ID:

dwi_299

 Coordinate:

scf2_1100000003720:4887-5037 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.2 -5.1 -5.1

Flybase annnotation

exon [dwil_GLEANR_1444:2]; CDS [Dwil\GK14121-cds]; intron [Dwil\GK14121-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-2_DPer-I-intLTRGypsy-
mature
  1. scf2_1100000001895:1417-1441 -
  2. dwi_299  scf2_1100000003720:4911-4935 +
  3. scf2_1100000004602:11788-11812 -
  4. scf2_1100000004628:2365-2389 +
  5. scf2_1100000004649:31773-31797 +
  6. scf2_1100000004828:24048-24072 -
  7. scf2_1100000004819:13218-13242 +
  8. scf2_1100000004943:238248-238272 +
  9. scf2_1100000004943:474258-474282 +
  10. scf2_1100000004935:69111-69135 +
  11. scf2_1100000004936:754262-754286 -
  12. scf2_1100000004958:1441962-1441986 +
  13. scf2_1100000004961:1162452-1162476 +
  14. scf2_1100000004961:2344217-2344241 -
  15. scf2_1100000004961:4167164-4167188 +
  16. scf2_1100000004967:140671-140695 +
  17. scf2_1100000004967:3297174-3297198 +
  18. scf2_1100000004967:3303526-3303550 +
  19. scf2_1100000004967:3308915-3308939 +
  20. scf2_1100000000727:955-979 +
star
  1. scf2_1100000002569:81-109 +
  2. scf2_1100000013223:141-169 -
  3. scf2_1100000011223:1613-1641 -
  4. dwi_299  scf2_1100000003720:4949-4977 +
  5. scf2_1100000004602:11746-11774 -
  6. scf2_1100000004628:2403-2431 +
  7. scf2_1100000004649:31811-31839 +
  8. scf2_1100000004828:24007-24035 -
  9. scf2_1100000004819:13256-13284 +
  10. scf2_1100000004943:269021-269049 -
  11. scf2_1100000004943:290510-290538 -
  12. scf2_1100000004943:474296-474324 +
  13. scf2_1100000004936:754220-754248 -
  14. scf2_1100000004958:1442000-1442028 +
  15. scf2_1100000004961:2344175-2344203 -
  16. scf2_1100000004967:140709-140737 +
  17. scf2_1100000000727:993-1021 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAGAAGAAGCAGCAGCGACAAGTGTGACTGGAGATGCCTCCTCCGTCAAGGTATTAGGAATACATTGGGATCCAAAGTCTGACATCTTCACATATGGTATAAGGTTGAGCGAATGCACAGAAAGTTCAAAAAGACAAGTATTATCAGACTTTAACTTTTAATAAACCAATAAGTCTGCTCCTCCATGTGTATAAGTTTTGAGATTCTTCATCTTATAACAACTGATTGTACGCATTGGATTAGTCCAATTT
**************************************************************************..((((........................((((((.............))))))..))))......************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V119
head
..........................................................................AAGTCTGACATCTTCACATATGGTA........................................................................................................................................................ 25 0 20 0.15 3 3 0 0 0
.............AGCGACAAGTGTGACTGGAGATGCCT.................................................................................................................................................................................................................... 26 0 15 0.13 2 0 2 0 0
.........CAGCAGCGACAAGTGTGACTG............................................................................................................................................................................................................................. 21 0 17 0.12 2 0 2 0 0
.................ACAAGTGTGACTGGAGATGCC..................................................................................................................................................................................................................... 21 0 17 0.12 2 0 0 2 0
..........................................................................AAGTCTGACATCTTCACATATGG.......................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0
........................................................................CAAAGTCTGACATCATCTCATATGG.......................................................................................................................................................... 25 2 20 0.10 2 2 0 0 0
...................................................................................................TAAGGTTGAGCGAATGCACAGAAAGTT............................................................................................................................. 27 0 14 0.07 1 0 1 0 0
..........AGCAGCGACAAGTGTGACTGGA........................................................................................................................................................................................................................... 22 0 17 0.06 1 1 0 0 0
...................AAGTGTGACTGGAGATGCCT.................................................................................................................................................................................................................... 20 0 17 0.06 1 1 0 0 0
................................................................................................................ATGCACAGAAAGTTCAAAAAGACAAGTAT.............................................................................................................. 29 0 17 0.06 1 1 0 0 0
.AGAAGAAGCAGCAGCGACAAGTG................................................................................................................................................................................................................................... 23 0 17 0.06 1 1 0 0 0
..................CAAGTGTGACTGGAGATGCCTCC.................................................................................................................................................................................................................. 23 0 17 0.06 1 0 0 0 1
...........................................................................................................AGCGAATGCACAGAAAGTTCAAAAAG...................................................................................................................... 26 0 17 0.06 1 0 1 0 0
..................CAAGTGTGACTGGAGATGCCTC................................................................................................................................................................................................................... 22 0 17 0.06 1 1 0 0 0
..................CAAGTGTGACTGGAGATGCCT.................................................................................................................................................................................................................... 21 0 17 0.06 1 0 0 1 0
................GACAAGTGTGACTGGAGATGCCTCC.................................................................................................................................................................................................................. 25 0 17 0.06 1 1 0 0 0
.............................................................................................................CGAATGCACAGAAAGTTCAAAAAGACA................................................................................................................... 27 0 18 0.06 1 1 0 0 0
.................................................................................................TATAAGTTTGAGCGAATGCACAGAA................................................................................................................................. 25 1 18 0.06 1 1 0 0 0
..................................................................................................ATAAGGTTGAGCGAATGCACAGA.................................................................................................................................. 23 0 18 0.06 1 1 0 0 0
................................................................................................................ATGCACAGAAAGTTCAAAAAGACAAGT................................................................................................................ 27 0 19 0.05 1 0 1 0 0
.................................................................................................................TGCACAGAAAGTTCAAAAAGACAAG................................................................................................................. 25 0 19 0.05 1 0 1 0 0
..........................................................................................CATATGGTATAAGGTTGAGC............................................................................................................................................. 20 0 20 0.05 1 0 1 0 0
..............................................................................CTGAGATCTTCACATATGGT......................................................................................................................................................... 20 1 20 0.05 1 0 0 0 1
.......................................................................CCAAAGTCTGACATCTTCACATATGG.......................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
..........................................................................AAGTCTGAGATCTTCACATATGG.......................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0
..........................................................................AAGTCTGACATCATCTCATATGGTA........................................................................................................................................................ 25 2 20 0.05 1 1 0 0 0
..........................................................................AAGTCTGACATCTTCTCATATGGTA........................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0
................................................................................GACATCTTCACATATGGTATAAGGT.................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0
...AAGAAGCAGCAGTGATAAG..................................................................................................................................................................................................................................... 19 2 20 0.05 1 0 1 0 0
.................................................................................................................TGCACAGAAAGTTCAAAAAGT..................................................................................................................... 21 1 20 0.05 1 0 1 0 0

Anti-sense strand reads

ATCTTCTTCGTCGTCGCTGTTCACACTGACCTCTACGGAGGAGGCAGTTCCATAATCCTTATGTAACCCTAGGTTTCAGACTGTAGAAGTGTATACCATATTCCAACTCGCTTACGTGTCTTTCAAGTTTTTCTGTTCATAATAGTCTGAAATTGAAAATTATTTGGTTATTCAGACGAGGAGGTACACATATTCAAAACTCTAAGAAGTAGAATATTGTTGACTAACATGCGTAACCTAATCAGGTTAAA
**************************************************************************************************************..((((........................((((((.............))))))..))))......************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V119
head
 M020
head
.....................................................................................................................GTCTTTCAAGTTTTTCTGTTCATAAT............................................................................................................ 26 0 19 1.32 25 25 0 0 0
..........................................................................................GTATACCATATTCCAACTCGCTTACGT...................................................................................................................................... 27 0 20 0.85 17 16 1 0 0
.....................................................................................................TCCAACTCGCTTACGTGTCTTTCAAGT........................................................................................................................... 27 0 14 0.29 4 0 3 0 1
...........................................................................................TATACCATATTCCAACTCGCTTACGT...................................................................................................................................... 26 0 20 0.25 5 4 1 0 0
..CTTCTTCGTCGTCGCTGTTCACAC................................................................................................................................................................................................................................. 24 0 17 0.24 4 4 0 0 0
....TCTTCGTCGTCGCTGTTCACACTGACCT........................................................................................................................................................................................................................... 28 0 17 0.24 4 4 0 0 0
.........GTCGTCGCTGTTCACACTGACCTCT......................................................................................................................................................................................................................... 25 0 17 0.24 4 4 0 0 0
.......................................................................................................................................................................TCGTTAAGACGAGGAGGTAC................................................................ 20 3 13 0.23 3 0 2 1 0
....TCTTCGTCGTCGCTGTTCACACT................................................................................................................................................................................................................................ 23 0 18 0.22 4 2 2 0 0
....................................................................................AGAAGTGTATACCATATTCCAACTCGCT........................................................................................................................................... 28 0 20 0.20 4 4 0 0 0
...TTCTTCGTCGTCGCTGTTCACACT................................................................................................................................................................................................................................ 24 0 17 0.18 3 3 0 0 0
........CGTCGTCGCTGTTCACACTGACCTCT......................................................................................................................................................................................................................... 26 0 17 0.18 3 3 0 0 0
...........................................................................................................TCGCTTACGTGTCTTTCAAGTTTT........................................................................................................................ 24 0 17 0.18 3 0 3 0 0
....................................................................................AGAAGTGTATACCATATTCCAACTCGCTT.......................................................................................................................................... 29 0 20 0.15 3 3 0 0 0
.................................................................................TGTAGAAGTGTATACCATATTCCAACT............................................................................................................................................... 27 0 20 0.15 3 3 0 0 0
...........................................................................TCAGACTGTAGAAGTGTATACCATATT..................................................................................................................................................... 27 0 20 0.15 3 3 0 0 0
...............................................................................................................TTACGTGTCTTTCAAGTTTTTCTGT................................................................................................................... 25 0 20 0.15 3 3 0 0 0
............................................................................................ATACCATACTCCAACTCGCTTACGT...................................................................................................................................... 25 1 20 0.15 3 3 0 0 0
......................................................................................................CCAACTCGCTTACGTGTCTTTCAAGT........................................................................................................................... 26 0 14 0.14 2 2 0 0 0
......................................................................................................CCAACTCGCTTACGTGTCTTTCAAGTT.......................................................................................................................... 27 0 14 0.14 2 2 0 0 0
...........................GACCTCTACGGAGGAGGCAGTTCCAT...................................................................................................................................................................................................... 26 0 14 0.14 2 2 0 0 0
....................................GGAGGAGGCAGTTCCATAATCCT................................................................................................................................................................................................ 23 0 17 0.12 2 1 1 0 0
............GTCGCTGTTCACACTGACCTCT......................................................................................................................................................................................................................... 22 0 18 0.11 2 2 0 0 0
..............................................................................................ACCATATTCCAACTCGCTTACGTGT.................................................................................................................................... 25 0 18 0.11 2 2 0 0 0
..............................................................................................ACCATATTCCAACTCGCTTACGTGTCTT................................................................................................................................. 28 0 18 0.11 2 2 0 0 0
.....................................................................................................................GTCTTTCAAGTTTCTCTGTTCATAAT............................................................................................................ 26 1 19 0.11 2 2 0 0 0
............................................................................................ATACCATATTCCAACTCGCTTACGT...................................................................................................................................... 25 0 20 0.10 2 1 1 0 0
.............................................................................................TACCATATTCCAACTCGCTTACGT...................................................................................................................................... 24 0 20 0.10 2 2 0 0 0
..........................................................................................GTATACCATATTCCAACTCGCTTACG....................................................................................................................................... 26 0 20 0.10 2 2 0 0 0
...........................................................................................TATACCATACTCCAACTCGCTTACGT...................................................................................................................................... 26 1 20 0.10 2 1 1 0 0
..............................................................................................ACCATATTCCAACTCGCTTACGT...................................................................................................................................... 23 0 20 0.10 2 2 0 0 0
..........................................................................TTCAGACTGTAGAAGTGTATACCATAT...................................................................................................................................................... 27 0 20 0.10 2 0 2 0 0
.........................................................................................................................TTCAAGTTTTTCTGTTCATAATAGT......................................................................................................... 25 0 20 0.10 2 2 0 0 0
.........................................................................................TGTATACCATATTCCAACTCGCTTACGT...................................................................................................................................... 28 0 20 0.10 2 2 0 0 0
.......................................................................................AGTGTATACCATATTCCAACTCGCT........................................................................................................................................... 25 0 20 0.10 2 2 0 0 0
......................................................................................................................TCTTTCAAGTTTTTCTGTTCATAAT............................................................................................................ 25 0 20 0.10 2 2 0 0 0
...................................................................................................ATTCCAACTCGCTTACGTGTCTTTCAAGT........................................................................................................................... 29 0 13 0.08 1 1 0 0 0
......................................................................................................CCAACTCGCTTACGTGTCTTTCAAGTTTT........................................................................................................................ 29 0 14 0.07 1 1 0 0 0
..........................TGACCTCTACGGAGGAGGCAGTTCCAT...................................................................................................................................................................................................... 27 0 14 0.07 1 0 1 0 0
.......................................................................................................CAACTCGCTTACGTGTCTTTCAAGTTT......................................................................................................................... 27 0 15 0.07 1 1 0 0 0
.............................GCTCTACGGAGGAGGCAGTTCCATAAT................................................................................................................................................................................................... 27 1 16 0.06 1 1 0 0 0
..............................CTCTACGGAGGAGGCAGTTCCATAA.................................................................................................................................................................................................... 25 0 16 0.06 1 1 0 0 0
......................................AGGAGGCAGTTCCATAATCCTTATG............................................................................................................................................................................................ 25 0 17 0.06 1 1 0 0 0
...................................CGGAGGAGGCAGTTCCATAATCCT................................................................................................................................................................................................ 24 0 17 0.06 1 1 0 0 0
......................................TGGAGGCAGTTCCATAATCCTTATGT........................................................................................................................................................................................... 26 1 17 0.06 1 0 1 0 0
.....CTTCGTCGTCGCTGTTCACACTGACCT........................................................................................................................................................................................................................... 27 0 17 0.06 1 1 0 0 0
......TTCGTCGTCGCTGTTCACACTGACCT........................................................................................................................................................................................................................... 26 0 17 0.06 1 1 0 0 0
..........TCGTCGCTGTTCACACTGACCTCT......................................................................................................................................................................................................................... 24 0 17 0.06 1 1 0 0 0
..................................ACGGAGGAGGCAGTTCCATAATCCT................................................................................................................................................................................................ 25 0 17 0.06 1 1 0 0 0
........CGTCGTCGCTGTTCACACTGACCTCTA........................................................................................................................................................................................................................ 27 0 17 0.06 1 1 0 0 0
....................................GGAGGAGGCAGTTCCATAATCCTTAT............................................................................................................................................................................................. 26 0 17 0.06 1 1 0 0 0
.........GTCGTCGCTGTTCACACTGACC............................................................................................................................................................................................................................ 22 0 17 0.06 1 1 0 0 0
...TTCTTCGTCGTCGCTGTTCACAGT................................................................................................................................................................................................................................ 24 1 17 0.06 1 1 0 0 0
.........GTCGTCGCTGTTCACACTGACCT........................................................................................................................................................................................................................... 23 0 17 0.06 1 1 0 0 0
................................CTACGGAGGAGGCAGTTCCATAATCCT................................................................................................................................................................................................ 27 0 17 0.06 1 1 0 0 0
................................CTACGGAGGAGGCAGTTCCATAAT................................................................................................................................................................................................... 24 0 17 0.06 1 1 0 0 0
....................................GGAGGAGGCAGTTCCATAATCCTTATGT........................................................................................................................................................................................... 28 0 17 0.06 1 1 0 0 0
........CGTCGTCGCTGTTCACACTGACCT........................................................................................................................................................................................................................... 24 0 17 0.06 1 1 0 0 0
.......................................GGAGGCAGTTCCATAATCCTTATGT........................................................................................................................................................................................... 25 0 17 0.06 1 1 0 0 0
...........................................................................................................TCGCTTACGTGTCTTTCAAGTTTTTCTGT................................................................................................................... 29 0 17 0.06 1 1 0 0 0
....................................GGAGGAGGCAGTTCCATAACCCTTATGT........................................................................................................................................................................................... 28 1 17 0.06 1 1 0 0 0
..........................................................................................GTATACCATATTCCAACTCGCTTACGTGT.................................................................................................................................... 29 0 18 0.06 1 1 0 0 0
.......TCGTCGTCGCTGTTCACACTGA.............................................................................................................................................................................................................................. 22 0 18 0.06 1 1 0 0 0
.....CTTCGTCGTCGCTGTTCACAGT................................................................................................................................................................................................................................ 22 1 18 0.06 1 1 0 0 0
....................................GGAGGAGGCATTTCCATAATCCT................................................................................................................................................................................................ 23 1 18 0.06 1 1 0 0 0
..............................................................................................ACCATATTCCAACTCGCTTACGTGTCT.................................................................................................................................. 27 0 18 0.06 1 1 0 0 0
......TTCGTCGTCGCTGTTCACACT................................................................................................................................................................................................................................ 21 0 18 0.06 1 1 0 0 0
....................................................................................................................TGTCTTTCAAGTTTTTCTGTTCATAAT............................................................................................................ 27 0 18 0.06 1 1 0 0 0
............GTCGCTGTTCACACTGACCTC.......................................................................................................................................................................................................................... 21 0 18 0.06 1 1 0 0 0
............................................................................................ATACCATATTCCAACTCGCTTACGTGT.................................................................................................................................... 27 0 18 0.06 1 1 0 0 0
....TCTTCGTCGTCGCTGTTCACACTG............................................................................................................................................................................................................................... 24 0 18 0.06 1 1 0 0 0
..................................................................................................................CGTGTCTTTCAAGTTTTTCTGTTCATAAT............................................................................................................ 29 0 18 0.06 1 1 0 0 0
.....CTTCGTCGTCGCTGTTCACACT................................................................................................................................................................................................................................ 22 0 18 0.06 1 0 1 0 0
..................................................................................................................CGTGTCTTTCAAGTTTTTCTGTTCAT............................................................................................................... 26 0 18 0.06 1 0 1 0 0
.....................................................................................................................GTCTTTCAAGTTTTGCTGTTCATAAT............................................................................................................ 26 1 19 0.05 1 1 0 0 0
.....................................................................................................................GTCTTTCAAGTTTATCTGTTCATAAT............................................................................................................ 26 1 19 0.05 1 0 1 0 0
......ATCGTCGTCGCTGTTCACACTG............................................................................................................................................................................................................................... 22 1 19 0.05 1 1 0 0 0
.....................................................................................................................GTCTTTCAAGTTTTTCTGTTCAT............................................................................................................... 23 0 19 0.05 1 1 0 0 0
............................................................................................ATACCATATTCCAACTCGCTTACTTGT.................................................................................................................................... 27 1 19 0.05 1 0 1 0 0
.....................................................................................................................GTCTTTCAAGTTTTTCTGTTCATA.............................................................................................................. 24 0 19 0.05 1 1 0 0 0
.......................................................................GGTTTCAGACTGTAGAAGTGT............................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
..................................................................................................................CGTGTCTTTCAAGTTTTTCTGT................................................................................................................... 22 0 20 0.05 1 1 0 0 0
...............................................................................ACTGTAGAAGTGTATACCATATTCCAACT............................................................................................................................................... 29 0 20 0.05 1 1 0 0 0
............................................................................CAGACTCTAGAAGTGTATA............................................................................................................................................................ 19 1 20 0.05 1 1 0 0 0
.......................................................................................................................CTTTCAAGTTTTTCTGTTCAT............................................................................................................... 21 0 20 0.05 1 1 0 0 0
..................................................................................GTAGAAGTGTATACCATATTCCAACTCGC............................................................................................................................................ 29 0 20 0.05 1 1 0 0 0
.....................................................................................AAAGTGTATACCATATTCCAACTCGCT........................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
.......................................................................................................................CTTTCAAGTTTTTCTGTTCATAAT............................................................................................................ 24 0 20 0.05 1 0 1 0 0
..........................................................................TTCAGACTGTAGAAGTGTGTACCATAT...................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
..........................................................................TTCAGACTGTAGAAGTGTATACCATA....................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
..............................................................................GACTGTAGAAGTGTATACCATATT..................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
..............................................................................GACTGTAGAAGTGTATACCATATTCCA.................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0
...........................................................................................TATACCATATTCCAACTCGCTTACG....................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
......................................................................................CCCTGTATACCATATTCCAACTCGCTT.......................................................................................................................................... 27 3 20 0.05 1 1 0 0 0
..................................................................................CTAGGAGTGTATACCATATTC.................................................................................................................................................... 21 2 20 0.05 1 0 0 1 0
.........................................................................................AGTATACCATACTCCAACTCGCTTACGT...................................................................................................................................... 28 2 20 0.05 1 1 0 0 0
............................................................................................ATACCATATTCCAACTCGCTTACGC...................................................................................................................................... 25 1 20 0.05 1 1 0 0 0
.......................................................................................AGAGTATACCATACTCCAACTCGCT........................................................................................................................................... 25 2 20 0.05 1 1 0 0 0
.....................................................................................GAAGTGTATACCATATTCCAACTCGC............................................................................................................................................ 26 0 20 0.05 1 1 0 0 0
....................................................................................AGAAGTGTATACCATATTCCAACTCGC............................................................................................................................................ 27 0 20 0.05 1 1 0 0 0
..........................................................................................GTATACCATATTCCAACTTG............................................................................................................................................. 20 1 20 0.05 1 1 0 0 0
.......................................................................................................................................................................................GTACACATATTCAACACCTT................................................ 20 3 20 0.05 1 1 0 0 0
....................................................................................AGAAGCGTATACCATATTCCAACTCGCT........................................................................................................................................... 28 1 20 0.05 1 1 0 0 0
..................................................................................GTAGAAGTGTATACCATATTCCAAC................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0
......................................................................................AAGTGTATACCATATTCCAACTCGCTT.......................................................................................................................................... 27 0 20 0.05 1 0 1 0 0
..................................................................................GTAGAAGTGTATACCATATTCCAACT............................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
......................................................................................AAGTGTATACCATATTCCAACTCGCT........................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
....................................................................................AGAAGTGTATACCATATTCCAACT............................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
........................................................................GTTTCAGACTGTAGAAGTGTAT............................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0
...........................................................................TCAGACTGTAGAAGTGTATACCATAT...................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000003720:4837-5087 + dwi_299 TAGAAG---AAGC-------------AGCAGCGACAAGTGTGACT----G-----------------GAGAT--GCCTCCTCCGTCAAGGTATTAGGAATACATTGGGATCCAAAGTCTGACATCTTCACATATGGTATAAGGTTGAGCGAATGCACAGAAAGTTCAAAAAGACAAGTATTATCAGACTTT-----AACTTTTAATAAACCAATAAGTC------------TGCTCCTCCATGTGTATAAGTTTTGAGATTCTTCATCTTATAACAACTGATTGTACGCATTGGATTAGTC-----------------------------CAATTT
droMoj3 scaffold_6495:76986-77132 - AAGCAC---CGCG-------------CAAGG---TGAT----AGAGTCAAC-----------------ATGTCAACAGCAACATCAAAGGTATTAGGACTACATTGGGATCCTGGAGAAGACAACCTTGCATACAACATTGTATTATCGGAAACTGCAAGCTGCACAAAGCGACAAGTGCTATCCGA-----------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_18:13212-13323 + CAAATG---TTAA-------------G--CG-------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----AATTTTCAATAGCCCAATATGTG------------TG---CTACAAGTGCACACATTTTGAGACTGCTCATCTAAATTAAGCTGATTGTAAGCATTTGACAGGTC-----------------------------AAGTTT
droPer2 scaffold_1072:3997-4164 + TATAGA---AGGC-------------ATTAGAGATGAC----CAAGTAAATAAAGTATTAACCATTGAAGAG--AATGAATCCGTCAAAACATTAGGACTACAATGGGAACCGGTTAAAGACGAGTTTAGGTTTAGTTTCCACTATGAACCAATTAAGAAAAATAACAAAAGAATAGTATTATCTAC--------------------------------------------------------------------------------------------------------------------------------------------------CTT
droAna3 scaffold_13127:45413-45654 + GAGACA---ACAA-------------TCACAAACA------------ACACATCATACAGTCCACTC-------GAAACTACGAACAAGGTTTTGGGAATTCATTGGCAACCGCACACGGACACATTGCCATACAAGGTATCTTTGCCCAGCGAGGAAAAGATTACAAAACGGCAAGTTTTATCAGATGTGTCTCGCC---------------TTTTCGACCCACTTGGATTGCTGG--------------------------------------------CTCCAGTGGTTATACAATTCAAAATCCTGTTCCAACAACTTTGGGTTCTCAACTT
droBip1 scf7180000391573:7434-7582 - GAGACG---CTAT-------------CAGCACGGGAAACGCACGA-------------------GTA-------CAAGATTCGATAAAGGTTCTTGGAATTTACTGGAATCCAACCGACGACACGCTGATGTACCAAACCGGCTTGACATCAAATCCGAGCTGCACTAAAAGGCAAATCCTCTCAGACG-------------------------------------------------------------------------------------------------------------------------------------------------TT
droKik1 scf7180000301600:20132-20229 + TTGACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATAAACCTATGTGTG------------TG---CTCCAAGTACACATTCTTTGTGAACTTTCATCTAGCTGTAATTGATTATATGCATTACTCAAGTC-----------------------------TAGCTT
droFic1 scf7180000453887:719-860 + AGCAAC---CAAA-------------GGTCAAGGCAAG-----------G-----------------AACCC--AATTCGGCAGCAAAGGTTCTTGGCATTCATTGGGATCCGCACGAAGATACATTATCATTCAAGGTGTCCCTCTCAGCAAATCCACGCAACACCAAACGACAAGTGCTGTCGGAC----------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490987:80462-80611 + TCTGAAGCAACGCTCACT--------TCTGAAGGAAAA-----------G-----------------GATTC--CATTCAACAGCGAAGATTCTTGGCATCCATTGGGATCCAAAGCAAGATACGCTCTCATTCAAAGTTTGCCTTTTATCAAATCCGAAGAACTCTAAGCGACAAGTGCTGTCTGAC----------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000773127:10720-10913 - AAGACG---AGCT-------------CCAAA---T-------------------------------A-------ACCAGTGCGGTTAAAGTTTTAGGAATGCTATGGAATCCCCAAGACGACATCCTGTCCTACAAAGCTTCTCTTTCAAGGGAGCCAGATGCTACTAAACGGCAAGTATTGTCAGATGTCTTACGAA---------------TTTTTGATCCTCTAGGTATTCTGG-------------------------------------------CCCCTGT-GGTAGTACAGTTCAAGAT--------------------------CCTT
droBia1 scf7180000301766:5249-5382 + CAGATG---ATAC-------------CGACGCA------------------------------------CAA--TTGTCGCCAGTTAAGGTTCTAGGACTATACTGGCATCCTGGCAAAGACATTTTAACTTACAACGTATGCCTAGTGGCAAATCCTGAATGCACCAAGAGGCAAGTCTTGTCCGAC----------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415021:8839-8978 + CACGAG---AGAC--AA-GGGGAGCTTCCA----------------------------------ATA-------ACTAGTGCGGTGAAGGTTTTAGGAATGCATTGGAATCCCCAAGACGACGTCCTGTCCTACAAGACTTCACTTTCCACGGAAGCAGAAGCTACTAAACGGCAAGTATTGTCAGA-----------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409691:6657-6784 + CGGAGG---ATAA-------------CAA--------G--------TATTC-----------------ATCT--TAATCATCAATCAAGGTTCTGG-GCTGCATTGGCACCTTAAGAATGACACATTGTCGTACACTGTGAATCTAACAAAGAGTACAA-------ATGCAGGCAAGTGTTGTCGGA-----------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3RHet:195697-195813 + AAACAAACATTGC-------------AATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-----TACTTTTAAAAGACCAATGTGTG------------TG---CTCCAAGTACATCATAGTTGAGATTCTTCATCTAAGTGTAGTTGATTATGTGCGTTGCTTATATC-----------------------------AAGCTT
droSim2 node_93836:11851-11945 + TTTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAATACCAATTTATGA-----------TG---CTCC----ACATATTAGTTGAGATTCTTCATCTAAGTGTAGTTGATTACATGCGTTGCTTAAATC-----------------------------AAGCTT
droSec2 scaffold_60:58270-58364 - TTTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAAGACCAATGTGTG------------T------CCAAGTACATCTTAGTTGAGATTCCCAATCTAAGTGTAACTGATTATATGCGTTCCTTAAATC-----------------------------AAGCTT
droYak3 2L:20708167-20708263 + ACGCCT---A-----------------------------------------------------------------TTAAAGCGGTCAAGGTTTTAGGAATACAATGGGAATCCTATG--------------------------CTTTCTGCACAACGGAAAATTACCAAACGGCAAGTATTGTCAAACA-------------------------------------------------------------------------------------------------------------------------------------------------TT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TAGAAG---AAGC-------------AGCAGCGACAAGTGTGACT----G-----------------GAGAT--GCCTCCTCCGTCAAGGTATTAGGAATACATTGGGATCCAAAGTCTGACATCTTCACATATGGTATAAGGTTGAGCGAATGCACAGAAAGTTCAAAAAGACAAGTATTATCAGACTTT-----AACTTTTAATAAACCAATAAGTC------------TGCTCCTCCATGTGTATAAGTTTTGAGATTCTTCATCTTATAACAACTGATTGTACGCATTGGATTAGTC-----------------------------CAATTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................AAGTCTGACATCTTCACATATGGTA......................................................................................................................................................................................................25200.15303000
.............................AGCGACAAGTGTGACT----G-----------------GAGAT--GCCT..................................................................................................................................................................................................................................................................26150.13200020
............C-------------AGCAGCGACAAGTGTGACT----G-----------------.............................................................................................................................................................................................................................................................................21170.12200020
.................................ACAAGTGTGACT----G-----------------GAGAT--GCC...................................................................................................................................................................................................................................................................21170.12220000
.................................................................................................................AAGTCTGACATCTTCACATATGG........................................................................................................................................................................................................23200.10202000
..........................................................................................................................................TAAGGTTGAGCGAATGCACAGAAAGTT...........................................................................................................................................................................27140.07100010
..........................AGCAGCGACAAGTGTGACT----G-----------------GA...........................................................................................................................................................................................................................................................................22170.06101000
...................................AAGTGTGACT----G-----------------GAGAT--GCCT..................................................................................................................................................................................................................................................................20170.06101000
.......................................................................................................................................................ATGCACAGAAAGTTCAAAAAGACAAGTAT............................................................................................................................................................29170.06101000
.AGAAG---AAGC-------------AGCAGCGACAAGTG........................................................................................................................................................................................................................................................................................................23170.06101000
..................................CAAGTGTGACT----G-----------------GAGAT--GCCTCC................................................................................................................................................................................................................................................................23170.06100001
..................................................................................................................................................AGCGAATGCACAGAAAGTTCAAAAAG....................................................................................................................................................................26170.06100010
..................................CAAGTGTGACT----G-----------------GAGAT--GCCTC.................................................................................................................................................................................................................................................................22170.06101000
..................................CAAGTGTGACT----G-----------------GAGAT--GCCT..................................................................................................................................................................................................................................................................21170.06110000
................................GACAAGTGTGACT----G-----------------GAGAT--GCCTCC................................................................................................................................................................................................................................................................25170.06101000
....................................................................................................................................................CGAATGCACAGAAAGTTCAAAAAGACA.................................................................................................................................................................27180.06101000
.........................................................................................................................................ATAAGGTTGAGCGAATGCACAGA................................................................................................................................................................................23180.06101000
.......................................................................................................................................................ATGCACAGAAAGTTCAAAAAGACAAGT..............................................................................................................................................................27190.05100010
........................................................................................................................................................TGCACAGAAAGTTCAAAAAGACAAG...............................................................................................................................................................25190.05100010
.................................................................................................................................CATATGGTATAAGGTTGAGC...........................................................................................................................................................................................20200.05100010
..............................................................................................................CCAAAGTCTGACATCTTCACATATGG........................................................................................................................................................................................................26200.05101000
.......................................................................................................................GACATCTTCACATATGGTATAAGGT................................................................................................................................................................................................25200.05100010
........................................................................................................................................................TGCACAGAAAGTTCAAAAAGT...................................................................................................................................................................21200.05100010
droMoj3
AAGCAC---CGCG-------------CAAGG---TGAT----AGAGTCAAC-----------------ATGTCAACAGCAACATCAAAGGTATTAGGACTACATTGGGATCCTGGAGAAGACAACCTTGCATACAACATTGTATTATCGGAAACTGCAAGCTGCACAAAGCGACAAGTGCTATCCGA-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................GAGAAGACAACCTTGCATACAACATT....................................................................................................................................................................................................26150.6710500032
..................................................................................................................GAGAAGACAACCTTGCATACAACATTG...................................................................................................................................................................................................27150.538600002
................................................AAC-----------------ATGTCAACAGCAACATCAAAGG......................................................................................................................................................................................................................................................25100.404400000
..................................................................................................................GAGAAGACAACCTTGCATACAACA......................................................................................................................................................................................................24150.335300020
..................................................................................................................GAGAAGACAACCTTGCATACAACAT.....................................................................................................................................................................................................25150.274300010
..................................................................................................................GAGAAGACAACCTTGCATACAAC.......................................................................................................................................................................................................23150.274200020
................................................................................................................................................TATCGGAAACTGCAAGCTGCACAAA.......................................................................................................................................................................2540.251100000
.............................................................................................................................................TATTATCGGAAACTGCAAGCTGCACAA........................................................................................................................................................................2740.251000001
.............................................................................................................................................TATTATCGGAAACTGCAAGCTGCAC..........................................................................................................................................................................2540.251100000
.............................................................................................................................................TATTATCGGAAACTGCAAGCTGCACC.........................................................................................................................................................................2640.251100000
.............................................................................................................................................TATTATCGGAAACTGCAAGCTGC............................................................................................................................................................................2340.251000010
................................................AAC-----------------ATGTCAACAGCAACATCAAAGGTA....................................................................................................................................................................................................................................................27100.202200000
...................................................................................................................AGAAGACAACCTTGCATACAACATTG...................................................................................................................................................................................................26150.203300000
................................................AAC-----------------ATGTCAACAGCAACATCAAAGGTAT...................................................................................................................................................................................................................................................2870.141100000
..................................................................................................................GAGAAGACAACCTTGCATACAACATTGT..................................................................................................................................................................................................28150.132200000
..............................................TCAAC-----------------ATGTCAACAGCAACATCAAAGG......................................................................................................................................................................................................................................................2780.131100000
....................................................................................CAAAGGTATTAGGACTACATTGGGA...................................................................................................................................................................................................................................2580.131100000
.............................................................................................................................................................AAGCTGCACAAAGCGACAAGTGCT...........................................................................................................................................................24100.101000001
..........................................................................................................................................................TGCAAGCTGCACAAAGCGAC..................................................................................................................................................................20100.101000100
.................................................................................................................................................................TGCACAAAGCGACAAGTGCTATCCGA-----------------------------------------------------------------------------------------------------------------------------------------------------26100.101100000
...........................................................................................................................................................GCAAGCTGCACAAAGCGACAAGTG.............................................................................................................................................................24100.101100000
..........................................................................................................................................................TGCAAGCTGCACAAAGCGACAAGTGC............................................................................................................................................................26100.101100000
................................................AAC-----------------ATGTCAACAGCAACATCAAAG.......................................................................................................................................................................................................................................................24110.091100000
....................................................................ATGTCAACAGCAACATCAAAGG......................................................................................................................................................................................................................................................22130.081100000
........................................................................CAACAGCAACATCAAAGGT.....................................................................................................................................................................................................................................................19140.071100000
...............................................................................................................CTGGAGAAGACAACCTTGCATACA.........................................................................................................................................................................................................24150.071100000
...................................................................................................TACATTGGGATCCTGGAGAAG........................................................................................................................................................................................................................21150.071100000
...................................................................................................................AGAAGACAACCTTGCATACAACAT.....................................................................................................................................................................................................24150.071100000
......................................................................................................................AGACAACCTTGCATACAACA......................................................................................................................................................................................................20150.071100000
..................................................................................................................GAGAAGACAACCTTGCATACAACATTC...................................................................................................................................................................................................27150.071100000
..................................................................................................................GAGAAGACAACCTTGCATACA.........................................................................................................................................................................................................21150.071100000
...............................................................................................................CTGGAGAAGACAACCTTGCATACAAC.......................................................................................................................................................................................................26150.071000010
.............................................................................................................TCCTGGAGAAGACAACCTTGC..............................................................................................................................................................................................................21160.061100000
..................................................................................................................GAGAAGACAACCTTGCATAC..........................................................................................................................................................................................................20160.061100000
........................................................................................................TGGGATCCTGGAGAAGACAACCTTGC..............................................................................................................................................................................................................26160.061100000
dp5
CAAATG---TTAA-------------G--CG-------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-----AATTTTCAATAGCCCAATATGTG------------TG---CTACAAGTGCACACATTTTGAGACTGCTCATCTAAATTAAGCTGATTGTAAGCATTTGACAGGTC-----------------------------AAGTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................TGCACACATTTTGAGACTGCTCATC....................................................................2521.0020200000000
.................................................................................................................................................................................................................................................................................TAAGCTGATTGTAAGCATTTGACAGGTC-----------------------------......2830.6720000000200
.......................................................................................................................................................................................................TTTCAATAGCCCAATATGTG------------TG---CT..................................................................................................2420.5010100000000
.........................................................................................................................................................................................................TCAATAGCCCAATATGTG------------TG---....................................................................................................2020.5010100000000
..............................................................................................................................................................................................................................................................TGAGACTGCTCATCTAAATTAAGCAA........................................................2620.5010100000000
.......................................................................................................................................................................................................TTTCAATAGCCCAATATGTG------------T........................................................................................................2120.5010100000000
.................................................................................................................................................................................................................................................................................TAAGCTGATTGTAAGCATTTGACAGG.....................................2630.3310000000100
.........................................................................................................................................................................................................................................................................ATCTAAATTAAGCTGATTGTA..................................................2130.3310100000000
............................................................................................................................................................................................................................................................................TAAATTAAGCTGATTGTAAG................................................2030.3310100000000
............................................................................................................................................................................................................................................................................................TAAGCATTTGACAGGTC-----------------------------AAGTT.2250.2010000000100
....................................................................................................................................................................................................................................................................................GCTGATTGTAAGCATTTGACAGGTC-----------------------------AA....2750.2010100000000
.......................................................................................................................................................................................................................................................................................GATTGTAAGCATTTGACAGGT....................................2150.2010100000000
...................................................................................................................................................................................................................................................................................AGCTGATTGTAAGCATTTGACAGGT....................................2550.2010000000100
............................................................................................................................................................................................................................................................................................TAAGCATTTGACAGGTC-----------------------------AAGTTT2350.2010100000000
droPer2
TATAGA---AGGC-------------ATTAGAGATGAC----CAAGTAAATAAAGTATTAACCATTGAAGAG--AATGAATCCGTCAAAACATTAGGACTACAATGGGAACCGGTTAAAGACGAGTTTAGGTTTAGTTTCCACTATGAACCAATTAAGAAAAATAACAAAAGAATAGTATTATCTAC--------------------------------------------------------------------------------------------------------------------------------------------------CTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................AG--AATGAATCCGTCAAAAC.....................................................................................................................................................................................................................................................19200.255500000
TATAGA---AGGC-------------ATTAGAGATG............................................................................................................................................................................................................................................................................................................20200.051000001
............................................................................................TTAGGACTACAATGGGAACCG...............................................................................................................................................................................................................................21200.051000001
..................................................................................CGTCAAAACATTAGGACTACAATGG.....................................................................................................................................................................................................................................25200.051010000
..................................................................................CGTCAAAACATTAGGACTACAATG......................................................................................................................................................................................................................................24200.051010000
droAna3
GAGACA---ACAA-------------TCACAAACA------------ACACATCATACAGTCCACTC-------GAAACTACGAACAAGGTTTTGGGAATTCATTGGCAACCGCACACGGACACATTGCCATACAAGGTATCTTTGCCCAGCGAGGAAAAGATTACAAAACGGCAAGTTTTATCAGATGTGTCTCGCC---------------TTTTCGACCCACTTGGATTGCTGG--------------------------------------------CTCCAGTGGTTATACAATTCAAAATCCTGTTCCAACAACTTTGGGTTCTCAACTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................TGGGAATTCATTGGCAACCGCAC............................................................................................................................................................................................................................23200.357250000
...................................................................................................TTCATTGGCAACCGCACACGGACACA...................................................................................................................................................................................................................26200.204220000
.......................................................................................................................................................................................................................TTCGACCCACTTGGATTGCTGG--------------------------------------------CTCC...................................................26200.153030000
........................................................................................................................................................................................................................TCGACCCACTTGGATTGCTGG--------------------------------------------CTCC...................................................25200.153030000
.............................................................................................TGGGAATTCATTGGCAACCGCA.............................................................................................................................................................................................................................22200.102110000
............................................................................................TTGGGAATTCATTGGCAACCGC..............................................................................................................................................................................................................................22200.102110000
................................................................................................GAATTCATTGGCAACCGCACACGGACAC....................................................................................................................................................................................................................28200.102200000
...............................................................................................GGAATTCATTGGCAACCGCACACGG........................................................................................................................................................................................................................25200.102200000
.............................................................................................TGGGAATTCATTGGCAACCGCACACGG........................................................................................................................................................................................................................27200.102200000
...................................................................................................TTCATTGGCAACCGCACACGGAC......................................................................................................................................................................................................................23200.102020000
.................................................ACATCATACAGTCCACTC-------GAAACTAC..............................................................................................................................................................................................................................................................26200.102020000
.....................................................................................CAAGGTTTTGGGAATTCATTGGCAACC................................................................................................................................................................................................................................27200.102020000
.......................................................................................AGGTTTTGGGAATTCATTGGCAACCGC..............................................................................................................................................................................................................................27200.102200000
................................................................................................GAATTCATTGGCAACCGCACAC..........................................................................................................................................................................................................................22200.051010000
..................................................CATCATACAGTCCACTC-------GAAACTACGAA...........................................................................................................................................................................................................................................................28200.051100000
.....................................................................................................CATTGGCAACCGCACACGGACAC....................................................................................................................................................................................................................23200.051010000
.......................................................TACAGTCCACTC-------GAAACTACGAACAAGT......................................................................................................................................................................................................................................................28200.051010000
...............................................................................TACGAACAAGGTTTTGGGAATTCATTGG.....................................................................................................................................................................................................................................28200.051100000
GAGACA---ACAA-------------TCACAAACA------------ACACATCA.........................................................................................................................................................................................................................................................................................27200.051100000
........................................................................................................................................................................................................................TCGACCCACTTGGATTGCTGG--------------------------------------------CTC....................................................24200.051100000
.....A---ACAA-------------TCACAAACA------------ACACATCATA.......................................................................................................................................................................................................................................................................................24200.051100000
........................................................................................................TGGCAACCGCACACGGACACATT.................................................................................................................................................................................................................23200.051100000
..............................................................................................................................................................................................................................CACTTGGATTGCTGG--------------------------------------------CTCCAGT................................................22200.051100000
..........................................................................................TTTTGGGAATTCATTGGCAACCGCA.............................................................................................................................................................................................................................25200.051010000
...................................................................................................TTCATTGGCAACCGCACACGGACACATT.................................................................................................................................................................................................................28200.051010000
.......................................................TACAGTCCACTC-------GAAACTACGAAC..........................................................................................................................................................................................................................................................24200.051010000
..............................................................................................GGGAATTCATTGGCAACCG...............................................................................................................................................................................................................................19200.051100000
............................................................................................TTGGGAATTCATTGGCAACCGCAC............................................................................................................................................................................................................................24200.051100000
..............................AAACA------------ACACATCATACAGTCCACTC-------GA....................................................................................................................................................................................................................................................................27200.051100000
............................................................................................TTGGGAATTCATTGGCAACCGCACAC..........................................................................................................................................................................................................................26200.051100000
.......................................................................................AGGTTTTGGGAATTCATTGGCAACCG...............................................................................................................................................................................................................................26200.051100000
...................................................................................................TTCATTGGCAACCGCACACGGACACAT..................................................................................................................................................................................................................27200.051010000
...................................................................................................TTCATTGGCAACCGCACACGGACAC....................................................................................................................................................................................................................25200.051010000
.................................................ACATCATACAGTCCACTC-------GAAACTACG.............................................................................................................................................................................................................................................................27200.051100000
.............................................................................................TGGGAATTCATTGGCAACCGCACT...........................................................................................................................................................................................................................24200.051100000
.................................................................................................AATTCATTGGCAACCGCACACGGAC......................................................................................................................................................................................................................25200.051100000
.....................................................CATACAGTCCACTC-------GAAACTACGAAC..........................................................................................................................................................................................................................................................26200.051010000
.......................................................................................................................................................................................................................TTCGACCCACTTGGATTGCTGG--------------------------------------------CTC....................................................25200.051010000
...........................................................................AAACTACGAACAAGGTTTTGGG...............................................................................................................................................................................................................................................22200.051100000
......................................................ATACAGTCCACTC-------GAAACTACG.............................................................................................................................................................................................................................................................22200.051100000
...........................................................GTCCACTC-------GAAACTACGAACAAGGTTT...................................................................................................................................................................................................................................................27200.051100000
................................................................CTC-------GAAACTACGAACAAGGTTTTG.................................................................................................................................................................................................................................................24200.051100000
.................................................................................................AATTCATTGGCAACCGCACACGGACAC....................................................................................................................................................................................................................27200.051010000
.............................................................................................TGGGAATTCATTGGCAACCGCACAC..........................................................................................................................................................................................................................25200.051100000
.................................................................................................................................................................................................................................TTGGATTGCTGG--------------------------------------------CTCCAGTGGTTAT..........................................25200.051010000
....CA---ACAA-------------TCACAAACA------------ACACATCATA.......................................................................................................................................................................................................................................................................................25200.051100000
...............................................................................TACGAACAAGGTTTTGGGAATTCAT........................................................................................................................................................................................................................................25200.051010000
.................................................ACATCATACAGTCCACTC-------GAAACTACGAA...........................................................................................................................................................................................................................................................29200.051100000
..................................................CATCATACAGTCCACTC-------GAAACTACG.............................................................................................................................................................................................................................................................26200.051100000
..........................................................................................TTTTGGGAATTCATTGGCAACCGCACACG.........................................................................................................................................................................................................................29200.051001000
............................................................................................TTGGGAATTCATTGGCAACCGCACACG.........................................................................................................................................................................................................................27200.051100000
.....A---ACAA-------------TCACAAACA------------ACACATCATACAGT...................................................................................................................................................................................................................................................................................28200.051001000
.....A---ACAA-------------TCACAAACA------------ACACATCATAC......................................................................................................................................................................................................................................................................................25200.051010000
.................................................ACATCATACAGTCCACTC-------GAAAC.................................................................................................................................................................................................................................................................23200.051010000
..................................................CATCATACAGTCCACTC-------GAAACTAC..............................................................................................................................................................................................................................................................25200.051100000
................................................................................................GAATTCATTGGCAACCGCACACGGACA.....................................................................................................................................................................................................................27200.051100000
.................................CA------------ACACATCATACAGTCCACTC-------GAAA..................................................................................................................................................................................................................................................................26200.051100000
.........................................................................................GTTTTGGGAATTCATTGGCAACCGC..............................................................................................................................................................................................................................25200.051010000
..........................................................................................................................................................................................................................GACCCACTTGGATTGCTGG--------------------------------------------CTCC...................................................23200.051010000
....................................................................................................TCATTGGCAACCGCACACGGACAC....................................................................................................................................................................................................................24200.051100000
...............................................................................................GGAATTCATTGGCAACCGCACACGGA.......................................................................................................................................................................................................................26200.051010000
droBip1
GAGACG---CTAT-------------CAGCACGGGAAACGCACGA-------------------GTA-------CAAGATTCGATAAAGGTTCTTGGAATTTACTGGAATCCAACCGACGACACGCTGATGTACCAAACCGGCTTGACATCAAATCCGAGCTGCACTAAAAGGCAAATCCTCTCAGACG-------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droKik1
TTGACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATAAACCTATGTGTG------------TG---CTCCAAGTACACATTCTTTGTGAACTTTCATCTAGCTGTAATTGATTATATGCATTACTCAAGTC-----------------------------TAGCTTSizeHit CountTotal NormTotal
No Reads
droFic1
AGCAAC---CAAA-------------GGTCAAGGCAAG-----------G-----------------AACCC--AATTCGGCAGCAAAGGTTCTTGGCATTCATTGGGATCCGCACGAAGATACATTATCATTCAAGGTGTCCCTCTCAGCAAATCCACGCAACACCAAACGACAAGTGCTGTCGGAC----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TCTGAAGCAACGCTCACT--------TCTGAAGGAAAA-----------G-----------------GATTC--CATTCAACAGCGAAGATTCTTGGCATCCATTGGGATCCAAAGCAAGATACGCTCTCATTCAAAGTTTGCCTTTTATCAAATCCGAAGAACTCTAAGCGACAAGTGCTGTCTGAC----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAGACG---AGCT-------------CCAAA---T-------------------------------A-------ACCAGTGCGGTTAAAGTTTTAGGAATGCTATGGAATCCCCAAGACGACATCCTGTCCTACAAAGCTTCTCTTTCAAGGGAGCCAGATGCTACTAAACGGCAAGTATTGTCAGATGTCTTACGAA---------------TTTTTGATCCTCTAGGTATTCTGG-------------------------------------------CCCCTGT-GGTAGTACAGTTCAAGAT--------------------------CCTTSizeHit CountTotal NormTotal
No Reads
droBia1
CAGATG---ATAC-------------CGACGCA------------------------------------CAA--TTGTCGCCAGTTAAGGTTCTAGGACTATACTGGCATCCTGGCAAAGACATTTTAACTTACAACGTATGCCTAGTGGCAAATCCTGAATGCACCAAGAGGCAAGTCTTGTCCGAC----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CACGAG---AGAC--AA-GGGGAGCTTCCA----------------------------------ATA-------ACTAGTGCGGTGAAGGTTTTAGGAATGCATTGGAATCCCCAAGACGACGTCCTGTCCTACAAGACTTCACTTTCCACGGAAGCAGAAGCTACTAAACGGCAAGTATTGTCAGA-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CGGAGG---ATAA-------------CAA--------G--------TATTC-----------------ATCT--TAATCATCAATCAAGGTTCTGG-GCTGCATTGGCACCTTAAGAATGACACATTGTCGTACACTGTGAATCTAACAAAGAGTACAA-------ATGCAGGCAAGTGTTGTCGGA-----------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AAACAAACATTGC-------------AATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-----TACTTTTAAAAGACCAATGTGTG------------TG---CTCCAAGTACATCATAGTTGAGATTCTTCATCTAAGTGTAGTTGATTATGTGCGTTGCTTATATC-----------------------------AAGCTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................TCTAAGTGTAGTTGATTATGTGCGT.............................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100040000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................TTCATCTAAGTGTAGTTGATTATGTGC...............................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................GTAGTTGATTATGTGCGTTGC..........................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000002000000
..............................................................................................................................................................................................................................................................TGAGATTCTTCATCTAAGTGTAGTT.........................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TTAAAAGACCAATGTGTG------------TG---C...................................................................................................2114.0040000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TACATCATAGTTGAGATTCTTCATC....................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TACTTTTAAAAGACCAATGTGTG------------TG---C...................................................................................................2613.0030000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TAAGTGTAGTTGATTATGTGC...............................................2113.0030000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CATCTAAGTGTAGTTGATTATGTG................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TTCATCTAAGTGTAGTTGATTATGTGCGT.............................................2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TGATTATGTGCGTTGCTTATA.....................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TAAAAGACCAATGTGTG------------TG---CTCCAAG.............................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TCATCTAAGTGTAGTTGATTATGTGC...............................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CTTTTAAAAGACCAATGTGTG------------TG---C...................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................AGTGTAGTTGATTATGTGCGT.............................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TACTTTTAAAAGACCAATGTGTG------------T........................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................ATGTGCGTTGCTTATATC-----------------------------AAG...2112.0020000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TTGAGATTCTTCATCTAAGTGTAGTT.........................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000
......................................................................................................................................................................................................................................................................................TGATTATGTGCGTTGCTTATATC-----------------------------AAGC..2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TAAGTGTAGTTGATTATGTGCGTTGC..........................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000
............................................................................................................................................................................................................................................CTCCAAGTACATCATAGTTG................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
...CAAACATTGC-------------AATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-----T...........................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGC-------------AATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-----TACTTTTAAAAGACCAA...........................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TG---CTCCAAGTACATCATAGTTGAGAT............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................ATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-----TACTTTTAAAAGAC..............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TCCAAGTACATCATAGTTGAGATTCTTCA......................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
AAACAAACATTGC-------------AATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------G...................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AAGTACATCATAGTTGAGATT...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CATCTAAGTGTAGTTGATTATG..................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TCTAAGTGTAGTTGATTATGTGCGTT............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GATTATGTGCGTTGCTTATATC-----------------------------......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................TGTAGTTGATTATGTGCGTTGCTTATA.....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TCTAAGTGTAGTTGATTATGTGT...............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...CAAACATTGC-------------AATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-----TACT........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................ATCTAAGTGTAGTTGATTATGTGC...............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................ATCTAAGTGTAGTTGATTATGTGCGT.............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AAAAGACCAATGTGTG------------TG---CTCCAAG.............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................CTAAGTGTAGTTGATTATGTG................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................CAAGTACATCATAGTTGAGATT...........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ACTTTTAAAAGACCAATGTGTG------------T........................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
AAACAAACATTGC-------------AATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-----............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................AAAGACCAATGTGTG------------TG---CTCC................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TTATGTGCGTTGCTTATATC-----------------------------AAG...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................GATTCTTCATCTAAGTGTAGT..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TAGTTGATTATGTGCGTTGCTTATA.....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AAGTGTAGTTGATTATGTGCG..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TGTAGTTGATTATGTGCGTTGCTA........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................TG---CTCCAAGTACATCATAGTTGAGATT...........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AAAAGACCAATGTGTG------------TG---CTCC................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................T-----TACTTTTAAAAGACCAATGTGTG------------T........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CATCTAAGTGTAGTTGATTATGTGC...............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TCTTCATCTAAGTGTAGTTGATTATG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................ACTTTTAAAAGACCAATGTGTG------------TG---C...................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TTATGTGCGTTGCTTATATC-----------------------------AAGC..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TTCATCTAAGTGTAGTTGATTATGTT................................................2611.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................AGTTGATTATGTGCGTTGCTT........................................2140.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................TTGATTATGTGCGTTGCTTA.......................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................GTTGATTATGTGCGTTGCTTA.......................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................AGTTGATTATGTGCGTTGC..........................................1940.2510000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAATACCAATTTATGA-----------TG---CTCC----ACATATTAGTTGAGATTCTTCATCTAAGTGTAGTTGATTACATGCGTTGCTTAAATC-----------------------------AAGCTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................TACCAATTTATGA-----------TG---CTCC----ACATATT.....................................................................................2611.00100000000010000000
droSec2
TTTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAAAGACCAATGTGTG------------T------CCAAGTACATCTTAGTTGAGATTCCCAATCTAAGTGTAACTGATTATATGCGTTCCTTAAATC-----------------------------AAGCTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACGCCT---A-----------------------------------------------------------------TTAAAGCGGTCAAGGTTTTAGGAATACAATGGGAATCCTATG--------------------------CTTTCTGCACAACGGAAAATTACCAAACGGCAAGTATTGTCAAACA-------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 05/17/2015 at 10:45 PM