATTGCCCTCACC-------------------------------------AGAGAGGTACTTAAGCAAAT---TGCG----GAGGTACGTA---------------AATTTCCGACCCCATCAAA------------------------------------TATATATTCTTGATCAGCAAGAAAAGCTGAGTCGATCTACCCATGTCCGTCTGCCTGTCCGTCGCAG---
droVir3	scaffold_12736:488936-489145 +		TACAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAATTACGTTAGAATTATTGTTAGAATT--G------TTTT---TTCAAT---------GT-----------------------------------------TG-----CTTG-C------------------------G-------C---------------------------------------------------------------------------------------------------TCTTTTTTTTATACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTG---TCGT----GAAACGTGTGACGCATAGAAGGAGACATCTCCGACCCCATAAAGTA----------------------------------TATATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGCCTGTCCGTCTGTC-------
droMoj3	scaffold_6500:31117419-31117529 +		GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTATTTAACAGGCAGATGGAGGCGTGGCAGACCCCACAAAGTA----------------------------------TATATATTCTTGATCAGGGTGACGAGCTGAGTCGGTTTAGCTCTGTCCGTCTGCCCGTCCGTC-------
droGri2	scaffold_15203:623289-623400 -		AAATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATGTAACAGGCAGAAGAAAGCATCTCCGACCCCATAATGTA----------------------------------TATATATTCTTGATCAGGGTCAACAACCGAGGCGATATAGCCATGTCCGTCTGTCTGCCCG---------
dp5	XL_group3b:293412-293573 -		CCGTTT------------------------------------------------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGAGGGGT------------ACT-------------------------------------ATAGGGGTATATTCGATTTGTGCGGGAAATGGATGTGTGTAACACCCAGATGGAAGCGTTTCCGACCCCATAAGGTG----------------------------------TAAATATTCTTGATCAGCATCAATAGCCAAGTCGATAGAGCCATGTCTGTCTGTCTGCCCGT--------
droPer2	scaffold_5:2677808-2677925 -		CTAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------------------------------------------------------------------------------GACTTGTGTAACGTCCAGAAGGAAGCGTTTCCGACCCCATAAAGCA----------------------------------TATATATTCTTGATCAGCATCAAAAGCCGAGTCGATTGAGCCATGTCTGCCTGTCCCTCTGTC-------
droAna3	scaffold_9501:2331-2543 -		AATAGG-----------A------------------------------------------------------------------------A----------------------------------------T-TTAAGTATTG------TTT-----------------------ACTTTTTGAAATTATTTATGCCAT-----------------------------------------------------------------T---------AT-----------------------------------------TA-----CTTAAC----------------ATT-TTTTAT-------------------------------------------------------------------------------------------------------------TCTTTTTATACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTG---GTCA----AAAGTGAGCAACCCAGTGAAGGAGACATCGCCGACCCTATAAAGTA----------------------------------TATATATTCTTGATCAGGATCACCTCCTGAGTCGATATAAGCGTGTCCGTCTGTCCGTCTG---------
droBip1	scf7180000392683:582-817 +		TTTTGG-----------TATTT----------------------------------------------------TTGGTATTTTTTTGGTA----------------------------------------T-TTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTATTTTGTAAATTTTGGG-----------------------TTTTT---------------------------TTTGGTATTATTTTTTTTTTTTTGTTATTTTTATACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTG---TCCA----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTA----------------------------------TATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAACATGTCCGTCTGTCTGTCTGT--------
droKik1	scf7180000301513:12936-13157 +		TTTGGG-----------A------------------------------------------------------------------------A----------------------------------------G---------TTTATACATAT-------AT--GTACTT----------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTT-----------------------------TG-------G---------------------------------------------------------------------------------------------------TCTAATTTTTTTACCCTTGCA--GGGTAT---------------------------------------------------------------------------------TGTAATTTCA---GTCA----GAAGTTTGCGACGCAGAGAAGGGGACATTTCCGACCCTATAAAGTATACATATACATATATACATATATACATATATACATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCTTCTGTGCGTCTGTC-------
droFic1	scf7180000452562:29639-29738 +		ATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTGGAGGAGATACCTCAGACCCCATAAAGTA----------------------------------TATATATTCTTGATCAGCATCACGATCTGAATTGAAATACCTCTATACGTCTGCCCGTCTGTC-------
droEle1	scf7180000489965:12836-13099 +		CTCAATCAAAAAAACAAA---------------------------------TAAAAA---------AACAAAACCAGG----TCACCGGAA----------------------------------------TATTAAATATTA------TTA-----------------------TTATAGTGAAACGAAACA--------------------GT------------------------------------------------AT---------GT-----------------------------------------TG-----TTAG-CAATTGAAATTCACTTAAAA-CTTGGC-------------------------------------------------------------------------------------------------------------TCTTTTTATACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTA---GTCA----GAAGTTTGCAACGCAGTGAAGGAGTCATCTCCGACCCTTTAAAATA----------------------------------TATATATTCTTGATCAGCATCACTAGGAGAGTCGATTTAGCCATGCCCGTCTGTCCGTCCGT--------
droRho1	scf7180000764898:8935-9211 +		AAAAAA-----------ATTTTTCTTTCATTGCGTTTGGACAATTTCAATGTTTTGCACTTGAAAAAACATTTCCG------------GAAAAAATATTTTGCACTTTAATTTTTTCCACTTTAGCTGGAAATTTATTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------T---------------------------------------------------------------------------------------------------TGTTGTTTTTATACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTG---GTCA----GCAGTTTGTAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTA----------------------------------TATATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTTTCAA---
droBia1	scf7180000302472:43734-43945 +		GAAAT--------------------------------------------------------------------------------------------------------------------------------TCAGTTATTTCACACGTTT-------TC--ACACTTTTTACAA---------ATTATTTA-------------------------------------------------------------------------------------------------------------------------CAGTATTTCA-----------------------T-ATTTAAA-------------------------------------------------------------------------------------------------------------CGTTTTTCTACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------AATGATTTCA---ATCA----GAAGTTTGTAACGCAGTGAAGGCGACGTTTCCGACCCCATAAAGTA----------------------------------TATATATTCTTGATCAGCGTAACAAGACGAGTCGATCCAGCCATGTCCTTCCGTTTCTACG---------
droTak1	scf7180000415809:1054184-1054453 +		ATAAGA-----------GATCT------------------AAGTTAAAATATTTTGCACTTGAAAAA-----------TATTTTTTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-TTTTAT----TT-TTTTTATACATTAACTATTTAA-----------------------TTTAT---------------------------TTTGCAAATGGATT---------GCATTTTCCGTGGT----------------------------------------------------------------TATACCCGTTACTCGTAGAGTAAAAGGGTATATTAGATTCG---TGCA----AAAGTATGTAACAAGTAGAAGGAAGCGTTTCCGACCCTATAAACTA----------------------------------TATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTC-------
droEug1	scf7180000409788:7033-7347 +		TAAATT------------------------------------------------GG----------AACTAG-------------------------------------------------------------------------------------------------------------------TATTTGTGCCATTTATTTGTTCAAAAAGAAATTACATGGAAATTTTCGTTTGGGCGTTGTGCGTTTTTTTTAAATAAAAGTCGTGTTTTTGCTTTTTTTAATTTTTGTGTAATTGTGTTTATCGGCTCGGTGGTCCG-----------------------T-ATTTATCCGTT--T-----T---------------GACA------TTGCGCCTA----------CTAAGGTACGATTGCC---------------------------------------------------------------------------------------ACACAATCCACT--GGGCAGCTTTTTATACCCGTTACTC----------------------------------------------------GTTGA-----------GTAACCCTATAAAGTA----------------------------------TATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTC-------
dm3	chr2RHet:2916251-2916379 +		GAGGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---------------------------------------------------------------------------------ACTATATTCG---TTGG----AATGTATGAAGCAGGCAGAAGAAAGAGTTATCGACCACATAAAGTA----------------------------------AATATATTCTTGATCAGAATTAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTA-----------
droSim2	2r:21587192-21587321 +		CCTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTGAGGAAACTTCTTGCACTTCC--------------------------------------------------------------------------------CACAGCGAAGTAAA---------TGATATAAAAT---------------------------TCTTTATATATATATTCTTGATCGGGATCAAGAGCCGAGACGATCTGGACGTGTCAGTCCGTATGTCCGTA-------
droSec2	scaffold_10556:852-976 +		ACTAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------AC-----------TAGA----AAAGTATTTAACTGGCAGAAGGAAGCGTTTCCGACTGTATAGAGTA----------------------------------TATATAATCTTGATCAGGATCAATAGCCCAGTCGATCTAGCCATGTCCGTCTGTCCATCTTTC-------
droYak3	v2_chr2h_random_004:1130274-1130514 -		TGCTTA----------------------------------------------------------------------------------------------------------------------------------GCTTGTG------TTA-----------------------A---------CTTATATA-------------------------------------------------------------------------------------------------------------------------CAGTATTCCA-----------------------C-GT------------GTTGAAGATGGCGGAAAAAGAGACGGTGCAGCTGCGGCTATCACGGCTCCCTAAG------TAGCCAGCCAGTACGCTGCCGATATA---------------TTTTTTTATACCCGTT----------------------------------------------------------------------ACTC-----------------------------------------------------GGGTAGGAAGCGTTTCTGACCATATAAAGTA------------------------------CATATATATATTCTTAATCAGGATCGATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGACAAAG---
droEre2	scaffold_4845:784598-784802 +		GTTGAC-----------A------------------------------------------------------------------------T----------------------------------------T-------------------------GTATGT----------------------CTCGTTTG------------------------------------------------------------------TATTAA-------------------------------------------------------TCTGC-----------------------------T-------G---------------------------------------------------------------------------------------------------TGTGATGCTGCGATGCTTG-----------------------ATGTGC------------ACAAATAGGATCAGC----------------------------------TGTTGGCGTTC---ATGA----AAAGTATGTAACAGGTAGAATGAAGCGTTTCCGACCATATAAAGTA------------------------------------TATATTCTTGATCAGGATCTATAGCCGAGTCGATCTGTCTCTGTCCGTGTGTACGTCTGTTTAAACAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

CTGAGGCAAGCAAACAAA---------------------------------TTATGC---------AACTGGCACTGGAGTCCAACCGGAA----------------------------------------T-GTAAGTATTTCGAGAGTTTACATTGTGTGC----------------------ATTGTTTA------------------------------------------------------------------CATTAA-------------------------------------------------------TTTACT------------------------TTTGG-----------------------------------------------------------------------------------------------------------TGCTTTTTCCGTGGAATTGCGGACGGTACCGTTGCGTCTCTGAGGGACCAGATTGCCCTCACC-------------------------------------AGAGAGGTACTTAAGCAAAT---TGCG----GAGGTACGTA---------------AATTTCCGACCCCATCAAA------------------------------------TATATATTCTTGATCAGCAAGAAAAGCTGAGTCGATCTACCCATGTCCGTCTGCCTGTCCGTCGCAG---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGTGGAATTGCGGACGGTA.............................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCCATCAAA------------------------------------TATATATTCTTG..........................................................	24	1	1.00	1	0	1	0	0	0
.................................................................................................................................................AGAGTTTACATTGTGTGC----------------------ATTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTTGCGTCTCTGAGGGACCAG......................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...............................................................................................................................................CGAGAGTTTACATTGTGTGC----------------------ATTGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGTTGCGTCTCTGAGGGACCAG......................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
...............AAA---------------------------------TTATGC---------AACTGGCACTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTTGCGTCTCTGAGGGAC.........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAT---TGCG----GAGGTACGTA---------------AATTTCC......................................................................................................................	26	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTACCCATGTCCGTCTGCC...............	22	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCTCTGAGGGACCAGATTG..................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTACTTAAGCAAAT---TGCG----GA....................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---------------AATTTCCGACCCCATCAAA------------------------------------TAT...................................................................	24	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GG-----------------------------------------------------------------------------------------------------------TGCTTTTTCCGTGGAATTGCG....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGTGGAATTGCGGACGGTACCG..........................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTTGCGTCTCTGAGGGACCA.......................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
......................................................................................................................................................TTACATTGTGTGC----------------------ATTGTTTA------------------------------------------------------------------CATTAA-------------------------------------------------------T......................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.....................................................................................CCGGAA----------------------------------------T-GTAAGTATTTCGAGAGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACC-------------------------------------AGAGAGGTACTTAAGCAAAT---..............................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................ATTGTTTA------------------------------------------------------------------CATTAA-------------------------------------------------------TTTACT------------------------TTTG.....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTACCCATGTCCGTCTGCCT..............	23	1	1.00	1	0	1	0	0	0
.........................................................................................AA----------------------------------------T-GTAAGTATTTCGAGAGTTTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.67	2	0	2	0	0	0
.........................................................................................AA----------------------------------------T-GTAAGTATTTCGAGAGTTTACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0

droVir3

TACAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAATTACGTTAGAATTATTGTTAGAATT--G------TTTT---TTCAAT---------GT-----------------------------------------TG-----CTTG-C------------------------G-------C---------------------------------------------------------------------------------------------------TCTTTTTTTTATACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTG---TCGT----GAAACGTGTGACGCATAGAAGGAGACATCTCCGACCCCATAAAGTA----------------------------------TATATATTCTTAATCAGCATCAACAGCCGAGTCGATATAGCCATGTCCGCCTGTCCGTCTGTC-------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAGCCG.........................................	27	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAG............................................	24	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACAG............................................	23	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGATA.................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAGCATCAACAGCCGAGTCGATA.................................	27	20	0.15	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTG---TCG...........................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAACAGCCGAGTCGA...................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAGC...........................................	25	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACA.............................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTAATCAGCATCAACAGCC..........................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCATCAACAGCCGAGTCGATA.................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGAAGGAGACATCTCCGACCC.................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTAATCAGCATCAACAGCCGAG.......................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTG---TCGT----G.....................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGCCGAGTCGATATAGCC............................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----------------------------------TATATATTCTTAATCAGCATCAAC..............................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATATAGCCATGTCCG.....................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAACAGCCGAGTCG....................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCCGAGTCGATATAGCCATG.........................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGCCGAGTCGATATAGCCATG.........................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGTA----------------------------------TATATATTCTTAATCAGC....................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAAC..............................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTAATCAGCATCAACAGCC..........................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATATAGCCATGTC.......................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAACAGCCG.........................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAA...............................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAGCCGAGTCGATATAGCCATGT........................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCGA...................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAACAGCCGAGTCGATATAGC.............................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAACAGCCGAGTCGA...................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTAATCAGCATCAACAGCCG.........................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTAATCAGCATCAACAGCCGAG.......................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAACAGCCGAGTCGATATA...............................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTATTTAACAGGCAGATGGAGGCGTGGCAGACCCCACAAAGTA----------------------------------TATATATTCTTGATCAGGGTGACGAGCTGAGTCGGTTTAGCTCTGTCCGTCTGCCCGTCCGTC-------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGAGGCGTGGCAGACCCCAC..............................................................................................................	24	9	0.11	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGGGTGAC...............................................	22	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGGTGA................................................	22	20	0.05	1	1	0	0	0	0	0

droGri2

AAATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATGTAACAGGCAGAAGAAAGCATCTCCGACCCCATAATGTA----------------------------------TATATATTCTTGATCAGGGTCAACAACCGAGGCGATATAGCCATGTCCGTCTGTCTGCCCG---------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

CCGTTT------------------------------------------------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGAGGGGT------------ACT-------------------------------------ATAGGGGTATATTCGATTTGTGCGGGAAATGGATGTGTGTAACACCCAGATGGAAGCGTTTCCGACCCCATAAGGTG----------------------------------TAAATATTCTTGATCAGCATCAATAGCCAAGTCGATAGAGCCATGTCTGTCTGTCTGCCCGT--------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTCGA...................................	26	20	6.75	135	0	108	4	0	0	0	0	22	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTCGAT..................................	27	20	3.30	66	0	50	3	0	0	0	0	10	3	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTC.....................................	24	20	3.10	62	0	46	13	0	1	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAG.......................................	22	20	2.80	56	0	49	0	0	0	0	0	7	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGC...........................................	24	20	2.60	52	0	52	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGT......................................	23	20	2.55	51	0	46	5	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGGGAAATGGATGTGTG..............................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTCGATA.................................	28	6	1.33	8	0	6	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTCG....................................	25	20	1.10	22	0	0	0	0	4	0	0	17	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCGATAGAGCCATGTCT......................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGATGGAAGCGTTTCCG.....................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAGATGGAAGCGTTTCC......................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCAAGTCG....................................	24	20	0.50	10	0	10	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCAAGTCGATAGAGCC............................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCAAGTCG....................................	26	20	0.15	3	0	2	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCAAGTC.....................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCATGTCTGTCTGTCTG.............	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCAAGTCGATA.................................	24	8	0.13	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTTCCGACCCCATAAGG..........................................................................................................	22	8	0.13	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCAAG.......................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCAAGTCGA...................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAAGTCGAA..................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCCAA........................................	25	20	0.10	2	0	0	0	0	0	0	0	2	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCAAG.......................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCAA........................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCAAGTCG....................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGAGCCATGTCTGTCTG.................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCCAA........................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCAAGT......................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCA.........................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCAAGTCGAT..................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGCCA.........................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCAAGTCG....................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

CTAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------------------------------------------------------------------------------------------------GACTTGTGTAACGTCCAGAAGGAAGCGTTTCCGACCCCATAAAGCA----------------------------------TATATATTCTTGATCAGCATCAAAAGCCGAGTCGATTGAGCCATGTCTGCCTGTCCCTCTGTC-------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAAAAGCCGAGT......................................	25	20	0.20	4	0	4	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAAAAGCCGAGTC.....................................	24	20	0.15	3	0	3	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAAAAGCCGAGTCG....................................	27	20	0.10	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACCCCATAAAGCA----------------------------------TA....................................................................	21	17	0.06	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGCCTGTCC..............	20	18	0.06	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCGTTTCCGACCCCATA.............................................................................................................	24	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAAAAGCCGAGA......................................	23	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAAAAGCCGAGTCGA...................................	28	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAAAAGCCGAGTC.....................................	26	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA----------------------------------TATATATTCTTGATCAGC....................................................	21	20	0.05	1	0	1	0	0	0	0

droAna3

AATAGG-----------A------------------------------------------------------------------------A----------------------------------------T-TTAAGTATTG------TTT-----------------------ACTTTTTGAAATTATTTATGCCAT-----------------------------------------------------------------T---------AT-----------------------------------------TA-----CTTAAC----------------ATT-TTTTAT-------------------------------------------------------------------------------------------------------------TCTTTTTATACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTG---GTCA----AAAGTGAGCAACCCAGTGAAGGAGACATCGCCGACCCTATAAAGTA----------------------------------TATATATTCTTGATCAGGATCACCTCCTGAGTCGATATAAGCGTGTCCGTCTGTCCGTCTG---------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAT---------------------------------------------------------------------------------TATAATTTTG---GTCA----AAAGT.................................................................................................................................................	24	20	0.45	9	0	9	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTCCGTCTGTCCGTCTG---------	22	8	0.25	2	1	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTG---GT............................................................................................................................................................	25	20	0.20	4	0	0	0	0	4	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTCGATATAAGCGTGTCCGTC...................	25	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTCCGTCTGTCCGTCT..........	21	8	0.13	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTCCGTCTGTCCGTCTG---------	21	9	0.11	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTCCGTCTGTCCGTC...........	20	10	0.10	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTCCGTCTGTCCGTC...........	19	12	0.08	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------TATAATTTTG---GTCA----AAAGTGAGC.............................................................................................................................................	24	14	0.07	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGTCCGTCTGTCCGTG...........	20	20	0.05	1	0	0	0	0	0	1

droBip1

TTTTGG-----------TATTT----------------------------------------------------TTGGTATTTTTTTGGTA----------------------------------------T-TTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTATTTTGTAAATTTTGGG-----------------------TTTTT---------------------------TTTGGTATTATTTTTTTTTTTTTGTTATTTTTATACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTG---TCCA----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTA----------------------------------TATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAACATGTCCGTCTGTCTGTCTGT--------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTTGGG-----------A------------------------------------------------------------------------A----------------------------------------G---------TTTATACATAT-------AT--GTACTT----------------------------------------------------------------------------------------------------------------------------------------------------TGTTCTT-----------------------------TG-------G---------------------------------------------------------------------------------------------------TCTAATTTTTTTACCCTTGCA--GGGTAT---------------------------------------------------------------------------------TGTAATTTCA---GTCA----GAAGTTTGCGACGCAGAGAAGGGGACATTTCCGACCCTATAAAGTATACATATACATATATACATATATACATATATACATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCTTCTGTGCGTCTGTC-------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTGGAGGAGATACCTCAGACCCCATAAAGTA----------------------------------TATATATTCTTGATCAGCATCACGATCTGAATTGAAATACCTCTATACGTCTGCCCGTCTGTC-------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTCAATCAAAAAAACAAA---------------------------------TAAAAA---------AACAAAACCAGG----TCACCGGAA----------------------------------------TATTAAATATTA------TTA-----------------------TTATAGTGAAACGAAACA--------------------GT------------------------------------------------AT---------GT-----------------------------------------TG-----TTAG-CAATTGAAATTCACTTAAAA-CTTGGC-------------------------------------------------------------------------------------------------------------TCTTTTTATACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTA---GTCA----GAAGTTTGCAACGCAGTGAAGGAGTCATCTCCGACCCTTTAAAATA----------------------------------TATATATTCTTGATCAGCATCACTAGGAGAGTCGATTTAGCCATGCCCGTCTGTCCGTCCGT--------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAAAA-----------ATTTTTCTTTCATTGCGTTTGGACAATTTCAATGTTTTGCACTTGAAAAAACATTTCCG------------GAAAAAATATTTTGCACTTTAATTTTTTCCACTTTAGCTGGAAATTTATTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------T---------------------------------------------------------------------------------------------------TGTTGTTTTTATACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------TATAATTTTG---GTCA----GCAGTTTGTAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTA----------------------------------TATATATTCTTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTTTCAA---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAAAT--------------------------------------------------------------------------------------------------------------------------------TCAGTTATTTCACACGTTT-------TC--ACACTTTTTACAA---------ATTATTTA-------------------------------------------------------------------------------------------------------------------------CAGTATTTCA-----------------------T-ATTTAAA-------------------------------------------------------------------------------------------------------------CGTTTTTCTACCCTTGCAGAGGGTAT---------------------------------------------------------------------------------AATGATTTCA---ATCA----GAAGTTTGTAACGCAGTGAAGGCGACGTTTCCGACCCCATAAAGTA----------------------------------TATATATTCTTGATCAGCGTAACAAGACGAGTCGATCCAGCCATGTCCTTCCGTTTCTACG---------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATAAGA-----------GATCT------------------AAGTTAAAATATTTTGCACTTGAAAAA-----------TATTTTTTTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT-TTTTAT----TT-TTTTTATACATTAACTATTTAA-----------------------TTTAT---------------------------TTTGCAAATGGATT---------GCATTTTCCGTGGT----------------------------------------------------------------TATACCCGTTACTCGTAGAGTAAAAGGGTATATTAGATTCG---TGCA----AAAGTATGTAACAAGTAGAAGGAAGCGTTTCCGACCCTATAAACTA----------------------------------TATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTC-------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TAAATT------------------------------------------------GG----------AACTAG-------------------------------------------------------------------------------------------------------------------TATTTGTGCCATTTATTTGTTCAAAAAGAAATTACATGGAAATTTTCGTTTGGGCGTTGTGCGTTTTTTTTAAATAAAAGTCGTGTTTTTGCTTTTTTTAATTTTTGTGTAATTGTGTTTATCGGCTCGGTGGTCCG-----------------------T-ATTTATCCGTT--T-----T---------------GACA------TTGCGCCTA----------CTAAGGTACGATTGCC---------------------------------------------------------------------------------------ACACAATCCACT--GGGCAGCTTTTTATACCCGTTACTC----------------------------------------------------GTTGA-----------GTAACCCTATAAAGTA----------------------------------TATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTC-------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GAGGGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---------------------------------------------------------------------------------ACTATATTCG---TTGG----AATGTATGAAGCAGGCAGAAGAAAGAGTTATCGACCACATAAAGTA----------------------------------AATATATTCTTGATCAGAATTAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTA-----------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---------------------------------------------------------------------------------ACTATATTCG---TTGG----AATGTAT...............................................................................................................................................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG----AATGTATGAAGCAGGCAGA...................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG----AATGTATGAAGCAGGCAGAA..................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGCCGAGTCGATCTAGCCATG.........................	25	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAGCCGAGTCGATCTAGCCATG.........................	26	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCA...........................	18	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATCTAGCCAT..........................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTAGCCATGTCCG.....................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGCCATGTCCGTCTC.................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATGTCCGTCTGTCCGT............	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCATGTCCGTC...................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CCTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTGAGGAAACTTCTTGCACTTCC--------------------------------------------------------------------------------CACAGCGAAGTAAA---------TGATATAAAAT---------------------------TCTTTATATATATATTCTTGATCGGGATCAAGAGCCGAGACGATCTGGACGTGTCAGTCCGTATGTCCGTA-------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATATATATTCTTGATCGGGA...................................................	24	1	8.00	8	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGACGATCTGGACGTGTCAGT....................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------TCTTTATATATATATTCTTGATCGGGA...................................................	28	1	3.00	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCGGGATCAAGAG............................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGCCGAGACGATCTGGACGTGT........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..TTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTGAGGAAACTTCTTGC.................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGACGATCTGGACGTGTCAGTC...................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCGAGACGATCTGGACGTGTCAG.....................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGATCAAGAGCCGAGACGATCTGGC.............................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGACGATCTGGACGTGTCAGTCC..................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGTCAGTCCGTATGTC...........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGACGATCTGGACGT..........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGATCAAGAGCCGAGACGATCTG...............................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGATCTGGACGTGT........................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTATATATATATTCTTGATCGGGA...................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCTTGCACTTCC--------------------------------------------------------------------------------CACAGCGAA..................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGCCGAGACGATCTGGACGT..........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGATCAAGAGCCGAGACGATCTGG..............................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATCAAGAGCCGAGACGATCTGGAA............................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGACGATCTGGACGTGTCAGT....................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGACGATCTGGACGTGTCAGTC...................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGAGCCGAGACGATCTGGACGTGT........................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCTTGCACTTCC--------------------------------------------------------------------------------CACAGCGA...................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCGGGATCA................................................	19	12	0.67	8	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATTCTTGATCGGGATC.................................................	24	3	0.67	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATATTCTTGATCGGGATCAA...............................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCGGGATCAA...............................................	24	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTCCGTATGTCCGG........	17	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCGGG....................................................	16	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

ACTAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------------------------------AC-----------TAGA----AAAGTATTTAACTGGCAGAAGGAAGCGTTTCCGACTGTATAGAGTA----------------------------------TATATAATCTTGATCAGGATCAATAGCCCAGTCGATCTAGCCATGTCCGTCTGTCCATCTTTC-------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCC..........................................	21	20	0.05	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCTG.................	21	20	0.05	1	1	0	0	0

droYak3

TGCTTA----------------------------------------------------------------------------------------------------------------------------------GCTTGTG------TTA-----------------------A---------CTTATATA-------------------------------------------------------------------------------------------------------------------------CAGTATTCCA-----------------------C-GT------------GTTGAAGATGGCGGAAAAAGAGACGGTGCAGCTGCGGCTATCACGGCTCCCTAAG------TAGCCAGCCAGTACGCTGCCGATATA---------------TTTTTTTATACCCGTT----------------------------------------------------------------------ACTC-----------------------------------------------------GGGTAGGAAGCGTTTCTGACCATATAAAGTA------------------------------CATATATATATTCTTAATCAGGATCGATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCCGTCCGACAAAG---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCCATGTCCGTCTGTCCGTCCGA........	27	7	1.57	11	0	0	0	0	0	0	0	0	0	0	11
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCATGTCCGTCTGTCCGTCCGAC.......	27	5	0.40	2	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................ATTCCA-----------------------C-GT------------GTTGAAGATGGC................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGTCCGA........	20	12	0.08	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAGCCGAGTCGATCTGGCCAT..........................	24	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGCCGAGTCGATCTGGCC............................	21	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTGGCCATGTCCGT....................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GTTGAC-----------A------------------------------------------------------------------------T----------------------------------------T-------------------------GTATGT----------------------CTCGTTTG------------------------------------------------------------------TATTAA-------------------------------------------------------TCTGC-----------------------------T-------G---------------------------------------------------------------------------------------------------TGTGATGCTGCGATGCTTG-----------------------ATGTGC------------ACAAATAGGATCAGC----------------------------------TGTTGGCGTTC---ATGA----AAAGTATGTAACAGGTAGAATGAAGCGTTTCCGACCATATAAAGTA------------------------------------TATATTCTTGATCAGGATCTATAGCCGAGTCGATCTGTCTCTGTCCGTGTGTACGTCTGTTTAAACAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dwi_3286

scf2_1100000004943:5631085-5631272 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-32.3	-32.0	-31.7