ID:

dwi_3053

 Coordinate:

scf2_1100000004925:79745-79895 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.5 -6.3 -5.9

Flybase annnotation

exon [dwil_GLEANR_1996:2]; CDS [Dwil\GK19129-cds]; intron [Dwil\GK19129-in]

Repeatable elements

NameClassFamilyStrand
P_DBDNAP+
mature
  1. scf2_1100000010477:876-901 -
  2. scf2_1100000013355:1012-1037 -
  3. scf2_1100000008550:1348-1373 -
  4. scf2_1100000003550:1042-1067 -
  5. scf2_1100000004510:580532-580557 -
  6. scf2_1100000004514:704560-704585 -
  7. scf2_1100000004632:25654-25679 -
  8. scf2_1100000004632:26111-26136 -
  9. scf2_1100000004632:26568-26593 -
  10. scf2_1100000004947:704903-704928 -
  11. scf2_1100000004947:705360-705385 -
  12. scf2_1100000004947:712286-712311 -
  13. scf2_1100000004909:6789022-6789047 -
  14. scf2_1100000004921:2028146-2028171 -
  15. scf2_1100000004949:1469269-1469294 -
  16. scf2_1100000004949:1469728-1469753 -
  17. scf2_1100000004954:1819456-1819481 -
  18. scf2_1100000004954:2061921-2061946 -
  19. scf2_1100000004956:788337-788362 -
  20. scf2_1100000004963:336906-336931 -
  21. scf2_1100000010698:419-444 +
  22. scf2_1100000010698:876-901 +
  23. scf2_1100000008682:563-588 +
  24. scf2_1100000004515:2900706-2900731 +
  25. scf2_1100000004540:184391-184416 +
  26. scf2_1100000004558:1348920-1348945 +
  27. scf2_1100000004558:1349379-1349404 +
  28. scf2_1100000004590:3692640-3692665 +
  29. scf2_1100000004618:13097-13122 +
  30. scf2_1100000004902:39178-39203 +
  31. scf2_1100000004958:364463-364488 +
  32. scf2_1100000004961:1160347-1160372 +
  33. scf2_1100000004961:1701161-1701186 +
  34. scf2_1100000004961:1701621-1701646 +
  35. scf2_1100000004968:71783-71808 +
  36. scf2_1100000004968:72697-72722 +
  37. dwi_5370  scf2_1100000004968:2990759-2990784 +
  38. scf2_1100000004973:7616-7641 +
  39. scf2_1100000004973:8074-8099 +
  40. scf2_1100000005034:660-685 +
  41. scf2_1100000005091:134-159 +
  42. scf2_1100000004511:9099049-9099074 +
  43. scf2_1100000004521:2205003-2205028 +
  44. scf2_1100000004521:5253980-5254005 +
  45. scf2_1100000004590:3693557-3693582 +
  46. scf2_1100000004902:38721-38746 +
  47. dwi_3053  scf2_1100000004925:79814-79839 +
  48. scf2_1100000004949:514337-514362 +
  49. scf2_1100000004949:1470408-1470433 +
  50. scf2_1100000004949:1470867-1470892 +
  51. scf2_1100000004949:1471326-1471351 +
  52. scf2_1100000004958:364921-364946 +
  53. scf2_1100000004963:4610203-4610228 +
  54. scf2_1100000004967:2960277-2960302 +
  55. scf2_1100000004968:71323-71348 +
  56. scf2_1100000004968:72237-72262 +
  57. scf2_1100000004968:1925969-1925994 +
  58. scf2_1100000005034:203-228 +
  59. scf2_1100000009956:149-174 +
  60. scf2_1100000007537:678-703 +
star
  1. scf2_1100000001375:2848-2870 +
  2. scf2_1100000004511:2315358-2315380 +
  3. scf2_1100000004513:3223469-3223491 +
  4. scf2_1100000004516:1076875-1076897 +
  5. scf2_1100000004540:1090870-1090892 +
  6. scf2_1100000004585:2609866-2609888 +
  7. scf2_1100000004585:6900798-6900820 +
  8. scf2_1100000004590:2813308-2813330 +
  9. scf2_1100000004768:1450432-1450454 +
  10. scf2_1100000004870:20514-20536 +
  11. scf2_1100000004909:802064-802086 +
  12. scf2_1100000004921:1057910-1057932 +
  13. dwi_3053  scf2_1100000004925:79778-79800 +
  14. scf2_1100000004961:2421968-2421990 +
  15. scf2_1100000004963:4457223-4457245 +
  16. scf2_1100000004963:4476278-4476300 +
  17. scf2_1100000004965:771166-771188 +
  18. scf2_1100000004967:646640-646662 +
  19. scf2_1100000004967:4037697-4037719 +
  20. scf2_1100000009956:1262-1284 +
  21. scf2_1100000005091:97-119 +
  22. scf2_1100000010660:501-523 +
  23. scf2_1100000003264:1122-1144 +
  24. scf2_1100000008812:1465-1487 +
  25. scf2_1100000006337:166-188 +
  26. scf2_1100000004521:12390646-12390668 +
  27. scf2_1100000004585:7520245-7520267 +
  28. scf2_1100000004961:2236757-2236779 +
  29. scf2_1100000004968:71286-71308 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAAGAGGGTTTTTTACAGCAAGTGTAAAACGGCGGGCCTTCCGTTTTTGGTATTTGTCTAGATTTCGACCTTATTGACCTGCTCACCTTTTGTGCTGCCTATGATTTAAAATCTTACAATAAATCAGTAAGATTGACCTGAAGCCCCGCTCAAACAAATTTTATGATTTTTATTTATTAATAACCTTTAAATATTATTCAGCCAAGAATACAGAATTGTTAGCCGGTAACGGAAATGTTGGCGAGGACAAC
***********************************************************************************..........(((.............((((((((.........)))))))).......))).********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V119
head
 V117
male body
.......................................................................................................................TAAATCAGTAAGATTGACCTGAAGCC.......................................................................................................... 26 0 20 7.60 152 0 152 0 0 0
..................................................................................................................TACAATAAATCAGTAAGATTGACCTGA.............................................................................................................. 27 0 20 1.50 30 5 25 0 0 0
...................................................................................CACCTTTTGTGCTGCCTATGATT................................................................................................................................................. 23 0 20 1.35 27 25 2 0 0 0
.............................................................................................................................................................................................................GAATACAGAATTGTTAGCCGGTAA...................... 24 0 3 1.33 4 4 0 0 0 0
.......................................................................................................................TAAATCAGTAAGATTGACCTGAAGC........................................................................................................... 25 0 20 1.05 21 17 4 0 0 0
..........................................................................................................................................................................................................CAAGAATACAGAATTGTTAGCCGG......................... 24 0 3 1.00 3 3 0 0 0 0
..................................................................................................................................................................................................................CAGAATTGTTAGCCGGTAACGGAAA................ 25 0 3 0.67 2 1 1 0 0 0
...........................................................................................................................................................................................................................TAGCCGGTAACGTAACTG.............. 18 2 3 0.67 2 2 0 0 0 0
.............................................................................................................................................................................................................GAATACAGAATTGTTAGCCGGTA....................... 23 0 3 0.67 2 2 0 0 0 0
..................................................................................................................TACAATAAATCAGTAAGATTGACC................................................................................................................. 24 0 20 0.50 10 6 4 0 0 0
.............TACAGCAAGTGTAAAACGGCG......................................................................................................................................................................................................................... 21 0 20 0.40 8 1 6 0 0 1
.....................................................................................................................................TGACCTGAAGCCCCGCTCAAACAAATT........................................................................................... 27 0 20 0.40 8 8 0 0 0 0
..........................................................................................................................ATCAGTAAGATTGACCTGAAGCC.......................................................................................................... 23 0 20 0.40 8 2 0 6 0 0
..............................................................................................................................GTAAGATTGACCTGAAGCC.......................................................................................................... 19 0 20 0.35 7 1 0 6 0 0
............TTACAGCAAGTGTAAAACGGC.......................................................................................................................................................................................................................... 21 0 20 0.35 7 2 3 2 0 0
....................................................................................................................................................................................................................GAATTGTTAGCCGGTAACGGAA................. 22 0 3 0.33 1 1 0 0 0 0
..............................................................................................................................................................................................................AATACAGAATTGTTAGCCGGTAA...................... 23 0 3 0.33 1 1 0 0 0 0
...................................................................................................................................................................................................................AGAATTGTTAGCCGGTAACGGAAATGT............. 27 0 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................................................AGAATACAGAATTGTTAGCCGGTAA...................... 25 0 3 0.33 1 1 0 0 0 0
...................................................................................................................................................................................................................AGAATTGTTAGCCGGTAACGGAA................. 23 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................................................CAGAATTGTTAGCCGGTAACGGAA................. 24 0 3 0.33 1 1 0 0 0 0
...................................................................................................................................................................................................................AGAATTGTTAGCCGGTAACGGAAA................ 24 0 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................................................TACAGAATTGTTAGCCGGTAACGGAAA................ 27 0 3 0.33 1 1 0 0 0 0
........................................................................................................................................................................................................................TGTTAGCCGGTAACGGAAATGTTGG.......... 25 0 3 0.33 1 1 0 0 0 0
...................................................................................................................................................................................................................AGAATTGTTAGGCGGTAACGGA.................. 22 1 3 0.33 1 1 0 0 0 0
.............................................................................................................................AGTAAGATTGACCTGAAGCCC......................................................................................................... 21 0 20 0.30 6 0 0 6 0 0
..................................................................GACCTGATTGCCCTGCTAAC..................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 1
................AGCAAGTGTAAAACGGCGGGC...................................................................................................................................................................................................................... 21 0 20 0.20 4 0 4 0 0 0
..................CAAGTGTAAAACGGCGGGCCT.................................................................................................................................................................................................................... 21 0 20 0.20 4 1 3 0 0 0
...............................................................................................................................TAAGATTGACCTGAAGCC.......................................................................................................... 18 0 20 0.20 4 0 0 4 0 0
..................CAAGTGTAAAACGGCGGGGC..................................................................................................................................................................................................................... 20 1 20 0.20 4 0 0 4 0 0
...........................................................................................................................TCAGTAAGATTGACCTGAAGCC.......................................................................................................... 22 0 20 0.20 4 0 0 4 0 0
...........................................................................GGCCTGCTCACCTTTTGTGCT........................................................................................................................................................... 21 1 6 0.17 1 0 0 0 1 0
..................CAAGTGTAAAACGGCGGGC...................................................................................................................................................................................................................... 19 0 20 0.15 3 0 0 0 3 0
.................GCAAGTGTAAAACGGCGGGC...................................................................................................................................................................................................................... 20 0 20 0.15 3 0 3 0 0 0
..................................................................................................................TACAATAAATCAGTAAGATTGACCTGAA............................................................................................................. 28 0 20 0.15 3 2 1 0 0 0
.......................................................................................................................TAAATCAGTAAGATTGACCTGAAGCCC......................................................................................................... 27 0 20 0.15 3 0 3 0 0 0
...............................................................................................................................TAAGATTGACCTGAAGCCCCGC...................................................................................................... 22 0 20 0.15 3 0 0 3 0 0
.......................................................................................................................TAAATCAGTAAGATTGACCTGAAG............................................................................................................ 24 0 20 0.10 2 2 0 0 0 0
..........TTTTACAGCAAGTGTAAAACG............................................................................................................................................................................................................................ 21 0 20 0.10 2 0 2 0 0 0
..................CAAGTGTAAAACGGCGGGCC..................................................................................................................................................................................................................... 20 0 20 0.10 2 0 2 0 0 0
......................................................................................................................ATAAATCAGTAAGATTGACCTGAAGC........................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
....................................................TTTGTCTAGATTTCGACCTTATTG............................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0
...............................................................................TGCTCACCTTTTGTGCTGCCT....................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0
...........................................TTTTTGGTATTTGTCTAGATT........................................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0
...........TTTACAGCAAGTGTAAAACGG........................................................................................................................................................................................................................... 21 0 20 0.10 2 0 2 0 0 0
...................................................................................................................ACAATAAATCAGTAAGATTGACC................................................................................................................. 23 0 20 0.10 2 2 0 0 0 0
..................................................................................................................TACAATAAATCAGTAAGATTGACCT................................................................................................................ 25 0 20 0.10 2 2 0 0 0 0
....................................................................................................................CAATAAATCAGTAAGATTGACCTGAAGCC.......................................................................................................... 29 0 20 0.05 1 1 0 0 0 0
........................................................................................................................AAATCAGTAAGATTGACCTGAAGCCC......................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
............TTACAGCAAGTGTAGGACGGC.......................................................................................................................................................................................................................... 21 2 20 0.05 1 0 0 1 0 0
....................................................TTTGTCTAGATTTCGACCTT................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 1
...................................................ATTTGTCTAGATTTCGACCTT................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
..................................................................................................................TACAATAAATCAGTAAGATTG.................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
......GGTTTTTTACAGCAAGTGTAAAACGGC.......................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.................................................GTATTTGTCTAGATTTCGACC..................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................TCAGTAAGATTGACCTGAA............................................................................................................. 19 0 20 0.05 1 0 1 0 0 0
........................TAAAGCGGCGGGCCTTCCG................................................................................................................................................................................................................ 19 1 20 0.05 1 0 1 0 0 0
.............................................................................CCTGCTCACCTTTTGTGCTGCC........................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0
................................................GGTATTTGTCTGGATTTCGAC...................................................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0
..............ACAGCAAGTGTAAAACGGCGG........................................................................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
.......................................TCCGTTTTTGGTATTTGTCT................................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0
................AGCAAGTGTAAAGCGGCGGGGC..................................................................................................................................................................................................................... 22 2 20 0.05 1 0 0 1 0 0
..............ACAGCAAGTGTAAAACGGCG......................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0
..........................................................................................................................ATCAGTAAGATTGACCTGAAGCCCCGC...................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...........TTTACAGCAAGTGTAGAACGG........................................................................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 1 0
..................CAAGTGTAAGACGGCGGGCCT.................................................................................................................................................................................................................... 21 1 20 0.05 1 0 0 1 0 0
................AGCAAGTGTAAAACGGCGGGCCTTCCG................................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0
................AGCAAGTGTAAAACGGCGGGGC..................................................................................................................................................................................................................... 22 1 20 0.05 1 0 0 1 0 0
...........................................................................................................................TCAGTAAGATTGACCTGAAGC........................................................................................................... 21 0 20 0.05 1 0 0 0 1 0
.GGGAGGGTTTTTTACAGCAAGT.................................................................................................................................................................................................................................... 22 2 20 0.05 1 0 0 0 1 0
..................................................................................................................................GATTGACCTGAAGCCCCGCTCAA.................................................................................................. 23 0 20 0.05 1 0 1 0 0 0
..................................................................................................................TACACTAAATCAGTAAGATTGACCTG............................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
......................TGTAAAACGGCGGGCCTTCC................................................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
....................................................................................................................CAATAAATCAGTAAGATTGACCTGAAG............................................................................................................ 27 0 20 0.05 1 0 1 0 0 0
........................TAAAACGGCGGGCCTTCCGTT.............................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 1 0
............TTACAGCAAGTGTAAGACGGC.......................................................................................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................GTTGACCTGAAGCCCCGCTCA................................................................................................... 21 1 20 0.05 1 0 1 0 0 0
.....................................................................................................................AATAAATCAGTAAGATTGACCTGAAGC........................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
................................................................................................................................AAGATTGACCTGAAGCCCCGCTC.................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
.............................................TTTGGTATTTGTCTAGATTTCGA....................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................TTGACCTGAAGCCCCGCTCAA.................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
.....................GTGTAAAACGGCGGGCCT.................................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 1
...........TTTACAGCAAGTGTAAAACGGCGGGCCT.................................................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0
.....................................................................................................................AATAAATCAGTAAGATTGACCTGAAGCC.......................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
........................................................................................................................AAATCAGTAAGATTGACCTGAAGC........................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
..........TTTTACAGCAAGTGTAAAACGG........................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
............................................................................ACCTGCTCACCTTTTGTGCTGCCTAT..................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................AATCAGTAAGATTGACCTGAA............................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
..........................................................................................TGTGCTGCCTATGATTTAAAATCTTA....................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................TAAATCAGTAAGATTGACCCGAAGCC.......................................................................................................... 26 1 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TTTCTCCCAAAAAATGTCGTTCACATTTTGCCGCCCGGAAGGCAAAAACCATAAACAGATCTAAAGCTGGAATAACTGGACGAGTGGAAAACACGACGGATACTAAATTTTAGAATGTTATTTAGTCATTCTAACTGGACTTCGGGGCGAGTTTGTTTAAAATACTAAAAATAAATAATTATTGGAAATTTATAATAAGTCGGTTCTTATGTCTTAACAATCGGCCATTGCCTTTACAACCGCTCCTGTTG
**********************************************************************************************************..........(((.............((((((((.........)))))))).......))).*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body		 V119
head
........................................................................................................................................................................................................CGGTTCTTATGTCTTAACAATCGGCCAT....................... 28 0 3 1.33 4 3 0 1 0 0
..................................................................................................................................................................................................................GTCTTAACAATCGGCCATTGCCTTT................ 25 0 3 1.00 3 3 0 0 0 0
.............................GCCGCCCGGAAGGCAAAAACCATAAAC................................................................................................................................................................................................... 27 0 20 0.95 19 0 18 0 1 0
................................................................................................................................................................................................................ATGTCTTAACAATCGGCCATTGCCTT................. 26 0 3 0.67 2 2 0 0 0 0
...............................................................................................................................................................................................................TATGTCTTAACAATCGGCCATTGCCT.................. 26 0 3 0.67 2 2 0 0 0 0
............................................................................................................................................................................................................TCTTATGTCTTAACAATCGGCCAT....................... 24 0 3 0.67 2 2 0 0 0 0
.................................................................................................................................................................................................AATAAGTCGGTTCTTATGTCTTAACAA............................... 27 0 2 0.50 1 1 0 0 0 0
...........................TTGCCGCCCGGAAGGCAAAAACCAT....................................................................................................................................................................................................... 25 0 20 0.35 7 7 0 0 0 0
..........................................................................................................................................................................................................GTTCTTATGTCTTAACAATCGGCCAT....................... 26 0 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................................................TCTTATGTCTTAACAATCGGCCATT...................... 25 0 3 0.33 1 1 0 0 0 0
.........................................................................................................................................................................................................GGTTCTTATGTCTTAACAATCGGCCAT....................... 27 0 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................................................ATGTCTTAACAATCGGCCATTGCCT.................. 25 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................................................GTCTTAACAATCGGCCATTGCCTTTACA............. 28 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................................................GTCTTAACAATCGGCCATTGCCTT................. 24 0 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................................................ATGTCTTAACAATCGGCCATTGCCTTT................ 27 0 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................................................ATGTCTTAACGATCGGCCATTGCCTT................. 26 1 3 0.33 1 1 0 0 0 0
.................................................................................................................................................................................................................TGTCTTAACAATCGGCCATTGCCTT................. 25 0 3 0.33 1 1 0 0 0 0
..................................CCGGAAGGCAAAAACCATAAACAGA................................................................................................................................................................................................ 25 0 20 0.25 5 5 0 0 0 0
....................................................................GGAATTATTGGCCGAGTGGA................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0
............................................................................TGGACGAGTGGAAAACACGAC.......................................................................................................................................................... 21 0 20 0.15 3 3 0 0 0 0
..................................CCGGAAGGCAAAAACCATAAACAGATCT............................................................................................................................................................................................. 28 0 20 0.15 3 0 0 0 3 0
..........................TTTGCCGCCCGGAAGGCAAAAACCA........................................................................................................................................................................................................ 25 0 20 0.15 3 3 0 0 0 0
..........................................................................................ACACGACGGATACTAAATTTT............................................................................................................................................ 21 0 20 0.10 2 2 0 0 0 0
............................TGCCGCCCGGAAGGCAAAAACCAT....................................................................................................................................................................................................... 24 0 20 0.10 2 1 0 0 1 0
.TTCTCCCAAAAAATGTCGTTC..................................................................................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0
..................................TCGGAAGGCAAAAACCATAAACAGATCT............................................................................................................................................................................................. 28 1 20 0.10 2 2 0 0 0 0
...............................CGCCCGGAAGGCAAAAACCATA...................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
TTTCTCCCAAAAAATGTCGTTCACA.................................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
..................................................................................AGTGGAAAACACGACGGATACTA.................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
......................................AAGGCAAAAACCATAAACAG................................................................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0
.TTCTCCCAAAAAATGTCGTTCACAT................................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
...................................CCGAAGGCAAAAACCATAAACAGATCT............................................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................TCTAACTGGACTTCGGGGCGAGTT.................................................................................................. 24 0 20 0.05 1 0 0 0 0 1
..................................CCGGAAGGCAAAAACCATAAACAGCT............................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
................................................................................................................................................GGGCGAGTTTGTTTAAAA......................................................................................... 18 0 20 0.05 1 0 1 0 0 0
..................................CCGGAAGTCAAAAACCATAAACAGATCT............................................................................................................................................................................................. 28 1 20 0.05 1 0 1 0 0 0
........................................................AGATCTAAAGCTGGAATAA................................................................................................................................................................................ 19 0 20 0.05 1 0 1 0 0 0
.........................................GCAAAAACCATAAACAGATCTAAAGC........................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
.........................ATTTGCCGCCCGGAAGGCAAAAACCAT....................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
...................................CGGAAGGCAAAAACCATAAACACAT............................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0
.................................CCCGGAAGGCAAAAACCATA...................................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
..................................................................................AGTGGAAAACACGACGGATAC.................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0
...................................TGGAAGGCAAAAACCATAAACAGATCT............................................................................................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0
......................................AAGGCAAAAACCATAAACAGA................................................................................................................................................................................................ 21 0 20 0.05 1 0 1 0 0 0
...............................................ACCATAAACAGATCTAAAGCTGGAATA................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0
..................................TCGGAAGGCAAAAACCATAAACAGAT............................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
..................................CCGGAAGGCAAAAACCATAAACAGCTCT............................................................................................................................................................................................. 28 1 20 0.05 1 0 1 0 0 0
.....CCCAAAAAATGTCGTTCACATTTTGC............................................................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004925:79695-79945 + dwi_3053 AAAGAGGGTTTTTTACAGCAAGTGTAAAACGGCGGGCCTTCCGTTTTTGGTATTTGTCTAGATTTCGACCTTATTGACCTGCTCACCTTTTGTGCTGCCTATGATTTAAAATCTTACAATAAATCAGTAAGATTGACCTGAAGCCCCGCTCAAACAAATTTTATGATTTTT---ATTTATTAATAACCTTTAAATATTATTCAGCCAAGAATACAGAATTGTTAGCCGGTAACGGAAATGTTGGCGAGGACAAC
dp5 Unknown_group_58:47108-47200 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTATTATC---ATTTATTAATAATCCTTATTTTTTATTCAGCCAAAAATACAGAAATGCTATCAAATAATGGAAATGTTGAAAATGACAAT
droPer2 scaffold_51:286852-286944 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTATTATC---ATTTATTAATAATCCTTATTTTTTATTCAGCCAAAAATACAGAAATGCTATCAAATAATGGAAATGTTGAAAATGACAAT
droBip1 scf7180000393926:19379-19470 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTATTATT---GTTTATTAATA-TTTTTATTTTTTGATCAGCCAAGAATACTGAATTGTTGTCAGGAAATGGAAACGTAGATGAAGACAAT
droKik1 scf7180000301678:5935-6022 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-TGTTTA-------TTATTAATTATTATTTTATTCCATTCAGCAAAAAATACAAAATTATTATCTAATAACGGTAATGAAGAGGAGGACAAA
droFic1 scf7180000453728:11962-12051 + A-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATTT---AATTAATTATGGTTTTTATACTTAATTTAGCAAAAAACACTGAATTGTTATCGAGCAATGGCAATGTGGACGAGGACAAC
droRho1 scf7180000772323:935-1024 + T-----------------------------------------------------------------------------------------------------------------------------------------------------------------GTTATTATT---ATTTACTTATATTTTTAATTTTATACTCAGCCAAGAATACTGAATTGTTGTCAGCCAATGGTAACATAGAGGAAGATGAC
droTak1 scf7180000414224:7035-7119 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------TCCTTATT---TAAAAATCCTTA-TTTTTATTGAGCCAAGAATACGGAAATGTTTTCAAACAATCAAAATGTTGATAAAGACAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAAGAGGGTTTTTTACAGCAAGTGTAAAACGGCGGGCCTTCCGTTTTTGGTATTTGTCTAGATTTCGACCTTATTGACCTGCTCACCTTTTGTGCTGCCTATGATTTAAAATCTTACAATAAATCAGTAAGATTGACCTGAAGCCCCGCTCAAACAAATTTTATGATTTTT---ATTTATTAATAACCTTTAAATATTATTCAGCCAAGAATACAGAATTGTTAGCCGGTAACGGAAATGTTGGCGAGGACAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................TAAATCAGTAAGATTGACCTGAAGCC.............................................................................................................26207.601520001520
..................................................................................................................TACAATAAATCAGTAAGATTGACCTGA.................................................................................................................27201.5030050250
...................................................................................CACCTTTTGTGCTGCCTATGATT....................................................................................................................................................23201.3527025020
................................................................................................................................................................................................................GAATACAGAATTGTTAGCCGGTAA......................2431.33404000
.......................................................................................................................TAAATCAGTAAGATTGACCTGAAGC..............................................................................................................25201.0521017040
.............................................................................................................................................................................................................CAAGAATACAGAATTGTTAGCCGG.........................2431.00303000
.....................................................................................................................................................................................................................CAGAATTGTTAGCCGGTAACGGAAA................2530.67201010
................................................................................................................................................................................................................GAATACAGAATTGTTAGCCGGTA.......................2330.67202000
..................................................................................................................TACAATAAATCAGTAAGATTGACC....................................................................................................................24200.501006040
.............TACAGCAAGTGTAAAACGGCG............................................................................................................................................................................................................................21200.40801160
.....................................................................................................................................TGACCTGAAGCCCCGCTCAAACAAATT..............................................................................................27200.40808000
..........................................................................................................................ATCAGTAAGATTGACCTGAAGCC.............................................................................................................23200.40862000
..............................................................................................................................GTAAGATTGACCTGAAGCC.............................................................................................................19200.35761000
............TTACAGCAAGTGTAAAACGGC.............................................................................................................................................................................................................................21200.35722030
.......................................................................................................................................................................................................................GAATTGTTAGCCGGTAACGGAA.................2230.33101000
.................................................................................................................................................................................................................AATACAGAATTGTTAGCCGGTAA......................2330.33101000
......................................................................................................................................................................................................................AGAATTGTTAGCCGGTAACGGAAATGT.............2730.33101000
...............................................................................................................................................................................................................AGAATACAGAATTGTTAGCCGGTAA......................2530.33101000
......................................................................................................................................................................................................................AGAATTGTTAGCCGGTAACGGAA.................2330.33101000
.....................................................................................................................................................................................................................CAGAATTGTTAGCCGGTAACGGAA.................2430.33101000
......................................................................................................................................................................................................................AGAATTGTTAGCCGGTAACGGAAA................2430.33101000
...................................................................................................................................................................................................................TACAGAATTGTTAGCCGGTAACGGAAA................2730.33101000
...........................................................................................................................................................................................................................TGTTAGCCGGTAACGGAAATGTTGG..........2530.33101000
.............................................................................................................................AGTAAGATTGACCTGAAGCCC............................................................................................................21200.30660000
................AGCAAGTGTAAAACGGCGGGC.........................................................................................................................................................................................................................21200.20400040
..................CAAGTGTAAAACGGCGGGCCT.......................................................................................................................................................................................................................21200.20401030
...............................................................................................................................TAAGATTGACCTGAAGCC.............................................................................................................18200.20440000
...........................................................................................................................TCAGTAAGATTGACCTGAAGCC.............................................................................................................22200.20440000
..................CAAGTGTAAAACGGCGGGC.........................................................................................................................................................................................................................19200.15300003
.................GCAAGTGTAAAACGGCGGGC.........................................................................................................................................................................................................................20200.15300030
..................................................................................................................TACAATAAATCAGTAAGATTGACCTGAA................................................................................................................28200.15302010
.......................................................................................................................TAAATCAGTAAGATTGACCTGAAGCCC............................................................................................................27200.15300030
...............................................................................................................................TAAGATTGACCTGAAGCCCCGC.........................................................................................................22200.15330000
.......................................................................................................................TAAATCAGTAAGATTGACCTGAAG...............................................................................................................24200.10202000
..........TTTTACAGCAAGTGTAAAACG...............................................................................................................................................................................................................................21200.10200020
..................CAAGTGTAAAACGGCGGGCC........................................................................................................................................................................................................................20200.10200020
......................................................................................................................ATAAATCAGTAAGATTGACCTGAAGC..............................................................................................................26200.10202000
....................................................TTTGTCTAGATTTCGACCTTATTG..................................................................................................................................................................................24200.10202000
...............................................................................TGCTCACCTTTTGTGCTGCCT..........................................................................................................................................................21200.10202000
...........................................TTTTTGGTATTTGTCTAGATT..............................................................................................................................................................................................21200.10202000
...........TTTACAGCAAGTGTAAAACGG..............................................................................................................................................................................................................................21200.10200020
...................................................................................................................ACAATAAATCAGTAAGATTGACC....................................................................................................................23200.10202000
..................................................................................................................TACAATAAATCAGTAAGATTGACCT...................................................................................................................25200.10202000
....................................................................................................................CAATAAATCAGTAAGATTGACCTGAAGCC.............................................................................................................29200.05101000
........................................................................................................................AAATCAGTAAGATTGACCTGAAGCCC............................................................................................................26200.05101000
....................................................TTTGTCTAGATTTCGACCTT......................................................................................................................................................................................20200.05100100
...................................................ATTTGTCTAGATTTCGACCTT......................................................................................................................................................................................21200.05100010
..................................................................................................................TACAATAAATCAGTAAGATTG.......................................................................................................................21200.05100010
......GGTTTTTTACAGCAAGTGTAAAACGGC.............................................................................................................................................................................................................................27200.05101000
.................................................GTATTTGTCTAGATTTCGACC........................................................................................................................................................................................21200.05101000
...........................................................................................................................TCAGTAAGATTGACCTGAA................................................................................................................19200.05100010
.............................................................................CCTGCTCACCTTTTGTGCTGCC...........................................................................................................................................................22200.05101000
..............ACAGCAAGTGTAAAACGGCGG...........................................................................................................................................................................................................................21200.05101000
.......................................TCCGTTTTTGGTATTTGTCT...................................................................................................................................................................................................20200.05101000
..............ACAGCAAGTGTAAAACGGCG............................................................................................................................................................................................................................20200.05100001
..........................................................................................................................ATCAGTAAGATTGACCTGAAGCCCCGC.........................................................................................................27200.05101000
................AGCAAGTGTAAAACGGCGGGCCTTCCG...................................................................................................................................................................................................................27200.05101000
...........................................................................................................................TCAGTAAGATTGACCTGAAGC..............................................................................................................21200.05100001
..................................................................................................................................GATTGACCTGAAGCCCCGCTCAA.....................................................................................................23200.05100010
......................TGTAAAACGGCGGGCCTTCC....................................................................................................................................................................................................................20200.05101000
....................................................................................................................CAATAAATCAGTAAGATTGACCTGAAG...............................................................................................................27200.05100010
........................TAAAACGGCGGGCCTTCCGTT.................................................................................................................................................................................................................21200.05100001
.....................................................................................................................AATAAATCAGTAAGATTGACCTGAAGC..............................................................................................................27200.05100010
................................................................................................................................AAGATTGACCTGAAGCCCCGCTC.......................................................................................................23200.05100010
.............................................TTTGGTATTTGTCTAGATTTCGA..........................................................................................................................................................................................23200.05100010
....................................................................................................................................TTGACCTGAAGCCCCGCTCAA.....................................................................................................21200.05101000
.....................GTGTAAAACGGCGGGCCT.......................................................................................................................................................................................................................18200.05100100
...........TTTACAGCAAGTGTAAAACGGCGGGCCT.......................................................................................................................................................................................................................28200.05100010
.....................................................................................................................AATAAATCAGTAAGATTGACCTGAAGCC.............................................................................................................28200.05101000
........................................................................................................................AAATCAGTAAGATTGACCTGAAGC..............................................................................................................24200.05100010
..........TTTTACAGCAAGTGTAAAACGG..............................................................................................................................................................................................................................22200.05101000
............................................................................ACCTGCTCACCTTTTGTGCTGCCTAT........................................................................................................................................................26200.05101000
.........................................................................................................................AATCAGTAAGATTGACCTGAA................................................................................................................21200.05101000
..........................................................................................TGTGCTGCCTATGATTTAAAATCTTA..........................................................................................................................................26200.05101000
dp5
T--------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTATTATC---ATTTATTAATAATCCTTATTTTTTATTCAGCCAAAAATACAGAAATGCTATCAAATAATGGAAATGTTGAAAATGACAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................TAATGGAAATGTTGAAAATGACAAT2522.5050000000230
..............................................................................................................................................................................................................................TATCAAATAATGGAAATGTTGAAAA.......2521.0020000000200
..............................................................................................................................................................................................................................TATCAAATAATGGAAATGTTGAA.........2320.5010000000010
droPer2
T--------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTATTATC---ATTTATTAATAATCCTTATTTTTTATTCAGCCAAAAATACAGAAATGCTATCAAATAATGGAAATGTTGAAAATGACAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droBip1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTTATTATT---GTTTATTAATA-TTTTTATTTTTTGATCAGCCAAGAATACTGAATTGTTGTCAGGAAATGGAAACGTAGATGAAGACAATSizeHit CountTotal NormTotal
No Reads
droKik1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-TGTTTA-------TTATTAATTATTATTTTATTCCATTCAGCAAAAAATACAAAATTATTATCTAATAACGGTAATGAAGAGGAGGACAAASizeHit CountTotal NormTotal
No Reads
droFic1
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATTT---AATTAATTATGGTTTTTATACTTAATTTAGCAAAAAACACTGAATTGTTATCGAGCAATGGCAATGTGGACGAGGACAACSizeHit CountTotal NormTotal
No Reads
droRho1
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------GTTATTATT---ATTTACTTATATTTTTAATTTTATACTCAGCCAAGAATACTGAATTGTTGTCAGCCAATGGTAACATAGAGGAAGATGACSizeHit CountTotal NormTotal
No Reads
droTak1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------TCCTTATT---TAAAAATCCTTA-TTTTTATTGAGCCAAGAATACGGAAATGTTTTCAAACAATCAAAATGTTGATAAAGACAACSizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 06:00 AM