ID:

dwi_2957

 Coordinate:

scf2_1100000004921:684767-684917 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.7 -33.6 -33.6

Flybase annnotation

CDS [Dwil\GK22555-cds]; exon [dwil_GLEANR_5770:2]; intron [Dwil\GK22555-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGATAAACTAAGGAAAAGCCGAAGGCAAATGGCTAAGGCTACTGCAAATTGCATTCGATGCAGTGCAGAGCAGAGACTCAATCTGTGGGATGGGATTGAAAATGTATCTCTAGGGGGGTGGGGATAAGAAGCACAAATTATATGTTATACTATGTACTTACTTGTTTCATCACATAAATTGATCTCCATTTTCCCAATAGATCCCAACAACAATGTGGCCCCATCTGGAACAGCCTCCACAGCTGCTGGT
**************************************************((((((......))))))....(((((.(((((((........))))))).......))))).(((((((((((((..((((((.....((((((......))))))......)))))).............)))))))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
.................................................................................................................................................................................................................................CTGGAACAGCCTCCACAGC....... 19 0 2 1.00 2 1 0 1
........................................................................AGAGACTCAATCTGTGGGAT............................................................................................................................................................... 20 0 1 1.00 1 0 1 0
................................................................................................................................................................................................................CAACAATGTGGCCCCATCTGGAAC................... 24 0 2 0.50 1 1 0 0
.................................................................................................................................................................................................................AACAATGTGGCCCCATCTGG...................... 20 0 2 0.50 1 1 0 0
................................................................................................................................................................................................................CAATAATGTGGCCCCATCTGGA..................... 22 1 2 0.50 1 1 0 0
........................................................CGATGCAGTGCAGAGCAGA................................................................................................................................................................................ 19 0 2 0.50 1 0 1 0
...............................................................................................................................................................................................................................ATCTGGAACAGCCTCCACAGC....... 21 0 2 0.50 1 0 0 1
.............................................................................................................................................................................................................CAACAACAATGTGGCCCCATCTGGAAC................... 27 0 2 0.50 1 1 0 0
...................................................................................................................................................................................................................................GGAACAGCCTCCACAGCTGCTGGT 24 0 2 0.50 1 0 0 1
.........................................................................................................................................................................................................................GGCCCCATCTGGAACAGC................ 18 0 2 0.50 1 0 1 0
......................................................TGCAGTGCAGTGCAGAGCAGAGA.............................................................................................................................................................................. 23 3 10 0.10 1 0 1 0
........................GAAAAATGGCTAAGGCTA................................................................................................................................................................................................................. 18 2 17 0.06 1 1 0 0
...ATCAACTCAGGTAAAGCCG..................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0
....................................................................................GGTGGGATGGGATTGAGA..................................................................................................................................................... 18 2 20 0.05 1 1 0 0
....................................................................................................................GGGTTGGCATAAGACGCAC.................................................................................................................... 19 3 20 0.05 1 1 0 0

Anti-sense strand reads

TCCTATTTGATTCCTTTTCGGCTTCCGTTTACCGATTCCGATGACGTTTAACGTAAGCTACGTCACGTCTCGTCTCTGAGTTAGACACCCTACCCTAACTTTTACATAGAGATCCCCCCACCCCTATTCTTCGTGTTTAATATACAATATGATACATGAATGAACAAAGTAGTGTATTTAACTAGAGGTAAAAGGGTTATCTAGGGTTGTTGTTACACCGGGGTAGACCTTGTCGGAGGTGTCGACGACCA
**************************************************((((((......))))))....(((((.(((((((........))))))).......))))).(((((((((((((..((((((.....((((((......))))))......)))))).............)))))))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V117
male body		 V119
head
................................................................................................................................................................................................CGGGTTATCTAGGCCTGTTG....................................... 20 3 2 3.00 6 6 0 0 0
..................................................................................................................................................................................................GGTTATCTAGGCCTGTTG....................................... 18 2 2 1.00 2 2 0 0 0
.........................................................................................................................................................................................................................CGGGTATAGACCTTGTCGGA.............. 20 3 3 0.67 2 0 2 0 0
.................................................................................................................................................................................................GGGTTATCTAGGCCTGTTGC...................................... 20 3 3 0.33 1 0 0 1 0
................................................................................................................................................................................................CGGGTTATTTAGGCTTGTTG....................................... 20 3 20 0.20 4 2 0 0 2
.................................................................................................................................................................................................GGGTTATGTAGGCCTGTTG....................................... 19 3 19 0.16 3 3 0 0 0
..................................................................................................................................................................................................................................ACCTTGTAGTAGGTGTCAAC..... 20 3 18 0.06 1 1 0 0 0
.......................................................................................................................................................................................................TCTAGGGTTGTTGGCAGAC................................. 19 3 19 0.05 1 1 0 0 0
..................................................................................................................................................................................................GGTTATTTAGGCTTGTTG....................................... 18 2 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004921:684717-684967 - dwi_2957 AGGATAA-ACTAA-----------------------------------------------GGAAAAG-CC-------G-AAGGCAAATG--------------GCTAAGGCTACTGCAAA-------TTGCATTCGATGCAG---------TGCAGAGCA---------------------------------------GAGAC----TC-------------------------------------AATCTGTGGGATGGGATTGAAAATGTA-TCTCTAGGGGGGTGGG-GATAAGAAGCACAAATTAT-ATGTTATAC-------------------------------------------------------------------------------TATGTACTTACTTGTTTCATCACATAAATTGAT-C--------TCC-------ATT------TT-----CCCAATAGATCCCAACAACAATGTGGCCCCATCTGGAACAGCCTCCACAGCTGCTGGT
droVir3 scaffold_12855:1258681-1259017 + dvi_3390 GG--------------------------------------------------CATGTGGCAAAGCAG-CC-------GTGGTGAAGATTGCAATGCAA-TT--GCA------------AAGTT----TTTAAGTTTATGTGC---------GGC-GCACTGCATGCACCCGGCCTAAATTGAAAAGTGCTGCAGGGCAGCTCTGTAAGT-----------------CCGGGTAGGAGGGGAGCCGATTACGGCTCTTGCGGAATTGAATACGTAATCTCCCAGGA-TTAGCTGGTGAAATGTAA-AATTATTATAATACCAGCTTCAGACT----TGACTTAAACACTTATG--CATA------------------------------------CATATATATACGTATACT----------------------T--------TTT-------TCCTCATCATG-----TGCTGTAGATCCCAACAATAATGTGGCGCCACCGGACACGCCCTCAACGGCTGCTGGC
droMoj3 scaffold_6540:27006950-27007287 + AGGCTGC-AGTTA------------------GACACGT-------------GGCAAGTGGCAAGTGG-CATGCGGCAG-GGCGTAGATTGCAATGCAA-GT--GCA------------AAGTT----ATTCAGTTTATGTGG---------CG-AGCGTTGCATGCGACGGGCCTAAATTGAAA--TGCT---------GCCGG----CTCCTCCTGCAGGCGCTT------------------GC------ATGGGCAGAAATTGAATACGTAATCTCCCAGGA-TTAGCTGCTGAAATGTGA-AATTATTATAATGGCTT---ACTGCAGACTTGACTGTAA------------TA------------------------------------CTAATATATCTATATGCA----------------------TTTCTTTGCTTA-------TTGTCATTATG-----CGCGGCAGATCCCAACAATAATGTGGCGCCACCGGACACGCCCTCGACGGCTGCCGGC
droGri2 scaffold_8780:7200-7296 + TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT------------------ATG--TACT------------------------------------CTAATATATATGTATTGT----------------------A--------TT--------TAA------TT-----TCTTGCAGATCCCAACAACAATGTGGCACCACCGGACACGCCTTCAACCGCTGCTGGC
dp5 2:113597-113875 + GTATCAAA---AA---------------------------------------AGAAAAGCAAAGC-----------------GAAGATG--------------GCA------------AAGTTTTCCTTACAGTTTATGGAATGCACCTCCAGCAAAGTA--------------------------------------GTCGAGTAGAT-----------------A-------------------CGAGTAATACTGGGGAATTGAAAAAGTAATCTCCTGGGA-TTATG--------TGTGA-AATTGTAATGAGAGGCGGCGAGGGGT------------------TGC--TCTACGAAATTGGAGATATTTTGTGTTGGA-AATCGTTCTATATCTGATGCAT-----------------------------------------------TT------TC-----TCTTCCAGATCCCAACAATAACGTTGCCCCACCGAGTACGGCCTCAACGGCAGCCGGA
droPer2 scaffold_7:2905291-2905569 + GTATCAAA---AA---------------------------------------AGAAAAGCAAAGC-----------------GAAGATG--------------GCA------------AAGTTTTCCTTACAGTTTATGGAATGCACCTCTAGCAAAGTA--------------------------------------GTCGAGTAGAT-----------------A-------------------CGAGTAATACTGGGGAATTGAAAAAGTAATCTCCTGGGA-TTATG--------TGTGA-AATTGTAATGAGAGGCGGCGAGGGGT------------------TGC--TCTACGAAATTGGAGATATTTTGTGTTGGA-AATCCTTCTATATCTGATGTAT-----------------------------------------------TT------TC-----TCTTCCAGATCCCAACAATAACGTTGCCCCACCGAGTACGGCCTCAACGGCAGCCGGA
droAna3 scaffold_13340:14402103-14402434 - ACGACAGGACTAAGGACCAAGGACCACGGCGGGCTAGGAGCAGGT---GCGGCAAAATGCAAAAGAG-CC-------A-GG-GAATGTGGCA---AACTTGGGGGA------------AAATTTTCTTTTCACTTTCTGCCCGGCACC---AGCCAGGCT---------------------------------------GCAAG----AGC-----------------------------------AGGATAATATTGTGGAATTGAAAAAGTAATCTCCAGGGA-TTAGG--------TGTGA-AATTATAATGATAGGCCG--AGAGTT------------------CTTAGTTCT-----------------CACCTTCGAAAGGCGCCCACTAAGCTATTTGTCTTCT----------------------C--------TTC-------CCATT-TT-TTTGCGTTATTACAGATCCCAACAATAATGTCGCCCCACCTGGATATCCTTCGACAGCTGCGGGA
droBip1 scf7180000395971:763102-763406 + GGGGC-----------------------------AAGGTGCAGGT---GCGGAAAAATGCAAAAGAG-CC-------A-GG-GAATGTGGCA---AACTTGGGGGA------------AAATTTTCTTTTCACTTTCTGCCCGGCACCGGCAGCCTGGCT---------------------------------------GCAAG----TGCA-----------------------------------GGATAATATTGTGGAATTGAAAAAGTAATCTCCAGGGA-TTAGG--------TGTGA-AATTATAATGATAGGCCG--AGAGTT------------------CTCGGTTCT-----------------CACCTCCGAAAGCCGCCCACTAAGCTATTTGTCTTCT----------------------C--------TTC-------CAT-A-TT-TTTTCGTTATTACAGATCCCAACAATAATGTCGCCCCACCTGGATCGCCTTCGACAGCTGCGGGG
droKik1 scf7180000301923:129880-130128 - TGC------------------------------------------------AGAAAATGCAAAAGAG-CCTCCG---A-CG--AAGC-----------TTT--GCA------------AAGTTTTCTTTTCACTTTATGCCT---------CCGCCTTTA---------------------------------------GCCAG----TGCT--------------G-----------------GCTGGATAATATTGTGGAATTGAAAAAGTAATCTTCCGGGA-TTAGG--------TGTAA-AATTATAATGATAGGCC---AGAGTT------------------CTC--CTTA------------------------------------CTAAGCTATTTGTCTTCG-------------------GCTC--------CTC-------TTT------C------CTCCGTAGATCCCAATAACAATGTTGCTCCGCCCTCAACTCCTTCGACGGCTGCCGGA
droFic1 scf7180000453782:288720-288947 + C--------------------------------------------------GGAAAATGCAAAAAAG-CC-------G-GC-----------------------AA------------AAGTTTTCTTTTCACTTCGTGCCT---------TGCGAGGCA---------------------------------------GCCAG----TGCC--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCCCGGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CCCA------------------------------------CTAAGCTATTTGTCTTCC--------------------------------T--------TCG------CC-----CTTCGCAGATCCCGACAACAATGTGGCCCCGCCTTCCACGCCCTCCACTGCGTTGGGG
droEle1 scf7180000491194:1018882-1019120 - T--------------------------------------------------GGAAAATGCAAAAAAG-GC-------A-GG----------------------AGA------------AACTTTTCTTTTCACTTTATGCCTGGC------TACGACGCA---------------------------------------GCAAA----TGCA--------------A-------------------AGGATAATATTGTGGAATTGAAAAAGTAATCTACCTGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------C--------CTC-------TAC-C-TTTTT-----TGATGCAGATCCCAATAACAATGTGGCCCCTCCAACCACGTATTCGGTGGCAGCTGGA
droRho1 scf7180000777206:313700-313935 + GC------------------------------------------------CGGAAAATGCAAAAAAG-CC-------T-GG-----------------------CA------------AAGTTTTCTTTTCACTTTATGCCT---------GGCGACGCA---------------------------------------GCAAG----TGCA--------------A-------------------AGGATAATATTGTGGAATTGAAAAAGTAATCTACCTGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCA------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTTT----------------------C--------TGC----GTCTTC------CC-----CCCTGCAGATCCCAATAACAATGTGGCCCCTCCATCCTCTGCTTCGGTGGCAGCTGGA
droBia1 scf7180000302113:296354-296611 + GGTGGGT-GG-------C------------TGGAAAGT------TGCAGCCGGAAAATGCAAAAAAG-CC-------A-GG-----------------------AA------------AAGTTTTCTTTTCACTTTGTGCCC---------TGCAACGCA---------------------------------------GCAAG----TGCA--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCCCGGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTCGCCTCT------------------------------------CTAAGCTATTTGTCTTTC---------------------TG--------CTC-------TTT------CT-----CCCTGCAGATCCCAATAACAACGTGGCCCCGCCGAGTTCGCCTTCGACGGCAGCCGGA
droTak1 scf7180000415286:131799-132065 - AGTG---------------------------------G------TGCAGCCGGAAAATGCAAAAAAGGCC-------A-GG----------------------AAA------------AAGTTTTCTTTTCACTTTATGCTT---------TGCAGA--------CG-------CAAAAGCAAA--CGC---------GGCAAG----TGCA--------------A-----------------G-GGGATAATATTGTGGAATTGAAAAAGTAATCTCCCAGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTCCACTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------T--------TTTCCTCCTCTAC------CC-----CTTTGCAGATCCCAATAACAATGTGGCTCCACCCACCACGTATTCGGTGGCAGCCGGA
droEug1 scf7180000409166:15618-15848 + C--------------------------------------------------GGAAAATGCAAAAAAG-CC-------A-GA-----------------------CA------------AAGTTTTCTTTTCACTTTATGCCT---------TGCAACGCT---------------------------------------GCAAG----TGCA--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCCCGGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTTT----------------------C--------CTC-------CAC------CT-----TTTCGCAGATCCCAATAACAATGTTGCCCCACCAACCACCTATTCGGTGGCAGCCGGA
dm3 chr3R:27017507-27017738 - C--------------------------------------------------GGAAAATGCAAAAGAGGCC-------A-GG----------------------AAA------------AAGTTTTC-TTTCACTTTATGCCT---------TGCAACGCA---------------------------------------GCAAG----TGCC--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCGCCGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CAC--CTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------C--------CTC-------TCG------CT-----GTTTCCAGATCCCAATAACAATGTCGCCCCGCCGACCACATACTCCACGGCAGCCGGA
droSim2 3r:26320870-26321100 - dsi_29844 C--------------------------------------------------GGAAAATGCAAAGAGG-CC-------A-GG----------------------AAA------------AAGTTCTC-TTTCACTTTATGCCT---------TGCAACGCA---------------------------------------GCAAG----TGCC--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCGCCGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------C--------CTC-------TCG------CT-----GATTCCAGATCCCAATAACAATGTCGCTCCGCCGACCACATACTCCACGGCAGCCGGA
droSec2 scaffold_4:5835677-5835907 - C--------------------------------------------------GGAAAATGCAAAGAGG-CC-------A-GG----------------------AAA------------AAGTTCTC-TTTCACTTTATGCCT---------TGCAACGCA---------------------------------------GCAAG----TGCC--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCGCCGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------C--------CTC-------TCG------CT-----ATTTCCAGATCCCAATAACAATGTCGCCCCGCCGACCACATACTCCACGGCAGCCGGA
droYak3 3R:27953518-27953772 - TGGATGT-GG-------G------------TGCAAAGT------TGCAGCCGGAAAATGCAAAGAGG-CC-------A-GT----------------------GAA------------AAGTTTTC-TTTCACTTTATGCCT---------TGCAACGCA---------------------------------------GCAAG----TGCG--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCCTCGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGTT------------------CTC--CCCA------------------------------------CTAATCTATTTGTCTTCT----------------------C--------CGC-------TCG------CC-----TCTTCCAGATCCCAACAACAATGTCGCCCCACCAACCACATACTCCACGGCAGCCGGA
droEre2 scaffold_4820:964488-964736 + GGTG------------------------------AGCT------TGCAGCCGGAAAATGCAAAGAGG-CC-------A-GG-----------------------AA------------AAGTTTTCT-TTTACTTTATGCCT---------TGCAACGCA---------------------------------------GCAAG----TGCG--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCCTCGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------C--------TTC--TCGTCTCG------CT-----TGTTCCAGATCCCAACAACAATGTCGCCCCACCGACCACATACTCCACGGCAGCCGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AGGATAA-ACTAA-----------------------------------------------GGAAAAG-CC-------G-AAGGCAAATG--------------GCTAAGGCTACTGCAAA-------TTGCATTCGATGCAG---------TGCAGAGCA---------------------------------------GAGAC----TC-------------------------------------AATCTGTGGGATGGGATTGAAAATGTA-TCTCTAGGGGGGTGGG-GATAAGAAGCACAAATTAT-ATGTTATAC-------------------------------------------------------------------------------TATGTACTTACTTGTTTCATCACATAAATTGAT-C--------TCC-------ATT------TT-----CCCAATAGATCCCAACAACAATGTGGCCCCATCTGGAACAGCCTCCACAGCTGCTGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAACAGCCTCCACAGC.......1921.00201010
...............................................................................................................................................................A---------------------------------------GAGAC----TC-------------------------------------AATCTGTGGGAT............................................................................................................................................................................................................................................................................2011.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATGTGGCCCCATCTGGAAC...................2420.50101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGTGGCCCCATCTGG......................2020.50101000
......................................................................................................................................CGATGCAG---------TGCAGAGCA---------------------------------------GA......................................................................................................................................................................................................................................................................................................................................1920.50100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGAACAGCCTCCACAGC.......2120.50100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAATGTGGCCCCATCTGGAAC...................2720.50101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACAGCCTCCACAGCTGCTGGT2420.50100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCCATCTGGAACAGC................1820.50100100
droVir3
GG--------------------------------------------------CATGTGGCAAAGCAG-CC-------GTGGTGAAGATTGCAATGCAA-TT--GCA------------AAGTT----TTTAAGTTTATGTGC---------GGC-GCACTGCATGCACCCGGCCTAAATTGAAAAGTGCTGCAGGGCAGCTCTGTAAGT-----------------CCGGGTAGGAGGGGAGCCGATTACGGCTCTTGCGGAATTGAATACGTAATCTCCCAGGA-TTAGCTGGTGAAATGTAA-AATTATTATAATACCAGCTTCAGACT----TGACTTAAACACTTATG--CATA------------------------------------CATATATATACGTATACT----------------------T--------TTT-------TCCTCATCATG-----TGCTGTAGATCCCAACAATAATGTGGCGCCACCGGACACGCCCTCAACGGCTGCTGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATAATGTGGCGCCACCGGACACG..................2711.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................AAATTGAAAAGTGCTGCAGGGCAGCTCT....................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATAATGTGGCGCCAC..........................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................GCAG-CC-------GTGGTGAAGATTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGTGGCGCCACCGGACA....................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................GTGCTGCAGGGCAGCTCTGTAAGT-----------------CCGGGT.......................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACGCCCTCAACGGCTGCC...2211.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATAATGTGGCGCCACCG........................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATAATGTGGCGCCACC.........................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CT----------------------T--------TTT-------TCCTCATCATG-----TGCTGTAG..................................................2511.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACGCCCTCAACGGCTGCT...2211.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AGGCTGC-AGTTA------------------GACACGT-------------GGCAAGTGGCAAGTGG-CATGCGGCAG-GGCGTAGATTGCAATGCAA-GT--GCA------------AAGTT----ATTCAGTTTATGTGG---------CG-AGCGTTGCATGCGACGGGCCTAAATTGAAA--TGCT---------GCCGG----CTCCTCCTGCAGGCGCTT------------------GC------ATGGGCAGAAATTGAATACGTAATCTCCCAGGA-TTAGCTGCTGAAATGTGA-AATTATTATAATGGCTT---ACTGCAGACTTGACTGTAA------------TA------------------------------------CTAATATATCTATATGCA----------------------TTTCTTTGCTTA-------TTGTCATTATG-----CGCGGCAGATCCCAACAATAATGTGGCGCCACCGGACACGCCCTCGACGGCTGCCGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................G-GGCGTAGATTGCAATGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAATGTGGCGCCACCG........................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTCGACGGCTGCCGGC1911.001100000
droGri2
TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT------------------ATG--TACT------------------------------------CTAATATATATGTATTGT----------------------A--------TT--------TAA------TT-----TCTTGCAGATCCCAACAACAATGTGGCACCACCGGACACGCCTTCAACCGCTGCTGGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
GTATCAAA---AA---------------------------------------AGAAAAGCAAAGC-----------------GAAGATG--------------GCA------------AAGTTTTCCTTACAGTTTATGGAATGCACCTCCAGCAAAGTA--------------------------------------GTCGAGTAGAT-----------------A-------------------CGAGTAATACTGGGGAATTGAAAAAGTAATCTCCTGGGA-TTATG--------TGTGA-AATTGTAATGAGAGGCGGCGAGGGGT------------------TGC--TCTACGAAATTGGAGATATTTTGTGTTGGA-AATCGTTCTATATCTGATGCAT-----------------------------------------------TT------TC-----TCTTCCAGATCCCAACAATAACGTTGCCCCACCGAGTACGGCCTCAACGGCAGCCGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACGTTGCCCCACCGAGTACGGC................2614.0040400000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCACCGAGTACGGCCT..............2014.0040400000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGCCTCAACGGCAGCC...2012.0020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGCCTCAACGGCAGCCGGA2212.0020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACGTTGCCCCACCGAGTACGGCCT..............2812.0020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACGTTGCCCCACCGAGT.....................2112.0020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACGTTGCCCCACCGAGTAC...................2312.0020110000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTGCCCCACCGAGTACGGCC...............2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACGTTGCCCCACCGAGTACGG.................2511.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACGTTGCCCCACCGAG......................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGCCCCACCGAGTACGGC................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTGCCCCACCGAGT.....................1811.0010100000000
...........................................................................................................................................................................................................GTAGAT-----------------A-------------------CGAGTAATACTGGG...........................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCCTCAACGGCAGCCGGA2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCCCACCGAGTACGGCCTCAACGGC.......2911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCACCGAGTACGGCC...............1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTGCCCCACCGAGTAC...................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATAACGTTGCCCCACCGA.......................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACGTTGCCCCACCGAGT.....................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................AATGAGAGGCGGCGAGGG......................................................................................................................................................................................................1811.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTGCCCCACCGAGTACGGC................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAACGTTGCCCCACCGAGTACGGCCT..............2911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACGTTGCCCCACCGAGTACGGCC...............2711.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTGCCCCACCGAGTACG..................2111.0010000001000
droPer2
GTATCAAA---AA---------------------------------------AGAAAAGCAAAGC-----------------GAAGATG--------------GCA------------AAGTTTTCCTTACAGTTTATGGAATGCACCTCTAGCAAAGTA--------------------------------------GTCGAGTAGAT-----------------A-------------------CGAGTAATACTGGGGAATTGAAAAAGTAATCTCCTGGGA-TTATG--------TGTGA-AATTGTAATGAGAGGCGGCGAGGGGT------------------TGC--TCTACGAAATTGGAGATATTTTGTGTTGGA-AATCCTTCTATATCTGATGTAT-----------------------------------------------TT------TC-----TCTTCCAGATCCCAACAATAACGTTGCCCCACCGAGTACGGCCTCAACGGCAGCCGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACGTTGCCCCACCGAGTACGGC................2612.002011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACGTTGCCCCACCGA.......................1811.001010000
...........................................................................................................................................................................................................GTAGAT-----------------A-------------------CGAGTAATACT..............................................................................................................................................................................................................................................................................1811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAACGTTGCCCCACCGAGTACGGC................2711.001001000
................................................................................................................................................................................................................................................................................................................................................................................GATATTTTGTGTTGGA-AATC..........................................................................................................................................2011.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCCCACCGAGTACGGC................2011.001001000
.........................................................................................................A------------AAGTTTTCCTTACAGTTTATG....................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGCCTCAACGGCAGCCGGA2311.001010000
droAna3
ACGACAGGACTAAGGACCAAGGACCACGGCGGGCTAGGAGCAGGT---GCGGCAAAATGCAAAAGAG-CC-------A-GG-GAATGTGGCA---AACTTGGGGGA------------AAATTTTCTTTTCACTTTCTGCCCGGCACC---AGCCAGGCT---------------------------------------GCAAG----AGC-----------------------------------AGGATAATATTGTGGAATTGAAAAAGTAATCTCCAGGGA-TTAGG--------TGTGA-AATTATAATGATAGGCCG--AGAGTT------------------CTTAGTTCT-----------------CACCTTCGAAAGGCGCCCACTAAGCTATTTGTCTTCT----------------------C--------TTC-------CCATT-TT-TTTGCGTTATTACAGATCCCAACAATAATGTCGCCCCACCTGGATATCCTTCGACAGCTGCGGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTCGACAGCTGCGGGA2012.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCCTTCGACAGCTGCGG..2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGCCCCACCTGGATATCCTTCGAC..........2811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCCTTCGACAGCTGCGGGA2311.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATGTCGCCCCACCTGGATATC.................2511.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................TTCGAAAGGCGCCCACTAAGC...............................................................................................................................2111.001010000
.......................................................................................................................................................................................................GCAAG----AGC-----------------------------------AGGATAATATT..............................................................................................................................................................................................................................................................................1911.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGCCCCACCTGGATATCCTTCGACA.........2911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCTTCGACAGCTGCGGGA2111.001100000
................................................................................................................................................CACC---AGCCAGGCT---------------------------------------GCAAG----AGC-----------------------------------.........................................................................................................................................................................................................................................................................................2111.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATCCTTCGACAGCTGCGGG.2311.001100000
droBip1
GGGGC-----------------------------AAGGTGCAGGT---GCGGAAAAATGCAAAAGAG-CC-------A-GG-GAATGTGGCA---AACTTGGGGGA------------AAATTTTCTTTTCACTTTCTGCCCGGCACCGGCAGCCTGGCT---------------------------------------GCAAG----TGCA-----------------------------------GGATAATATTGTGGAATTGAAAAAGTAATCTCCAGGGA-TTAGG--------TGTGA-AATTATAATGATAGGCCG--AGAGTT------------------CTCGGTTCT-----------------CACCTCCGAAAGCCGCCCACTAAGCTATTTGTCTTCT----------------------C--------TTC-------CAT-A-TT-TTTTCGTTATTACAGATCCCAACAATAATGTCGCCCCACCTGGATCGCCTTCGACAGCTGCGGGGSizeHit CountTotal NormTotal
No Reads
droKik1
TGC------------------------------------------------AGAAAATGCAAAAGAG-CCTCCG---A-CG--AAGC-----------TTT--GCA------------AAGTTTTCTTTTCACTTTATGCCT---------CCGCCTTTA---------------------------------------GCCAG----TGCT--------------G-----------------GCTGGATAATATTGTGGAATTGAAAAAGTAATCTTCCGGGA-TTAGG--------TGTAA-AATTATAATGATAGGCC---AGAGTT------------------CTC--CTTA------------------------------------CTAAGCTATTTGTCTTCG-------------------GCTC--------CTC-------TTT------C------CTCCGTAGATCCCAATAACAATGTTGCTCCGCCCTCAACTCCTTCGACGGCTGCCGGASizeHit CountTotal NormTotal
No Reads
droFic1
C--------------------------------------------------GGAAAATGCAAAAAAG-CC-------G-GC-----------------------AA------------AAGTTTTCTTTTCACTTCGTGCCT---------TGCGAGGCA---------------------------------------GCCAG----TGCC--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCCCGGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CCCA------------------------------------CTAAGCTATTTGTCTTCC--------------------------------T--------TCG------CC-----CTTCGCAGATCCCGACAACAATGTGGCCCCGCCTTCCACGCCCTCCACTGCGTTGGGGSizeHit CountTotal NormTotal
No Reads
droEle1
T--------------------------------------------------GGAAAATGCAAAAAAG-GC-------A-GG----------------------AGA------------AACTTTTCTTTTCACTTTATGCCTGGC------TACGACGCA---------------------------------------GCAAA----TGCA--------------A-------------------AGGATAATATTGTGGAATTGAAAAAGTAATCTACCTGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------C--------CTC-------TAC-C-TTTTT-----TGATGCAGATCCCAATAACAATGTGGCCCCTCCAACCACGTATTCGGTGGCAGCTGGASizeHit CountTotal NormTotal
No Reads
droRho1
GC------------------------------------------------CGGAAAATGCAAAAAAG-CC-------T-GG-----------------------CA------------AAGTTTTCTTTTCACTTTATGCCT---------GGCGACGCA---------------------------------------GCAAG----TGCA--------------A-------------------AGGATAATATTGTGGAATTGAAAAAGTAATCTACCTGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCA------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTTT----------------------C--------TGC----GTCTTC------CC-----CCCTGCAGATCCCAATAACAATGTGGCCCCTCCATCCTCTGCTTCGGTGGCAGCTGGASizeHit CountTotal NormTotal
No Reads
droBia1
GGTGGGT-GG-------C------------TGGAAAGT------TGCAGCCGGAAAATGCAAAAAAG-CC-------A-GG-----------------------AA------------AAGTTTTCTTTTCACTTTGTGCCC---------TGCAACGCA---------------------------------------GCAAG----TGCA--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCCCGGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTCGCCTCT------------------------------------CTAAGCTATTTGTCTTTC---------------------TG--------CTC-------TTT------CT-----CCCTGCAGATCCCAATAACAACGTGGCCCCGCCGAGTTCGCCTTCGACGGCAGCCGGASizeHit CountTotal NormTotal
No Reads
droTak1
AGTG---------------------------------G------TGCAGCCGGAAAATGCAAAAAAGGCC-------A-GG----------------------AAA------------AAGTTTTCTTTTCACTTTATGCTT---------TGCAGA--------CG-------CAAAAGCAAA--CGC---------GGCAAG----TGCA--------------A-----------------G-GGGATAATATTGTGGAATTGAAAAAGTAATCTCCCAGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTCCACTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------T--------TTTCCTCCTCTAC------CC-----CTTTGCAGATCCCAATAACAATGTGGCTCCACCCACCACGTATTCGGTGGCAGCCGGASizeHit CountTotal NormTotal
No Reads
droEug1
C--------------------------------------------------GGAAAATGCAAAAAAG-CC-------A-GA-----------------------CA------------AAGTTTTCTTTTCACTTTATGCCT---------TGCAACGCT---------------------------------------GCAAG----TGCA--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCCCGGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTTT----------------------C--------CTC-------CAC------CT-----TTTCGCAGATCCCAATAACAATGTTGCCCCACCAACCACCTATTCGGTGGCAGCCGGASizeHit CountTotal NormTotal
No Reads
dm3
C--------------------------------------------------GGAAAATGCAAAAGAGGCC-------A-GG----------------------AAA------------AAGTTTTC-TTTCACTTTATGCCT---------TGCAACGCA---------------------------------------GCAAG----TGCC--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCGCCGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CAC--CTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------C--------CTC-------TCG------CT-----GTTTCCAGATCCCAATAACAATGTCGCCCCGCCGACCACATACTCCACGGCAGCCGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTCCACGGCAGCCGGA2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCCACGGCAGCCGGA1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCCCGCCGACCACATACTC.............2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACATACTCCACGGCAGC....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACATACTCCACGGCAGCCGGA2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGACCACATACTCCAC..........1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGCCGACCACATACTCCACGGC.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TGCAACGCA---------------------------------------GCAAG----TGCC--------------A-------------------GGG......................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACATACTCCACGGC.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCCACGGCAGCCGGA1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATACTCCACGGCAGCCGGA2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGCCCCGCCGACCAC...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACAATGTCGCCCCGCC.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGCCCCGCCGACCACA..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AAAAAGTAATCTCGCCGGA-TTAGG--------TGT.................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AAG----TGCC--------------A-------------------GGGATAATATTGTGGA.........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AATTATAATGATAGGCC---AGAG......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AAG----TGCC--------------A-------------------GGGATAATATT..............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................CAACGCA---------------------------------------GCAAG----TGCC--------------A-------------------GGG......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCACATACTCCACGA........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................GTGGAATTGAAAAAGTAATTA.........................................................................................................................................................................................................................................................2130.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................AAAAGAGGCC-------A-GG----------------------AAA------------AC.......................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................A-TTAGG--------TGTGA-AATTAAG.......................................................................................................................................................................................................................18150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
C--------------------------------------------------GGAAAATGCAAAGAGG-CC-------A-GG----------------------AAA------------AAGTTCTC-TTTCACTTTATGCCT---------TGCAACGCA---------------------------------------GCAAG----TGCC--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCGCCGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------C--------CTC-------TCG------CT-----GATTCCAGATCCCAATAACAATGTCGCTCCGCCGACCACATACTCCACGGCAGCCGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGACCACATACTCCACGGCAGCC...2712.00200020000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAATGTCGCTCCGCCGA.......................2111.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCACATACTCCACGGCAGCCGGA2611.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACATACTCCACGGCAGCCGGA2511.00100000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACAATGTCGCTCCGCCGA.......................2211.00100000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAATGTCGCTCCGC..........................1811.00100010000000000000
................................................................................................................................................................................................................................................................TGTGGAATTGAAAAAG...............................................................................................................................................................................................................................................................1650.40200000000002000000
................................................................................................................................................................................................................................................................TGTGGAATTGAAAAA................................................................................................................................................................................................................................................................1550.20100000000001000000
droSec2
C--------------------------------------------------GGAAAATGCAAAGAGG-CC-------A-GG----------------------AAA------------AAGTTCTC-TTTCACTTTATGCCT---------TGCAACGCA---------------------------------------GCAAG----TGCC--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCGCCGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------C--------CTC-------TCG------CT-----ATTTCCAGATCCCAATAACAATGTCGCCCCGCCGACCACATACTCCACGGCAGCCGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCCACGGCAGCCGGA1913.0030030
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCACATACTCCACGGCAGCCGGA2611.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACTCCACGGCAGCCGGA2111.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATGTCGCCCCGCCGA.......................1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCACATACTCCACGG........1811.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACATACTCCACGGCAGCCGGA2411.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAATGTCGCCCCGCCGA.......................2111.0010010
.................................................................................................................................................................................................................................................................................AATCTCGCCGGA-TTAGG--------T...................................................................................................................................................................................................................................1811.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTCCACGGCAGCCGGA2011.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACATACTCCACGGCAGCCGGA2311.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACATACTCCACGGCAGCCGGA2511.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAATGTCGCCCCGCCGA.......................2011.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATACTCCACGGCAGCCGG.2111.0010100
droYak3
TGGATGT-GG-------G------------TGCAAAGT------TGCAGCCGGAAAATGCAAAGAGG-CC-------A-GT----------------------GAA------------AAGTTTTC-TTTCACTTTATGCCT---------TGCAACGCA---------------------------------------GCAAG----TGCG--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCCTCGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGTT------------------CTC--CCCA------------------------------------CTAATCTATTTGTCTTCT----------------------C--------CGC-------TCG------CC-----TCTTCCAGATCCCAACAACAATGTCGCCCCACCAACCACATACTCCACGGCAGCCGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCCACGGCAGCCGGA1912.00200100010000
............................................................................................................................................................................................................................................................ATATTGTGGAATTGAAAAAGT..............................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATGTCGCCCCACCAAC......................2111.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCCCACCAACCACATACT..............2211.00101000000000
.......................................................................................................................................................................................................GCAAG----TGCG--------------A-------------------GGGATAATATTGTGGAA........................................................................................................................................................................................................................................................................2711.00100000010000
droEre2
GGTG------------------------------AGCT------TGCAGCCGGAAAATGCAAAGAGG-CC-------A-GG-----------------------AA------------AAGTTTTCT-TTTACTTTATGCCT---------TGCAACGCA---------------------------------------GCAAG----TGCG--------------A-------------------GGGATAATATTGTGGAATTGAAAAAGTAATCTCCTCGGA-TTAGG--------TGTGA-AATTATAATGATAGGCC---AGAGCT------------------CTC--CTCT------------------------------------CTAAGCTATTTGTCTTCT----------------------C--------TTC--TCGTCTCG------CT-----TGTTCCAGATCCCAACAACAATGTCGCCCCACCGACCACATACTCCACGGCAGCCGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCACATACTCCACGGCAGC....2211.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTCCACGGCAGCCGGA2011.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCCACGGCAGCCGGA1911.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAATGTCGCCCCACCGAC......................2211.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCACATACTCCACGGCAGCCG..2311.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCCACGGCAGCCGA.1830.3311000000

Generated: 05/18/2015 at 05:43 AM