dwi_3035

CDS [Dwil\GK22387-cds]; exon [dwil_GLEANR_5605:2]; CDS [Dwil\GK22387-cds]; exon [dwil_GLEANR_5605:1]; intron [Dwil\GK22387-in]

Name	Class	Family	Strand
(CCG)n	Simple_repeat	Simple_repeat	+

##################################################------------------------------------------------------------------------------------################################################## TGACAGACTCCACCCCAGTACTGATCAATGGCAATGCTGGAGGAAGCACTGCAACAACCCCAACATCGACAGCAGCAGCAACATCGGCGGCGGCGGTGGCAGCGGCAGCGGCAACCTCCCTGGGAAAGCTTCAGAAGAAGCCCGAGGATATGTGCGGGCAATTGGATGGGGGACATTCGGCCTC ************************************************..........................(((....((((.((.((..((.((.......)).))..)).))))))....)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	M020 head	V118 embryo	V117 male body	V119 head
............CCGCAGTACGGACCAATGGC........................................................................................................................................................	20	3	3	1.33	4	2	2	0	0	0
..........................................................................................................AGCGGCAACCTCCCTGGGA...........................................................	19	0	1	1.00	1	0	0	1	0	0
...................ACTGATCAATGGCAATGC...................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0
...................ACTGATCAATGGCAATGCT..................................................................................................................................................	19	0	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................AGGGGGAACATTCGGCCT.	18	2	1	1.00	1	1	0	0	0	0
.........................................................................................GCGGCGGTGGCAGCGGCACC...........................................................................	20	1	4	0.25	1	0	0	1	0	0
.................................................................................CTTCGGCGGCGGCGGTGGC....................................................................................	19	1	5	0.20	1	0	0	0	0	1
..............................TCAATGCTGGATGAAGCCCT......................................................................................................................................	20	3	8	0.13	1	1	0	0	0	0
..........................AATGGCAATGCGGGATGA............................................................................................................................................	18	2	15	0.07	1	0	0	0	1	0
..........................................................................GCACCAACTTCGGAGGCGGC..........................................................................................	20	3	15	0.07	1	0	0	0	1	0
................................................................................................................................CTACTGAAGAAGCACGAGG.....................................	19	3	16	0.06	1	0	0	0	1	0
.......................ATCAATGCCAAGGCTGGAGC.............................................................................................................................................	20	3	19	0.05	1	0	0	0	0	1

ACTGTCTGAGGTGGGGTCATGACTAGTTACCGTTACGACCTCCTTCGTGACGTTGTTGGGGTTGTAGCTGTCGTCGTCGTTGTAGCCGCCGCCGCCACCGTCGCCGTCGCCGTTGGAGGGACCCTTTCGAAGTCTTCTTCGGGCTCCTATACACGCCCGTTAACCTACCCCCTGTAAGCCGGAG ************************************************..........................(((....((((.((.((..((.((.......)).))..)).))))))....)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V117 male body	V119 head	M020 head
..................................ACTACCTGCTTCGTGTCGTTGTT...............................................................................................................................	23	3	3	0.33	1	1	0	0	0
.............................................CGTCACGATGTTGGGGTT.........................................................................................................................	18	2	3	0.33	1	0	1	0	0
..............................................................................................................................TCAAAGTCTTCTTCGGCCTG......................................	20	3	8	0.25	2	2	0	0	0
......TGAAGTGGGGTCACGACT................................................................................................................................................................	18	2	5	0.20	1	1	0	0	0
................................................................................................................................AAAGTCTTCTTCGGCCTGC.....................................	19	3	11	0.09	1	0	0	0	1
.....................................ACCTCGTCCGTGACGTTGT................................................................................................................................	19	2	14	0.07	1	1	0	0	0
.........AGTGGGGTCATGACTGAT.............................................................................................................................................................	18	3	16	0.06	1	0	0	1	0
.................................................AAGTTGTTCGGGTTGTGGC....................................................................................................................	19	3	20	0.05	1	1	0	0	0
.....CTGTGGTGGGGTCATGTG.................................................................................................................................................................	18	3	20	0.05	1	0	0	1	0
.............................................CCTCACGATGTTGGGGTTG........................................................................................................................	19	3	20	0.05	1	0	0	1	0
........................................................AGAGGTTGTAGCTGTCGT..............................................................................................................	18	2	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004921:3697287-3697470 -	dwi_3035	TGACAG-ACTCCACCCCAGTACTGATCA-----------------------------------------------------------------------------------------------------------------------------------------ATGGCAATGCTGG---AGGA----------------------------------------------------------AGCACTGCAACAACCCCAACATCGA-----CA--GCA---GCAGCAACATCGGCGGCGG-----------------CG------------GT------------------GGCA-----GC---G------GCAGCG-----------------------------------G----------------------------------CAACCTCCCTGGGAAAGCTTCAGAAG-------------AAGCCCGAGGATATGTGCGGGCA--------------------------------------ATT------------------------------------------------------------------------------------------------------------------------------------------------------GGATGGGGGA--------CATTCGGCCTC
droVir3	scaffold_12928:3171607-3171790 +		TGGCTG-CCGCCTACT--ATCAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---GCAGCAACAGCATCAGCAG-----------------CA---------------ACATC---AGC--------------------------------A-----------------------------------GCAACATGCC---GCTGCACAACAGCAACAGC---TGGGCAAT--ATTTCACCATTGCCTCCGCTGGGCGGCACACACTCGACGAGCTCGTCGGCC---------------------------------------AGCTCGAC------A---------------------------------------------------------------------------------------------------------------------------GCTACA---TC---------------------ACAGCCGGCGTC
droMoj3	scaffold_6500:26694503-26694696 +		TCGCAT-ACGCCCACGCAGTCGGAGTCT-----------------------------------------------------------------------------------------------------------------------------------------GCGGAAACGCTGG---CCCA----------GG---------------------------AGC------TGCGCC------------------------GACTGC----------A---GACGGAG------------CGTGCCAAGTCGGGCGACG------ACAGCAGCGA--AG---A---------GC-------------------------------------A------------GCA---GCAGCAGGAGGAGCAACTGGCGCGAC-AGCT------------GGA--GGCAGAGG-CCGA-G------------------------------------------------------------------------------------------GAGTCCAAGT---------------------------------------------------------------GCATATTGCAGCTGAAGAAG--------------------ACG-------------------------------------------CTTGCCTC
droGri2	scaffold_15203:6887174-6887368 +		CAACAA-ATCT--ACGCCAG-------------------------------------------------A--------TACTCAACAATCT----------AAACATTTTC------------------GGC--------------------------------------------------------------------------------------------AGC------AG---CACTAAGCAC---------------AGCA----------------ACAACAACAGCAACAACAG-----------------CA------GCAATAGCAATAATAGCAACAGC---AATG-----GCC---------ACAGC--------------A---------------------GC------------------AAC--------------------------------------CACTTGAC--------------GGCA---------------------------------------------------------------------------------------------------------GCA--------ACTGGGTC------------------------------GGGTGGATCAA-----GTGTTGCCGGGTCGACGCTGC------------------------ATCTGATGCAGCATC
dp5	XR_group6:6489296-6489469 +		TGGCAA-CAGTG------------------------GCAC----------------------------------------------------------------------------------CT-------CAACAGCAACAGCAGCAGCAGCAG----------------------------GC----------------------------------------------------------GGCACCGCAGCACCATCAACAACAA-----CA--G-----------A------------CATCGCCAGTGGTGATGCC------ACAGCAGCAACAGCCCC---------AAC-----------AGCA---GCAGCAGC-----------AA------------CT---ACCCC------------------AGC-AGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGACCAGCTACC----------------------------------------------------------------AGGA-TATG---CA----ACA------------------TCAGGCAC
droPer2	scaffold_2439:1021-1222 -		CGGCTG-TACA--------------------TCGTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---T------------------------------------------GGCAGC------AAC------------------------AACAGCAACA----------ACAGCAGCAACAGCAGCGG-----------------CAACAGCGGCGACGGCAGCTGC------------AGC-----------AGCA---GCAGCAGC-----------A------------ACA---ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------AGAGATATTGATGCCGACATTGCCA--TTGGCA-TCGCCATCG----GCATCAGAGACATCAATCGACTCAATGTC
droAna3	scaffold_13117:381305-381501 +		CTCACCGCCGAG----C--A-------------------------------------------------GCAGCAGCA---------GTTG----------CAGAGCAGCCTGCAGCAG---GG-------CG-----------------------------------GCGGC------------TGCCTCAAC---------------CCGAAGCTCTTCTTCAGC------CA---CGCCCAGC--------------------AG-----ATG-ATGATGGAGGCGGCAGCGGCGGCGG-----------------CG-----------------------------------------------------GCAGCGGCAGCGGCCCTCCA------------GCA---GCAGC------------------AG------------------------------------GAG-------------GAGTCCGACGT----GGCGGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCAGGCG-GG---------GGCAGCGGCCTC
droBip1	scf7180000396589:2061290-2061535 -		ACACAT-CCACGGCCCAAGG-------------------------------------------------GCAGCAAATCATT-------------------CAGAGCCACAT---------GATGAACCTGCA---GC-----------------------------A------------------------GAAGCAGCAGCAAGTGT---------------TGCATGTCC---AAC------------------------AACAA-------------------CAACAACAGCAGCAG-----------------CCAACGCAACAACAACAGCTTCCCCAGC--------------------AGCAGCCACA---AC-----------AG------CA---ACAGCAGCAGCAACAAGTACAATTCACACAAC-AGCA------------ACA--GATTGCGCT----GGGA--------------ACTG----------------------------------------------------------------------GTGGTCAAGTGCGGATCATTCA--------------------------------------------------------------------------------------------------------GC------------------------AAACGATTCAGCGGC
droKik1	scf7180000302690:360934-361103 +		TGCAGG-ACTCCTCGCCAGTCATGATCAACA-----------------------GCGGAGCCACGGCGGG--------C-------------------------------------------------------------------------------------------AAG---------------------------------------------------CTCAAA------AAG------------------------CA----------------------AGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGTGCGGACAAATGGAGACGGTGGTTGGTGCTGGAGTCAGTCCTCCCGACAGCTCAGTGGCG-GTACTCAACGGTGGTGTTGGTG--------------------------------------------------------------------------------------------------------GT------------------------GGGACACCTAATGGC
droFic1	scf7180000454106:1884507-1884661 +		TGGCAG-CAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAGC------------------------AACAGCAACA----------GCAGCAACAGCAACTGCAG-----------------CAAC---------AGCAACGACAGCAGCAAC---AG--------------------------C-----------AGCAGCGGCGGCGGCG---GCGGA------------------GGA-GGAGGAGG---TGGACACA--GCTTGAGTTTCAAGGGCACCGGGC--------------GGCATGTCCCCTCA--------------------------------------ACT------------------------------------------------------------------------------------------------------------------------------------------------------GG-------------------------AT
droEle1	scf7180000490993:1702180-1702347 -		TGGCAG-TACCCCAA---TG----------------TTGCCCTTTTACTCCCACTTGCAACTGCAACAGA---------------------------------------------------------------------------------------------------------------AGGA---------------------------------------TG---------------------------------------CAA----------CA---GCAACAATGGGATCTGAAG-----------------CA------GCAACAGTG---GCGGCAGC---TGCAACAT-----------------------C-----------G------------GCA---ACTGC------------------AG------------------ATA--------ACT------------------------------TCAGTTCCTTACA--------------------------------------AACGATCG------A---------------------------------------------------------------------------------------------------------------------------TGCCAG---TCAATTGGATG--------------------GTGG
droRho1	scf7180000780165:74188-74351 -		TGACAA-AATG--------------------GCG--------------------------------------------------------T--------------------------------------------------------------------CAGTCGGCAGAAATGTCAA---CGGA---------AGT---------------------------TGCAGCAGCAACCAC------------------------AACAG-----C--AGCA---GCAGCAACATCAGCAGCAG-----------------CA------------ACAGCAAC---------------GCCATA-----AACAA--GCA---AC-----------ACCAG---CC---GCA---------------------------AC-AGCA----GCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGT------------------------------CGATG------------------------GGCA-TGGG---CCAAATGGCAG------------------GAGGAC
droBia1	scf7180000302126:1332323-1332507 -		AGACCA-GCAGCAG----------------------------------------------CCGCAGCAGA--------CATG-------------------------------------------------CA---GC--------------------------------GATATGTGCAGAGGATGCAACAGCAGC---------------------------AGC------AGCAGC------------------------AACAA----------------------CAGCAGCAGC--------------------------------AGCAACATCAGGAGCTGC---TACG-----CCAGCA---------GC--------------A---------------------GC------------------AA-------------CATCGCACCAGCATGAGCGGCATAGCCAGCCAGC--------------AGCACTTGC-------------------------------------------------------------------------------A---------------------------------------GCAAATGGACGCGCA----------------------------------------------------------------------------------GTACACCAC
droTak1	scf7180000414393:168020-168199 -		CAACGG-CGGCCACCACGGTAGCT------------------------------------------------------------------ACAAAGAGCGAGC-----------AAGTGGAGGA-------CA-----------------------------------GCAAT---------------------------------------------------CACAAC------AAC------------------------CAGGACAACA----------GGAGCCACAGCAGCAGCAG-----------------CAGCAGCAGCAACAGCAGC------------------TCAATGGCC---------AC------------------------------------------------------------------------------------GGAGGAGG---------------------------------------------------------------------------------------------------------CGGAGGAGCAGGAGGAAGATCACCTGCAGCAGCAGCA--------------------------------------------GC----------------------------------------------------------------AGCAGCATCATC
droEug1	scf7180000409672:4516047-4516211 -		ACATCT-TCATG----CCCA-------------------------------------------------GCAGCTGTTGGCT-------------------CAGAGTCAG---------------------T--------------------------------------------------------------------------------------------TGCAGCAGCAGCAGC------------------------AGCAA-----C--AGCA---GCAGCAACATCATCAGCAG-----------------CA------ACAACAGCAG--GC---A---------GC-----------AGCA---GCA---GC-----------AGCGG---CG---GCA---------------------------GC-AGCA----GCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGC------------------------------TGGTG------------------------TGCA-TGGC---CA----GCATGGGGGACA-----------TGTGAC
dm3	chr3L:21221333-21221526 +		CGTCGG-CCTCCTCCTCCGGA----TCT---TCG--------------------------------------------------CGATCCT----------GC-----------GGATCCTCCT-------CTGCATCCTCCTCCTCGTCAGCGG----------------------------------------------------------------------------------TC------------------------AGCAG-------------------CACCATCAGCAGCGG-----------------CC------GCAGCAGCAACAACAGCGTC--------------------------------G---TCAACCCCGCA------------GCA---ACATC------------------TTC-ATCTG---------------------------------------------TTGCGCATCTG--------------------------------------------------------------------------------------A---------------------------------------ACAAAGGTACGTGCAATTT----------------------------------------------------------GCA--ACTGACA--CTGCGA---CTCTTC
droSim2	3r:15726356-15726556 +		CAACAG-CAGCA---------------------------------------------------------------------------ACTT----------CAGTACCGCCT---------CCTCGGTGGGCA---GC--------------------------------------------------------------------------------------------------AGC------------------------ATCAGCGTTG----------GCAGCAACAGCAGCAGCAG-----------------CAACTGCAGCAACGGCAGCAACAGCAAC---AGCAACGA-----------------------C-----------A------------GCA---ACAGC------------------AGC-AGCGGCGG---CGGCCACC--GATTGAGTTTCAAGGGCACCGGAC--------------GGCATGTTCCCGCG--------------------------------------AGCGGATT------A---------------------------------------------------------------------------------------------------------------------------GGTTCA---TCG------------------------GCGGCATC
droSec2	scaffold_0:16595765-16595965 +		CAACAG-CAGCA---------------------------------------------------------------------------ACTT----------CAGTACCGCCT---------CCTCGGTGGGCA---GC--------------------------------------------------------------------------------------------------AGC------------------------ATCAGCGTTG----------GCAGCAACAGCAGCAGCAG-----------------CAACTGCAGCAACGGCAGCAACAGCAAC---AGCAACGA-----------------------C-----------A------------GCA---ACAGC------------------AGC-AGCGGCGG---CGGGCACC--GATTGAGTTTCAAGGGCACCGGAC--------------GGCATGTTCCCGCG--------------------------------------AGCGGATT------A---------------------------------------------------------------------------------------------------------------------------GGTTCA---TCG------------------------GCGGCATC
droYak3	3R:26225441-26225598 +		CCACCC-GCATCATCGCCATCGCAGACGACGACG--GCG---C-------------------------------------------------------------------------------AG-------CA-----------------------------------------------------------GCAGC---------------------------AGC------AGCAGC------------------------AACAACAACA----------GCAGCAACAGCAACAGCAG-----------------CAGCAGCAGCAGCGGCAGCAACTGCAAC---TGCAACAT-----------------------C-----------A------------GCA---ACTGC------------------AGC-AGCAGC--------------------------------------------------------AGAAGC-----------------------------------------------------------------------------------------------------------------------------------------------------GG--------------------GCT-------------------------------------------GTTGGGCG
droEre2	scaffold_4690:10486256-10486419 +		CAGCAG-ACGCCCAGCC-------------------------------------------------------------------------ACAAGTTG---CA---------------------------------------------------GGCGACATTGAGCAGCGAT------------------------------------------------------------------------------------CCGAACGGCAA-----CA--GCA---ACAGCAACACCGTTGGCAG-----------------CA------------GC---------AGC---AGCAACAA-----------------------C-----------A------------GCA---GCATC------------------ACG-GACG-----------------------ACT------------------------------TC----------------------------------------------------------------------------------------------------------------------CTGTGC--------------------------------GTTG------------------------TGGA-TGGG---CT----GTATCAGGGACG--CAAGGACTCGGCCTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

TGACAG-ACTCCACCCCAGTACTGATCA-----------------------------------------------------------------------------------------------------------------------------------------ATGGCAATGCTGG---AGGA----------------------------------------------------------AGCACTGCAACAACCCCAACATCGA-----CA--GCA---GCAGCAACATCGGCGGCGG-----------------CG------------GT------------------GGCA-----GC---G------GCAGCG-----------------------------------G----------------------------------CAACCTCCCTGGGAAAGCTTCAGAAG-------------AAGCCCGAGGATATGTGCGGGCA--------------------------------------ATT------------------------------------------------------------------------------------------------------------------------------------------------------GGATGGGGGA--------CATTCGGCCTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................................................................................................................................................AGCG-----------------------------------G----------------------------------CAACCTCCCTGGGA............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
....................ACTGATCA-----------------------------------------------------------------------------------------------------------------------------------------ATGGCAATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
....................ACTGATCA-----------------------------------------------------------------------------------------------------------------------------------------ATGGCAATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0

droVir3

TGGCTG-CCGCCTACT--ATCAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---GCAGCAACAGCATCAGCAG-----------------CA---------------ACATC---AGC--------------------------------A-----------------------------------GCAACATGCC---GCTGCACAACAGCAACAGC---TGGGCAAT--ATTTCACCATTGCCTCCGCTGGGCGGCACACACTCGACGAGCTCGTCGGCC---------------------------------------AGCTCGAC------A---------------------------------------------------------------------------------------------------------------------------GCTACA---TC---------------------ACAGCCGGCGTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACACTCGACGAGCTCGTCGGCC---------------------------------------AGCT..................................................................................................................................................................................	30	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--ATTTCACCATTGCCTCCGCTGGGC........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................ATCAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CATCAGCAG-----------------CA---------------ACATC---AG..................................................................................................................................................................................................................................................................................................................................................................................................	18	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................ACAGCATCAGCAG-----------------CA---------------ACA.........................................................................................................................................................................................................................................................................................................................................................................................................	18	16	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................C---------------------------------------AG-----C--AGCA---GCAGCAACAGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CAGCAG-----------------CA---------------ACATC---AGC--------------------------------A-----------------------------------GC...........................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GC---------------------------------------AG-----C--AGCA---GCAGCAACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................A---GCAGCAACAGCATCAGCAG-----------------C............................................................................................................................................................................................................................................................................................................................................................................................................................	21	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................G-----C--AGCA---GCAGCAACAGCATCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................A---GCAGCAACAGCATCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................G-----C--AGCA---GCAGCAACAGCATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---GCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---GCAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---GCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................AACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---G................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AGCAG-----------------CA---------------ACATC---AGC--------------------------------A-----------------------------------GCA..........................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---GCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AGC---------------------------AGC---------------------------------------AG-----C--AGCA---GCAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---GCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AGCA---GCAGCAACAGCATCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---GCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC---------------------------AGC---------------------------------------AG-----C--AGCA---GCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AG-----------------CA---------------ACATC---AGC--------------------------------A-----------------------------------GCAAC........................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCGCAT-ACGCCCACGCAGTCGGAGTCT-----------------------------------------------------------------------------------------------------------------------------------------GCGGAAACGCTGG---CCCA----------GG---------------------------AGC------TGCGCC------------------------GACTGC----------A---GACGGAG------------CGTGCCAAGTCGGGCGACG------ACAGCAGCGA--AG---A---------GC-------------------------------------A------------GCA---GCAGCAGGAGGAGCAACTGGCGCGAC-AGCT------------GGA--GGCAGAGG-CCGA-G------------------------------------------------------------------------------------------GAGTCCAAGT---------------------------------------------------------------GCATATTGCAGCTGAAGAAG--------------------ACG-------------------------------------------CTTGCCTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................................................GC----------A---GACGGAG------------CGTGCCAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................GCA---GCAGCAGGAGGAGCAAC...............................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................A--AG---A---------GC-------------------------------------A------------GCA---GCAGCAGGA.......................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GC-------------------------------------A------------GCA---GCAGCAGGAGGAGCA.................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	1	0	0	0	1

droGri2

CAACAA-ATCT--ACGCCAG-------------------------------------------------A--------TACTCAACAATCT----------AAACATTTTC------------------GGC--------------------------------------------------------------------------------------------AGC------AG---CACTAAGCAC---------------AGCA----------------ACAACAACAGCAACAACAG-----------------CA------GCAATAGCAATAATAGCAACAGC---AATG-----GCC---------ACAGC--------------A---------------------GC------------------AAC--------------------------------------CACTTGAC--------------GGCA---------------------------------------------------------------------------------------------------------GCA--------ACTGGGTC------------------------------GGGTGGATCAA-----GTGTTGCCGGGTCGACGCTGC------------------------ATCTGATGCAGCATC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

TGGCAA-CAGTG------------------------GCAC----------------------------------------------------------------------------------CT-------CAACAGCAACAGCAGCAGCAGCAG----------------------------GC----------------------------------------------------------GGCACCGCAGCACCATCAACAACAA-----CA--G-----------A------------CATCGCCAGTGGTGATGCC------ACAGCAGCAACAGCCCC---------AAC-----------AGCA---GCAGCAGC-----------AA------------CT---ACCCC------------------AGC-AGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGACCAGCTACC----------------------------------------------------------------AGGA-TATG---CA----ACA------------------TCAGGCAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGACCAGCTACC----------------------------------------------------------------AGGA-T.........................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................ACAGCAGCAGCAGCAG----------------------------GC----------------------------------------------------------GGCACCGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................GCAG----------------------------GC----------------------------------------------------------GGCACCGCAGCACCATCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CA--G-----------A------------CATCGCCAGTGGTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.....A-CAGTG------------------------GCAC----------------------------------------------------------------------------------CT-------CAACAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CAACAGCCCC---------AAC-----------AGCA---GCAGCA................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GCAACAGCCCC---------AAC-----------AGCA---GCAGC.................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................AACAGCCCC---------AAC-----------AGCA---GCAGC.................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................AACAGCAGCAGCAGCAG----------------------------GC----------------------------------------------------------GGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................GCAACAGCAGCAGCAGCAG----------------------------GC----------------------------------------------------------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CC---------AAC-----------AGCA---GCAGCAGC-----------AA------------.....................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................CAGCAACAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................CC---------AAC-----------AGCA---GCAGCAGC-----------AA------------C....................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................AACAGCAACAGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................GCAACAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGGCTG-TACA--------------------TCGTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---T------------------------------------------GGCAGC------AAC------------------------AACAGCAACA----------ACAGCAGCAACAGCAGCGG-----------------CAACAGCGGCGACGGCAGCTGC------------AGC-----------AGCA---GCAGCAGC-----------A------------ACA---ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------AGAGATATTGATGCCGACATTGCCA--TTGGCA-TCGCCATCG----GCATCAGAGACATCAATCGACTCAATGTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----GCATCAGAGACATCAATCGACTC......	26	1	4.00	4	4	0	0	0	0	0
................................CGTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---T------------------------------------------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	1.75	7	0	7	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------AGAG........................................................................	24	5	1.20	6	0	6	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCATCG----GCATCAGAGACA.................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCG----GCATCAGAGACATCAATCGACT.......	26	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAGAGACATCAATCGACTCA.....	24	1	1.00	1	0	1	0	0	0	0
................................CGTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---T------------------------------------------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	1.00	4	0	4	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAGAGACATCAATCGAC........	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCGACATTGCCA--TTGGCA-..........................................	26	5	1.00	5	0	5	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAGAGACATCAATCGACT.......	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----GCATCAGAGACATCAATCGACT.......	25	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCGACATTGCCA--TTGGC............................................	25	5	0.80	4	0	4	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------AGAGA.......................................................................	25	5	0.60	3	0	3	0	0	0	0
.....................................................................................................................................................................................T------------------------------------------GGCAGC------AAC------------------------AACAGCAACA----------ACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
................................CGTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.50	2	0	2	0	0	0	0
................................CGTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---T------------------------------------------GGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.50	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGAGACATCAATCGACTCAATG..	26	5	0.40	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------............................................................................	20	5	0.40	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCGACATTGCCA--TTGGCA-T.........................................	27	5	0.40	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................CAACAGCGGCGACGGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.40	2	0	0	2	0	0	0
.......TACA--------------------TCGTGACACTCCA----------------------------------------------A----------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0
................................CGTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---T------------------------------------------GGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
.................................GTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---T------------------------------------------GGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0
................................CGTGACACTCCA----------------------------------------------A----------CAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0
.........................................CCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---T------------------------------------------GGCAGC------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0	0
.................................GTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---T------------------------------------------GG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
..................................TGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---T------------------------------------------GGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
.......TACA--------------------TCGTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	1	0	0	0
................................CGTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0
................................CGTGACACTCCA----------------------------------------------A----------CAGTGCC--------------------------------------------------------------------GA---T------------------------------------------GGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................AAC------------------------AACAGCAACA----------ACAGCAGCAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGCCGACATTGCCA--TTGGCA-TCG.......................................	27	5	0.20	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCGACATTGCCA--TTGGCA-A.........................................	27	5	0.20	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------AGAG........................................................................	23	5	0.20	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCGACATTGCCA--TTGG.............................................	24	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------AG..........................................................................	22	5	0.20	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGACATTGCCA--TTGGCA-TCG.......................................	23	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................A---ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------............................................................................	21	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------AGAGATA.....................................................................	27	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------AGA.........................................................................	23	5	0.20	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................CAGCAACAGCAGCGG-----------------CAACAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------AGAGAT......................................................................	26	5	0.20	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------............................................................................	18	5	0.20	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................CAGCGGCGACGGCAGCTGC------------AGC-----------.............................................................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCGACATTGCC....................................................	19	5	0.20	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCGACATTGCCA--TTG..............................................	23	5	0.20	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GGCGACGGCAGCTGC------------AGC-----------AG...........................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGACATTGCCA--TTGGCA-TCGCC.....................................	25	5	0.20	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCGACATTGCCA--TT...............................................	22	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCCGACATTGCCA--TTG..............................................	20	5	0.20	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGATGCCGACATTGCCA--TTG..............................................	25	5	0.20	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------AGAGAA......................................................................	25	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------A...........................................................................	21	5	0.20	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACA---ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------A...........................................................................	24	5	0.20	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCA--TTGGCA-TCGCCATCG----G............................	22	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGACATTGCCA--TTGGCA-TCGC......................................	23	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--TTGGCA-TCGCCATCG----GCAT.........................	21	5	0.20	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................ACA---ACTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------............................................................................	23	5	0.20	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTTC------------------AAC-AACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-----------ACACC------------------------------AGAGA.......................................................................	24	5	0.20	1	0	1	0	0	0	0
................................................................................................................................................................................................................................GGCAGC------AAC------------------------AACAGCAACA----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	8	0.13	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................AACAGCAACA----------ACAGCAGCAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................CAGC------AAC------------------------AACAGCAACA----------ACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AACAGCAACA----------ACAGCAGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droAna3

CTCACCGCCGAG----C--A-------------------------------------------------GCAGCAGCA---------GTTG----------CAGAGCAGCCTGCAGCAG---GG-------CG-----------------------------------GCGGC------------TGCCTCAAC---------------CCGAAGCTCTTCTTCAGC------CA---CGCCCAGC--------------------AG-----ATG-ATGATGGAGGCGGCAGCGGCGGCGG-----------------CG-----------------------------------------------------GCAGCGGCAGCGGCCCTCCA------------GCA---GCAGC------------------AG------------------------------------GAG-------------GAGTCCGACGT----GGCGGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCAGGCG-GG---------GGCAGCGGCCTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................AGCAG---GG-------CG-----------------------------------GCGGC------------TGCCTCAAC---------------CC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................GCGGCGG-----------------CG-----------------------------------------------------GCAGCGGCAGCGGCCC......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATGGAGGCGGCAGCGGCGGCGG-----------------C............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................G-----ATG-ATGATGGAGGCGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................GCAGCGGCGGCGG-----------------CG-----------------------------------------------------GCAG..................................................................................................................................................................................................................................................................................................................................................................	19	12	0.08	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GGCAGCGGCGGCGG-----------------CG-----------------------------------------------------GC....................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0

droBip1

ACACAT-CCACGGCCCAAGG-------------------------------------------------GCAGCAAATCATT-------------------CAGAGCCACAT---------GATGAACCTGCA---GC-----------------------------A------------------------GAAGCAGCAGCAAGTGT---------------TGCATGTCC---AAC------------------------AACAA-------------------CAACAACAGCAGCAG-----------------CCAACGCAACAACAACAGCTTCCCCAGC--------------------AGCAGCCACA---AC-----------AG------CA---ACAGCAGCAGCAACAAGTACAATTCACACAAC-AGCA------------ACA--GATTGCGCT----GGGA--------------ACTG----------------------------------------------------------------------GTGGTCAAGTGCGGATCATTCA--------------------------------------------------------------------------------------------------------GC------------------------AAACGATTCAGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCAGG-ACTCCTCGCCAGTCATGATCAACA-----------------------GCGGAGCCACGGCGGG--------C-------------------------------------------------------------------------------------------AAG---------------------------------------------------CTCAAA------AAG------------------------CA----------------------AGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGTGCGGACAAATGGAGACGGTGGTTGGTGCTGGAGTCAGTCCTCCCGACAGCTCAGTGGCG-GTACTCAACGGTGGTGTTGGTG--------------------------------------------------------------------------------------------------------GT------------------------GGGACACCTAATGGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGGCAG-CAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTAGC------------------------AACAGCAACA----------GCAGCAACAGCAACTGCAG-----------------CAAC---------AGCAACGACAGCAGCAAC---AG--------------------------C-----------AGCAGCGGCGGCGGCG---GCGGA------------------GGA-GGAGGAGG---TGGACACA--GCTTGAGTTTCAAGGGCACCGGGC--------------GGCATGTCCCCTCA--------------------------------------ACT------------------------------------------------------------------------------------------------------------------------------------------------------GG-------------------------AT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGGCAG-TACCCCAA---TG----------------TTGCCCTTTTACTCCCACTTGCAACTGCAACAGA---------------------------------------------------------------------------------------------------------------AGGA---------------------------------------TG---------------------------------------CAA----------CA---GCAACAATGGGATCTGAAG-----------------CA------GCAACAGTG---GCGGCAGC---TGCAACAT-----------------------C-----------G------------GCA---ACTGC------------------AG------------------ATA--------ACT------------------------------TCAGTTCCTTACA--------------------------------------AACGATCG------A---------------------------------------------------------------------------------------------------------------------------TGCCAG---TCAATTGGATG--------------------GTGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGACAA-AATG--------------------GCG--------------------------------------------------------T--------------------------------------------------------------------CAGTCGGCAGAAATGTCAA---CGGA---------AGT---------------------------TGCAGCAGCAACCAC------------------------AACAG-----C--AGCA---GCAGCAACATCAGCAGCAG-----------------CA------------ACAGCAAC---------------GCCATA-----AACAA--GCA---AC-----------ACCAG---CC---GCA---------------------------AC-AGCA----GCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGT------------------------------CGATG------------------------GGCA-TGGG---CCAAATGGCAG------------------GAGGAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGACCA-GCAGCAG----------------------------------------------CCGCAGCAGA--------CATG-------------------------------------------------CA---GC--------------------------------GATATGTGCAGAGGATGCAACAGCAGC---------------------------AGC------AGCAGC------------------------AACAA----------------------CAGCAGCAGC--------------------------------AGCAACATCAGGAGCTGC---TACG-----CCAGCA---------GC--------------A---------------------GC------------------AA-------------CATCGCACCAGCATGAGCGGCATAGCCAGCCAGC--------------AGCACTTGC-------------------------------------------------------------------------------A---------------------------------------GCAAATGGACGCGCA----------------------------------------------------------------------------------GTACACCAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAACGG-CGGCCACCACGGTAGCT------------------------------------------------------------------ACAAAGAGCGAGC-----------AAGTGGAGGA-------CA-----------------------------------GCAAT---------------------------------------------------CACAAC------AAC------------------------CAGGACAACA----------GGAGCCACAGCAGCAGCAG-----------------CAGCAGCAGCAACAGCAGC------------------TCAATGGCC---------AC------------------------------------------------------------------------------------GGAGGAGG---------------------------------------------------------------------------------------------------------CGGAGGAGCAGGAGGAAGATCACCTGCAGCAGCAGCA--------------------------------------------GC----------------------------------------------------------------AGCAGCATCATC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACATCT-TCATG----CCCA-------------------------------------------------GCAGCTGTTGGCT-------------------CAGAGTCAG---------------------T--------------------------------------------------------------------------------------------TGCAGCAGCAGCAGC------------------------AGCAA-----C--AGCA---GCAGCAACATCATCAGCAG-----------------CA------ACAACAGCAG--GC---A---------GC-----------AGCA---GCA---GC-----------AGCGG---CG---GCA---------------------------GC-AGCA----GCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGC------------------------------TGGTG------------------------TGCA-TGGC---CA----GCATGGGGGACA-----------TGTGAC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CGTCGG-CCTCCTCCTCCGGA----TCT---TCG--------------------------------------------------CGATCCT----------GC-----------GGATCCTCCT-------CTGCATCCTCCTCCTCGTCAGCGG----------------------------------------------------------------------------------TC------------------------AGCAG-------------------CACCATCAGCAGCGG-----------------CC------GCAGCAGCAACAACAGCGTC--------------------------------G---TCAACCCCGCA------------GCA---ACATC------------------TTC-ATCTG---------------------------------------------TTGCGCATCTG--------------------------------------------------------------------------------------A---------------------------------------ACAAAGGTACGTGCAATTT----------------------------------------------------------GCA--ACTGACA--CTGCGA---CTCTTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................................................................................CAGCGTC--------------------------------G---TCAACCCCGCA------------GCA---ACAT............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-ATCTG---------------------------------------------TTGCGCATCTG--------------------------------------------------------------------------------------A---------------------------------------AC........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CATCAGCAGCGG-----------------CC------GCAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CCTCCTCCTCGTCAGCGG----------------------------------------------------------------------------------TC------------------------AGCAG-------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGCGTC--------------------------------G---TCAACCCCGCA------------GCA---................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CATC------------------TTC-ATCTG---------------------------------------------TTGCGCATC..........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CAACAACAGCGTC--------------------------------G---TCAACCCCG....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................AGCAGCGG-----------------CC------GCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CAACAG-CAGCA---------------------------------------------------------------------------ACTT----------CAGTACCGCCT---------CCTCGGTGGGCA---GC--------------------------------------------------------------------------------------------------AGC------------------------ATCAGCGTTG----------GCAGCAACAGCAGCAGCAG-----------------CAACTGCAGCAACGGCAGCAACAGCAAC---AGCAACGA-----------------------C-----------A------------GCA---ACAGC------------------AGC-AGCGGCGG---CGGCCACC--GATTGAGTTTCAAGGGCACCGGAC--------------GGCATGTTCCCGCG--------------------------------------AGCGGATT------A---------------------------------------------------------------------------------------------------------------------------GGTTCA---TCG------------------------GCGGCATC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................TCAGCGTTG----------GCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TCAGCGTTG----------GCAGCAACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAG-----------------CAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................A------------GCA---ACAGC------------------AGC-AGCG.................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAG-----------------C............................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CAACAG-CAGCA---------------------------------------------------------------------------ACTT----------CAGTACCGCCT---------CCTCGGTGGGCA---GC--------------------------------------------------------------------------------------------------AGC------------------------ATCAGCGTTG----------GCAGCAACAGCAGCAGCAG-----------------CAACTGCAGCAACGGCAGCAACAGCAAC---AGCAACGA-----------------------C-----------A------------GCA---ACAGC------------------AGC-AGCGGCGG---CGGGCACC--GATTGAGTTTCAAGGGCACCGGAC--------------GGCATGTTCCCGCG--------------------------------------AGCGGATT------A---------------------------------------------------------------------------------------------------------------------------GGTTCA---TCG------------------------GCGGCATC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................................................A-----------------------C-----------A------------GCA---ACAGC------------------AGC-AGCGG................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	1
............................................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAG-----------------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1
............................................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAG-----------------C............................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0

droYak3

CCACCC-GCATCATCGCCATCGCAGACGACGACG--GCG---C-------------------------------------------------------------------------------AG-------CA-----------------------------------------------------------GCAGC---------------------------AGC------AGCAGC------------------------AACAACAACA----------GCAGCAACAGCAACAGCAG-----------------CAGCAGCAGCAGCGGCAGCAACTGCAAC---TGCAACAT-----------------------C-----------A------------GCA---ACTGC------------------AGC-AGCAGC--------------------------------------------------------AGAAGC-----------------------------------------------------------------------------------------------------------------------------------------------------GG--------------------GCT-------------------------------------------GTTGGGCG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................GCAACAT-----------------------C-----------A------------GCA---ACTGC------------------AGC-AGCAGC--------------------------------------------------------.......................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AGC------AGCAGC------------------------AACAACAACA----------GCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................AG-------CA-----------------------------------------------------------GCAGC---------------------------AGC------AGCAGC------------------------AACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................C------------------------AACAACAACA----------GCAGCAACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAG-----------------CAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................CAGCAACAGCAACAGCAG-----------------CAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................AACAGCAACAGCAG-----------------CAGCAGCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGC------------------------AACAACAACA----------GCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................AACAGCAACAGCAG-----------------CAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGCAACAGCAG-----------------CAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GCAGCAACAGCAACAGCAG-----------------CAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AGCAG-----------------CAGCAGCAGCAGCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GCAGC---------------------------AGC------AGCAGC------------------------AACAACAACA----------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................ACAGCAACAGCAG-----------------CAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GCAG-----------------CAGCAGCAGCAGCGGCA............................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................C-------------------------------------------------------------------------------AG-------CA-----------------------------------------------------------GCAGC---------------------------AGC------AGCAGC------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................A----------GCAGCAACAGCAACAGCAG-----------------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CAGCAG-ACGCCCAGCC-------------------------------------------------------------------------ACAAGTTG---CA---------------------------------------------------GGCGACATTGAGCAGCGAT------------------------------------------------------------------------------------CCGAACGGCAA-----CA--GCA---ACAGCAACACCGTTGGCAG-----------------CA------------GC---------AGC---AGCAACAA-----------------------C-----------A------------GCA---GCATC------------------ACG-GACG-----------------------ACT------------------------------TC----------------------------------------------------------------------------------------------------------------------CTGTGC--------------------------------GTTG------------------------TGGA-TGGG---CT----GTATCAGGGACG--CAAGGACTCGGCCTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................TC------------------ACG-GACG-----------------------ACT------------------------------TC----------------------------------------------------------------------------------------------------------------------CTGTGC--------------------------------GTTG------------------------...............................................	24	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AG-----------------CA------------GC---------AGC---AGCAACAA-----------------------C-----------...................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AG-----------------CA------------GC---------AGC---AGCAACAA-----------------------C-----------A------------GCA---GCA.............................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................GCAG-----------------CA------------GC---------AGC---AGCAACAA-----------------------C-----------A------------GC....................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0

dwi_3035

scf2_1100000004921:3697337-3697420 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.6	-17.5