dwi_3030

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCTTCTACATCTGGGTGTATGCATTCGCCTCGTGCATTCCCGCCTTACAAGTAAGTGTTATATCAAGTCAATGATGTCATCATTCGTGTATACCCATAATTCTTGCGTACAAATGGGTGGGGTGGGGGAGGTGTTGGCCACTATCACTATCGCGGCAACTGTAGATTTTTAAGCAATTATTCATTGTGTCGCTTATCAAACGTTTCCATCCGGCAACGGAATTCCTACGCCAAGTAAATGGGCTTACACTG ***************************************************************************************************************...(((((((((.((.(((....))).)).))))).))))........................************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	M020 head	V117 male body	V119 head
.................................................................................................................TGGGTGGGGTGGGGGAGGTG......................................................................................................................	20	0	1	4.00	4	1	2	0	1	0
................................................................................................................ATGGGTGGGGTGGGGGAGGTGT.....................................................................................................................	22	0	1	2.00	2	1	1	0	0	0
................................................................................................................ATGGGTGGGGTGGGGGAGGTG......................................................................................................................	21	0	1	2.00	2	1	1	0	0	0
....................GTATTCGCCTCGTGCATTCCCGC................................................................................................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0
.................................................................................................................TGGGTGGGGTGGGGGAGGTGT.....................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
.........TCTGGGTGTATGCATTCG................................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
..............GTGTGTGCATTCGCCTCGTGC........................................................................................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0
.........TCTGGGTGTATGCATTCGCCT.............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
............................CTCGTGCATTCCCGCCTTACAA.........................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
................................................................................................................................AGGTGTTGGCCACTATCACTA......................................................................................................	21	0	1	1.00	1	1	0	0	0	0
............................................................................................................................................................AACTGTAGATTTTTAAGCAAT..........................................................................	21	0	1	1.00	1	0	0	1	0	0
..............................................................................................................................................ATCACTATCGCGGCAACTG..........................................................................................	19	0	1	1.00	1	1	0	0	0	0
............................................................................................................................................................AACTGTAGATTTTTAAGC.............................................................................	18	0	1	1.00	1	0	0	1	0	0
..................................................................................................................................................CTATCGCGGCAACTGTAGATT....................................................................................	21	0	1	1.00	1	1	0	0	0	0
..........................................................................TGTCATCATTCGTCCATACTCAT..........................................................................................................................................................	23	3	2	0.50	1	0	1	0	0	0
.....................................................................................................................TGGGGTCGGGCAGGTGTTGG..................................................................................................................	20	2	3	0.33	1	1	0	0	0	0
....................................................................................................................TTGGGGTAGGGGAGGTGTT....................................................................................................................	19	2	4	0.25	1	0	0	0	1	0
.........................................................................................................................GTGGGGGTGGTGCTGGCCA...............................................................................................................	19	2	14	0.07	1	1	0	0	0	0
..........................................................................................................................................................................AAGCAATTATTGATAGTG...............................................................	18	2	20	0.05	1	0	0	0	0	1
......................................................................................................................GGAGTGGTGGAGGTGTTG...................................................................................................................	18	2	20	0.05	1	1	0	0	0	0
...............................................................................................................AACGGGTGGGGTGGGTGATG........................................................................................................................	20	3	20	0.05	1	1	0	0	0	0

AGAAGATGTAGACCCACATACGTAAGCGGAGCACGTAAGGGCGGAATGTTCATTCACAATATAGTTCAGTTACTACAGTAGTAAGCACATATGGGTATTAAGAACGCATGTTTACCCACCCCACCCCCTCCACAACCGGTGATAGTGATAGCGCCGTTGACATCTAAAAATTCGTTAATAAGTAACACAGCGAATAGTTTGCAAAGGTAGGCCGTTGCCTTAAGGATGCGGTTCATTTACCCGAATGTGAC ************************************************************************...(((((((((.((.(((....))).)).))))).))))........................***************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V119 head	M045 female body	V118 embryo	V117 male body
..................................................................................................................................................GATAGCGCCGTTGACATCTAA....................................................................................	21	0	1	1.00	1	0	1	0	0
......................................GGGCGGAATGTTCGTTCACAA................................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	1
......................................................................................................................................................GCGCCGCTGACATCTAGAAAT................................................................................	21	2	1	1.00	1	1	0	0	0
.........................................................................................................................................GGTGATAGTGGTAGCGCCGTT.............................................................................................	21	1	1	1.00	1	0	1	0	0
.....................................AGGGCGGAATGTTCATTCACAATA..............................................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0
............................................................................................GGGTATTAAGAACGCATGT............................................................................................................................................	19	0	1	1.00	1	1	0	0	0
.........................GCGGAGCACGTAAGGGCGGAAT............................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0
....................CGTAAGCGGAGCACGGAAT....................................................................................................................................................................................................................	19	2	4	0.25	1	1	0	0	0
.......................................................................................................................................................................................................TGCAGAGGTAGGCAGTTAC.................................	19	3	12	0.08	1	0	0	0	1
...............................................................................................................................................................................................GAATAGTTTGCAAAGTTAC.........................................	19	2	18	0.06	1	0	1	0	0

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004921:3362368-3362618 -	dwi_3030	TCTTCTACATCTGGGTGTATGCATTCGCCTCGTGCATTCCCGCCTTACAAGTAAGTG---TT------AT-------------------------------------------------------A------------T-------------------------------------------------------------------C-----------AAGTCAATG-----ATGTCATCATT----------CGTGTATACCCATAATTCTTGCGTACAAATGGGTGGGGTGGGGGAGGTGTTGGCCACTATCACTATCGCGGCAACTGTAGATTTTTAAGCAATTATTCATTGTGT-C------GCTTATCAAACG----------------------------TTTCCATCCGGCAACGGAAT-TCCTACGCCAAGTAAATGGGCTTACAC---TG
droVir3	scaffold_12855:3656242-3656443 -		TCTTCTACATCGTCATCTACACACTTGTTGTGTGCATTCCGGGCCTCTCGGTAAGTGCCGGG----------------------TAGGGGTTGGGCGTCGC---------ATA-----------TA------------T-------------------------------------------------------------------ATATTCCACAATGACATCATA-----TCATTATTTAT---------------------GTA-------------------------GTTG----CCGAGTGCGGGCCGCTTATCGCAAT--TCGTAGAGTTTTGTACAATTACTCATCTAACTA------AG--------------CCA-ACTAGTCTT-ATGATA---------------------------------------------------------
droMoj3	scaffold_6540:7950228-7950499 -		TCTGCTACATCATAGTCTATTCAATGGTTGTGTGCTTTCCGGGTTTATCGGTAAGGA---CA----------------------TA------------CAC---------ATG-----------TA------------TATATTTGTGCTAACTAACAATGATATCATCTAACTGT----GCATTATATA-AA-----------TTATATCTCTGACT-ACTC-ATATACATAGTAT-----------------------------A-------------------------GTTG----CCGGGTGCGAAACACTTATCGCGCT--TCGTAGATTTTTGTTCCATTACTCATTACTCAC------AAGAACTA------AGCCA-ACGAGTCTT-ATGATAAAAAACAAAA----------------------CAAAAATCA----CCCACACACCCA
droGri2	scaffold_14906:6312911-6313107 -		TCTTATACATTATCCTCTACACGCTTGTCGTCTGCATTCCGGGACTATCGGTAAGTG---GG----------------------CAGGGCTTG---------------------------------------------------------------------------TGCGGTGG----G--------------------------------------GGTCATAA-----AACATCATGATGACCTCATTACCACAATT----TA-------------------------GTT------------TGGTTCGCTTATCGCGAC--ATGTAGATTCCCCGAGCATTACTCATTATGTTC------GCCGCCCGTCTA--AACCC-CCGAGTCTT-G--------------------------------------------------------------
dp5	2:11000697-11000907 -		TCTTCTACATCTGGGTCTATGCATTTGCCTCCTGCATACCCGCCCTGTCGGTGAGTCCGG------------------------------------------------------------------------------------------------------------------GAAATACCAGCAT--GGTGTGGGGTGGGGT--CGT-CA-CGGGTGAGGTCAT-------------------------CGCTACGAAA----CA----------------------GGTGCTG----CATGCGGCTCT-TGCTTATCACAGA-AAAGTACATTTCTTCACAATTACTCATGTGCCAT-----ACTTTATCGGGAA--TACTGGGAGGGGCTT----------------------------------------------------------------
droPer2	scaffold_0:9466272-9466506 +		TCTTCTACATCTGGGTATATGCATTTGCCTCCTGCATACCCGCCCTGTCGGTGAGTCCGG------------------------------------------------------------------------------------------------------------------GAAATACCAGCAT--GGTGTGGGGTGGGGT--CGT-CA-CGGGTGAGGTCAT-------------------------CGCTACGAAA----CA----------------------GGTGCTG----CATGCGGCT-TTTGCTTATCACAGA-AAAGTACATTTCTTCACAATTACTCATGTGCCAT-----ACTTTATCGGGGA--GACTGGGAGGGGCTTTACGGAAAATGTGGA-------------------------------------CAAACGC---GA
droAna3	scaffold_13340:1639206-1639372 +		TCTTCTACATCTGGGTCTATGCCTTCGCTTCCTGCATTCCAGCCCTCACAGTAAGTT---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----TATGG----GCTTGCTTATCGAGTC--ATGTAGATTTCTAACCAATTAGTCATTACGGGGACTTTAACTTATCAGAGCCACACAA-CTGGGGCT-----------------------------------------------------------------
droBip1	scf7180000396712:2686829-2687021 -		TCTTCTACATCTGGGTCTATGCATTCGCTTCCTGCATTCCAGCCCTCACAGTAAGTA---TT------ATTTCCAGGAGTACAGTGGGGAACG------------------------------------------------------------------------------GGCGT----G---------------------GTTGA------------AGTGAAAA----TGCTTT----------------------------------------------------------------------GAGTTTGCTTATCGAGTC--ATGTAGATTTCTAAGCAATTAGTCATTACGGGGACTTTAACTTATCAGAGCCGCACAA-CTGGGGCT-----------------------------------------------------------------
droKik1	scf7180000302392:756292-756569 -		TCTTCTACATCTGGGTGTATGCCTTCGCCTCCTGCATTCCCGCCCTGACGGTAAGTG---TT----------------------GA------------CTTA-----------------------ATTGGGTGCAGT--TT--------------------------GTTGGGAGG----GCTGTGTTTAGGGTGGGGTGTGGTTTAGT-GGGGAGATGCGTCATGA-----AAAGTACCGCC----------------------TA-------------------------GTTG----CATGCGGCAAC-TGCTTATCGGGCC--CTGTAGATTCTTCACCAATTAGTCATTTCAGCG------ACTTATCAGGGC--CACAA-CCGGGGCTT-ATTGCCA---CCGATATCTGTCCCCGATTTC----GG-----TTCCA----CCTACAC---GG
droFic1	scf7180000453800:1557091-1557327 +		TTTTCTACATATGGGTTTATGCCTTCGCCTCCTGCATTCCAGCCCTTACGGTAAGTT---TT------AT----------------------------C-----------ATT-----------TATAGG------GT------TGAGCTA----------------TTTAGGTGT----G---------------------CTTAAAA-TCAGGAGTGATTCAATA-----ACCTCACCTGC----------------------TA-------------------------GTTG----CATGAGGCATTTTCCTTATCGGGCC--GTGTAGATTTTTAGGCAATTACTCATTGCTC-G------ACTTATCAGACC--CACAA-ACGGGGCTT-ATGGCAAA----GATAGCCCGCCCCGA------------------------------------
droEle1	scf7180000486474:413681-413901 +		TCTGCTACATTTGGGTGTACGCCTTCGCCTCCTGCATTCCCGCCCTCACGGTAAGTG---GT----------------------TA----------------TGT-----------------------------------------------------------------GGGTGT----A---------------------GCTTAGT-TGGGGGGTGAGTCAAAA-----ACTTTACCTGT----------------------TA-------------------------GTTC----CGTGAGGCACCTGCGTTATCGGGCC-TGGGAAGATATTTAACCAATTAGTCATTCCGGCG------ACTTATCAGAAA--CACAA-CCAGGGCTT-ATAGGCACCAACGATATCTGGCCG---------------------------------------
droRho1	scf7180000773780:7865-8084 +		TCTGCTACATTTGGGTCTACGCCTTCGCCTCCTGCATTCCCGCTCTCACGGTAAGTG---GA----------------------TA----------------TTT-----------------------------------------------------------------GGTTGT----A---------------------GTTTAGA-CCGGGAATGAGTCAAAG-----CCATTACCTGT----------------------TA-------------------------GATG----CATGAGGCACTTTCGTTATCGGGCC--GCGTAGATATTTAACCAATTAGTCATTCCGGCG------ACTTATCAGAAA--CACAA-CCAGGGCTT-ATAAGTACCGCCGGTATCTGGCCC---------------------------------------
droBia1	scf7180000299102:861682-861935 -		TCTTCTACATTTGGGTTTACGCATTTGCCTCCTGCATTCCCGCCCTGACGGTAAGTG---GT----------------------TA----------------TTT-------------------TGTAGG------GG--T--------------------------TTTTGGGGA----A---------AAA-----------CTTTATAGCGGGGTGAGTCAATT-----ACCTTACCAGT----------------------TA-------------------------GTTG----CATGAGGCACTTTTCTTATCGGCCC--GCTCAGATTGCTGGCCCATTAGTCATTTCTGGC------ACTTATCACA----------CCGGGGCTT-ATGGGCAACACCGATATCTGGCCGCGGTTTC----AGACCAACTCAA----CCCACAC---C-
droTak1	scf7180000415377:240860-241063 +		TCTGCTACATTTGGGTCTACGCATTTGCCTCCTGCATTCCCGCCCTTACGGTAAGTG---GTTTT---A-----------------------------------T-----------------------------------------------------------------GATTGC---------------T-----------TTCATAT-CGGGGGTGAGTCAAG-------TTTTACCAGT----------------------AA-------------------------GTTG----CATGAGGCACTTTCGTTATCGGCCC--GTTCAGATTTTTAACCAATTAGTCATTTTGCGG------ACTTATCACACC--CACTA-GCGGGGCTT-ATGGGCAACAC----------------------------------------------------
droEug1	scf7180000409802:922876-923087 -		TTTTCTACATTTGGGTCTACGCCTTTGCCTCCTGCATTCCCGCCCTTACGGTAAGTG---GT----------------------TA------------CGTATAT-----------------------------------------------------------------GGGTGT----A---------------------GTTTATATATGGGGGTGAGTCAATT-----TCCTTACCAGT----------------------TA-------------------------GTTG----CATGAAGCACTTTCCTTATCGTGCC--GTTCAGATTTCTAACCAATTAGTCATTTCGGGG------ACTTATCACTAC--CACAA-CCGGGGCTT-ATGGGCAACAC----------------------------------------------------
dm3	chr3R:9087443-9087674 +		TTTTCTACATCTGGGTCTACGCATTTGCCTCCTGCATTCCCGCCCTGACGGTAAGTG---GGTTTTTTTT------------------------------------------------------------------C--TA--------------------------TTTTGGGGA----GCAGCATTTGAAG-----------TTATATGGCGGGGTGAGTCAATTTACCTGCTTCACCTGC----------------------TG-------------------------GTTG----CATGAGGCACTTTCCTTATCGCGCC--GTCAAGATGTTTAACCCATTAGTCATTTGGGGA------ACTTATCAGACC--CACAA-CCGGAGCTT-ATGGGAAACCG----------------------------------------------------
droSim2	3r:12085364-12085596 -		TCTTCTACATCTGGGTTTACGCATTTGCCTCCTGCATTCCCGCCCTGACGGTAAGTG---GGTTT---A---------------------------------------------------------TAGG------GATTT---------------------------TTTTGGGA----GCAGCATTTGAAG-----------TTATATGGCGGGGTGAGTCAATTTACCTGCTTCACCTGC----------------------TG-------------------------GTTG----CATGAGGCACTTTCCTTATCGCGCC--GCCAAGATGTTTAACCCATTAGTCATTTCGGGA------ACTTATCAGACC--CACAA-CCGGAGCTT-ATGGGCAACAG----------------------------------------------------
droSec2	scaffold_0:12916713-12916946 -		TCTTCTACATCTGGGTCTACGCATTTGCCTCCTGCATTCCCGCCCTGACGGTAAGTG---GGTTT---A---------------------------------------------------------TAGG------GATTT--------------------------TTTTTGGGA----GCAGCATTTAAAG-----------TTATATGGCGGGGTGAGTCAATTTACCTGCTTCACCTGC----------------------TG-------------------------GTTG----CATGAGGCACTTTCCTTATCGCGCC--GCCAAGATGTTTAACCCATTAGTCATTTCGGGA------ACTTATCAGACC--CACAA-CCGGAGCTT-ATGGGCAACAG----------------------------------------------------
droYak3	3R:13391360-13391615 +		TCTTCTACATCTGGGTTTACGCATTCTCCTCCTGCATTCCCGCCCTGGCGGTAAGTG---GGTTT---A-----------------------------CTGG-------------------GTTTTTTAG------T--TT--------------------------TTTTGAGGA----GCAGCATATGAAT-----------TTATATGGGGGGGTGAGTCAATT-----ACTTTACCTGC----------------------TA-------------------------ATTG----CATGAGGCACTTTCCTTATCGGGCC--GTTAAGATGTTTAACCCATTACTCATTTCGGGA------ACTTATCAGACC--CACAA-CCGGAGCTT-ATGGGCAACACAGATAACCGGCCCCGCTTT--------------------------------G
droEre2	scaffold_4770:12561951-12562210 -		TTTTCTACATCTGGGTTTACGCATTCGCCTCCTGCATTCCCGCCTTGACGGTAAGTG---GGCTT---A-----------------------------------TAAACCATATATGTAGGCTTTTTTGG------T--TT--------------------------TTTTGGGGA----GCAG---ATGAAT-----------TTATAT-GAGGAGTGAGTCAATT-----ACTTTACCTGC----------------------TA-------------------------GTGG----CATGAGGCACTTTCCTTATCGGGCC--GTTAAGATGTTTAACCCATTACTCATTTCGGGA------ACTTATCAGACC--CGCAA-CCGGAGCTT-ATGGGCAGCGCCGATGACTGGCCCCG-------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

TCTTCTACATCTGGGTGTATGCATTCGCCTCGTGCATTCCCGCCTTACAAGTAAGTG---TT------AT-------------------------------------------------------A------------T-------------------------------------------------------------------C-----------AAGTCAATG-----ATGTCATCATT----------CGTGTATACCCATAATTCTTGCGTACAAATGGGTGGGGTGGGGGAGGTGTTGGCCACTATCACTATCGCGGCAACTGTAGATTTTTAAGCAATTATTCATTGTGT-C------GCTTATCAAACG----------------------------TTTCCATCCGGCAACGGAAT-TCCTACGCCAAGTAAATGGGCTTACAC---TG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................TGGGTGGGGTGGGGGAGGTG.............................................................................................................................................................	20	1	4.00	4	0	1	1	2	0
.........................................................................................................................................................................................................................................................................................ATGGGTGGGGTGGGGGAGGTGT............................................................................................................................................................	22	1	2.00	2	0	1	0	1	0
.........................................................................................................................................................................................................................................................................................ATGGGTGGGGTGGGGGAGGTG.............................................................................................................................................................	21	1	2.00	2	0	1	0	1	0
..........................................................................................................................................................................................................................................................................................TGGGTGGGGTGGGGGAGGTGT............................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.........TCTGGGTGTATGCATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
.........TCTGGGTGTATGCATTCGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
............................CTCGTGCATTCCCGCCTTACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................AGGTGTTGGCCACTATCACTA.............................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................AACTGTAGATTTTTAAGCAAT.................................................................................................................	21	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................ATCACTATCGCGGCAACTG.................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................AACTGTAGATTTTTAAGC....................................................................................................................	18	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTATCGCGGCAACTGTAGATT...........................................................................................................................	21	1	1.00	1	0	1	0	0	0

droVir3

TCTTCTACATCGTCATCTACACACTTGTTGTGTGCATTCCGGGCCTCTCGGTAAGTGCCGGG----------------------TAGGGGTTGGGCGTCGC---------ATA-----------TA------------T-------------------------------------------------------------------ATATTCCACAATGACATCATA-----TCATTATTTAT---------------------GTA-------------------------GTTG----CCGAGTGCGGGCCGCTTATCGCAAT--TCGTAGAGTTTTGTACAATTACTCATCTAACTA------AG--------------CCA-ACTAGTCTT-ATGATA---------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................CACTTGTTGTGTGCATTCCGGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTGTGCATTCCGGGCCTCTCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CTTCTACATCGTCATCTACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TTGTTGTGTGCATTCCGGG................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATTCCGGGCCTCTCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GCATTCCGGGCCTCTCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCTACACACTTGTTGTGTGCATTCCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCCGGGCCTCTCGGTAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCTGCTACATCATAGTCTATTCAATGGTTGTGTGCTTTCCGGGTTTATCGGTAAGGA---CA----------------------TA------------CAC---------ATG-----------TA------------TATATTTGTGCTAACTAACAATGATATCATCTAACTGT----GCATTATATA-AA-----------TTATATCTCTGACT-ACTC-ATATACATAGTAT-----------------------------A-------------------------GTTG----CCGGGTGCGAAACACTTATCGCGCT--TCGTAGATTTTTGTTCCATTACTCATTACTCAC------AAGAACTA------AGCCA-ACGAGTCTT-ATGATAAAAAACAAAA----------------------CAAAAATCA----CCCACACACCCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................GTTGTGTGCTTTCCGGGTTTATCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.......................ATGGTTGTGTGCTTTCCGGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................TCAATGGTTGTGTGCTTTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................AATGGTTGTGTGCTTTCCGGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
................................TGCTTTCCGGGTTTATCGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................GTGCTTTCCGGGTTTATCGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..............GTCTATTCAATGGTTGTGTGCTTTCCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........CATAGTCTATTCAATGGTTGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...................TTCAATGGTTGTGTGCTTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1

droGri2

TCTTATACATTATCCTCTACACGCTTGTCGTCTGCATTCCGGGACTATCGGTAAGTG---GG----------------------CAGGGCTTG---------------------------------------------------------------------------TGCGGTGG----G--------------------------------------GGTCATAA-----AACATCATGATGACCTCATTACCACAATT----TA-------------------------GTT------------TGGTTCGCTTATCGCGAC--ATGTAGATTCCCCGAGCATTACTCATTATGTTC------GCCGCCCGTCTA--AACCC-CCGAGTCTT-G--------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...TATACATTATCCTCTACACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0

dp5

TCTTCTACATCTGGGTCTATGCATTTGCCTCCTGCATACCCGCCCTGTCGGTGAGTCCGG------------------------------------------------------------------------------------------------------------------GAAATACCAGCAT--GGTGTGGGGTGGGGT--CGT-CA-CGGGTGAGGTCAT-------------------------CGCTACGAAA----CA----------------------GGTGCTG----CATGCGGCTCT-TGCTTATCACAGA-AAAGTACATTTCTTCACAATTACTCATGTGCCAT-----ACTTTATCGGGAA--TACTGGGAGGGGCTT----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................CCTGCATACCCGCCCTGTCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	1	0	0	0	0	0	0	0	0
.........TCTGGGTCTATGCATTTGCCTCCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GGGT--CGT-CA-CGGGTGAGGTC...........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................TGCTG----CATGCGGCTCT-TGCT...............................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....CTACATCTGGGTCTATGCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........ATCTGGGTCTATGCATTTGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..TTCTACATCTGGGTCTATGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................GCCCTGTCGGTGAGTCCGG------------------------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................TATGCATTTGCCTCCTGCATACC...................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................AATACCAGCAT--GGTGTGGGGT....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................CCTGCATACCCGCCCTGTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TTTCTTCACAATTACTCATGT........................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CTGGGTCTATGCATTTGCCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............GTCTATGCATTTGCCTCCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............GGTCTATGCATTTGCCTCCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
TCTTCTACATCTGGGTCTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........ATCTGGGTCTATGCATTTGCCTCCTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CTGGGTCTATGCATTTGCCTCCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........ATCTGGGTCTATGCATTTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................CTGCATACCCGCCCTGTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................CTCCTGCATACCCGCCCTGTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CCAGCAT--GGTGTGGGGTGGT.................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......CATCTGGGTCTATGCATTTGCCTCCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..TTCTACATCTGGGTCTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TCTTCTACATCTGGGTATATGCATTTGCCTCCTGCATACCCGCCCTGTCGGTGAGTCCGG------------------------------------------------------------------------------------------------------------------GAAATACCAGCAT--GGTGTGGGGTGGGGT--CGT-CA-CGGGTGAGGTCAT-------------------------CGCTACGAAA----CA----------------------GGTGCTG----CATGCGGCT-TTTGCTTATCACAGA-AAAGTACATTTCTTCACAATTACTCATGTGCCAT-----ACTTTATCGGGGA--GACTGGGAGGGGCTTTACGGAAAATGTGGA-------------------------------------CAAACGC---GA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................ATACCCGCCCTGTCGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	4	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTGCCAT-----ACTTTATCGGGGA--GT.............................................................................	22	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................T-----ACTTTATCGGGGA--GACTG..........................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................GT-CA-CGGGTGAGGTCAT-------------------------CGT.............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
......................ATTTGCCTCCTGCATACCCGCCCTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.......CATCTGGGTATATGCATTTGCCTCCTGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0

droAna3

TCTTCTACATCTGGGTCTATGCCTTCGCTTCCTGCATTCCAGCCCTCACAGTAAGTT---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----TATGG----GCTTGCTTATCGAGTC--ATGTAGATTTCTAACCAATTAGTCATTACGGGGACTTTAACTTATCAGAGCCACACAA-CTGGGGCT-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....TACATCTGGGTCTATGCCTTCGCTTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	25.00	25	19	6	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TAACTTATCAGAGCCACACAA-CTGG.....................................................................	25	1	12.00	12	7	1	4	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TAACTTATCAGAGCCACACAA-CTGGGG...................................................................	27	1	10.00	10	10	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GATTTCTAACCAATTAGTCATTACGGG....................................................................................................	27	1	9.00	9	7	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TAACTTATCAGAGCCACACAA-CTGGGGC..................................................................	28	1	7.00	7	4	2	1	0	0	0
.....TACATCTGGGTCTATGCCTTCGCTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	7.00	7	5	2	0	0	0	0
...................................................TAAGTT---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGG.....................................................................................................................................................................	27	1	7.00	7	6	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TAACTTATCAGAGCCACACAA-CTGGG....................................................................	26	1	6.00	6	2	4	0	0	0	0
.....TACATCTGGGTCTATGCCTTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	4	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TAACTTATCAGAGCCACACAA-CTGGGGCT-----------------------------------------------------------------	29	1	5.00	5	5	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTAACTTATCAGAGCCACACAA-CTGG.....................................................................	27	1	5.00	5	4	1	0	0	0	0
....CTACATCTGGGTCTATGCCTTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	5	0	0	0	0	0
.................TATGCCTTCGCTTCCTGCATTCCAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	4.00	4	1	3	0	0	0	0
...................TGCCTTCGCTTCCTGCATTCCAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	1	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TTTCTAACCAATTAGTCATTACGGG....................................................................................................	25	1	3.00	3	0	2	0	0	1	0
...................................................TAAGTT---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGT.......................................................................................................................................................................	25	1	3.00	3	0	2	0	0	1	0
........................................................T---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----T..............................................................................................................................................................	25	1	3.00	3	1	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTAACTTATCAGAGCCACACAA-CTGGGG...................................................................	29	1	3.00	3	3	0	0	0	0	0
....CTACATCTGGGTCTATGCCTTCGCTTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	1	1	0	0	0	0
........................................................T---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGG.....................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................AACTTATCAGAGCCACACAA-CTGGGG...................................................................	26	1	2.00	2	1	1	0	0	0	0
.............................................................T----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----T..............................................................................................................................................................	23	1	2.00	2	0	1	1	0	0	0
...................................................TAAGTT---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTG......................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TAACTTATCAGAGCCACACAA-CTG......................................................................	24	1	2.00	2	2	0	0	0	0	0
......ACATCTGGGTCTATGCCTTCGCTTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
.....TACATCTGGGTCTATGCCTTCGCTTCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0
........................................................T---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGT....................................................................................................................................................................	23	1	2.00	2	0	1	0	0	1	0
.......................TTCGCTTCCTGCATTCCAGCCCTCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.............................................................T----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGT....................................................................................................................................................................	21	1	2.00	2	1	1	0	0	0	0
...................TGCCTTCGCTTCCTGCATTCCAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
....CTACATCTGGGTCTATGCCTTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.....TACATCTGGGTCTATGCCTTCGCTTCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.......................TTCGCTTCCTGCATTCCAGCCCTCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	1	1	0	0	0	0
....................................................AAGTT---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGG........................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCTAACCAATTAGTCATTACGGG....................................................................................................	24	1	2.00	2	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCGAGTC--ATGTAGATTTCTAACCAAT.................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TATGG----GCTTGCTTATCGAGTC--ATG.................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
........................TCGCTTCCTGCATTCCAGCCCTC............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....CTACATCTGGGTCTATGCCTTCGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................TTCGCTTCCTGCATTCCAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TCTGAGAAA-----G----------------G----CGGTGGTG----TATGG----GC....................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................TTCGCTTCCTGCATTCCAGCCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCTAACCAATTAGTCATTACGGGGACT................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TAACTTATCAGAGCCACACAA-CTGGGT...................................................................	27	1	1.00	1	1	0	0	0	0	0
............................TTCCTGCATTCCAGCCCTCACAGTA......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
TCTTCTACATCTGGGTCTATGCCTTCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----C..............................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................TATGCCTTCGCTTCCTGCATTCCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................T----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----TAT............................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCTAACCAATTAGTCATTACGGGG...................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..............................CCTGCATTCCAGCCCTCACAGTAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TTTAACTTATCAGAGCCACACAA-CT.......................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TAACTTATCAGAGCCACACAA-CTGGGA...................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ACTTTAACTTATCAGAGCCACACAA-C........................................................................	26	1	1.00	1	0	1	0	0	0	0
.....TACATCTGGGTCTATGCCTTCGCTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................TCGCTTCCTGCATTCCAGCCCTCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.............................TCCTGCATTCCAGCCCTCACAGTAAGTT---A..............................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.................TATGCCTTCGCTTCCTGCATTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TTGCTTATCGAGTC--ATGTAGATT...........................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AGATTTCTAACCAATTAGTCATTACGGG....................................................................................................	28	1	1.00	1	1	0	0	0	0	0
............GGGTCTATGCCTTCGCTTCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................TCGCTTCCTGCATTCCAGCCCTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................ATGG----GCTTGCTTATCGAG........................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CGGTGGTG----TATGG----GCTTGCT...............................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................TAAGTT---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTT......................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..................ATGCCTTCGCTTCCTGCATTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
TCTTCTACATCTGGGTCTATGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....TACATCTGGGTCTATGCCTTCGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
........................................................T---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----TATG...........................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................ATTTCTAACCAATTAGTCATTACGGG....................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................ATGCCTTCGCTTCCTGCATTCCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TTTCTAACCAATTAGTCATTACGGGG...................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.............................................................T----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----C..............................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AACCAATTAGTCATTACGGGGAA.................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................AACTTATCAGAGCCACACAA-CTGG.....................................................................	24	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................TGAGAAA-----G----------------G----CGGTGGTG----TATGG----GCT...................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.........TCTGGGTCTATGCCTTCGCTTCCTGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.......................................................TT---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----...............................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......CATCTGGGTCTATGCCTTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................ATCAGAGCCACACAA-CTGGG....................................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TATCAGAGCCACACAA-CTGGGGC..................................................................	23	1	1.00	1	0	1	0	0	0	0
.................TATGCCTTCGCTTCCTGCATTCCAGCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
........................TCGCTTCCTGCATTCCAGCCCTCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................T----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----...............................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CCAATTAGTCATTACGGGGACTTT..............................................................................................	24	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTAACTTATCAGAGCCACACAA-CTGG.....................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TATCGAGTC--ATGTAGATTTCTAACCAAT.................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................AACTTATCAGAGCCACACAA-CTGGGGC..................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................TTCGCTTCCTGCATTCCAGCCCTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....CTACATCTGGGTCTATGCCTTCGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
......................CTTCGCTTCCTGCATTCCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----TA.............................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................TGCCTTCGCTTCCTGCATTCCAGCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.......................TTCGCTTCCTGCATTCCAGCCCTCACAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TG----TATGG----GCTTGCTTATCGAGTC--....................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.................TATGCCTTCGCTTCCTGCATTCCA..................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACCAATTAGTCATTACGGGGACTTT..............................................................................................	25	1	1.00	1	0	1	0	0	0	0
......ACATCTGGGTCTATGCCTTCGCTTC............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................TTCGCTTCCTGCATTCCAGCCCTCACAA........................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TAACCAATTAGTCATTACGGGGACTTT..............................................................................................	27	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CATTACGGGGACTTTAACTTATCAGA...................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AGATTTCTAACCAATTAGTCATTACGG.....................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..........CTGGGTCTATGCCTTCGCTTCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TTAACTTATCAGAGCCACACAA-CTGGGG...................................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................ACTTATCAGAGCCACACAA-CTGGGG...................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................GCTTATCGAGTC--ATGTAGATTTCTA.......................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..TTCTACATCTGGGTCTATGCCTTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................T---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----...............................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GTGGTG----TATGG----GCTTGCTTATCGAGT.......................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......CATCTGGGTCTATGCCTTCGCTTCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TTTCTAACCAATTAGTCATTACGGGGA..................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...................................................TAAGTT---AT----------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----...........................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................TTCTGAGAAA-----G----------------G----CGGTGGTG----TA.............................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGAGAAA-----G----------------G----CGGTGGTG----T..............................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCCACACAA-CTGGGGC..................................................................	24	1	1.00	1	0	1	0	0	0	0

droBip1

TCTTCTACATCTGGGTCTATGCATTCGCTTCCTGCATTCCAGCCCTCACAGTAAGTA---TT------ATTTCCAGGAGTACAGTGGGGAACG------------------------------------------------------------------------------GGCGT----G---------------------GTTGA------------AGTGAAAA----TGCTTT----------------------------------------------------------------------GAGTTTGCTTATCGAGTC--ATGTAGATTTCTAAGCAATTAGTCATTACGGGGACTTTAACTTATCAGAGCCGCACAA-CTGGGGCT-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCTTCTACATCTGGGTGTATGCCTTCGCCTCCTGCATTCCCGCCCTGACGGTAAGTG---TT----------------------GA------------CTTA-----------------------ATTGGGTGCAGT--TT--------------------------GTTGGGAGG----GCTGTGTTTAGGGTGGGGTGTGGTTTAGT-GGGGAGATGCGTCATGA-----AAAGTACCGCC----------------------TA-------------------------GTTG----CATGCGGCAAC-TGCTTATCGGGCC--CTGTAGATTCTTCACCAATTAGTCATTTCAGCG------ACTTATCAGGGC--CACAA-CCGGGGCTT-ATTGCCA---CCGATATCTGTCCCCGATTTC----GG-----TTCCA----CCTACAC---GG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTTCTACATATGGGTTTATGCCTTCGCCTCCTGCATTCCAGCCCTTACGGTAAGTT---TT------AT----------------------------C-----------ATT-----------TATAGG------GT------TGAGCTA----------------TTTAGGTGT----G---------------------CTTAAAA-TCAGGAGTGATTCAATA-----ACCTCACCTGC----------------------TA-------------------------GTTG----CATGAGGCATTTTCCTTATCGGGCC--GTGTAGATTTTTAGGCAATTACTCATTGCTC-G------ACTTATCAGACC--CACAA-ACGGGGCTT-ATGGCAAA----GATAGCCCGCCCCGA------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCTGCTACATTTGGGTGTACGCCTTCGCCTCCTGCATTCCCGCCCTCACGGTAAGTG---GT----------------------TA----------------TGT-----------------------------------------------------------------GGGTGT----A---------------------GCTTAGT-TGGGGGGTGAGTCAAAA-----ACTTTACCTGT----------------------TA-------------------------GTTC----CGTGAGGCACCTGCGTTATCGGGCC-TGGGAAGATATTTAACCAATTAGTCATTCCGGCG------ACTTATCAGAAA--CACAA-CCAGGGCTT-ATAGGCACCAACGATATCTGGCCG---------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCTGCTACATTTGGGTCTACGCCTTCGCCTCCTGCATTCCCGCTCTCACGGTAAGTG---GA----------------------TA----------------TTT-----------------------------------------------------------------GGTTGT----A---------------------GTTTAGA-CCGGGAATGAGTCAAAG-----CCATTACCTGT----------------------TA-------------------------GATG----CATGAGGCACTTTCGTTATCGGGCC--GCGTAGATATTTAACCAATTAGTCATTCCGGCG------ACTTATCAGAAA--CACAA-CCAGGGCTT-ATAAGTACCGCCGGTATCTGGCCC---------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCTTCTACATTTGGGTTTACGCATTTGCCTCCTGCATTCCCGCCCTGACGGTAAGTG---GT----------------------TA----------------TTT-------------------TGTAGG------GG--T--------------------------TTTTGGGGA----A---------AAA-----------CTTTATAGCGGGGTGAGTCAATT-----ACCTTACCAGT----------------------TA-------------------------GTTG----CATGAGGCACTTTTCTTATCGGCCC--GCTCAGATTGCTGGCCCATTAGTCATTTCTGGC------ACTTATCACA----------CCGGGGCTT-ATGGGCAACACCGATATCTGGCCGCGGTTTC----AGACCAACTCAA----CCCACAC---C-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCTGCTACATTTGGGTCTACGCATTTGCCTCCTGCATTCCCGCCCTTACGGTAAGTG---GTTTT---A-----------------------------------T-----------------------------------------------------------------GATTGC---------------T-----------TTCATAT-CGGGGGTGAGTCAAG-------TTTTACCAGT----------------------AA-------------------------GTTG----CATGAGGCACTTTCGTTATCGGCCC--GTTCAGATTTTTAACCAATTAGTCATTTTGCGG------ACTTATCACACC--CACTA-GCGGGGCTT-ATGGGCAACAC----------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTTTCTACATTTGGGTCTACGCCTTTGCCTCCTGCATTCCCGCCCTTACGGTAAGTG---GT----------------------TA------------CGTATAT-----------------------------------------------------------------GGGTGT----A---------------------GTTTATATATGGGGGTGAGTCAATT-----TCCTTACCAGT----------------------TA-------------------------GTTG----CATGAAGCACTTTCCTTATCGTGCC--GTTCAGATTTCTAACCAATTAGTCATTTCGGGG------ACTTATCACTAC--CACAA-CCGGGGCTT-ATGGGCAACAC----------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTTTCTACATCTGGGTCTACGCATTTGCCTCCTGCATTCCCGCCCTGACGGTAAGTG---GGTTTTTTTT------------------------------------------------------------------C--TA--------------------------TTTTGGGGA----GCAGCATTTGAAG-----------TTATATGGCGGGGTGAGTCAATTTACCTGCTTCACCTGC----------------------TG-------------------------GTTG----CATGAGGCACTTTCCTTATCGCGCC--GTCAAGATGTTTAACCCATTAGTCATTTGGGGA------ACTTATCAGACC--CACAA-CCGGAGCTT-ATGGGAAACCG----------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................TTGCCTCCTGCATTCCCGCCCTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTACGCATTTGCCTCCTGCATTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................T------------------------------------------------------------------C--TA--------------------------TTTTGGGGA----GCAGCATTTGAAG-----------...............................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TCCTGCATTCCCGCCCTGACGGTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CTGGGTCTACGCATTTGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................................................................................................TTTCCTTATCGCGCC--GTCAAGA.............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................ATCAGACC--CACAA-CCGGAGCT.................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........CTGGGTCTACGCATTTGCCTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TA--------------------------TTTTGGGGA----GCAGCATTTT.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TCTGGGTCTACGCATTTGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CATCTGGGTCTACGCATTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CTACATCTGGGTCTACGCATTTGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ATCGCGCC--GTCAAGATGTTTA.......................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TCTTCTACATCTGGGTTTACGCATTTGCCTCCTGCATTCCCGCCCTGACGGTAAGTG---GGTTT---A---------------------------------------------------------TAGG------GATTT---------------------------TTTTGGGA----GCAGCATTTGAAG-----------TTATATGGCGGGGTGAGTCAATTTACCTGCTTCACCTGC----------------------TG-------------------------GTTG----CATGAGGCACTTTCCTTATCGCGCC--GCCAAGATGTTTAACCCATTAGTCATTTCGGGA------ACTTATCAGACC--CACAA-CCGGAGCTT-ATGGGCAACAG----------------------------------------------------

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

TCTTCTACATCTGGGTCTACGCATTTGCCTCCTGCATTCCCGCCCTGACGGTAAGTG---GGTTT---A---------------------------------------------------------TAGG------GATTT--------------------------TTTTTGGGA----GCAGCATTTAAAG-----------TTATATGGCGGGGTGAGTCAATTTACCTGCTTCACCTGC----------------------TG-------------------------GTTG----CATGAGGCACTTTCCTTATCGCGCC--GCCAAGATGTTTAACCCATTAGTCATTTCGGGA------ACTTATCAGACC--CACAA-CCGGAGCTT-ATGGGCAACAG----------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....CTACATCTGGGTCTACGCATTTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0

droYak3

TCTTCTACATCTGGGTTTACGCATTCTCCTCCTGCATTCCCGCCCTGGCGGTAAGTG---GGTTT---A-----------------------------CTGG-------------------GTTTTTTAG------T--TT--------------------------TTTTGAGGA----GCAGCATATGAAT-----------TTATATGGGGGGGTGAGTCAATT-----ACTTTACCTGC----------------------TA-------------------------ATTG----CATGAGGCACTTTCCTTATCGGGCC--GTTAAGATGTTTAACCCATTACTCATTTCGGGA------ACTTATCAGACC--CACAA-CCGGAGCTT-ATGGGCAACACAGATAACCGGCCCCGCTTT--------------------------------G	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................ATTCTCCTCCTGCATTCCCGCCCTGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.CTTCTACATCTGGGTTTACGCATTCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CAA-CCGGAGCTT-ATGGGCA........................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TATCAGACC--CACAA-CCGGAGCTT-...............................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......CATCTGGGTTTACGCATTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..TTCTACATCTGGGTTTACGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...TCTACATCTGGGTTTACGCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................GTGAGTCAATT-----ACTTTACCTGC----------------------TA-------------------------.......................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.CTTCTACATCTGGGTTTACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

TTTTCTACATCTGGGTTTACGCATTCGCCTCCTGCATTCCCGCCTTGACGGTAAGTG---GGCTT---A-----------------------------------TAAACCATATATGTAGGCTTTTTTGG------T--TT--------------------------TTTTGGGGA----GCAG---ATGAAT-----------TTATAT-GAGGAGTGAGTCAATT-----ACTTTACCTGC----------------------TA-------------------------GTGG----CATGAGGCACTTTCCTTATCGGGCC--GTTAAGATGTTTAACCCATTACTCATTTCGGGA------ACTTATCAGACC--CGCAA-CCGGAGCTT-ATGGGCAGCGCCGATGACTGGCCCCG-------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................CTGCATTCCCGCCTTGACGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
...............................CTGCATTCCCGCCTTGACGG........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................CGGGCC--GTTAAGATGTTACC......................................................................................................................	20	2	0.50	1	1	0	0	0	0	0	0

dwi_3030

scf2_1100000004921:3362418-3362568 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-12.1	-11.9	-11.9