ID:

dwi_309

 Coordinate:

scf2_1100000004382:118541-118735 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.3 -3.2

Flybase annnotation

exon [dwil_GLEANR_10890:7]; CDS [Dwil\GK10684-cds]; intron [Dwil\GK10684-in]; CDS [Dwil\GK10684-cds]; exon [dwil_GLEANR_10890:6]; intron [Dwil\GK10684-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------########################--------------------------
AATCGTCTACATTAGGAGGTCGTGTGGTGATCAGTGCTGGACGTAAACAGGTTTGCTTTCAATCATCCAATTCAATGGTTCTTGAAATTTGTTATCCAGATGCTTATTGTGTTTGTGTGTTCATTTGTAATTGTTGTATCTATTGCTAATTTTGTATATTCCATACGTTCTGTCACCTTTGTACTGTCACTCGCTCGTCTGGCCAACAAACAAACCCTCACCAACAACAACAACCATTTACCCAGCAACTCAATGAGACACGGCGAAGAGTTAGTTACCTTATATGCTATATTAT
**************************************************************************************************(((((...........(((....)))...........)))))........*************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
 V119
head
 M020
head
.........CATTAGGAGGTCGTGTGGT........................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0
....................CGTGTGGTGATCAGTGCTGGAC............................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0
......................TGTGGTGATCAGTGCTGGACGT........................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
......CTACATTAGGAGGTCGTGTG............................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
...................TCGTGTGGTGATCAGTGCTGGA.............................................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................ATTGTTGTATCTATTGCTA................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0
.........................GGTGATCAGTGCTGGACGTAAACAG..................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0
..................................................................................................GATGCTTATTGTGTTTGTGT................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
......CTACATTAGGAGGTCGTGT.............................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0
.......................................................................................................................................................................................CTGTCACTCGCTCGTCTGGCC........................................................................................... 21 0 1 1.00 1 1 0 0 0 0
....................CGTGTGGTGAGGAGTGCGG................................................................................................................................................................................................................................................................ 19 3 17 0.53 9 7 2 0 0 0
..........ATTATGAGGTCGTGTGGC........................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0
..........................................................................................................................................................................................GCACTCGATCGTCTGGACAA......................................................................................... 20 3 6 0.33 2 0 0 0 0 2
....................CGTGTGGCGAGCAGTGCGG................................................................................................................................................................................................................................................................ 19 3 14 0.07 1 1 0 0 0 0
..........................................................................................................................................................................................GCACTCGATCGTCTGGACA.......................................................................................... 19 3 18 0.06 1 0 0 0 0 1
.................................................................................................AAATGCTTATTGTGTTTG.................................................................................................................................................................................... 18 1 20 0.05 1 0 0 1 0 0
..........................................................................................................................................................................................GCACTCGATCGTCTGGAC........................................................................................... 18 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TTAGCAGATGTAATCCTCCAGCACACCACTAGTCACGACCTGCATTTGTCCAAACGAAAGTTAGTAGGTTAAGTTACCAAGAACTTTAAACAATAGGTCTACGAATAACACAAACACACAAGTAAACATTAACAACATAGATAACGATTAAAACATATAAGGTATGCAAGACAGTGGAAACATGACAGTGAGCGAGCAGACCGGTTGTTTGTTTGGGAGTGGTTGTTGTTGTTGGTAAATGGGTCGTTGAGTTACTCTGTGCCGCTTCTCAATCAATGGAATATACGATATAATA
***************************************************************************************************************************************************(((((...........(((....)))...........)))))........************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020
head
 M045
female body
 V119
head
.................................................CCAAACGAAAGTCAGTAGATTAC............................................................................................................................................................................................................................... 23 3 5 0.40 2 2 0 0
.............................................................................................................................................................................................GAGCGAGAAGTCCGGTTG........................................................................................ 18 2 4 0.25 1 0 1 0
........................................................................................................................................................................................................................GAGTGGTGGTTGGTTTTGGTA.......................................................... 21 3 10 0.10 1 0 0 1
.........................................................................................................................................................................................................................................GGAAGATGGCTCGTTGAG............................................ 18 3 20 0.05 1 0 1 0
........................................................................................................................................................................................................CCGCTTGTCTGGTTGGGA............................................................................. 18 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004382:118491-118785 - dwi_309 A-AT--CGTCTACATTAGGAGGTCGTGTGGTGATCAGTGCTGGACGTAAACAGGTTTGCTTTC-AATCATCCAATTCAATGGT-----------------------------TCTTG-----------A-------AATT--------TGTT-ATCCAGATGCTTATTGTGTTTGTGTG----TTCATTTGTA-ATTGTTGTATCTATTGCTAATTTTGTATATTCCATACGTTCTG-------------T-CA---CC-------------------------TTTGTACTGTCA-C---TCGCTCGT------------------C---TGGC---CAACAAACAAACCCTCACCAACAACAAC-AACCATTTACCCAGCAACTCAATGAGACACGGCGAAGAGTTAGTTACC---------------------------TTAT----ATGC-TATA------------------TTAT
droVir3 scaffold_12875:17537841-17538069 + dvi_7552 A-CA--CAACCACACTTGGAGGACGCGTTGTGATTAGCGCCAATCGCAAACAGGTTTGTGAGC---------CGA----TCGC--------------------------------TG-----------G--------G-C--------CACCAAT--AACTGCTTAA-------A-TAG----GCTCGTTGTA-ATGTAATTTG-TATTGCTAC-TCTGTATT-TCCATACACTTGTT--G----TCCATC-AA------------------------------------CC----AC---TGTCC--ACTGTCCAATGTA------------------------CACA---TCGCCAACTGGGTC-A---------ACAGCAACTCAACGAGACGCGTCGAAGAGTTAGTT---------------------------------------------------------------------
droMoj3 scaffold_6496:10478225-10478517 - G-ATTGCCACCACTTTGGGCGGACGTGTTGTAATTAGTGCTAACCGAAAACAGGTGCGTGACTCAGCC-ACTAAA----TC---------------------------------ACGCACAGTCAACGA-------AGTT--------TGTG-------ATGCTT----------------------ATTGTA-ATAATTG----TATTGCTCA-TTTGTATT-TCCATACGCTTGTT--G----TCCATC-AACCACTGTTCACTGTACTATGCCCAATGTTCA-----TTGTC----------C--ACTGTCCACTGTCCACTGTA--ATGCT---------------------AAACTGGGCC-A---------ACAGCAACTCAATGAGACGCGTCGAAGAGTTAGTGTTT----------------------CTGTCTTATAGACAAGT-TTTA------------------CTAC
droGri2 scaffold_15245:17075756-17076050 + AGAGCACCACCACTCTGGGCGGTCGCGTTGTAATCAGCGCGAATCGTAAACAGGTTTGTCAGC-A----GCCAAA----TAAA-----------------------------CCGTC-----------T-------A----TTGTCA-CATCAATT--ACTGCTTGATG-G----CCTG----GCGCCTTGTA-ATATATATATATATTGCCAA-TCTGTATTT-TCATACGCTTGTC--C----ACAATT-CA---CTGTTCA--------------------------CTGTCCAC---TGTCC--ACTGTCCAATGTT------------------------CACA---TCGCCAACGGGATC-A---------ACAGCAACTCAATGAGACGCGTCGAAGAGTTAGTTTATTATGAATTTGTTCTATATGTTTTCGTA---------------TT------------------CCAT
dp5 3:12354200-12354427 - C-AA--CATCCACATTGGGCGGTCGCGTCGTTATAAGCGCCGGCCGAAAGCAGGTTTGTGATG-A----ACA--------TCAGCATATCATTTGATGAAAAGCTTATGTAAACGTC----------------------CATAGTGAATAT---------------------------------C--------CATCTTTG-AT-TATTGCTAA-TTCGTATTTTCCATTCGCTTGTC--G----TTCACTCCA------------------------------------CCAACAAC---GGCCCTGG------------------A--ACGTC------------------------------C-A---------ACAGGAGCTCAATGAGACCCGTCGAAGAGTTAGTTGCC------------------------------------------------------------------
droPer2 scaffold_44:536314-536541 - C-AA--CATCCACATTGGGCGGTCGCGTCGTTATAAGCGCCGGCCGAAAACAGGTTTGTGATG-A----ACA--------TCAGCATATCATTTGATGAAAAGCTTATGTAAACGTC----------------------CATAGTGAATAT---------------------------------C--------CATCTTTG-AT-TATTGCTAA-TTCGTATTTTCCATTCGCTTGTC--G----TTCACTCCA------------------------------------CCAACAAC---GGCCCTGG------------------A--ACGTC------------------------------C-A---------ACAGGAGCTCAATGAGACCCGTCGAAGAGTTAGTTGCC------------------------------------------------------------------
droAna3 scaffold_13266:16387549-16387801 - A-AG--CCTCTACGTTGGGCGGTCGTGTCGTAATCAGTGCTGGTCGGAAACAGGTTTGTGATT-G----CCCAGAGAGATG-----------------------------------------------AAGCCAGAAGCT--------CC-------ATA-CTTTATCAGT----CTTTCAAAACCATTTGTAAAATGTTGTCT-TATTGCTAA-TTTGTATTTTCCATACGCTTATG--G----TCCGTG-AA------------------------------------TCGCCATCG--TCGCTCGG------------------A--ATGCTCGCC---C----------------------CAA---------GCAGCAATTGAATGAGACACGTCGAAGAGTTAGTTACC---------------------------AAC-----ATAC--ATA------------------TTTT
droBip1 scf7180000395838:77251-77486 + A-AG--CCTCCACCTTGGGCGGCCGTGTTGTAATCAGTGCTGGTCGTAAACAGGTTTGTGGTT-A----CCCAAA----TG-----------------------------------------------GAGCCAGAATTT--------TA-------AAA-CATTTCCAGA----CTTT----TCCATTTGTAAATCTTTGTCT-TATTGCTAA-TTTGTATTTTCCATACGCTTATG--G----TCCGTG-AC------------------------------------CCGCCAACT--TCGCTCGG------------------A--ATACG------------------------------CAA---------ACAGCAATTGAATGAGACACGTCGAAGAGTTAGTTACC---------------------------AAC-----ATAT------------------------TTT
droKik1 scf7180000302385:953590-953872 + A-AA--CCTCCACCTTGGGCGGTCGTGTGGTCATCAGTGCTGGCCGGAAACAGGTTTGTTATC-GATTACCGAGG---A-TGGGTACATGACTGG--GACATGCTTTTGTACC-----AC-------------------------------------------------CA---CCACC----ACCATTTGTA-AACCTTGTCT-TATTGCTA--TTTGTATTTTTTATGCGCTATTTTTCCCCATTCGCT-CA------------------------------------TCGCCAACGTCTGCCTCGG------------------AACATGGC---CAACAAA----------------------T---------ACAGCAAATGAATGAAACACGTCGACGAGTTAGTTACC---------------------------AAA-----AAAC--TTCAATTTATTCTACTAACTAGAAT
droFic1 scf7180000453948:147867-148096 + A-AT--CGTCCACTTTAGGTGGTCGTGTCGTGATCAGTGCTGGCCGCAAACAGGTTTGTGATT-A----CCCAAA----TGCA-----------------------------GCACG-----------G-------AGCT--------CATGAATCAAACTGCTTTGTACA----TTAG----TCCACCTGTA-ACCGTTGTCT-TATTGCTA--TCTGTATTTTCCATACGCTTGTC--G----TTTGCT-CA------------------------------------CCACCAACG--TCCTTCGG------------------A--ATGTC------------------------------C-A---------ACAGCAAGGGAACGACACCCGTCGAAGAGTTAGTTAC-------------------------------------------------------------------
droEle1 scf7180000491347:225545-225776 + A-AT--CGTCCACATTGGGCGGCCGTGTTGTTATCAGTGCTGGCCGCAAACAGGTTTGTGGTT-A----CCCGAG----TGCA-----------------------------GCTTG-----------G-------AGCT--------TGTGAATCAAACCGCTT-GTACA---CTTTG----TCCATTTGTA-ATCGTTGTCTTTACTGCTA--TTTGTATTTTTCATACGCTTGTC--G----TTTGCT-CA------------------------------------CCGCCAACG--TCCCTCGG------------------A--ATGCC------------------------------C-C---------ACAGCAAGGGAAAGACACGCGTCGAAGAGTTAGTTACC------------------------------------------------------------------
droRho1 scf7180000779868:18828-19059 - A-AT--CGTCCACATTGGGCGGTCGTGTTGTGATCAGTGCTGGCCGCAAACAGGTTTGTTACT-A----CCCGAA----TCCA-----------------------------GCATG-----------G-------AGCT--------CAGTAATCAAACTGCTTTGTACA----CTTG----TCCATTTGTA-ATCGTTGTCTTTACTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCAACG--TCCTTCGG------------------A--ATGCC------------------------------C-A---------ACAGCAAGGGAAAGACACACGTCGAAGAGTTAGTTACC------------------------------------------------------------------
droBia1 scf7180000302292:2755788-2756018 - A-AT--CGTCGACCTTGGGCGGTCGTGTCGTGATCAGTGCTGGCCGGAAACAGGTTTGTGATT-A----CCCGAA----GGCG-----------------------------CCATG-----------G-------AACT--------TATAAATCGAACTGCTTTGTATA---CCTTG----TCCACATGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCAAC---TCCCTCGG------------------A--ATGCC------------------------------C-A---------ACAGCAAGGGAACGACACAAGACGAAGAGTTAGTTACC------------------------------------------------------------------
droTak1 scf7180000412807:169587-169818 + A-AT--CGTCCACTCTGGGCGGTCGTGTAGTGATCAGTGCTGGTCGCAAACAGGTTTGTGATT-A----CCCAAA---ATGCG-----------------------------GCGTG-----------G-------AGCT--------CATCAATCGAACTGCTTTGTACA---CTTTG----TCCATCTGTA-ATCTTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCGAA---TCCCTGGG------------------A--ATGCC------------------------------C-A---------ACAGCAGGGAAATGACACCCGACGAAGAGTTAGTTACC------------------------------------------------------------------
droEug1 scf7180000409672:5406139-5406373 + A-AT--CGTCTACTTTGGGCGGTCGTGTCGTGATCAGTGCTGGCCGCAAACAGGTTTGTGATT-GTTTACCCACA----TGCG-----------------------------ACATG-----------G-------AGCT--------AATGAATCGAATTGCTTTGTATA---CTTCG----TCCTCTTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTACATACGCTTGTC--G----TTCGCT-CA------------------------------------ACGCCAAC---TCCCTCGG------------------A--ATGCC------------------------------C-C---------TCAGCAAGGGAATGACACCCGTCGAAGAGTTAGTTATC------------------------------------------------------------------
dm3 chr2R:3390484-3390710 + A-AT--CCTCCACCTTGGGCGGCCGCGTCGTGATCAGTGCTGGCCGCAAACAGGTTTGTGTTT-G----ACCAGA----TTCT-----------------------------TCATG-----------G-------AC-C--------CAACAATCGTATTGCTC--CA-A---TTTCG----TCCAATTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCAAC---TCCCTCGG------------------A--TTGCC------------------------------C-A---------ACAGCAAGGGAATGACACACGTCGAAGAGTTAGTTACC------------------------------------------------------------------
droSim2 2r:4213730-4213958 + dsi_19982 A-AT--CCTCCACCTTAGGCGGCCGCGTCGTGATCAGTGCTGGCCGCAAACAGGTTTGTGATT-G----ACCAGA----TTCT-----------------------------TCATG-----------G--------GCC--------CAGCAATCGCATTGCTCTCCA-A---TTTCG----TCCATTTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCAAC---TCCCTCGG------------------A--TTGCC------------------------------C-A---------ACAGCAAGGGAATGACACACGTCGAAGAGTTAGTTACC------------------------------------------------------------------
droSec2 scaffold_1:1047651-1047895 + A-AT--CATCCACCTTAGGCGGCCGCGTCGTGATCAGTGCTGGCCGCAAACAGGTTTGTGATT-G----ACCAGA----TTCT-----------------------------TCATG-----------G--------GCC--------CAGCATTCAAATTGCTCTCCA-A---TTTCG----TCCATTTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCAAC---TCCCTCGG------------------A--TTGCC------------------------------C-A---------ACAGCAAGGGAATGACACACGTCGAAGAGTTAGTTACC---------------------------CTC-----TTATTTAAA------------------TTAT
droYak3 2L:16068502-16068729 + A-AT--CTTCAACCTTAGGAGGCCGCGTCGTCATCAGTGCTGGCCGCAAACAGGTTTGTGATC-G----CCCAGA----TTCT-----------------------------TCGCC-------------------------------CAG-AATCAATTTCCTTTCCA-A---TTGTG----TTCATTTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACAATTGTC--GCTTGTTCGCT-CA------------------------------------CCTCCAAC---TCCCTCGG------------------A--TGGCC------------------------------C-A---------ACAGCAAGGGAATGACACACGTCGAAGAGTTAGTTACC------------------------------------------------------------------
droEre2 scaffold_4929:19207761-19207990 - A-AT--CCTCCACCTTAGGCGGTCGCGTCGTGATCAGTGCTGGACGCAAACAGGTTTGTGATC-G----CCCAGC----TTCT-----------------------------TTATG-----------G-------ACCC--------AACAAATCGAGTTGCTTTCCA-A---TTTTG----TCCATTTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCACT-CA------------------------------------CCGCCAAC---TCCCTCGG------------------A--TTGCC------------------------------C-A---------ACAGCAAGGGAATGACACACGTCGAAGAGTTAGTTACC------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
A-AT--CGTCTACATTAGGAGGTCGTGTGGTGATCAGTGCTGGACGTAAACAGGTTTGCTTTC-AATCATCCAATTCAATGGT-----------------------------TCTTG-----------A-------AATT--------TGTT-ATCCAGATGCTTATTGTGTTTGTGTG----TTCATTTGTA-ATTGTTGTATCTATTGCTAATTTTGTATATTCCATACGTTCTG-------------T-CA---CC-------------------------TTTGTACTGTCA-C---TCGCTCGT------------------C---TGGC---CAACAAACAAACCCTCACCAACAACAAC-AACCATTTACCCAGCAACTCAATGAGACACGGCGAAGAGTTAGTTACC---------------------------TTAT----ATGC-TATA------------------TTATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............CATTAGGAGGTCGTGTGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000
.......................CGTGTGGTGATCAGTGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.........................TGTGGTGATCAGTGCTGGACGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.........CTACATTAGGAGGTCGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
......................TCGTGTGGTGATCAGTGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
..................................................................................................................................................................................................ATTGTTGTATCTATTGCTA............................................................................................................................................................................................................................................................................1911.00100010
............................GGTGATCAGTGCTGGACGTAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001
..............................................................................................................................................................GATGCTTATTGTGTTTGTGT...............................................................................................................................................................................................................................................................................................................2011.00100100
.........CTACATTAGGAGGTCGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..................................................................................................................................................................................................................................................................................................CTGTCA-C---TCGCTCGT------------------C---TGGC---C..............................................................................................................................................2111.00101000
droVir3
A-CA--CAACCACACTTGGAGGACGCGTTGTGATTAGCGCCAATCGCAAACAGGTTTGTGAGC---------CGA----TCGC--------------------------------TG-----------G--------G-C--------CACCAAT--AACTGCTTAA-------A-TAG----GCTCGTTGTA-ATGTAATTTG-TATTGCTAC-TCTGTATT-TCCATACACTTGTT--G----TCCATC-AA------------------------------------CC----AC---TGTCC--ACTGTCCAATGTA------------------------CACA---TCGCCAACTGGGTC-A---------ACAGCAACTCAACGAGACGCGTCGAAGAGTTAGTT---------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................ATGTA------------------------CACA---TCGCCA...........................................................................................................................1513.003000000000000000000000000000000000000000000000000000000000000003
................................ATTAGCGCCAATCGCAAACAGGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TAA-------A-TAG----GCTCGTTGTA-ATG............................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.......AACCACACTTGGAGGACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............ACTTGGAGGACGCGTTGTGATTAGCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AACGAGACGCGTCGAAGA............................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
...........ACACTTGGAGGACGCGTTGTGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...........ACACTTGGAGGACGCGTTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
....................GGACGCGTTGTGATTAGCGCCAATCGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AACGAGACGCGTCGAAGAGTG.........................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
...........ACACTTGGAGGACGCGTTGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AATGTA------------------------CACA---TCGCCAGT.........................................................................................................................1870.141000000000000000000000000000000000000000000000000000000000000001
droMoj3
G-ATTGCCACCACTTTGGGCGGACGTGTTGTAATTAGTGCTAACCGAAAACAGGTGCGTGACTCAGCC-ACTAAA----TC---------------------------------ACGCACAGTCAACGA-------AGTT--------TGTG-------ATGCTT----------------------ATTGTA-ATAATTG----TATTGCTCA-TTTGTATT-TCCATACGCTTGTT--G----TCCATC-AACCACTGTTCACTGTACTATGCCCAATGTTCA-----TTGTC----------C--ACTGTCCACTGTCCACTGTA--ATGCT---------------------AAACTGGGCC-A---------ACAGCAACTCAATGAGACGCGTCGAAGAGTTAGTGTTT----------------------CTGTCTTATAGACAAGT-TTTA------------------CTACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................ACGTGTTGTAATTAGTGCTAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.............................GTAATTAGTGCTAACCGAAAACAGGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
G-ATTGCCACCACTTTGGGCGGACGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGTTT----------------------CTGTCTTATAGAC...............................2311.001000010
droGri2
AGAGCACCACCACTCTGGGCGGTCGCGTTGTAATCAGCGCGAATCGTAAACAGGTTTGTCAGC-A----GCCAAA----TAAA-----------------------------CCGTC-----------T-------A----TTGTCA-CATCAATT--ACTGCTTGATG-G----CCTG----GCGCCTTGTA-ATATATATATATATTGCCAA-TCTGTATTT-TCATACGCTTGTC--C----ACAATT-CA---CTGTTCA--------------------------CTGTCCAC---TGTCC--ACTGTCCAATGTT------------------------CACA---TCGCCAACGGGATC-A---------ACAGCAACTCAATGAGACGCGTCGAAGAGTTAGTTTATTATGAATTTGTTCTATATGTTTTCGTA---------------TT------------------CCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
C-AA--CATCCACATTGGGCGGTCGCGTCGTTATAAGCGCCGGCCGAAAGCAGGTTTGTGATG-A----ACA--------TCAGCATATCATTTGATGAAAAGCTTATGTAAACGTC----------------------CATAGTGAATAT---------------------------------C--------CATCTTTG-AT-TATTGCTAA-TTCGTATTTTCCATTCGCTTGTC--G----TTCACTCCA------------------------------------CCAACAAC---GGCCCTGG------------------A--ACGTC------------------------------C-A---------ACAGGAGCTCAATGAGACCCGTCGAAGAGTTAGTTGCC------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................TGAATAT---------------------------------C--------CATCTTTG-AT-T...................................................................................................................................................................................................................................................................................1911.0010100000000
................................ATAAGCGCCGGCCGAAAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
C-AA--CATCCACATTGGGCGGTCGCGTCGTTATAAGCGCCGGCCGAAAACAGGTTTGTGATG-A----ACA--------TCAGCATATCATTTGATGAAAAGCTTATGTAAACGTC----------------------CATAGTGAATAT---------------------------------C--------CATCTTTG-AT-TATTGCTAA-TTCGTATTTTCCATTCGCTTGTC--G----TTCACTCCA------------------------------------CCAACAAC---GGCCCTGG------------------A--ACGTC------------------------------C-A---------ACAGGAGCTCAATGAGACCCGTCGAAGAGTTAGTTGCC------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................GTCGTTATAAGCGCCGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droAna3
A-AG--CCTCTACGTTGGGCGGTCGTGTCGTAATCAGTGCTGGTCGGAAACAGGTTTGTGATT-G----CCCAGAGAGATG-----------------------------------------------AAGCCAGAAGCT--------CC-------ATA-CTTTATCAGT----CTTTCAAAACCATTTGTAAAATGTTGTCT-TATTGCTAA-TTTGTATTTTCCATACGCTTATG--G----TCCGTG-AA------------------------------------TCGCCATCG--TCGCTCGG------------------A--ATGCTCGCC---C----------------------CAA---------GCAGCAATTGAATGAGACACGTCGAAGAGTTAGTTACC---------------------------AAC-----ATAC--ATA------------------TTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................CCAGAGAGATG-----------------------------------------------AAGCCAGAAGCT--------CC-------AT..................................................................................................................................................................................................................................................................................................................................2711.001000010
.........CTACGTTGGGCGGTCGTGTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..AG--CCTCTACGTTGGGCGGTCGTGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droBip1
A-AG--CCTCCACCTTGGGCGGCCGTGTTGTAATCAGTGCTGGTCGTAAACAGGTTTGTGGTT-A----CCCAAA----TG-----------------------------------------------GAGCCAGAATTT--------TA-------AAA-CATTTCCAGA----CTTT----TCCATTTGTAAATCTTTGTCT-TATTGCTAA-TTTGTATTTTCCATACGCTTATG--G----TCCGTG-AC------------------------------------CCGCCAACT--TCGCTCGG------------------A--ATACG------------------------------CAA---------ACAGCAATTGAATGAGACACGTCGAAGAGTTAGTTACC---------------------------AAC-----ATAT------------------------TTTSizeHit CountTotal NormTotal
No Reads
droKik1
A-AA--CCTCCACCTTGGGCGGTCGTGTGGTCATCAGTGCTGGCCGGAAACAGGTTTGTTATC-GATTACCGAGG---A-TGGGTACATGACTGG--GACATGCTTTTGTACC-----AC-------------------------------------------------CA---CCACC----ACCATTTGTA-AACCTTGTCT-TATTGCTA--TTTGTATTTTTTATGCGCTATTTTTCCCCATTCGCT-CA------------------------------------TCGCCAACGTCTGCCTCGG------------------AACATGGC---CAACAAA----------------------T---------ACAGCAAATGAATGAAACACGTCGACGAGTTAGTTACC---------------------------AAA-----AAAC--TTCAATTTATTCTACTAACTAGAATSizeHit CountTotal NormTotal
No Reads
droFic1
A-AT--CGTCCACTTTAGGTGGTCGTGTCGTGATCAGTGCTGGCCGCAAACAGGTTTGTGATT-A----CCCAAA----TGCA-----------------------------GCACG-----------G-------AGCT--------CATGAATCAAACTGCTTTGTACA----TTAG----TCCACCTGTA-ACCGTTGTCT-TATTGCTA--TCTGTATTTTCCATACGCTTGTC--G----TTTGCT-CA------------------------------------CCACCAACG--TCCTTCGG------------------A--ATGTC------------------------------C-A---------ACAGCAAGGGAACGACACCCGTCGAAGAGTTAGTTAC-------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
A-AT--CGTCCACATTGGGCGGCCGTGTTGTTATCAGTGCTGGCCGCAAACAGGTTTGTGGTT-A----CCCGAG----TGCA-----------------------------GCTTG-----------G-------AGCT--------TGTGAATCAAACCGCTT-GTACA---CTTTG----TCCATTTGTA-ATCGTTGTCTTTACTGCTA--TTTGTATTTTTCATACGCTTGTC--G----TTTGCT-CA------------------------------------CCGCCAACG--TCCCTCGG------------------A--ATGCC------------------------------C-C---------ACAGCAAGGGAAAGACACGCGTCGAAGAGTTAGTTACC------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
A-AT--CGTCCACATTGGGCGGTCGTGTTGTGATCAGTGCTGGCCGCAAACAGGTTTGTTACT-A----CCCGAA----TCCA-----------------------------GCATG-----------G-------AGCT--------CAGTAATCAAACTGCTTTGTACA----CTTG----TCCATTTGTA-ATCGTTGTCTTTACTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCAACG--TCCTTCGG------------------A--ATGCC------------------------------C-A---------ACAGCAAGGGAAAGACACACGTCGAAGAGTTAGTTACC------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
A-AT--CGTCGACCTTGGGCGGTCGTGTCGTGATCAGTGCTGGCCGGAAACAGGTTTGTGATT-A----CCCGAA----GGCG-----------------------------CCATG-----------G-------AACT--------TATAAATCGAACTGCTTTGTATA---CCTTG----TCCACATGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCAAC---TCCCTCGG------------------A--ATGCC------------------------------C-A---------ACAGCAAGGGAACGACACAAGACGAAGAGTTAGTTACC------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
A-AT--CGTCCACTCTGGGCGGTCGTGTAGTGATCAGTGCTGGTCGCAAACAGGTTTGTGATT-A----CCCAAA---ATGCG-----------------------------GCGTG-----------G-------AGCT--------CATCAATCGAACTGCTTTGTACA---CTTTG----TCCATCTGTA-ATCTTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCGAA---TCCCTGGG------------------A--ATGCC------------------------------C-A---------ACAGCAGGGAAATGACACCCGACGAAGAGTTAGTTACC------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
A-AT--CGTCTACTTTGGGCGGTCGTGTCGTGATCAGTGCTGGCCGCAAACAGGTTTGTGATT-GTTTACCCACA----TGCG-----------------------------ACATG-----------G-------AGCT--------AATGAATCGAATTGCTTTGTATA---CTTCG----TCCTCTTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTACATACGCTTGTC--G----TTCGCT-CA------------------------------------ACGCCAAC---TCCCTCGG------------------A--ATGCC------------------------------C-C---------TCAGCAAGGGAATGACACCCGTCGAAGAGTTAGTTATC------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
A-AT--CCTCCACCTTGGGCGGCCGCGTCGTGATCAGTGCTGGCCGCAAACAGGTTTGTGTTT-G----ACCAGA----TTCT-----------------------------TCATG-----------G-------AC-C--------CAACAATCGTATTGCTC--CA-A---TTTCG----TCCAATTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCAAC---TCCCTCGG------------------A--TTGCC------------------------------C-A---------ACAGCAAGGGAATGACACACGTCGAAGAGTTAGTTACC------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................TCGTGATCAGTGCTGGCCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GTCGTGATCAGTGCTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000
...................CGGCCGCGTCGTGATCAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TTGCC------------------------------C-A---------ACAGCAAGGGAATGACA.......................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ACACGTCGAAGAGTTAGTTACC------------------------------------------------------------------2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGCGTCGTGATCAGTGCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000
..........................GTCGTGATCAGTGCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......CTCCACCTTGGGCGGCCGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGCGTCGTGATCAGTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................GCGGCCGCGTCGTGATCAGTGCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...T--CCTCCACCTTGGGCGGCCGCGTCGTGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGCGTCGTGATCAGTGCTGGCCGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..............................TGATCAGTGCTGGCCGCAAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCCACCTTGGGCGGCCGCGTCGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................GTTTGTGTTT-G----ACCAGA----TTCT-----------------------------.................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CTTGGGCGGCCGCGTCGTGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CGTGATCAGTGCTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAAGGGAATGACACACGTC.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
....................GGCCGCGTCGTGATCAGTGCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AT--CCTCCACCTTGGGCGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCGTCGTGATCAGTGCTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTGGGCGGCCGCGTCGTGATCAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TTTCG----TCCAATTGTA-ATCGTT.........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........ACCTTGGGCGGCCGCGTCGTGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TTGTC--G----TTCGCT-CA------------------------------------CCGCCAAC---TCC.................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................ACAGCAAGGGAATGACACACG...................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...T--CCTCCACCTTGGGCGGCCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................A---------ACAGCAAGGGAATGACAC......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................................................................................................................................................CGCCAAC---TCCCTCGG------------------A--TTGCC------------------------------....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGCGTCGTGATCAGTGCTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................CCCTCGG------------------A--TTGCC------------------------------C-A---------ACAG....................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................G-------AC-C--------CAACAATCGTATTGCTT--..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAAGGGAATGACACACGT..................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAGGGAATGACACACGTCGAAGAGT..........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TGACACACGTCGAAGAGTG.........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ACCTTGGGCGGCCGCGTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCGTCGTGATCAGTGCTGGCCGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CCGCGTCGTGATCAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...T--CCTCCACCTTGGGCGGCCGCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......CCTCCACCTTGGGCGGCCGCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A-AT--CCTCCACCTTAGGCGGCCGCGTCGTGATCAGTGCTGGCCGCAAACAGGTTTGTGATT-G----ACCAGA----TTCT-----------------------------TCATG-----------G--------GCC--------CAGCAATCGCATTGCTCTCCA-A---TTTCG----TCCATTTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCAAC---TCCCTCGG------------------A--TTGCC------------------------------C-A---------ACAGCAAGGGAATGACACACGTCGAAGAGTTAGTTACC------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................GTCGTGATCAGTGCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1819.00905400000000000000
.......................CGCGTCGTGATCAGTGCTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00202000000000000000
..........................GTCGTGATCAGTGCTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
...T--CCTCCACCTTAGGCGGCCGCGTCGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000002000000000
.............................................................................................................................................................................................................................................................................................................TCCCTCGG------------------A--TTGCC------------------------------C-A---------ACAGA...................................................................................................2111.00100000000100000000
droSec2
A-AT--CATCCACCTTAGGCGGCCGCGTCGTGATCAGTGCTGGCCGCAAACAGGTTTGTGATT-G----ACCAGA----TTCT-----------------------------TCATG-----------G--------GCC--------CAGCATTCAAATTGCTCTCCA-A---TTTCG----TCCATTTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCGCT-CA------------------------------------CCGCCAAC---TCCCTCGG------------------A--TTGCC------------------------------C-A---------ACAGCAAGGGAATGACACACGTCGAAGAGTTAGTTACC---------------------------CTC-----TTATTTAAA------------------TTATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................GTCGTGATCAGTGCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
.........................CGTCGTGATCAGTGCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
droYak3
A-AT--CTTCAACCTTAGGAGGCCGCGTCGTCATCAGTGCTGGCCGCAAACAGGTTTGTGATC-G----CCCAGA----TTCT-----------------------------TCGCC-------------------------------CAG-AATCAATTTCCTTTCCA-A---TTGTG----TTCATTTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACAATTGTC--GCTTGTTCGCT-CA------------------------------------CCTCCAAC---TCCCTCGG------------------A--TGGCC------------------------------C-A---------ACAGCAAGGGAATGACACACGTCGAAGAGTTAGTTACC------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................GCGTCGTCATCAGTGCTGGCCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
....................GGCCGCGTCGTCATCAGTGCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GACACACGTCGAAGAGTGGT.......................................................................2020.50100000010000
droEre2
A-AT--CCTCCACCTTAGGCGGTCGCGTCGTGATCAGTGCTGGACGCAAACAGGTTTGTGATC-G----CCCAGC----TTCT-----------------------------TTATG-----------G-------ACCC--------AACAAATCGAGTTGCTTTCCA-A---TTTTG----TCCATTTGTA-ATCGTTGTCT-TATTGCTA--TTTGTATTTTCCATACGCTTGTC--G----TTCACT-CA------------------------------------CCGCCAAC---TCCCTCGG------------------A--TTGCC------------------------------C-A---------ACAGCAAGGGAATGACACACGTCGAAGAGTTAGTTACC------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................GCGGTCGCGTCGTGATCAGTGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.......................CGCGTCGTGATCAGTGCTGGACGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..AT--CCTCCACCTTAGGCGGTCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010

Generated: 05/17/2015 at 10:42 PM