ID:

dwi_304

 Coordinate:

scf2_1100000004058:9937-10087 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.1 -17.1 -17.1

Flybase annnotation

exon [dwil_GLEANR_3366:3]; CDS [Dwil\GK20600-cds]; intron [Dwil\GK20600-in]

Repeatable elements

NameClassFamilyStrand
DOC2_DMLINEJockey+
Gypsy-18_DWil-LTRLTRGypsy-
mature
  1. scf2_1100000010345:1764-1789 +
  2. scf2_1100000002673:25707-25732 +
  3. scf2_1100000001384:821-846 +
  4. scf2_1100000011036:810-835 +
  5. scf2_1100000004519:43440-43465 +
  6. scf2_1100000006516:788-813 +
  7. scf2_1100000006539:277-302 +
  8. dwi_304  scf2_1100000004058:10023-10048 +
  9. scf2_1100000006571:783-808 +
  10. scf2_1100000004237:863-888 +
  11. scf2_1100000014692:988-1013 +
  12. scf2_1100000012146:449-474 +
  13. scf2_1100000004573:18394-18419 +
  14. scf2_1100000004944:72249-72274 +
  15. scf2_1100000004950:58873-58898 +
  16. scf2_1100000004953:562410-562435 +
  17. scf2_1100000004958:2430106-2430131 +
  18. scf2_1100000004958:2670437-2670462 +
  19. scf2_1100000004962:512355-512380 +
  20. scf2_1100000004968:1315026-1315051 +
star
  1. dwi_304  scf2_1100000004058:9944-9964 +
  2. scf2_1100000006873:836-856 +
  3. scf2_1100000004619:18317-18337 +
  4. scf2_1100000004619:24480-24500 +
  5. scf2_1100000004832:144742-144762 +
  6. scf2_1100000004852:59126-59146 +
  7. scf2_1100000004852:274129-274149 +
  8. scf2_1100000004876:37097-37117 +
  9. scf2_1100000004949:1763444-1763464 +
  10. scf2_1100000004957:4722-4742 +
  11. scf2_1100000004958:1048961-1048981 +
  12. scf2_1100000004958:2068334-2068354 +
  13. scf2_1100000004958:2236420-2236440 +
  14. scf2_1100000004961:3497577-3497597 +
  15. scf2_1100000004961:5422243-5422263 +
  16. scf2_1100000004965:848687-848707 +
  17. scf2_1100000004968:2554843-2554863 +
  18. scf2_1100000004968:2897196-2897216 +
  19. scf2_1100000000312:4996-5016 +
  20. scf2_1100000000019:9967-9987 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACTAAAAGAATACTGTGCGGCTGTCTTTCTCGACGTTGCCCAGGCTTTCGATAGAGTTTGGCTGGAGGGTCTGATGTTCAAAATCCGGCACAAACTGCCACAGTACACACACAAACTCATGGAATCTTACCTTTTGTAACCTTCCTATTCGGTTTCTCGTTGCGCGCCATAATTTTTATATAATCGGTTCTCCTATCACAGCGACGATAAAGCTATCGATAACCAAAAAGAAGGCGGTAGGTGAATTGCAG
*********************************************************(((((((((.....(((...)))...)))))).)))((((...))))........(((((...((((..((((.....))))..)))).....))))).......***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body		 V119
head
............CTGTGCGGCTGTCTTTCTCGA.......................................................................................................................................................................................................................... 21 0 20 0.55 11 11 0 0 0 0
............................................................................................................................................................................................TCTCCTATCACAGCGACGATAAAGC...................................... 25 0 20 0.40 8 4 4 0 0 0
........................................................................................................................................TAACCTTCCTATTCGGTTTCTCGTTG......................................................................................... 26 0 20 0.30 6 5 1 0 0 0
................................................CGATAGAGTTTGGCTGGAGG....................................................................................................................................................................................... 20 0 20 0.30 6 6 0 0 0 0
.................................................................................................................................................................................................TATCACAGCGACGATAAAGCTATCGA................................ 26 0 20 0.25 5 5 0 0 0 0
..........TACTGTGCGGCTGTCTTTCTCG........................................................................................................................................................................................................................... 22 0 20 0.20 4 4 0 0 0 0
ACTAAAAGAATACTGTGCGGCTGT................................................................................................................................................................................................................................... 24 0 20 0.20 4 4 0 0 0 0
...................................................................................................................................................................................................TCACAGCGACGATAAAGCTATCGAT............................... 25 0 20 0.20 4 0 4 0 0 0
.........................................................TTGGCTGGAGGGTCTGATGTT............................................................................................................................................................................. 21 0 20 0.15 3 3 0 0 0 0
...........................................................................................................................................................................................TTCTCCTATCACAGCGACGATAAAGC...................................... 26 0 20 0.15 3 1 2 0 0 0
.....................................................GAGTTTGGCTGGAGGGTCTG.................................................................................................................................................................................. 20 0 20 0.15 3 3 0 0 0 0
......................................................................................................................................TGTAACCTTCCTATTCGGTTTCTCGT........................................................................................... 26 0 20 0.15 3 1 2 0 0 0
.........................................................................................................................................AACCTTCCTATTCGGTTTCTCGTTG......................................................................................... 25 0 20 0.15 3 3 0 0 0 0
...................GCTGTCTTTCTCGACGTTGCCC.................................................................................................................................................................................................................. 22 0 20 0.15 3 3 0 0 0 0
...................................................................................................................................................................................................TCACAGCGACGATAAAGCTATCGA................................ 24 0 20 0.10 2 0 2 0 0 0
..TAAAAGAATACTGTGCGGCTGTCTT................................................................................................................................................................................................................................ 25 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................................TTATATAATCGGTTCTCCTATCACAG.................................................. 26 0 20 0.10 2 1 1 0 0 0
.............................................................................................................CACAAACTCATGGAATCTTAC......................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0
..................................................................................................................................................................................TATAATCGGTTCTCCTATCAC.................................................... 21 0 20 0.10 2 2 0 0 0 0
..............................CGACGTTGCCCAGGCTTTCGA........................................................................................................................................................................................................ 21 0 20 0.10 2 2 0 0 0 0
.............TGTGCGGCTGTCTTTCTCGACGTTG..................................................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0
...................................TTGCCCAGGCTTTCGATAGAGTT................................................................................................................................................................................................. 23 0 20 0.10 2 0 2 0 0 0
.................................................................................................................................................................................................TATCACAGCGACGATAAAGCTATCG................................. 25 0 20 0.10 2 0 2 0 0 0
............................................................................................................................................................................................TCTCCTATCACAGCGACGATAAAGCTAT................................... 28 0 20 0.10 2 2 0 0 0 0
...............................................................................................TGCCACAGTACACACACAAACTCATGGA................................................................................................................................ 28 0 20 0.10 2 2 0 0 0 0
...AAAAGAATACTGTGCGGCTGTCTTTC.............................................................................................................................................................................................................................. 26 0 20 0.10 2 2 0 0 0 0
....................CTGTCTTTCTCGACGTTGCCCAGG............................................................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0
....AAAGAATACTGTGCGGCTGTC.................................................................................................................................................................................................................................. 21 0 20 0.10 2 0 0 2 0 0
.....AAGAATACTGTGCGGCTGTCT................................................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 1
...............................................................................................................................................................................................................TAAAGCTATCGATAACCAAAAAGAAG.................. 26 0 20 0.05 1 0 1 0 0 0
.......GAATACTGTGCGGCTGTCTTTCTC............................................................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
...........................................................................................................CACACAAACTCATGGAATCTTA.......................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
.........................................................................................................CACACACAAACTCATGGAAT.............................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................TCCTATCACAGCGACGATAAAGCTAT................................... 26 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................................AAAAGAAGGCGGTAGGTGAATT.... 22 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................TAATCGGTTCTCCTATCACAGCGACGA............................................ 27 0 20 0.05 1 1 0 0 0 0
.............................TCGACGTTGCCCAGGCTTTCGA........................................................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0
..................................................ATAGAGTTTGGCCGGAGGG...................................................................................................................................................................................... 19 1 20 0.05 1 0 0 0 1 0
.........................................................................................................CACACACAAACTCATGGAATC............................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................TAATCGGTTCTCCTATCACAGC................................................. 22 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................................AAAAGAAGGCGGTAGGTGAATTGCA. 25 0 20 0.05 1 0 1 0 0 0
...................................................................................................ACAGTACACACACAAACTCATGGG................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0
.........................................AGGCTTTCGATAGAGTTTGGCT............................................................................................................................................................................................ 22 0 20 0.05 1 0 0 0 1 0
...................................................TAGAGTTTGGCTGGAGGGTC.................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................................GATAACCAAAAAGAAGGCGGTAGGT......... 25 0 20 0.05 1 0 0 0 1 0
.............................................................................................................................................TTCCTATTCGGTTTCTCGTTGCGCGC.................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................CGGTTTCTCGTTGCGCGC.................................................................................... 18 0 20 0.05 1 0 0 1 0 0
................................................................................................................................................CTATTCGGTTTCTCGTTGCGCGC.................................................................................... 23 0 20 0.05 1 0 1 0 0 0
..........TACTGTGCGGCTGTCTTTCTC............................................................................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................TTCTCCTATCACAGCGACGAT........................................... 21 0 20 0.05 1 1 0 0 0 0
..............GTGCGGCTGTCTTTCTCGAC......................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
...................GCTGTCTTTCTCGACGTTGCCCAC................................................................................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................TATATAATCGGTTCTCCTATCACAGCG................................................ 27 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................TAATCGGTTCTCCTATCACAGCGACG............................................. 26 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................................................................TCTCCTATCACGGCGACGATAAAGCT..................................... 26 1 20 0.05 1 0 1 0 0 0
.............................................................................................................................................TTCCTATTCGGTTTCTCGTTGCGCGCC................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................TATCACAGCGACGATAAAGCTATCGATA.............................. 28 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................TTCCTATTCGGTTTCTCGTTGCGCG..................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.............TGTGCGGCTGTCTTTCTCGACG........................................................................................................................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................................TATAATCGGTTCTCCTATCACAGCGACGA............................................ 29 0 20 0.05 1 1 0 0 0 0
...............................................................................................TGCCACAGTACACACACAAACTCATG.................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................AATCGGTTCTCCTATCACAGCGACGA............................................ 26 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TGATTTTCTTATGACACGCCGACAGAAAGAGCTGCAACGGGTCCGAAAGCTATCTCAAACCGACCTCCCAGACTACAAGTTTTAGGCCGTGTTTGACGGTGTCATGTGTGTGTTTGAGTACCTTAGAATGGAAAACATTGGAAGGATAAGCCAAAGAGCAACGCGCGGTATTAAAAATATATTAGCCAAGAGGATAGTGTCGCTGCTATTTCGATAGCTATTGGTTTTTCTTCCGCCATCCACTTAACGTC
*****************************************************************************************(((((((((.....(((...)))...)))))).)))((((...))))........(((((...((((..((((.....))))..)))).....))))).......********************************************************* 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 M020
head
 V117
male body		 V119
head
...........................AGAGCTGCAACGGGTCCGAAAGCTATCT.................................................................................................................................................................................................... 28 0 20 2.20 44 0 44 0 0 0
.....................................................CTCAAACCGACCTCCCAGACTACAAGT........................................................................................................................................................................... 27 0 20 1.85 37 37 0 0 0 0
........................................................AAACCGACCTCCCAGACTACAAGTTT......................................................................................................................................................................... 26 0 20 0.90 18 18 0 0 0 0
..............................GCTGCAACGGGTCCGAAAGCTAT...................................................................................................................................................................................................... 23 0 20 0.55 11 0 11 0 0 0
................................................................CTCCCAGACTACAAGTTTTAG...................................................................................................................................................................... 21 0 20 0.45 9 0 9 0 0 0
.................................................................................................................................................................................................................................TTTTCTTCCGCCATCCACTTAACGT. 25 0 20 0.40 8 3 5 0 0 0
...................................................................................................................................................................................................AGTGTCGCTGCTATTTCGATAGCTAT.............................. 26 0 20 0.35 7 0 7 0 0 0
............................................................CGACCTCCCAGACTACAAGTTT......................................................................................................................................................................... 22 0 20 0.20 4 4 0 0 0 0
.......................................................................................................................................................................................AGCCAAGAGGATAGTGTCGCTGCTAT.......................................... 26 0 20 0.20 4 4 0 0 0 0
......TCTTATGACACGCCGACAGAAAGAGC........................................................................................................................................................................................................................... 26 0 20 0.20 4 4 0 0 0 0
.............................................................................................................................................................................AAAATATATTAGCCAAGAGGATAGT..................................................... 25 0 20 0.15 3 3 0 0 0 0
....TTTCTTATGACACGCCGACAGAAAGAGCT.......................................................................................................................................................................................................................... 29 0 20 0.15 3 0 3 0 0 0
...........................................................................................................GTGTGTTTGAGTACCTTAGAATGG........................................................................................................................ 24 0 20 0.10 2 2 0 0 0 0
........................................................................................................................................TTTGGAAGGATAAGCCAAAGAGCAAC......................................................................................... 26 1 20 0.10 2 2 0 0 0 0
..............................................................................................GACGGTGTCATGTGTGTGTTTGAG..................................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0
.....................................................................................................................................................................................................TGTCGCTGCTATTTCGATAGCTAT.............................. 24 0 20 0.10 2 2 0 0 0 0
.....................................................................................................................................................................................................TGTCGCTGCTATTTCGATAGCT................................ 22 0 20 0.10 2 2 0 0 0 0
........................................................................................................................................ATTGGAAGGATAAGCCAAAGAGCAAC......................................................................................... 26 0 20 0.10 2 2 0 0 0 0
.................................................................................................GGTGTCATGTGTGTGTTTGAGT.................................................................................................................................... 22 0 20 0.10 2 0 2 0 0 0
...........................................................CCGACCTCCCAGACTACAAGTTT......................................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0
............................................................................CAGTTTTAGGCCGCGTTT............................................................................................................................................................. 18 2 12 0.08 1 0 0 1 0 0
........................................................................................................................................................AAAGAGCAACGCGCGGTATTAAAAAT......................................................................... 26 0 14 0.07 1 1 0 0 0 0
..........................................................................................................................................................AGAGCAACACGCGGTATTAAAAATATAT..................................................................... 28 1 19 0.05 1 1 0 0 0 0
.........................................TCCGAAAGCTATCTCAAACCGACC.......................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
.....................................................CTCAAACCGACCTCCCAGACTACAAGTG.......................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
.........................................................................................................GTGTGTGTTTGAGTACCTTAGCAT.......................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0
......................................................................................................CATGTGTGTGGTTGAGTACCTT............................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0
........................GAAAGAGCTGCAACGGGTCCCA............................................................................................................................................................................................................. 22 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................................TTGGAAGGATAAGCCAAAGATCAACG........................................................................................ 26 1 20 0.05 1 1 0 0 0 0
.................................................................CCCCAGACTACAAGTTTTAGGCCGT................................................................................................................................................................. 25 1 20 0.05 1 0 0 1 0 0
...........................................................................................................................................................................TAAAAATATATTAGCCAAGAGGATAGT..................................................... 27 0 20 0.05 1 1 0 0 0 0
....................................................................................................GTCATGTGTGCGTTTGAGTACCT................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0
....................GACAGAAAGAGCTGCAACGGGTCCGAAC........................................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................TGGAAGGATAAGCCAAAGAGCAA.......................................................................................... 23 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................GTGTCGCTGCTATTTCGATAGCTAT.............................. 25 0 20 0.05 1 0 1 0 0 0
....................GACAGAAAGAGCTGCAACGGGTCC............................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................AAGAGGATAGTGTCGCTGC............................................. 19 0 20 0.05 1 0 0 1 0 0
.......................................................................ACTACAAGTTTTAGGCCGT................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0
..........................................................................................................TGTGTGTTTGAGTACCTTAGA............................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
.....................................................................................................TCATGTGTGTGTTTGAGTACCTTAG............................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................TATTAGCCAAGAGGATAGTGTCGCT............................................... 25 0 20 0.05 1 0 1 0 0 0
................................................................................................CGGTGTCATGTGTGTGTTTGAGTA................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0
.................................................................................................GGTGTCATGTGTGTGTTTGAGTACC................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
......................................................TCACACCGACCTCCCAGACTACAAGT........................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
..........................................................................................................................................TGGAAGGATAAGCCAAAGATCAAC......................................................................................... 24 1 20 0.05 1 1 0 0 0 0
...................................AACGGGTCCGAAAGCTAT...................................................................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0 0
.GATTTTCTTATGACACGCCGACAGAA................................................................................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0
................................................................CTCCCAGACTACAAGTTTTAGGCCGT................................................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0
....................................................................................................................................................................................................................GGTAGCTATTGGTTTTTCG.................... 19 2 20 0.05 1 0 0 0 0 1
..........................................................................................................................................TGGAAGGATCAGCCAAAGAGCAACG........................................................................................ 25 1 20 0.05 1 1 0 0 0 0
........................................................TAACCGACCTCCCAGACTACAAGTTT......................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
..............................................................................................GACGGTGTCATTTGTGTGTTTGAGT.................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
....................GACAGAAAGAGCTGCAACGGGTCCGAA............................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0 0
...............................CTGCAACGGGTCCGAAAGCTATCTCAA................................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0
...............ACGCCGACACAAAGAGCTGCA....................................................................................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................................AGCCAAGAGGATAGTGTCGCTGCTA........................................... 25 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004058:9887-10137 + dwi_304 ACTA----AAAGAATACTGTGCGGCTGTCTTTCTCGACGTTGCCCAGGCTTTCGATAGAGTTTGGCTGGAGGGTCTGATGTTCAAAATCCGGCACAAACTGCCACAGTACACACACAAACTCATGGAATCTTACCTTTT-----GTAAC--CTTCCTATTCGGTTTCTCGTTGCGCGCCATAATTTTTATATAA---TCGGTTCTCCTATCACAGCGACGATAAAGCTATCGATAACCAAAAAGAAGGCGGTAGGTGAATTGCAG
droVir3 scaffold_12100:15072-15193 + --------------TACTGTGTGGCGCCTTTTGTCAAAGTCAACCAGGCATTTGATCGTATTTGGCACCTAGGGCTGCTGGCAAAATTGAAACGCGGTCTGCCATCGTCCTACTTCAGTCTAATCCGATCCTACTT---------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6482:326158-326263 + CAAC----AAAAAGCACTGTAATGCCATTTTTCTGGACATCGAACAGGCCTTCGATAGGGTATGGCACCCAGGTCTGCTGCAGAAGATTAAGGAACAGCTGCCCTCGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15116:186548-186695 + AAAT----AAGCAGTACAGCTCTGCCGTCTTCCTGTATATCCAGCAAGCATTTGATCGCGTATGGCATGATGGCCTGCTTTTTAAGCTTAAGTCCCTGCTACCATCAGCGCAGTATTTACTGCTCAGGTCTTACCTGCTTGGCCGTTCT--GT-----------------------------------------------------T----------------------------------------------------------
dp5 Unknown_group_302:14699-14830 - CAGA----CGAGAATATTGCTCCACTGTCTTCTTAGATGTCGGCCAAGCTTTCGACCGCATTTAGCTGGATGGCTTTATTAAAAAAATCAGAATATTACTTCCACAGAACACCAATAAAATATTGGAGTCATACCT---------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_76:145287-145418 - AAGA----CGAGAATATTGCTCCACTGTCTTCTTAGATGTCGGCCAAGCTTTCGACCGCATTTAGCTGGATGGCTTAATTAAAAAAATCAGAATATTACTTCCACAGAACACCAATAAAATATTGGAGTCATACCT---------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13770:553549-553730 + ACAG----CGAGAATACTGTAGCGCTATTTTTCTCGACGTATCTTAAGCTTTCGACCGAGTTTGGCTTAATAGACTCATGCACAAAATTAAAACGTATTTCCAAACATACACCCACATTCTACTGTAACTTTAGTTCAAC---ATATAA--TCTT-TATTGTGTTTTTGGGTTTTTGCCAT-------------------------------------------------------------------------GTAAACTTTAT
droBip1 scf7180000396617:24389-24568 + ACAT----CGAAAATACTGCAGAGCTATTTTTCTCGGCGTATCTGAAGCCCTCGATCGTGTTTGGCTAAATGGACTCATGCACAAAATTAAAACCAATCTGCCAACATACACTCTCAAGTAACTTGAGTCGTTCCCCTATGATAGGGTA--TTATCATTGAGATGCATCGCATCCCA---------------------TAATTTTTA----------------------------------------------------------
droKik1 scf7180000298103:3258-3391 + ACAT----CGAGAATATTGCAGCGCAATATTTCTAGACGTTTCTCAAGCTTTCGACCGCGTCTGGCTCAATGGCCTCATGCACAAAACTAAAACACTCTTGCCGGCATACACACACAAATTACTTGAGTCGTATCTCT-------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453786:17479-17628 + AAAT----CAAGAGTACTGTTCCGCAGTTTTTCTGGATGT----CGGGCCTTCGACCACGTTTGGTTAGACAGCTTGATTTATAAAATTCAAAATTTGCTACCACAGAACACCCACAAAATACTGGAGACATATCTTTTTT----------TTTCTTG---------------------------------------TTTTTTTTTT----------------------------------------------------------
droEle1 scf7180000488745:23686-23841 - AAGAAATTTTAGAGTTTTTCTCTACTGTTTTTCTGGATGTTTCCCAGGCTTTCGAGCGCGTTTGGCTGGTCGGCTTAATTCATAAAATTAAAATAATTCT-CAACAGAGCACACATAAAATATTGGAGTCTTATTTACC-----GCAATTATTTACGATTC---------------------------------------------G----------------------------------------------------------
droRho1 scf7180000777911:5091-5294 - AAAA----CGAGAGTACTGTACTGCCATATTTTTAGACGTCTCTCAAGCATTTGATAGAGTTTGGCTAGAAGGTCTAAT---CAAGATCAAGACAATGCTCCCCTACAACACCCATAAGCTTTTAGAGTCTTACCTCTACGACAGAAAA--TTTGCTGTTCGATGCAACACTGCTAT---------------AACTGACGATTTTACTATTGC--TGATGATACAGCTAT-----------------------------------
droBia1 scf7180000302162:9003-9136 + ATAT----CGGGAATACTGCACTGCGCTATTTCTTGACGTTGCACAGGCTTTCGATCGAGTCTGGCTTGATGGCCTTATGCATAAAATCAGAACTATTCTGCCGGAAAACACTCACAGAATACTTGAATCGTACCTTT-------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415452:12123-12256 + ATAT----CAAGAATACTGCAGTGCGGTATTCCTTGATGTTGCACAGGCTTTCGATCGAGTCTGGCTTGATGGCCTTATGCACAAAATCAGAACTATTCTGCCGGAAAACACTCACATGATACTTGAATCGTACCTTT-------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409652:11377-11507 - AAAA----CGAGAGTACTGTACTGCCATATTTTTAGATGTTACTCAAGCATTTGATAGAGTTTGTCTAGAAGGTCTAATGTACAAGATCAAGACAAT---GCCCTACAGCACTCACAAGATTTTAGAGTCTTACCTTT-------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:21612784-21612981 - ATAT----CGCGAATACTGTACAGCAGTATTTTTAGACGTATCCCAAGCATTCGACAAAGTCTGGCTCGACGGCCTAATGTTTAAAATTAAAACATCCCTACCCGAAAGCACACACAAACTTCTAAAGTCTTACCTCTATGACAGAAAG--TTTGCAGTGCGGTGCAACACTGCCACTTCCACTGTTCATACAA---TTGATTTTTC----------------------------------------------------------
droSim2 2r:502135-502305 + AAAA----CGCGAATAATGCAGAGGAATCTTTCTGGATGTCTCCCAGGCATTTGACAAGGTCTGGCTAAATGGTTTAATGTTTAAAATCAAAGCAATGCTCCCTCAAAACACCCACAAACTCTTGAAGTCGGAACTCTACAATAGGGCC--TTTGCTGTGTGATGTAACTCTGATAT----------------------------------------------------------------------------------------
droSec2 scaffold_43:3879-4036 - GCAC----AAGTAATATTGCACAGCCGAGTTCCTCGACGTCACCCAAGCATTCGACCGAGTGTGGTTGTAGGGCCTTATGTATAAAATAAAAACACTCCTACCACCAAATACACACAAGCTGCTTGAATCTTATCTTTTTAAAAGAAAA--TTTCCTGTAAGGT-----------------------------------------------------------------------------------------------------
droYak3 v2_chr2L_random_028:425170-425303 + AAAA----CGGGAATACTGCTCTGCGATATTTCTAGATGTTTCGCAGGCATTCGACAGAGTTTGGCTGGACGGTCTGATGTACAAAATCAAAAGAACTCTTCCAAACAACACTCATAAACTGCTAGAATCGTACCTCT-------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_1404:3588-3721 - ACAG----CGCGAGTACTGTTCGGCAATCTTTCTGGATGTTGCACAAGCATTCGATCGAGTCTGGCTGGACGTTCTTATGTACAAAATAACAAAGCTGTTACTTCAAAATACGCACAATCTGCTTGAATCCTATCTCT-------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ACTA----AAAGAATACTGTGCGGCTGTCTTTCTCGACGTTGCCCAGGCTTTCGATAGAGTTTGGCTGGAGGGTCTGATGTTCAAAATCCGGCACAAACTGCCACAGTACACACACAAACTCATGGAATCTTACCTTTT-----GTAAC--CTTCCTATTCGGTTTCTCGTTGCGCGCCATAATTTTTATATAA---TCGGTTCTCCTATCACAGCGACGATAAAGCTATCGATAACCAAAAAGAAGGCGGTAGGTGAATTGCAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................CTGTGCGGCTGTCTTTCTCGA....................................................................................................................................................................................................................................21200.5511011000
..........................................................................................................................................................................................................TCTCCTATCACAGCGACGATAAAGC......................................25200.40804040
.................................................................................................................................................TAAC--CTTCCTATTCGGTTTCTCGTTG............................................................................................26200.30605010
....................................................CGATAGAGTTTGGCTGGAGG.................................................................................................................................................................................................20200.30606000
...............................................................................................................................................................................................................TATCACAGCGACGATAAAGCTATCGA................................26200.25505000
..............TACTGTGCGGCTGTCTTTCTCG.....................................................................................................................................................................................................................................22200.20404000
ACTA----AAAGAATACTGTGCGGCTGT.............................................................................................................................................................................................................................................24200.20404000
.................................................................................................................................................................................................................TCACAGCGACGATAAAGCTATCGAT...............................25200.20400040
.............................................................TTGGCTGGAGGGTCTGATGTT.......................................................................................................................................................................................21200.15303000
.........................................................................................................................................................................................................TTCTCCTATCACAGCGACGATAAAGC......................................26200.15301020
.........................................................GAGTTTGGCTGGAGGGTCTG............................................................................................................................................................................................20200.15303000
..........................................................................................................................................T-----GTAAC--CTTCCTATTCGGTTTCTCGT..............................................................................................26200.15301020
..................................................................................................................................................AAC--CTTCCTATTCGGTTTCTCGTTG............................................................................................25200.15303000
.......................GCTGTCTTTCTCGACGTTGCCC............................................................................................................................................................................................................................22200.15303000
.................................................................................................................................................................................................................TCACAGCGACGATAAAGCTATCGA................................24200.10200020
..TA----AAAGAATACTGTGCGGCTGTCTT..........................................................................................................................................................................................................................................25200.10202000
..........................................................................................................................................................................................TTATATAA---TCGGTTCTCCTATCACAG..................................................26200.10201010
.................................................................................................................CACAAACTCATGGAATCTTAC...................................................................................................................................21200.10202000
.............................................................................................................................................................................................TATAA---TCGGTTCTCCTATCAC....................................................21200.10202000
..................................CGACGTTGCCCAGGCTTTCGA..................................................................................................................................................................................................................21200.10202000
.................TGTGCGGCTGTCTTTCTCGACGTTG...............................................................................................................................................................................................................................25200.10200020
.......................................TTGCCCAGGCTTTCGATAGAGTT...........................................................................................................................................................................................................23200.10200020
...............................................................................................................................................................................................................TATCACAGCGACGATAAAGCTATCG.................................25200.10200020
..........................................................................................................................................................................................................TCTCCTATCACAGCGACGATAAAGCTAT...................................28200.10202000
...................................................................................................TGCCACAGTACACACACAAACTCATGGA..........................................................................................................................................28200.10202000
...A----AAAGAATACTGTGCGGCTGTCTTTC........................................................................................................................................................................................................................................26200.10202000
........................CTGTCTTTCTCGACGTTGCCCAGG.........................................................................................................................................................................................................................24200.10202000
........AAAGAATACTGTGCGGCTGTC............................................................................................................................................................................................................................................21200.10220000
.........AAGAATACTGTGCGGCTGTCT...........................................................................................................................................................................................................................................21200.05100001
.............................................................................................................................................................................................................................TAAAGCTATCGATAACCAAAAAGAAG..................26200.05100010
...........GAATACTGTGCGGCTGTCTTTCTC......................................................................................................................................................................................................................................24200.05101000
...............................................................................................................CACACAAACTCATGGAATCTTA....................................................................................................................................22200.05101000
.............................................................................................................CACACACAAACTCATGGAAT........................................................................................................................................20200.05101000
............................................................................................................................................................................................................TCCTATCACAGCGACGATAAAGCTAT...................................26200.05100010
...............................................................................................................................................................................................................................................AAAAGAAGGCGGTAGGTGAATT....22200.05101000
...............................................................................................................................................................................................TAA---TCGGTTCTCCTATCACAGCGACGA............................................27200.05101000
.................................TCGACGTTGCCCAGGCTTTCGA..................................................................................................................................................................................................................22200.05101000
.............................................................................................................CACACACAAACTCATGGAATC.......................................................................................................................................21200.05101000
...............................................................................................................................................................................................TAA---TCGGTTCTCCTATCACAGC.................................................22200.05101000
...............................................................................................................................................................................................................................................AAAAGAAGGCGGTAGGTGAATTGCA.25200.05100010
.......................................................................................................ACAGTACACACACAAACTCATGGG..........................................................................................................................................24200.05101000
.............................................AGGCTTTCGATAGAGTTTGGCT......................................................................................................................................................................................................22200.05100100
.......................................................TAGAGTTTGGCTGGAGGGTC..............................................................................................................................................................................................20200.05101000
.......................................................................................................................................................................................................................................GATAACCAAAAAGAAGGCGGTAGGT.........25200.05100100
........................................................................................................................................................TTCCTATTCGGTTTCTCGTTGCGCGC.......................................................................................26200.05101000
................................................................................................................................................................CGGTTTCTCGTTGCGCGC.......................................................................................18200.05110000
...........................................................................................................................................................CTATTCGGTTTCTCGTTGCGCGC.......................................................................................23200.05100010
..............TACTGTGCGGCTGTCTTTCTC......................................................................................................................................................................................................................................21200.05101000
.........................................................................................................................................................................................................TTCTCCTATCACAGCGACGAT...........................................21200.05101000
..................GTGCGGCTGTCTTTCTCGAC...................................................................................................................................................................................................................................20200.05101000
.......................GCTGTCTTTCTCGACGTTGCCCAC..........................................................................................................................................................................................................................24200.05101000
...........................................................................................................................................................................................TATATAA---TCGGTTCTCCTATCACAGCG................................................27200.05100010
...............................................................................................................................................................................................TAA---TCGGTTCTCCTATCACAGCGACG.............................................26200.05101000
........................................................................................................................................................TTCCTATTCGGTTTCTCGTTGCGCGCC......................................................................................27200.05101000
...............................................................................................................................................................................................................TATCACAGCGACGATAAAGCTATCGATA..............................28200.05101000
........................................................................................................................................................TTCCTATTCGGTTTCTCGTTGCGCG........................................................................................25200.05101000
.................TGTGCGGCTGTCTTTCTCGACG..................................................................................................................................................................................................................................22200.05100010
.............................................................................................................................................................................................TATAA---TCGGTTCTCCTATCACAGCGACGA............................................29200.05101000
...................................................................................................TGCCACAGTACACACACAAACTCATG............................................................................................................................................26200.05101000
................................................................................................................................................................................................AA---TCGGTTCTCCTATCACAGCGACGA............................................26200.05100010
droVir3
--------------TACTGTGTGGCGCCTTTTGTCAAAGTCAACCAGGCATTTGATCGTATTTGGCACCTAGGGCTGCTGGCAAAATTGAAACGCGGTCTGCCATCGTCCTACTTCAGTCTAATCCGATCCTACTT---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................CCAGGCATTTGATCGTATTTG.........................................................................................................................................................................................................2112.002000002000000000000000000000000000000000000000000000000000000000
.............................................................................................................CTACTTCAGTCTAATCCGATC.......................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................AAATTGAAACGCGGTCTGCCA.................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
.......................................................................................TGAAACGCGGTCTGCCATCGTC............................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
.............................................AGGCATTTGATCGTATTTGGC.......................................................................................................................................................................................................2120.501000000000000000000000001000000000000000000000000000000000000000
.............................................AGGCATTTGATCGTATTTGGCACCTA..................................................................................................................................................................................................2620.501100000000000000000000000000000000000000000000000000000000000000
...................................................TTGATCGTATTTGGCACCTAT.................................................................................................................................................................................................2120.501000000000000000000000000000000000100000000000000000000000000000
droMoj3
CAAC----AAAAAGCACTGTAATGCCATTTTTCTGGACATCGAACAGGCCTTCGATAGGGTATGGCACCCAGGTCTGCTGCAGAAGATTAAGGAACAGCTGCCCTCGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................AGAAGATTAAGGAACAGCTGCCC.................................................................................................................................................................2323.507400030
.................................TGGACATCGAACAGGCCTTCGA..................................................................................................................................................................................................................22102.402410000140
.................................TGGACATCGAACAGGCCTTCGATAGG..............................................................................................................................................................................................................26101.80181800000
.................................TGGACATCGAACAGGCCTTCGATAGGG.............................................................................................................................................................................................................2791.56141300010
.................................................................................AGAAGATTAAGGAACAGCTGCCCTCGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------2921.503200001
.................................................................................AGAAGATTAAGGAACAGCTGCCCTC...............................................................................................................................................................2521.503300000
.................................TGGACATCGAACAGGCCTTCGATAG...............................................................................................................................................................................................................25101.30131300000
.................................................................................AGAAGATTAAGGAACAGCTGC...................................................................................................................................................................2121.002010010
.................................................................................AGAAGATTAAGGAACAGCTGCCCTCG..............................................................................................................................................................2621.002200000
.................................TGGACATCGAACAGGCCTTCGAT.................................................................................................................................................................................................................23101.0010910000
.................................................................................AGAAGATTAAGGAACAGCTGCCCT................................................................................................................................................................2421.002200000
.................................TGGACATCGAACAGGCCTTCGATAGGGT............................................................................................................................................................................................................2890.898600002
.................................TGGACATCGAACAGGCCTTCGATA................................................................................................................................................................................................................24100.808600020
..................................................................................GAAGATTAAGGAACAGCTGCCCTCG..............................................................................................................................................................2520.501100000
..................................................................................GAAGATTAAGGAACAGCTGCCCTCGCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------2820.501000001
...................................................................................AAGATTAAGGAACAGCTGCCC.................................................................................................................................................................2120.501100000
..................................................................................GAAGATTAAGGAACAGCTGCCCTCGC.............................................................................................................................................................2620.501100000
.....................................................................................GATTAAGGAACAGCTGCCCTCGC.............................................................................................................................................................2320.501000010
..................................................................................GAAGATTAAGGAACAGCTGCCCT................................................................................................................................................................2320.501100000
.................................TGGACATCGAACAGGCCTTCG...................................................................................................................................................................................................................21100.404300001
..................................GGACATCGAACAGGCCTTCGAT.................................................................................................................................................................................................................22100.404400000
..................................GGACATCGAACAGGCCTTCGATAGGG.............................................................................................................................................................................................................2690.222200000
.................................TGGACATCGAACAGGCCTTCGAC.................................................................................................................................................................................................................23100.202000020
..................................GGACATCGAACAGGCCTTCGATAG...............................................................................................................................................................................................................24100.202200000
................................CTGGACATCGAACAGGCCTTCGA..................................................................................................................................................................................................................23100.101100000
..................................GGACATCGAACAGGCCTTCG...................................................................................................................................................................................................................20100.101100000
..................................GGACATCGAACAGGCCTTCGA..................................................................................................................................................................................................................21100.101100000
..................................GGACATCGAACAGGCCTTCGATT................................................................................................................................................................................................................23100.101100000
..........................ATTTTTCTGGACATCGAACAGGC........................................................................................................................................................................................................................23100.101100000
..................................GGACATCGAACAGGCCTTCGATAGG..............................................................................................................................................................................................................25100.101100000
.................................TGGACATCGAACAGGCCTTCGATT................................................................................................................................................................................................................24100.101100000
...................................GACATCGAACAGGCCTTCGATAA...............................................................................................................................................................................................................23110.091100000
.......................................TCGAACAGGCCTTCGATAGG..............................................................................................................................................................................................................20110.091100000
droGri2
AAAT----AAGCAGTACAGCTCTGCCGTCTTCCTGTATATCCAGCAAGCATTTGATCGCGTATGGCATGATGGCCTGCTTTTTAAGCTTAAGTCCCTGCTACCATCAGCGCAGTATTTACTGCTCAGGTCTTACCTGCTTGGCCGTTCT--GT-----------------------------------------------------T----------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................GTCCCTGCTACCATCAGCGCAGTATT....................................................................................................................................................26150.07110
....................................................TGATCGCGTATGGCATGATGGCC..............................................................................................................................................................................................23200.05101
...........................................GCAAGCATTTGATCGCGTATGGCATC....................................................................................................................................................................................................26200.05110
........................................CCAGCAAGCATTTGATCGCG.............................................................................................................................................................................................................20200.05110
dp5
CAGA----CGAGAATATTGCTCCACTGTCTTCTTAGATGTCGGCCAAGCTTTCGACCGCATTTAGCTGGATGGCTTTATTAAAAAAATCAGAATATTACTTCCACAGAACACCAATAAAATATTGGAGTCATACCT---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAGA----CGAGAATATTGCTCCACTGTCTTCTTAGATGTCGGCCAAGCTTTCGACCGCATTTAGCTGGATGGCTTAATTAAAAAAATCAGAATATTACTTCCACAGAACACCAATAAAATATTGGAGTCATACCT---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACAG----CGAGAATACTGTAGCGCTATTTTTCTCGACGTATCTTAAGCTTTCGACCGAGTTTGGCTTAATAGACTCATGCACAAAATTAAAACGTATTTCCAAACATACACCCACATTCTACTGTAACTTTAGTTCAAC---ATATAA--TCTT-TATTGTGTTTTTGGGTTTTTGCCAT-------------------------------------------------------------------------GTAAACTTTATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................TAAGCTTTCGACCGAGTTTGGC.......................................................................................................................................................................................................2260.171100000
............................................TAAGCTTTCGACCGAGTTTGGCT......................................................................................................................................................................................................2360.171010000
..........................................................................................................................................................T-TATTGTGTTTTTGGGTTTTTG........................................................................................22170.061100000
............................................................................................................................................................TATTGTGTTTTTGGGTTTTTGCCAT-------------------------------------------------------------------------G..........26170.061100000
........................................................................GACTCATGCACAAAATTAAAACGTATT......................................................................................................................................................................27200.051100000
...G----CGAGAATACTGTAGCGCTATTTTTCTC......................................................................................................................................................................................................................................28200.051100000
.....................................................................................................................................................................TTTGGGTTTTTGCCAT-------------------------------------------------------------------------GTAAACTTTAT27200.051100000
droBip1
ACAT----CGAAAATACTGCAGAGCTATTTTTCTCGGCGTATCTGAAGCCCTCGATCGTGTTTGGCTAAATGGACTCATGCACAAAATTAAAACCAATCTGCCAACATACACTCTCAAGTAACTTGAGTCGTTCCCCTATGATAGGGTA--TTATCATTGAGATGCATCGCATCCCA---------------------TAATTTTTA----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ACAT----CGAGAATATTGCAGCGCAATATTTCTAGACGTTTCTCAAGCTTTCGACCGCGTCTGGCTCAATGGCCTCATGCACAAAACTAAAACACTCTTGCCGGCATACACACACAAATTACTTGAGTCGTATCTCT-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AAAT----CAAGAGTACTGTTCCGCAGTTTTTCTGGATGT----CGGGCCTTCGACCACGTTTGGTTAGACAGCTTGATTTATAAAATTCAAAATTTGCTACCACAGAACACCCACAAAATACTGGAGACATATCTTTTTT----------TTTCTTG---------------------------------------TTTTTTTTTT----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAGAAATTTTAGAGTTTTTCTCTACTGTTTTTCTGGATGTTTCCCAGGCTTTCGAGCGCGTTTGGCTGGTCGGCTTAATTCATAAAATTAAAATAATTCT-CAACAGAGCACACATAAAATATTGGAGTCTTATTTACC-----GCAATTATTTACGATTC---------------------------------------------G----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAAA----CGAGAGTACTGTACTGCCATATTTTTAGACGTCTCTCAAGCATTTGATAGAGTTTGGCTAGAAGGTCTAAT---CAAGATCAAGACAATGCTCCCCTACAACACCCATAAGCTTTTAGAGTCTTACCTCTACGACAGAAAA--TTTGCTGTTCGATGCAACACTGCTAT---------------AACTGACGATTTTACTATTGC--TGATGATACAGCTAT-----------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATAT----CGGGAATACTGCACTGCGCTATTTCTTGACGTTGCACAGGCTTTCGATCGAGTCTGGCTTGATGGCCTTATGCATAAAATCAGAACTATTCTGCCGGAAAACACTCACAGAATACTTGAATCGTACCTTT-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ATAT----CAAGAATACTGCAGTGCGGTATTCCTTGATGTTGCACAGGCTTTCGATCGAGTCTGGCTTGATGGCCTTATGCACAAAATCAGAACTATTCTGCCGGAAAACACTCACATGATACTTGAATCGTACCTTT-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AAAA----CGAGAGTACTGTACTGCCATATTTTTAGATGTTACTCAAGCATTTGATAGAGTTTGTCTAGAAGGTCTAATGTACAAGATCAAGACAAT---GCCCTACAGCACTCACAAGATTTTAGAGTCTTACCTTT-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
ATAT----CGCGAATACTGTACAGCAGTATTTTTAGACGTATCCCAAGCATTCGACAAAGTCTGGCTCGACGGCCTAATGTTTAAAATTAAAACATCCCTACCCGAAAGCACACACAAACTTCTAAAGTCTTACCTCTATGACAGAAAG--TTTGCAGTGCGGTGCAACACTGCCACTTCCACTGTTCATACAA---TTGATTTTTC----------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
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...................................................TCGACAAAGTCTGGCTCGAC..................................................................................................................................................................................................20200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000
.......................................................................................................................................TCTATGACAGAAAG--TTTGCAG...........................................................................................................21200.4080000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TTACCTCTATGACAGAAAG--TTTGCAG...........................................................................................................26200.4080000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000050000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................TAAAATTAAAACATCCCTACCCGA...............................................................................................................................................................24200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TTTTTAGACGTATCCCAAGCATTCGAC.................................................................................................................................................................................................................27200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TAT----CGCGAATACTGTACAGCA...............................................................................................................................................................................................................................................21200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
...............................................GCATTCGACAAAGTCTGGCTCGAAT.................................................................................................................................................................................................25200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TAAAACATCCCTACCCGAAAGC...........................................................................................................................................................22200.3570000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AACACTGCCACTTCCACTGTTCA............................................................................23200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................CAGAAAG--TTTGCAGTGCGGTGC...................................................................................................22200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TCTAAAGTCTTACCTCTATGA...........................................................................................................................21200.3570000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000
.....................................................................................AATTAAAACATCCCTACCCGA...............................................................................................................................................................21200.3570000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CTTACCTCTATGACAGAAAG--TTTGCAT...........................................................................................................27200.3570000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TCGACAAAGTCTGGCTCGACGGCCTAA...........................................................................................................................................................................................27200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000200000000000000000000000000
......................................................ACAAAGTCTGGCTCGACGGCCT.............................................................................................................................................................................................22200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000002000000000000000000000004000000000000000000000000000000000
..............................................................................................................................................................TGCGGTGCAACACTGCCACTTCCACTG................................................................................27200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TTCGACAAAGTCTGGCTCGACGG................................................................................................................................................................................................23200.3570000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AGCATTCGACAAAGTCTGGCTT.....................................................................................................................................................................................................22200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AACACTGCCACTTCCACTGT...............................................................................20200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000240000000000000000000000000000000000000000000000000000
.........................................................................................................................................TATGACAGAAAG--TTTGCAGTGC........................................................................................................22200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ACACTGCCACTTCCACTGTTCATAC.........................................................................25200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CATTCGACAAAGTCTGGCTCGACGG................................................................................................................................................................................................25200.3060000000000000000000000010000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
....................................................CGACAAAGTCTGGCTCGACGGC...............................................................................................................................................................................................22200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003200000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........CGCGAATACTGTACAGCAGT.............................................................................................................................................................................................................................................20200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000500000000000000000000000000000000000
.....................................................................................................CCCGAAAGCACACACAAACTTCTAAAG.........................................................................................................................................27200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GCAACACTGCCACTTCCACTGTTCA............................................................................25200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TTCTAAAGTCTTACCTCTATG............................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000
..........................................................................................................................CTAAAGTCTTACCTCTATGA...........................................................................................................................20200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000
.....................................................................................................................AACTTCTAAAGTCTTACCTCT...............................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................AAG--TTTGCAGTGCGGTGCA..................................................................................................19200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CCAAGCATTCGACAAAGTCTGG........................................................................................................................................................................................................22200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000200000000000000000000000000000000000
..............................................................................................................................................................TGCGGTGCAACACTGCCACTTCCACT.................................................................................26200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................AGTCTGGCTCGACGGCCTAAT..........................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TATCCCAAGCATTCGACAAAGTCTGGC.......................................................................................................................................................................................................27200.3060000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CGAAAGCACACACAAACTTCTA............................................................................................................................................22200.3060000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CACAAACTTCTAAAGTCTTAC...................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TATTTTTAGACGTATCCCAAGCA.......................................................................................................................................................................................................................23200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................ATCCCAAGCATTCGACAAAGTCTGGC.......................................................................................................................................................................................................26200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................AAGTCTTACCTCTATGACAGAAAG--TTT...............................................................................................................27200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................ACCTCTATGACAGAAAG--TTTGCAGT..........................................................................................................25200.2550000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TGCGGTGCAACACTGCCACTTCC....................................................................................23200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CGACAAAGTCTGGCTCGACGGT...............................................................................................................................................................................................22200.2550000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CTTACCTCTATGACAGAAAG--TT................................................................................................................22200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GCATTCGACAAAGTCTGGCT......................................................................................................................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TAAAGTCTTACCTCTATGACAGAAAG--TT................................................................................................................28200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TCTATGACAGAAAG--TTTGCAGTG.........................................................................................................23200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000200000000000000000000000000000000000
....................................................................................................................................ACCTCTATGACAGAAAG--T.................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................ACTTCCACTGTTCATACAA---TT..................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000
...............................................GCATTCGACAAAGTCTGGCTCGC...................................................................................................................................................................................................23200.2550000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000100000000000000000000000000
..............................................AGCATTCGACAAAGTCTGGCT......................................................................................................................................................................................................21200.2550000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AGTCTTACCTCTATGACAGAA......................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CAAGCATTCGACAAAGTCTGGT.......................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..............................................................................................ATCCCTACCCGAAAGCACACAC.....................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000
..................GTACAGCAGTATTTTTAGACG..................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000010000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CCTCTATGACAGAAAG--TTTGC.............................................................................................................21200.2040000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CCTCTATGACAGAAAG--TTTGCAGT..........................................................................................................24200.2040000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AGAAAG--TTTGCAGTGCGGTGCA..................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000100000000000000000000000000000000000
................................TTAGACGTATCCCAAGCAT......................................................................................................................................................................................................................19200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TGCAGTGCGGTGCAACACTG............................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TTAAAACATCCCTACCCGAAA.............................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
.......................................................CAAAGTCTGGCTCGACGGCCTA............................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TATCCCAAGCATTCGACAAAGT............................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TCTATGACAGAAAG--TTTGCAGTGCGG......................................................................................................26200.2040000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................GAAAG--TTTGCAGTGCGGTGCT..................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000
.......................................................CAAAGTCTGGCTCGACGG................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TTTTTAGACGTATCCCAAGCAT......................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000
.................................TAGACGTATCCCAAGCATTC....................................................................................................................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022000000000000000000000000000000000
..................................................................................TAAAATTAAAACATCCCTACCCGAAAGCA..........................................................................................................................................................29200.2040000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TCGACAAAGTCTGGCTCGACGGC...............................................................................................................................................................................................23200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GCATTCGACAAAGTCTGGCTCGATT.................................................................................................................................................................................................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................AAAGTCTTACCTCTATGACAGA.......................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.......................................................................................................................................TCTATGACAGAAAG--TTTGCAGTGCGGT.....................................................................................................27200.2040000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GCATTCGACAAAGTCTGGCTCGACGGA...............................................................................................................................................................................................27200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AGCAGTATTTTTAGACGTATCC.............................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000
...................................................................................................TACCCGAAAGCACACACAAACTTCT.............................................................................................................................................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GCATTCGACAAAGTCTGGCTCGAT..................................................................................................................................................................................................24200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CAAGCATTCGACAAAGTCTGT........................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000000000000000001000000000000000000000000000000000
...............................................................................................TCCCTACCCGAAAGCACACA......................................................................................................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000
...........................................................................................................AGCACACACAAACTTCTAAAG.........................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000
............................................................................................................................................GACAGAAAG--TTTGCAGTGCGGTT....................................................................................................23200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000
...............................................GCATTCGACAAAGTCTGGCTCGAATC................................................................................................................................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GCATTCGACAAAGTCTGGCTCGACGT................................................................................................................................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GCATTCGACAAAGTCTGGCTCGACT.................................................................................................................................................................................................25200.2040000000000000000000000000000000000002000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TACCCGAAAGCACACACAAACTTCTA............................................................................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................CACTTCCACTGTTCATACAA---T...................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000001000000000000000000000000000000000000
...............................................GCATTCGACAAAGTCTGGCTCGACGGCCT.............................................................................................................................................................................................29200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CAAAGTCTGGCTCGACGGCCTAATG.........................................................................................................................................................................................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CATTCGACAAAGTCTGGCTCGACGGT...............................................................................................................................................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................ACAAAGTCTGGCTCGACGGCCA.............................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000
............................................CAAGCATTCGACAAAGTCT..........................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................ACGTATCCCAAGCATTCGACT................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
droSim2
AAAA----CGCGAATAATGCAGAGGAATCTTTCTGGATGTCTCCCAGGCATTTGACAAGGTCTGGCTAAATGGTTTAATGTTTAAAATCAAAGCAATGCTCCCTCAAAACACCCACAAACTCTTGAAGTCGGAACTCTACAATAGGGCC--TTTGCTGTGTGATGTAACTCTGATAT----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................TGAAGTCGGAACTCTACAATAGGGC.....................................................................................................................2520.50100000000100000000
.......................................................................................................TCAAAACACCCACAAACTCTTGAAGT........................................................................................................................................2620.50100000010000000000
.................................................................................................................CACAAACTCTTGAAGTCGGAACTCTAC.............................................................................................................................2720.50100000001000000000
droSec2
GCAC----AAGTAATATTGCACAGCCGAGTTCCTCGACGTCACCCAAGCATTCGACCGAGTGTGGTTGTAGGGCCTTATGTATAAAATAAAAACACTCCTACCACCAAATACACACAAGCTGCTTGAATCTTATCTTTTTAAAAGAAAA--TTTCCTGTAAGGT-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAAA----CGGGAATACTGCTCTGCGATATTTCTAGATGTTTCGCAGGCATTCGACAGAGTTTGGCTGGACGGTCTGATGTACAAAATCAAAAGAACTCTTCCAAACAACACTCATAAACTGCTAGAATCGTACCTCT-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................CACTCATAAACTGCTAGAATCGTACC..................................................................................................................................2670.29200200000000
...................................................................................................................TAAACTGCTAGAATCGTACCTCT-------------------------------------------------------------------------------------------------------------------------------23100.20201100000000
................................................................................................................TCATAAACTGCTAGAATCGTACCT.................................................................................................................................24100.10101000000000
...............................................GCATTCGACAGAGTTTGGCTGGACGG................................................................................................................................................................................................26120.08101000000000
...............................................GCATTCGACAGAGTTTGGCTGGA...................................................................................................................................................................................................23120.08101000000000
...............................................GCATTCGACAGAGTTTGGCTGGAC..................................................................................................................................................................................................24120.08101000000000
..AA----CGGGAATACTGCTCTGCGATATTTC........................................................................................................................................................................................................................................27130.08100100000000
..................................................TTCGACAGAGTTTGGCTGGACGG................................................................................................................................................................................................23130.08100100000000
...............................................GCATTCGACAGAGTTTGGCTG.....................................................................................................................................................................................................21130.08101000000000
..............TACTGCTCTGCGATATTTCTAGATG..................................................................................................................................................................................................................................25140.07101000000000
.................TGCTCTGCGATATTTCTAGATGTT................................................................................................................................................................................................................................24140.07101000000000
.....................................TGTTTCGCAGGCATTCGACAGAGTT...........................................................................................................................................................................................................25150.07101000000000
.........................GATATTTCTAGATGTTTCGCAGGCAT......................................................................................................................................................................................................................26170.06101000000000
...............................TCTAGATGTTTCGCAGGCATTCGA..................................................................................................................................................................................................................24170.06101000000000
...............................................GCATTCGACAGAGTTTGGCT......................................................................................................................................................................................................20170.06101000000000
droEre2
ACAG----CGCGAGTACTGTTCGGCAATCTTTCTGGATGTTGCACAAGCATTCGATCGAGTCTGGCTGGACGTTCTTATGTACAAAATAACAAAGCTGTTACTTCAAAATACGCACAATCTGCTTGAATCCTATCTCT-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:47 PM