ID:

dwi_2940

 Coordinate:

scf2_1100000004921:357268-357528 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.9 -7.8 -7.7 -7.2

Flybase annnotation

exon [dwil_GLEANR_5789:3]; CDS [Dwil\GK22574-cds]; intron [Dwil\GK22574-in]; CDS [Dwil\GK22574-cds]; exon [dwil_GLEANR_5789:2]; intron [Dwil\GK22574-in]

No Repeatable elements found

mature
star
  1. scf2_1100000004511:6348578-6348599 +
  2. scf2_1100000004590:4288382-4288403 -
  3. scf2_1100000004909:4425719-4425740 -
  4. dwi_2940  scf2_1100000004921:357451-357472 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#########-----------------------------------------
AAAGCGACAGCGGACCCCATCCACCGCCAATCGTGGCCAATAATCCAAAGGTAAGCAAAACGGATCAAGTTGTGTCAAGTTGTCATCGCCCATCTTTATGGCATTCGTATTCGTATGTGTGTGTGTGTTCATTCCATATTCTCTCTATGTAACTAATTGTATGATAATTGTTGCTTTATTTTCAAATGCCTACAACAACAACAACTACAATTAATGCGCCGCTTCTCTTCTTACCTGCATTCCATAAAACCACCAAAAAAACATTTTTCATCTCAACACATCTTCTCATCGCATAACAATTTCAACTCTAGAGCAACAAGGTAAATGACATAATAGCTGCTTATCATCATTTTCTATAATA
**********************************************************************************************************((..(((((((((((.(((....)))..)))))...................))))))........))******************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V119
head
.........................................................................................................................................................TAATTGTATGATAATTGTTGC........................................................................................................................................................................................... 21 0 1 1.00 1 1 0
....................CCACCGCCAATCGTGGCCAATAATC............................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0
...........................................TCCAAAGGTAAGCAAAACGG.......................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0
..........................................................................................................GTATTCGTATGTGTGTGTGTGT......................................................................................................................................................................................................................................... 22 0 4 0.25 1 0 1
...........................................................................................................TATTCGTATGTGTGTGTGTGT......................................................................................................................................................................................................................................... 21 0 6 0.17 1 1 0

Anti-sense strand reads

TTTCGCTGTCGCCTGGGGTAGGTGGCGGTTAGCACCGGTTATTAGGTTTCCATTCGTTTTGCCTAGTTCAACACAGTTCAACAGTAGCGGGTAGAAATACCGTAAGCATAAGCATACACACACACACAAGTAAGGTATAAGAGAGATACATTGATTAACATACTATTAACAACGAAATAAAAGTTTACGGATGTTGTTGTTGTTGATGTTAATTACGCGGCGAAGAGAAGAATGGACGTAAGGTATTTTGGTGGTTTTTTTGTAAAAAGTAGAGTTGTGTAGAAGAGTAGCGTATTGTTAAAGTTGAGATCTCGTTGTTCCATTTACTGTATTATCGACGAATAGTAGTAAAAGATATTAT
*******************************************************************************************************************************************************************************************((..(((((((((((.(((....)))..)))))...................))))))........))********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V119
head
 V117
male body		 V118
embryo
 M020
head
 M045
female body
...............GGATAGGTGGCGGTTAGCACC..................................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
...............GGGTAGGTGGCGGTTAGCA....................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
...........................................................TGCCTAGTTCAACACAGTTC.......................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0
..........CCTTTGGGTAGGTGGCGGTTAGC........................................................................................................................................................................................................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................................................................................................TGTGTAGAAGAGTAGCGTATT................................................................. 21 0 1 1.00 1 0 0 1 0 0
....................TGTGGCGGTTAGCACCGGTTA................................................................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0
.........CGTCTGGGCTAGGTGGCGGCT........................................................................................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................................................................................TGTGTAGGAGGGTAGCGTATT................................................................. 21 2 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................................GAGAAGAAAGGACCTAAGGT..................................................................................................................... 20 2 2 0.50 1 0 0 1 0 0
..............................................................................................................................................................................................................................................................TTTTTTTGTAAAAAGAAG......................................................................................... 18 1 18 0.22 4 0 0 4 0 0
.............................................................................................................................................................................................................................................GTATGGTATTTGGGTGGTGTTT...................................................................................................... 22 3 5 0.20 1 0 1 0 0 0
..............................................................................CAACAGAAGCGGGTCGAACTA...................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 1
...................AGGTTGCGGGTAGCACGGG................................................................................................................................................................................................................................................................................................................................... 19 3 18 0.11 2 0 1 0 0 1
..TCGCGGTCGCGTGGTGTAG.................................................................................................................................................................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 1
.......GTCGACTGGGGTAGGAGGCT.............................................................................................................................................................................................................................................................................................................................................. 20 3 13 0.08 1 0 0 0 0 1
................................................................................................................................................................................................................................................................................................................................CATCTACTGCAATATCGACG..................... 20 3 15 0.07 1 0 0 1 0 0
..................................................................................................ATCGTAAGCATAAGCATTTA................................................................................................................................................................................................................................................... 20 3 16 0.06 1 0 1 0 0 0
............................TTCGCACCAGTTATTAGGC.......................................................................................................................................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 1
................................................................................................................................................................................................................................GGGAGGAATGGCCGTAAGG...................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
.................................................................................................TATCGTAAGCATAAGCATTT.................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
..................................................................................................ATCGTAAGCATAAGCATT..................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004921:357218-357578 - dwi_2940 AAAGCGACAGCGGACCCCATCCACCGCCAATCGTGGCCAATAATCCAAAGGTAAG-----CAAAACGGATCAAG------T--TGTGTCA-------AGTTGTCATCGC--------------CCATCTTTATGGC----------------ATTCGTATTCG--TATGTGTGTGTGTGTTCATTC----------------------------------------------------------------------------CATATTCTCTCTAT--------------GTA--------------AC------------------------------------------------------TAATT--------------------------------------------------------------------------------------------------------------------------------GTATGA-------------------TAATTGTTGCTTTATTTTCA-AATGC-------------C-----TA-C------------------------------AACAACAA---C-------------------AACTACAATTAATGCGCCGCTTC--TC---------------TTCTTACCTGCA-----TTCCATA------------AAA--CCAC-CAAAAAAA---CA-------------TTTTTCATCTCAAC--ACATC-TTCTCATC------GCATAACA-ATTTCAACTCTAGAGCAACAAGGTAAAT-GACATAA---TAG---------CTGCTTATC-------------------A-T-CAT-T-TTC---TATAAT---A
droVir3 scaffold_13047:7917277-7917697 + dvi_15951 CCGGCGAGCCGGGCCACCACCCACCGCCCATTGTGGCCAACAATCCAAAGGTAAG-----CAAGGTG----------------TTT--------TATCCCTGCCCC--ATGGCCATCGATTGGTGTGCAGCGTGTTTGTCCA-----TATAT------------------------------------------------------------------------------------------------------------------------------------------GTC--------------TA------------------------------------------------------TATT--TATATATAATGTGTTTATATGTAGA----------------------------------GCTATATGTTTT-----------------------GCTTTAATAGTG-------------------------TATAATAACATGTTAAACATTACTCTGTTGCTTTTC-TCTCTCTCTCTCTCTTTGTCTGTCTCGATCTTCA-AT--TGCAACAACAATTGA-TTGCGCGCATCAACAT---T------------AAATACCACCAACGA---T--TGCTGCTTAATG--------------------TATTTGTAACTGCTATCACC---------ATAAA---ACA---TGT------ACA----------------CCCACAA-------CACA-CACACATC-----------------TACATCTGCAGAGCTCCAAGGTAAT---GC-------AGTACTTAGTAATTGCT-GTC-------------------AGTGTACCT-TGTGA----------C
droMoj3 scaffold_6540:28272950-28273384 - dmo_2094 CCGGCGAGCCAGGCCACCACCCACCGCCCATTGTGGCCAATAATCCAAAGGTAAG-----CAAGGTG----------------TGTGTC-------TCGTAGCCA----AGGCCTTCGATTGATGTGTAGCGCGTTTGTCCATCTTTGAATAGTTTA--TCTGTGTGTGTGTGTGTGTATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGA---GC------------TAATCGTATTT--AT-------ATGTATT-----------------------GCACAAACTGTGTTAATATCCAAGTATAA-CTTGATTTA-------------------ACTTTGTTGCTTTTTCTCTCTCTCTC------TATCTGTC-----TC-CA-AT--TTCAACAACAATTGATC-GCGC--A-CATCAACATAATAAATAAATATATATACCAACACCGACT-----GCTGCTTTATG--------------------TATATGTAACTGCTATCATC------------TTACAACA---CACAAAC--ACA----------------CTCATACACAC--TCGCC-CACATACT------------------T-TGCTGCAGAGCTCAAAGGTAAT---GC-------AGTAATTAGCACTCGCTCACA-------------------T------------------------A
droGri2 scaffold_15081:1286297-1286443 + CATTCGCA---TGT------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTGTGTGTAC----------------------------------------------------------------------------TATA-------AAT--------------GTA--------------TG------------------------------------------------------TAATTGTATATTGTACG------TATGTA-----------------------------GATGTATAT-----GC------------ATAT----------GCGA------------------------A-ATTGGCTTA-------------------AAGTGGCAGC-----------------------------------TA-C------------------------------AACAACAA---T-------------------AACAACAATTTCTGC-CTGCGTC--TC---------------TCCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 2:9719601-9720045 - CGAGCGAG---GGCTCCCATCCGCCGCCGATAGTGGCCAACAATCCAAAGGTAAG-----CAAGGTG----------------TGT--------GATCGTTGCCTC--CCCACCTTCGAT-GTTGATCCGTGCGTCCATTC----CAGACATATTCG--TTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTGTACTG------TATGTT-----------------------------AATTAATGTTGTGTGTG--TCATTTGCTGTACTCTGGGG-AG-----------------------AGATTT-CAACACTAA---------------GA--TCTCTCTTGCTTTATCTTCCCTATGT-------------C-----C------TCAAACAACAACAATGCGAC----------ATCGA---C----------------ACTGCCATCGA---CTGTGCTGCTTTTCT--------------------TACCTGCTGCCCCCACCATCATCATCATCATGAACGCACCCCCCACTACA--TGCCACGCCCCACACATCTTTCGTATCTAT--CTATA-CCCACATT------CG--CACATGCCTCAACTGCAGAGCACCAAGGTAAT---GCCTAATGCCTT---------TTGTCTGCCAGTGAGAGTCTCCCCCACAGA-----------------------A
droPer2 scaffold_0:10760883-10761035 + CGAGCGAG---GGCTCCCATCCGCCGCCGATAGTGGCCAACAATCCAAAGGTAAG-----CAAGGTG----------------TGT--------GATCGTTGCCTC--CCCACCTTCGAT-GTTGATCCGTGCGTCCATTC----CAGACATATTCG--TTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTGTACTG------TATGTT-----------------------------AATTAATGTTGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:19611415-19611808 - ------AA---GGCACCCACCCGCCGCCCATTGTGGCCAACAATCCAAAGGTGGGGCTC---------------------------------------ATTCCAAC--AACTCATTCAACTGTTG--------------------------------------------------------------------------------------------------CCATGAATGTT--------------------------------AACTTT-AGTT---CA---TCAAAGTCA---------T-----------------------------------------------------------------------------------------------ATATATA-----TTATCATATTT--TTAAG-----TGT---CTAA---CTTTGT-TC--AA--------------------------AAACAT-TTTGACTAA-------------------GACATGTTGCTTTATCTTCCTTATGC-------------C-----AA-CC-----AACAACAACAATGTTACTGCGC--TTCATCAT---C-------------------GACATTGACTAATGCGGTGCTTACTCCACATTCGAACCGCCCCACACACCCACA-------------CCA--ACCATAAAAACTCAC-CCAAAAAA--CAC----------------CACA-----------TCA-CACACATCAAAACTCG--CACATGCCTCGACTGCAGAACAACAAGGTAAT---GC-------CAT---------CTGTCCACC-------------------TGGGAT--T-TGTGAGG---AT---T
droBip1 scf7180000396413:2774381-2774720 + ------AA---GGCTCGCATCCTCCGCCCATTGTGGCCAATAATCCAAAGGTGCG-----GA--TCATAAAAAT------TTG---TTGGAAA-AA------TCATACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------TTTATGT---ATTTCAT--------------------------------------------------AA------------------------------------------------TT--TGACT-----TGT---CTAA---CTTTATTCG--AA---------------------------ATCAT-TTTGACTAA-------------------GATCTGTTGCTTTATCTTCCTTATGC-------------C-----CA-CC-----AACAACAACAATGTTACTGCGC--TTCATCAT---C-------------------AACATTGACTAATGCGGTGCTTTCTCGACATCCAAACCGTCCCAAAAA--CACT-------------CGA--ACCAT-------------AAAAAC--TCA----------------CCCACAT-------CTCA-CACACATTTAAACTCG--CACATGCCTCGACTGCAGAA---CAAGGTAAT---GC-------CAT---------CTTTCCATC-------------------TGAG----------A-----------
droKik1 scf7180000302705:134561-134719 + CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAA---C-------------------AACATCGACTAATGCGCTGCC--TTAC------------------ACATTTCCA-----TTTCATA------------AA-ACATAT-TCACTCAC--TTA----------------CTCACTGCCAT--ATA-----CACATC------CACATGCACACCTCGACTGCAGAACACTAAGGTAATAAAGC-------CAG---------CTGCTCCGA-------------------G-A-AAA-T-CCA---GGGAAT---A
droFic1 scf7180000453826:635072-635509 - CCAGCGAT---GGATCCCACCCACCGCCCATCGTGGCTAACAATCCAAAGGTAAA-----AGCACGTGAACCTCAAAAAGT---GCACCA------------------A--------------AAATGCAT--------CT--------TGT----------------ACCCATTTTTAC------ATCTGGACCATTTCTTATTCGGATTTCGTTTTCACAAAAT--ATCATAAACAATTTAAATAAAATGACCTCGATTCCAAATACTTT-AGT--------------------------------------------------------------------------------------------------------------------------------------TT--------TA--TTAAGTTATG--TT--ACT---------ATCC--AT--------------------------AGACAT-TTGAACTAC-------------------AGTTTCTTGCTTTATCTTCCTTATGC-------------T-----CAACATCTCGAACCACAACAATGCAACTGCGC--AACACCAA---C-------------------AATATCGACTAATGCGCCGCT--TAAC--------------------------A-----CTTCATT------------CCAATCCAT-TGTAAACC--CCA----------------CTCATTTTCAT--CCTCC-CACAAACG------CAAACGCACACATCGACAGCAGAGC---AAGGTAAA---GC-------CAT---------CTGTCCGCC-------------------ATTAAAATT-TCCGA-----------
droEle1 scf7180000491261:1550179-1550362 + CCAGCGAC---GGCTCCCACCCACCGCCCATCGTGGCCAACAATCCAAAGGTAAAATAC-AGCCCATGATCCTT------TTG---GTGGATAAAT------TCATCCC--------------GCATTCTTGTGCC----------------ATTTGTA--------TGTA---------------ATAGGTATCAT------------------------------------TAT--------------------------CAACTTTTTATCGT--------------TTC--------------AC------------------------------------------------------TAATT---------------------------------------------------------------------ATT-----------------------TTACAAATTCA--------------------------------------------------------CTTTTTATACA-AGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---T
droRho1 scf7180000780007:66322-66451 - CCAGCGAT---GGATCCCACCCACCGCCCATCGTGGCCAATAATCCAAAGGTAAG-----AGCCTATAAACCTC------TTC---GTTGATATGT------TCATCCC--------------GAATCCGTATGCC----------------ATATGTA--------TGTG---------------ATTGGGATCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------G----------------TTTATTC--------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302075:1870519-1870648 - C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAA---C-------------------AACATCGACTAATGCGCCGCT---CAC--------------------------A-----CATCATC------------GAAATCCAT-TAAAACAAATTCA----------------CTCATCTCCAT--CCGCC-CTCACATC------CAAACGCA--------CTGCAGAGCACCAAGGTAAA---GC-------CAT---------CTGTCCGCA-------------------GAA-----------------------
droTak1 scf7180000415700:453960-454351 + CCAGCGAT---GGCTCCCACCCACCGCCCATCGTGGCCAACAATCCAAAGGTATC-----AGCTTGGGAACCTT--------C---A--TATATGATCATTCCATT--TC------------------CATT------------------------------------------------------------------------------------------AACT--ACCATT--------------------------------TGTA----------CA----------AA---------TTTTTGGAGT-------AAATAACTTGAAATAATATTGTAGATCCTATTTGTAACGCCCC------C---------A----TATA---------------TTTATATGT--------TA--TTATTTTGTATGTA--ACCA---CTTCATTCC--AA--------------------------AGACAT-TCCGACTAA-------------------GATATCTTGCTTTATCTTCCTTATGC-------------T-----CAACAAAACGAACCACAACAATGCTAC--------------------------------------------------TGCGCT-----------------------------------A-----CATCATC------------GAAATCCAT-------------A----------------TTCATTCCCATATCCGCTACCCACATT------CAAACGCA--------CTGCAGAGCACCAAGGTAAAG-AGC-------CAT---------CTGTCTGCA-------------------GAGGAATACC-TA--GA---ATTATA
droEug1 scf7180000409770:549787-550213 + CCAGCGAT---GGATCCCACCCACCGCCCATCGTGGCCAATAATCCAAAGGTAACGCCCGCTAAGTC----------------TTT--------TATTCTTTCTTT--TTCCCATTTC----------TTTT------------------------------------------------------------------------------------------TTCAAGACCATT--------------------------------AGTTTC-AGTT---CACAATTAAAGTAATAACCCTCATT--TA-----------TTTTAATTTGA---------------------------------------------AATATATTTATA---------------CATTTATGT--------TA--TTAAGTTGTATATA--ACCA---CTTCATCCC--AA--------------------------TGACAT-TCCGACTAA-------------------GATCTCTTGCTTTATCTTCCTTATGC-------------T-----CAACAACTCGATCCACAACAATGCTAC-GCGC--CTCACCAA---C-------------------AACATCGAATAATGCGCTGCTG---AC--------------------------C-----CATCAAC------------AATATTCAT----AAAAA--CCG----------------CTCATTCCCAT--CCGCC-CTCATACCC-----CAAACGCACATATTGACCGCAGAGT---AAGGTAAA---GC-------CAT---------CTGTCTGCA-------------------GAGGAAATTC-CA--TA---ATCA-G
dm3 chr3R:23080404-23080768 + CCGGCGAT---GGCTCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGGTAAG-----CGAAACGGAGCCCT------TGG---GTGGATATTC------TCATCGC--------------GAATCCTTGTGTCTGTCTA------A--------------------------------------------------------------------------------------------------------------------------------CTT---------------------------------A--------------------------------------------------------ACGTA-----------------GAAGTCCATACAAA---------------------------TTGTG--ATAT---CTTCATCCC--AAAAA------------------------AAATT-TCCAACTAA-------------------GATATCTTGCTTTATCTTTCTTATGC-------------T-----CCACCACTTGAACCACTACAATGCAAC-GCGC--CTCACCAA---C-------------------AACATCGACTAATGCGCTGCTCTTTGC--------------------------A-----CATCATC------------AAAATCCAT-TCAAAAAC--CCA----------------TTCATTTCCAT--GCGCC-CTTACATC------CAACCGCACGTTTCGAATGCAGAGCCACAAGGTAAA---GC-------CAT---------CTGTCTGCG-------------------GGA-----------------------
droSim2 3r:22522108-22522469 + CCGGCGAT---GGCTCCCATCCGCCGCCCATCGTGGCCAACAATCCAAAGGTAAG-----CGAAACGGAGCCCTAGGGTTA---GGGTCG------------------A--------------GAATCCTTGTGTCTGCCTA------A--------------------------------------------------------------------------------------------------------------------------------CAT---------------------------------AGTCCTT--------------------------------------------------AAGTG-----------------G--GTCCTTACAAT---------------------------GTGTG--ATAT---CTTCATCCC--AA--------------------------TGACATTTCCAACTAA-------------------GATATCTTGCTTTATCTTCCGTATGC-------------T-----CCACCACTTGAACCACTACAATGCAAC-GCGC--CTCACCAA---C-------------------AACATCGACTAATGCGCTGCTATTTGC--------------------------A-----CATCATC------------AAAATCCAT-TCAAAAAA--CCA----------------TTCATATTCAT--GCGCC-CTCACATC------CAAACGCAAGTTTCGAATGCAGAGCCACAAGGTAAA---GC-------CAT---------CTGTCTGCG-------------------GGA-----------------------
droSec2 scaffold_13:1834645-1835021 + CCGGCGAT---GGCTCCCATCCGCCGCCCATCGTGGCCAACAATCCAAAGGTAAG-----CGAAACGGAGCCCTAGGGTTA---GGGTCG------------------A--------------GAATCCTTGTGTCTGTCTA------A--------------------------------------------------------------------------------------------------------------------------------CAT---------------------------------AGTCCTT--------------------------------------------------AAGTG-----------------G--GTCCTTACAAT---------------------------GTGTG--ATAT---CTTCATCCC--AA--------------------------TGACATTTCCAACTAA-------------------GATATCTTGCTTTATCTTCCGTATGC-------------T-----CAACCACTTAAACCACTACAATGCAAC-GCGC--CTCACCAA---C-------------------AACATCGACTAATGCGCTGCTATTTGC--------------------------A-----CATCATC------------AAAATCCAT-TCAAAAAA--CCA----------------TTCATATTCAT--GCGCC-CTCACATC------CAAACGCAAGTTTCGAATGCAGAGCCACAAGGTAAA---GC-------CAT---------CTGTCTGCG-------------------GGAGAATTTC-CA--GA---ATC--A
droYak3 3R:23413057-23413433 - CCAGCGAC---GGCTCCCACCCGCCGCCCATCGTGGCCAACAATCCAAAGGTAAA-----CGAACTGGAACCCA------CAG---TCGGATATGT------TCATCTT--------------AAATTCTTGTGTCTGTCTA------G------------------------------------------------------------------------------------------------------------------------------CACAT---------------------------------AG-----------------------------------------------------------A-------------------AGTCCTTACCATCTATAT--------TT--TTAAGCTATGTGTT--ACCA---CTTCACCCC--AA--------------------------AAACAT-TCCAACTAA-------------------GATATCTTGCTTTATCTTCCTTATGC-------------T-----CCACCACTTGAACCACAACAATGCAAC-GCGC--CTCACCAA---C-------------------AACATCGACTAATGCGCTGCC--TTAC--------------------------A-----CATCATC------------GAACTCCAT-TCAAAAAC--CCA----------------TTCATTTCCAT--GCGCC-CTCACATC------CAAACGCACATTTCGACTGCAGAGCAACAAGGTAAA---GC-------CAT---------CTGTCTGCA-------------------GGAG----------G-----------
droEre2 scaffold_4820:4953544-4953906 - CCGGCGAT---GGCTCCCACCCGCCGCCCATCGTGGCCAACAATCCAAAGGTAAA-----CGAACTGGAAGCCT------CGG---GTGGACATGT------TCATCTC--------------AAATCCCTGTGTCTATCTA------G--------------------------------------------------------------------------------------------------------------------------------CAT---------------------------------A-----------------------------------------------------------TA-------------------AGTCCCTACAATGTATAG--------TT--TTAAGCTATGTGTT--ACCA---CTTCACCCC--AA--------------------------AGACAT-GCGATCTAA-------------------GAAATCTTGCTTTATCTTTCTTATG------------------------------ATCCACTACAATGCAAC-GCGC--CTCACCAC---C-------------------AACATCGACTAATGCGCTGCC--TTAC--------------------------A-----CATCATC------------AAACTCCAT-TCAAAAAC--CCA----------------TTCATTTCCAT--GCGCC-CTCACATT------CAAACGCACATTTCGACTGCAGAGCAACAAGGTAAA---GC-------CAT---------CTGTCTGCA-------------------GGAG----------G-----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAAGCGACAGCGGACCCCATCCACCGCCAATCGTGGCCAATAATCCAAAGGTAAG-----CAAAACGGATCAAG------T--TGTGTCA-------AGTTGTCATCGC--------------CCATCTTTATGGC----------------ATTCGTATTCG--TATGTGTGTGTGTGTTCATTC----------------------------------------------------------------------------CATATTCTCTCTAT--------------GTA--------------AC------------------------------------------------------TAATT--------------------------------------------------------------------------------------------------------------------------------GTATGA-------------------TAATTGTTGCTTTATTTTCA-AATGC-------------C-----TA-C------------------------------AACAACAA---C-------------------AACTACAATTAATGCGCCGCTTC--TC---------------TTCTTACCTGCA-----TTCCATA------------AAA--CCAC-CAAAAAAA---CA-------------TTTTTCATCTCAAC--ACATC-TTCTCATC------GCATAACA-ATTTCAACTCTAGAGCAACAAGGTAAAT-GACATAA---TAG---------CTGCTTATC-------------------A-T-CAT-T-TTC---TATAAT---ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................TAATT--------------------------------------------------------------------------------------------------------------------------------GTATGA-------------------TAATTGTTGC............................................................................................................................................................................................................................................................................................................................................................................2111.00101000
....................CCACCGCCAATCGTGGCCAATAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
...........................................TCCAAAGGTAAG-----CAAAACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
............................................................................................................................................................GTATTCG--TATGTGTGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.25100001
.............................................................................................................................................................TATTCG--TATGTGTGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.17101000
droVir3
CCGGCGAGCCGGGCCACCACCCACCGCCCATTGTGGCCAACAATCCAAAGGTAAG-----CAAGGTG----------------TTT--------TATCCCTGCCCC--ATGGCCATCGATTGGTGTGCAGCGTGTTTGTCCA-----TATAT------------------------------------------------------------------------------------------------------------------------------------------GTC--------------TA------------------------------------------------------TATT--TATATATAATGTGTTTATATGTAGA----------------------------------GCTATATGTTTT-----------------------GCTTTAATAGTG-------------------------TATAATAACATGTTAAACATTACTCTGTTGCTTTTC-TCTCTCTCTCTCTCTTTGTCTGTCTCGATCTTCA-AT--TGCAACAACAATTGA-TTGCGCGCATCAACAT---T------------AAATACCACCAACGA---T--TGCTGCTTAATG--------------------TATTTGTAACTGCTATCACC---------ATAAA---ACA---TGT------ACA----------------CCCACAA-------CACA-CACACATC-----------------TACATCTGCAGAGCTCCAAGGTAAT---GC-------AGTACTTAGTAATTGCT-GTC-------------------AGTGTACCT-TGTGA----------CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTCTGTCTCGATCTTC.....................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TGTAGA----------------------------------GCTATATGTTTT-----------------------GCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGGTAAT---GC-------AGTACT............................................................2011.001000000000000000000000000001000000000000000000000000000000000000
.........................GCCCATTGTGGCCAACAATCCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATCTGCAGAGCTCCAAGG..................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCT-GTC-------------------AGTGTACCT-TG..............2111.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTGTCTCGATCTTCA-AT--TG.............................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGCAGAGCTCCAAGGTA................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................TATCCCTGCCCC--ATGGCCATCGATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................TGGCCATCGATTGGTGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAGTG-------------------------TATAATAACATG...............................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATC-----------------TACATCTGCAGAGCTC.......................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
CCGGCGAGCCAGGCCACCACCCACCGCCCATTGTGGCCAATAATCCAAAGGTAAG-----CAAGGTG----------------TGTGTC-------TCGTAGCCA----AGGCCTTCGATTGATGTGTAGCGCGTTTGTCCATCTTTGAATAGTTTA--TCTGTGTGTGTGTGTGTGTATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGA---GC------------TAATCGTATTT--AT-------ATGTATT-----------------------GCACAAACTGTGTTAATATCCAAGTATAA-CTTGATTTA-------------------ACTTTGTTGCTTTTTCTCTCTCTCTC------TATCTGTC-----TC-CA-AT--TTCAACAACAATTGATC-GCGC--A-CATCAACATAATAAATAAATATATATACCAACACCGACT-----GCTGCTTTATG--------------------TATATGTAACTGCTATCATC------------TTACAACA---CACAAAC--ACA----------------CTCATACACAC--TCGCC-CACATACT------------------T-TGCTGCAGAGCTCAAAGGTAAT---GC-------AGTAATTAGCACTCGCTCACA-------------------T------------------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAATTGATC-GCGC--A-CAT..................................................................................................................................................................................................................................................................................................2111.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCC-CACATACT------------------T-TGCTGCAG............................................................................................2211.001100000
droGri2
CATTCGCA---TGT------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGTGTGTGTGTAC----------------------------------------------------------------------------TATA-------AAT--------------GTA--------------TG------------------------------------------------------TAATTGTATATTGTACG------TATGTA-----------------------------GATGTATAT-----GC------------ATAT----------GCGA------------------------A-ATTGGCTTA-------------------AAGTGGCAGC-----------------------------------TA-C------------------------------AACAACAA---T-------------------AACAACAATTTCTGC-CTGCGTC--TC---------------TCCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
CGAGCGAG---GGCTCCCATCCGCCGCCGATAGTGGCCAACAATCCAAAGGTAAG-----CAAGGTG----------------TGT--------GATCGTTGCCTC--CCCACCTTCGAT-GTTGATCCGTGCGTCCATTC----CAGACATATTCG--TTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTGTACTG------TATGTT-----------------------------AATTAATGTTGTGTGTG--TCATTTGCTGTACTCTGGGG-AG-----------------------AGATTT-CAACACTAA---------------GA--TCTCTCTTGCTTTATCTTCCCTATGT-------------C-----C------TCAAACAACAACAATGCGAC----------ATCGA---C----------------ACTGCCATCGA---CTGTGCTGCTTTTCT--------------------TACCTGCTGCCCCCACCATCATCATCATCATGAACGCACCCCCCACTACA--TGCCACGCCCCACACATCTTTCGTATCTAT--CTATA-CCCACATT------CG--CACATGCCTCAACTGCAGAGCACCAAGGTAAT---GCCTAATGCCTT---------TTGTCTGCCAGTGAGAGTCTCCCCCACAGA-----------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCTGGGG-AG-----------------------AGATTT-CAACACTAA---------------GA--......................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
.............................ATAGTGGCCAACAATCCAAAGGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGTACTCTGGGG-AG-----------------------AGATTT-..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
............................................................................................................................................................G--TTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTGTACTG------TATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTGTGTG--TCATTTGCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000001000
droPer2
CGAGCGAG---GGCTCCCATCCGCCGCCGATAGTGGCCAACAATCCAAAGGTAAG-----CAAGGTG----------------TGT--------GATCGTTGCCTC--CCCACCTTCGAT-GTTGATCCGTGCGTCCATTC----CAGACATATTCG--TTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTGTACTG------TATGTT-----------------------------AATTAATGTTGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
------AA---GGCACCCACCCGCCGCCCATTGTGGCCAACAATCCAAAGGTGGGGCTC---------------------------------------ATTCCAAC--AACTCATTCAACTGTTG--------------------------------------------------------------------------------------------------CCATGAATGTT--------------------------------AACTTT-AGTT---CA---TCAAAGTCA---------T-----------------------------------------------------------------------------------------------ATATATA-----TTATCATATTT--TTAAG-----TGT---CTAA---CTTTGT-TC--AA--------------------------AAACAT-TTTGACTAA-------------------GACATGTTGCTTTATCTTCCTTATGC-------------C-----AA-CC-----AACAACAACAATGTTACTGCGC--TTCATCAT---C-------------------GACATTGACTAATGCGGTGCTTACTCCACATTCGAACCGCCCCACACACCCACA-------------CCA--ACCATAAAAACTCAC-CCAAAAAA--CAC----------------CACA-----------TCA-CACACATCAAAACTCG--CACATGCCTCGACTGCAGAACAACAAGGTAAT---GC-------CAT---------CTGTCCACC-------------------TGGGAT--T-TGTGAGG---AT---TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---------CTGTCCACC-------------------TGGGAT--T-TGTG............2211.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCG--CACATGCCTCGACTG...............................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTCAC-CCAAAAAA--CCA----------------...................................................................................................................................................2190.111010000
droBip1
------AA---GGCTCGCATCCTCCGCCCATTGTGGCCAATAATCCAAAGGTGCG-----GA--TCATAAAAAT------TTG---TTGGAAA-AA------TCATACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------TTTATGT---ATTTCAT--------------------------------------------------AA------------------------------------------------TT--TGACT-----TGT---CTAA---CTTTATTCG--AA---------------------------ATCAT-TTTGACTAA-------------------GATCTGTTGCTTTATCTTCCTTATGC-------------C-----CA-CC-----AACAACAACAATGTTACTGCGC--TTCATCAT---C-------------------AACATTGACTAATGCGGTGCTTTCTCGACATCCAAACCGTCCCAAAAA--CACT-------------CGA--ACCAT-------------AAAAAC--TCA----------------CCCACAT-------CTCA-CACACATTTAAACTCG--CACATGCCTCGACTGCAGAA---CAAGGTAAT---GC-------CAT---------CTTTCCATC-------------------TGAG----------A-----------SizeHit CountTotal NormTotal
No Reads
droKik1
CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAA---C-------------------AACATCGACTAATGCGCTGCC--TTAC------------------ACATTTCCA-----TTTCATA------------AA-ACATAT-TCACTCAC--TTA----------------CTCACTGCCAT--ATA-----CACATC------CACATGCACACCTCGACTGCAGAACACTAAGGTAATAAAGC-------CAG---------CTGCTCCGA-------------------G-A-AAA-T-CCA---GGGAAT---ASizeHit CountTotal NormTotal
No Reads
droFic1
CCAGCGAT---GGATCCCACCCACCGCCCATCGTGGCTAACAATCCAAAGGTAAA-----AGCACGTGAACCTCAAAAAGT---GCACCA------------------A--------------AAATGCAT--------CT--------TGT----------------ACCCATTTTTAC------ATCTGGACCATTTCTTATTCGGATTTCGTTTTCACAAAAT--ATCATAAACAATTTAAATAAAATGACCTCGATTCCAAATACTTT-AGT--------------------------------------------------------------------------------------------------------------------------------------TT--------TA--TTAAGTTATG--TT--ACT---------ATCC--AT--------------------------AGACAT-TTGAACTAC-------------------AGTTTCTTGCTTTATCTTCCTTATGC-------------T-----CAACATCTCGAACCACAACAATGCAACTGCGC--AACACCAA---C-------------------AATATCGACTAATGCGCCGCT--TAAC--------------------------A-----CTTCATT------------CCAATCCAT-TGTAAACC--CCA----------------CTCATTTTCAT--CCTCC-CACAAACG------CAAACGCACACATCGACAGCAGAGC---AAGGTAAA---GC-------CAT---------CTGTCCGCC-------------------ATTAAAATT-TCCGA-----------SizeHit CountTotal NormTotal
No Reads
droEle1
CCAGCGAC---GGCTCCCACCCACCGCCCATCGTGGCCAACAATCCAAAGGTAAAATAC-AGCCCATGATCCTT------TTG---GTGGATAAAT------TCATCCC--------------GCATTCTTGTGCC----------------ATTTGTA--------TGTA---------------ATAGGTATCAT------------------------------------TAT--------------------------CAACTTTTTATCGT--------------TTC--------------AC------------------------------------------------------TAATT---------------------------------------------------------------------ATT-----------------------TTACAAATTCA--------------------------------------------------------CTTTTTATACA-AGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---TSizeHit CountTotal NormTotal
No Reads
droRho1
CCAGCGAT---GGATCCCACCCACCGCCCATCGTGGCCAATAATCCAAAGGTAAG-----AGCCTATAAACCTC------TTC---GTTGATATGT------TCATCCC--------------GAATCCGTATGCC----------------ATATGTA--------TGTG---------------ATTGGGATCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------G----------------TTTATTC--------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAA---C-------------------AACATCGACTAATGCGCCGCT---CAC--------------------------A-----CATCATC------------GAAATCCAT-TAAAACAAATTCA----------------CTCATCTCCAT--CCGCC-CTCACATC------CAAACGCA--------CTGCAGAGCACCAAGGTAAA---GC-------CAT---------CTGTCCGCA-------------------GAA-----------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCAGCGAT---GGCTCCCACCCACCGCCCATCGTGGCCAACAATCCAAAGGTATC-----AGCTTGGGAACCTT--------C---A--TATATGATCATTCCATT--TC------------------CATT------------------------------------------------------------------------------------------AACT--ACCATT--------------------------------TGTA----------CA----------AA---------TTTTTGGAGT-------AAATAACTTGAAATAATATTGTAGATCCTATTTGTAACGCCCC------C---------A----TATA---------------TTTATATGT--------TA--TTATTTTGTATGTA--ACCA---CTTCATTCC--AA--------------------------AGACAT-TCCGACTAA-------------------GATATCTTGCTTTATCTTCCTTATGC-------------T-----CAACAAAACGAACCACAACAATGCTAC--------------------------------------------------TGCGCT-----------------------------------A-----CATCATC------------GAAATCCAT-------------A----------------TTCATTCCCATATCCGCTACCCACATT------CAAACGCA--------CTGCAGAGCACCAAGGTAAAG-AGC-------CAT---------CTGTCTGCA-------------------GAGGAATACC-TA--GA---ATTATASizeHit CountTotal NormTotal
No Reads
droEug1
CCAGCGAT---GGATCCCACCCACCGCCCATCGTGGCCAATAATCCAAAGGTAACGCCCGCTAAGTC----------------TTT--------TATTCTTTCTTT--TTCCCATTTC----------TTTT------------------------------------------------------------------------------------------TTCAAGACCATT--------------------------------AGTTTC-AGTT---CACAATTAAAGTAATAACCCTCATT--TA-----------TTTTAATTTGA---------------------------------------------AATATATTTATA---------------CATTTATGT--------TA--TTAAGTTGTATATA--ACCA---CTTCATCCC--AA--------------------------TGACAT-TCCGACTAA-------------------GATCTCTTGCTTTATCTTCCTTATGC-------------T-----CAACAACTCGATCCACAACAATGCTAC-GCGC--CTCACCAA---C-------------------AACATCGAATAATGCGCTGCTG---AC--------------------------C-----CATCAAC------------AATATTCAT----AAAAA--CCG----------------CTCATTCCCAT--CCGCC-CTCATACCC-----CAAACGCACATATTGACCGCAGAGT---AAGGTAAA---GC-------CAT---------CTGTCTGCA-------------------GAGGAAATTC-CA--TA---ATCA-GSizeHit CountTotal NormTotal
No Reads
dm3
CCGGCGAT---GGCTCCCATCCGCCACCCATCGTGGCCAACAATCCAAAGGTAAG-----CGAAACGGAGCCCT------TGG---GTGGATATTC------TCATCGC--------------GAATCCTTGTGTCTGTCTA------A--------------------------------------------------------------------------------------------------------------------------------CTT---------------------------------A--------------------------------------------------------ACGTA-----------------GAAGTCCATACAAA---------------------------TTGTG--ATAT---CTTCATCCC--AAAAA------------------------AAATT-TCCAACTAA-------------------GATATCTTGCTTTATCTTTCTTATGC-------------T-----CCACCACTTGAACCACTACAATGCAAC-GCGC--CTCACCAA---C-------------------AACATCGACTAATGCGCTGCTCTTTGC--------------------------A-----CATCATC------------AAAATCCAT-TCAAAAAC--CCA----------------TTCATTTCCAT--GCGCC-CTTACATC------CAACCGCACGTTTCGAATGCAGAGCCACAAGGTAAA---GC-------CAT---------CTGTCTGCG-------------------GGA-----------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................CACCCATCGTGGCCAACAATCCAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAG-----CGAAACGGAGCCCT------TGG---G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000
.........................................................................................................TCGC--------------GAATCCTTGTGTCTGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---C-------------------AACATCGACTAATGCGC.......................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACCACTACAATGCA................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATC------CAACCGCACGTT......................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................AAAGGTAAG-----CGAAACGGAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......................CCACCCATCGTGGCCAACAATCCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGC-------------T-----CCACCACTTGAACC...........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--CCA----------------TTCATTTCCAT--GCGCC-C...............................................................................................................................2111.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------------AAAATCCAT-TCAAAAAC--CC....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC--------------------------A-----CATCATC------------AAAATCCAT-T...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--CCA----------------TTCATTTCCAT--GCGC..................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACCCATCGTGGCCAACAATCCAAAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAG-----CGAAACGGAGCCCT------TGG---GTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACCACTACAATGCAAC-G............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATGCAGAGCCACAAG...................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCCAT--GCGCC-CTTACATC------..................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................TATTC------TCATCGC--------------GAATCCTTGTGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTGCTCTTTGC--------------------------A-----CATC.........................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGTGGCCAACAATCCAAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCTTTATCTTTCTTATGC-------------T-----CCAC.....................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAG-----CGAAACGGAGCCCT------TGG---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAATGCAGAGCCACAAG...................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
droSim2
CCGGCGAT---GGCTCCCATCCGCCGCCCATCGTGGCCAACAATCCAAAGGTAAG-----CGAAACGGAGCCCTAGGGTTA---GGGTCG------------------A--------------GAATCCTTGTGTCTGCCTA------A--------------------------------------------------------------------------------------------------------------------------------CAT---------------------------------AGTCCTT--------------------------------------------------AAGTG-----------------G--GTCCTTACAAT---------------------------GTGTG--ATAT---CTTCATCCC--AA--------------------------TGACATTTCCAACTAA-------------------GATATCTTGCTTTATCTTCCGTATGC-------------T-----CCACCACTTGAACCACTACAATGCAAC-GCGC--CTCACCAA---C-------------------AACATCGACTAATGCGCTGCTATTTGC--------------------------A-----CATCATC------------AAAATCCAT-TCAAAAAA--CCA----------------TTCATATTCAT--GCGCC-CTCACATC------CAAACGCAAGTTTCGAATGCAGAGCCACAAGGTAAA---GC-------CAT---------CTGTCTGCG-------------------GGA-----------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......T---GGCTCCCATCCGCCGCCCATCGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAATGCAGAGCCACAAGGTA................................................................................2211.00100000001000000000
droSec2
CCGGCGAT---GGCTCCCATCCGCCGCCCATCGTGGCCAACAATCCAAAGGTAAG-----CGAAACGGAGCCCTAGGGTTA---GGGTCG------------------A--------------GAATCCTTGTGTCTGTCTA------A--------------------------------------------------------------------------------------------------------------------------------CAT---------------------------------AGTCCTT--------------------------------------------------AAGTG-----------------G--GTCCTTACAAT---------------------------GTGTG--ATAT---CTTCATCCC--AA--------------------------TGACATTTCCAACTAA-------------------GATATCTTGCTTTATCTTCCGTATGC-------------T-----CAACCACTTAAACCACTACAATGCAAC-GCGC--CTCACCAA---C-------------------AACATCGACTAATGCGCTGCTATTTGC--------------------------A-----CATCATC------------AAAATCCAT-TCAAAAAA--CCA----------------TTCATATTCAT--GCGCC-CTCACATC------CAAACGCAAGTTTCGAATGCAGAGCCACAAGGTAAA---GC-------CAT---------CTGTCTGCG-------------------GGAGAATTTC-CA--GA---ATC--ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCGAATGCAGAGCCACAA....................................................................................2211.0010010
droYak3
CCAGCGAC---GGCTCCCACCCGCCGCCCATCGTGGCCAACAATCCAAAGGTAAA-----CGAACTGGAACCCA------CAG---TCGGATATGT------TCATCTT--------------AAATTCTTGTGTCTGTCTA------G------------------------------------------------------------------------------------------------------------------------------CACAT---------------------------------AG-----------------------------------------------------------A-------------------AGTCCTTACCATCTATAT--------TT--TTAAGCTATGTGTT--ACCA---CTTCACCCC--AA--------------------------AAACAT-TCCAACTAA-------------------GATATCTTGCTTTATCTTCCTTATGC-------------T-----CCACCACTTGAACCACAACAATGCAAC-GCGC--CTCACCAA---C-------------------AACATCGACTAATGCGCTGCC--TTAC--------------------------A-----CATCATC------------GAACTCCAT-TCAAAAAC--CCA----------------TTCATTTCCAT--GCGCC-CTCACATC------CAAACGCACATTTCGACTGCAGAGCAACAAGGTAAA---GC-------CAT---------CTGTCTGCA-------------------GGAG----------G-----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................GGCCAACAATCCAAAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
droEre2
CCGGCGAT---GGCTCCCACCCGCCGCCCATCGTGGCCAACAATCCAAAGGTAAA-----CGAACTGGAAGCCT------CGG---GTGGACATGT------TCATCTC--------------AAATCCCTGTGTCTATCTA------G--------------------------------------------------------------------------------------------------------------------------------CAT---------------------------------A-----------------------------------------------------------TA-------------------AGTCCCTACAATGTATAG--------TT--TTAAGCTATGTGTT--ACCA---CTTCACCCC--AA--------------------------AGACAT-GCGATCTAA-------------------GAAATCTTGCTTTATCTTTCTTATG------------------------------ATCCACTACAATGCAAC-GCGC--CTCACCAC---C-------------------AACATCGACTAATGCGCTGCC--TTAC--------------------------A-----CATCATC------------AAACTCCAT-TCAAAAAC--CCA----------------TTCATTTCCAT--GCGCC-CTCACATT------CAAACGCACATTTCGACTGCAGAGCAACAAGGTAAA---GC-------CAT---------CTGTCTGCA-------------------GGAG----------G-----------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 05:43 AM