dwi_2848

exon [dwil_GLEANR_9201:1]; exon [dwil_GLEANR_9201:2]; CDS [Dwil\GK25033-cds]; CDS [Dwil\GK25033-cds]; intron [Dwil\GK25033-in]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AAACTCTGGGAATGAGTTTACTCACAGCTTCGCAGCGTTTTAAGACAAAGGTGTGTGCAATAAGCGGAGGGAGGGAATGGGAGACACACATAAACTCATACATATGCATTTAATTGAAAGAGAAGAGTTCAAAGTTTCTTCCTCTTCTGATTAGTTAAAAGGTGAAAGCTAAAACCTGGCATAATTGCTATCTATCATTTTTGTTTTTTCTCTTTCATTTCCATTTTGTAGACCTTTGCCAATCCCGAGGATTTGATGTCACCCAAGTTGAAAGTTAAATT *************************************************************.....((((((((((..((...........((((.........((......))........))))))...))))))))))****************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V118 embryo	V117 male body	M045 female body	V119 head	M020 head
...............................................................GCGGAGGGAGGGAATGGG........................................................................................................................................................................................................	18	0	1	40.00	40	8	8	10	14	0
...............................................................GCGGAGGGAGGGAATGGGAG......................................................................................................................................................................................................	20	0	1	10.00	10	3	3	3	1	0
..............................................................AGCGGAGGGAGGGAATGGG........................................................................................................................................................................................................	19	0	1	10.00	10	4	4	1	1	0
...............................................................GCGGAGGGAGGGAATGGGA.......................................................................................................................................................................................................	19	0	1	4.00	4	1	0	2	1	0
..............AGTTTACTCACAGCTTCGCAGCGT...................................................................................................................................................................................................................................................	24	0	1	4.00	4	1	2	1	0	0
...............GTTTACTCACAGCTTCGCAGCGTT..................................................................................................................................................................................................................................................	24	0	1	3.00	3	2	1	0	0	0
..............................................................AGCGGAGGGAGGGAATGGGAG......................................................................................................................................................................................................	21	0	1	3.00	3	1	0	1	1	0
..............................................................AGCGGAGGGAGGGAATGGGA.......................................................................................................................................................................................................	20	0	1	2.00	2	0	0	1	1	0
...............GTTTACTCACAGCTTCGCAGCGT...................................................................................................................................................................................................................................................	23	0	1	2.00	2	0	2	0	0	0
.............................................................................................................................................................................................................................................................TGATGTCACCCAAGTTGAAAGT......	22	0	1	2.00	2	1	1	0	0	0
.................................................................................................................................................................................................................................................ATCCCGAGGATTTGATGT......................	18	0	1	2.00	2	2	0	0	0	0
..............AGTTTACTCACAGCTTCGC........................................................................................................................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0
...........................................................................................................................................................................................................................................................TTTGATGTCACCCAAGTTGAAAGT......	24	0	1	1.00	1	0	1	0	0	0
AAACTCTGGGAATGAGTT.......................................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................ATTTCCATTTTGTAGACC...............................................	18	0	1	1.00	1	0	0	0	0	1
.................TTACTCACAGCTTCGCAGCGT...................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................GAGGATTTGATGTCACCCAAGTTGAA.........	26	0	1	1.00	1	0	0	1	0	0
.........GAATGAGTTTACTCACAGCTTCGCAGC.....................................................................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0
...............................................................GCGGAGGGAGGGAATGGGAGA.....................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................TTGATGTCACCCAAGTTGAAAGT......	23	0	1	1.00	1	1	0	0	0	0
..................TACTCACAGCTTCGCAGCGTTT.................................................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
...............GTTTACTCACAGCTTCGC........................................................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
..............AGTTTACTCACAGCTTCGCAGCGTT..................................................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................GATGTCACCCAAGTTGAAAG.......	20	0	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................................CCTTTGCCAATCCCGAGGATTTGATG.......................	26	0	1	1.00	1	1	0	0	0	0
...................ACTCACAGCTTCTCAGCGTTTTAAGA............................................................................................................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0
.............GAGTTTACTCACAGCTTCGCAGCGTT..................................................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0
................TTTACTCACAGCTTCGCAGCGTTTTAAG.............................................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................GTCACCCAAGTTGAAAGTTA....	20	0	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................................................................................................TGATGTCACCCAAGTTGAAAGTTAA...	25	0	1	1.00	1	1	0	0	0	0
.................TTACTCACAGCTTCGCAGC.....................................................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................GACCTTTGCCAATCCCGAGGA..............................	21	0	1	1.00	1	0	0	1	0	0
..............AGTTTACTCACAGCTTCGCAGCGTTTT................................................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
...........................................................................................................................AGAGTTCAAAGTTTCTTCCT..........................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
..................TACTCACAGCTTCGCAGCGT...................................................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0
.........................................................CAATAAGCGGAGGGAAAGAA............................................................................................................................................................................................................	20	2	2	0.50	1	0	0	1	0	0
.........................................................CAATAAGCGGAGGGAAAGA.............................................................................................................................................................................................................	19	2	4	0.25	1	0	0	1	0	0
.........................................................CAATAAGCGGAGGAAAGGA.............................................................................................................................................................................................................	19	2	5	0.20	1	0	0	1	0	0
...............................................................GAGGAGGGAGGGAATGGG........................................................................................................................................................................................................	18	1	7	0.14	1	0	0	0	1	0
..........................................................AATAAGCGGAGGGAAAGAA............................................................................................................................................................................................................	19	2	8	0.13	1	0	0	1	0	0
..........................................................AATAAGCGGAGGGAAAGA.............................................................................................................................................................................................................	18	2	17	0.12	2	0	1	1	0	0
..................................................................GAGGGTGGGAATGGGAGAA....................................................................................................................................................................................................	19	2	12	0.08	1	0	0	1	0	0
.........................................................CAATAAGCGGAGGAAGAGAAA...........................................................................................................................................................................................................	21	3	20	0.05	1	0	0	1	0	0
...........................................................ATAAGCGGAGGGAAAGAA............................................................................................................................................................................................................	18	2	20	0.05	1	0	0	1	0	0

TTTGAGACCCTTACTCAAATGAGTGTCGAAGCGTCGCAAAATTCTGTTTCCACACACGTTATTCGCCTCCCTCCCTTACCCTCTGTGTGTATTTGAGTATGTATACGTAAATTAACTTTCTCTTCTCAAGTTTCAAAGAAGGAGAAGACTAATCAATTTTCCACTTTCGATTTTGGACCGTATTAACGATAGATAGTAAAAACAAAAAAGAGAAAGTAAAGGTAAAACATCTGGAAACGGTTAGGGCTCCTAAACTACAGTGGGTTCAACTTTCAATTTAA ****************************************************************************************************************************************.....((((((((((..((...........((((.........((......))........))))))...))))))))))*************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V117 male body	V118 embryo	V119 head
...............................................................................................................................................................................................................ATGAGAAAGTAAAGGTAAA.......................................................	19	1	4	0.25	1	1	0	0
..................................................................................................................................TGACAAACAAGGAGAAGACTA..................................................................................................................................	21	3	7	0.14	1	1	0	0
...................................................................................................................................................................................................GTGAAATCCAAAAAGAGAAAGTA...............................................................	23	3	13	0.08	1	0	1	0
...................TGAGTGTCGAAGCCGTGCA...................................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004909:9469901-9470181 -	dwi_2848	AAACTCTGGGAATGAGTTTACTCACAGCTTCGCAGCGTTTTAAGACAAAGGTGTGTGCAATAAGCGGA--GG--------------------GAGG------G---------------------------------------------------------------AATGGGA--------GACACACATAAAC-TCATACATATGCATTTAATTGAAAGAGAAGAGTTCAAAGTTTCTTCCTCTTCTGATTAGTTAAAAGGTGAAAGCTAAAACCTGGCATAATTGCTATCTATCA---------------------TTTTTGTTTTTTCTCTTT--CATTTCCATTTTGTAGACCTTTGCCAATCCCGAGGATTTGATGTCACCCAAGTTGAAAGTTAAATT
droVir3	scaffold_12970:11681422-11681629 -	dvi_14034	AAATGTTGGCCATGTCTCTGCTTACGGCCATACAGCGCTTCAAGACCAAGGTAAGCGAGCGGGGAAGG--AG-G------------ATTAGT---------T---------------------------------AGCTGCTGGGTCAAAGTCCGGTCAGCAGGTGAAAGCGG---------------CCAGATAATAAACATA-------TTTT-------------------------------------------------------------------------------------------------------------------GACATTGGT-TCTT-GCCTTTCAGACATTTGCCAATCAGGAGGATTTGATGTCACCAAAGCTGAAGGTTAAATT
droMoj3	scaffold_6473:9557351-9557565 +		AAATGTTGGCCATGTCTTTGCTTACAGCCATGCAACGTTTCAAGACCAAGGTAAGCTAGAGTGGA-------------------------------GCCGTTGCTACCA----------------------------------GGTCAAAGTCCGGTCAGCAGGTGAAAGTGC---------------ATAGATTATGAGAGCA-------TT-------------------------------------------------------------------------------TATCA--------------ATTATTGTTGTTGCTA------TTT--C-GCTTGGCTCTCTAGACATTCGCCAATCCGGAGGATTTGATGTCACCAAAGTTGAAGGTTAAATT
droGri2	scaffold_15203:3650947-3651181 -		AAATGTTGGCCATGTCCCTACTCACGGCCATGCAACGTTTTAAGACCAAGGTAAGGGTGAAAGGAAGAGGGAGGTCAACATGCATATATAGT---------T---------------------------------GGCTGCT-GGTCAAAGTCCAGCCACCTGGCGAATGCGG--CTACAA-------ACTA-TTATGAACAGA-------TTTTAAAT------------------------------------------------------------------------------------------------------GACAT----GACATT--T-TCGTTGCTTTGCAGACATTCGCCAATCAGGAGGATTTGATGTCCCCAAAGCTGAAGGTCAAATT
dp5	XL_group3a:1219481-1219679 +		AAATGCTGCTCATGAGCCTCCTCACGGCCGTGCAGCGCTTCAAGACGAAGGTGTGTGTGTGTGTG-------------------------GCTAGGGCTGCGGCT--TA----------------------------------GGTCAAAGTCTCATT--TAAGTGAAAGTC-------------------------------------------------------------------------------------------------------------------------------------------ACTAACGGTGCCGCTATCTCTCTAT--C-ACCCGACATTCTAGACCTTTGCCAATCCCGAGGATCTGATGTCGCCCAAGCTGAAGGTCAAATT
droPer2	scaffold_15:1667748-1667944 -		AAATGCTGCTCATGAGCCTCCTCACGGCCGTGCAGCGCTTCAAGACGAAGGTGTGTGTGTGTG---------------------------GCTAGGGCTGCGGCT--TA----------------------------------GGTCAAAGTCTCATT--TAAGTGAAAGTC-------------------------------------------------------------------------------------------------------------------------------------------ACTAACGGTGCCGCTATCTCTCTAT--C-TCCCGACATTCTAGACCTTTGCCAATCCCGAGGATCTGATGTCGCCCAAGCTGAAGGTCAAATT
droAna3	scaffold_13117:1219640-1219939 +		AGATGCTGCTGATGTCACTGCTCACAGCCCTGCAGCGTTTCCGGTACAAGGTAAGGCATACATATGCA--TG--------------AGTGACTGCACTTGCTTCA--AAGGTCATCATTTCGCCATTCCGTTCGCAGCTGCTGGCTCTAGTTCCGCTG--------AAACTACGGCGCAA-------------G-GTAACCATC-------CAGCAAAACCCA------------------------------------------------------CAAGTCATCGCATTCTAACCTGTTTGGCGGGGTTCTAAAACATCCAAATGACCAATTTT--A-TCTCGAACTTTTAGATTTTCCCCAACGAGGAGGATCTGTTCTTCAAGAACATCGAAGTCCAGTT
droBip1	scf7180000396425:896033-896332 -		AGATGCTGCTGATGTCATTGCTCACAGCCCTGCAGCGTTTCCGGTATAAGGTAAGGCATACATATGCA--TG--------------AGTGGCTGCACTTGCTTCA--AAGGTCATCATTTCGCCATTCCGTTCGCAGCTGCTGGCTCTAGTTCCGCTG--------AAACTACGGCGCAA-------------G-GTAACCATC-------CAGCAAAAACAA------------------------------------------------------CAAGTCATCGCATTCTAACCTGTTTGGCGGGCTTCTAAAATAATCAAATGACTGTTTTG--A-TCTTGAACTTTTAGATATTCCCCAACGAGGAGGATCTGTTCTTCAAGAACATTGAAGTCCAGTT
droKik1	scf7180000302395:315036-315119 +		TTTTATTTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTTT--C-TCTTCACTTTTCAGACCTTTGCCAACCCTGAGGATCTTATGTCCCCCAAGCTGAAGGTCAAGTT
droFic1	scf7180000454077:418166-418235 +		CAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--CCTTTT-TGTTTACAGACCTTTGCCAACCCTGAGGACTTGATGTCCCCCAAGCTGAAGGTCAAGTT
droEle1	scf7180000490214:975767-975866 -		AAATGCTGCTCATGAGTCTTTTGACCGCCGTCCAGCGTTTTAAGACCAAGGTGAGAGAGGGGGTG-----------------------------------------------------------------------------------------------------AAAACAA---------------ATAAAT-ATAAACATA-------AAATAAAAAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droRho1	scf7180000780082:279722-279806 -		AAATTTTTCTCATGAGCCTTTTGACCGCCGTCCAGCGATTCAAGACGAAGGTGAGAGGGGGTG-------------------------------------------------------------------------------------------------------AAAGTAC---------------ATAAAT-ATAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATA
droBia1	scf7180000302187:573482-573549 -		TTTCC-----AAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CGTTTTCAGACCTTCGCCAACCCCGAGGACCTGATGTCGCCCAAGCTGAAGGTCAAGTT
droTak1	scf7180000415564:113248-113336 -		AAATGCTGCTCATGAGCCTTTTGACCGCCATCCAGCGATTCAAGACGAAGGTGAGAGAGAGAGAGAGA--GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAGGGGGGGGTCGCACA
droEug1	scf7180000408193:539807-539895 -		AAATCCTGCTCATGAGCCTTTTGACAGCCATCCAGCGATTCAAGACAAAGGTGAGAGGGTGTAAAGGG--AA---------------------AGGGGTGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGGGAGA
dm3	chrX:20914673-20914756 +		ATTTC---------GATTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGG--TATCTT-CATTTTCAGACCTTCGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTT
droSim2	x:19639784-19639874 +		AAATGCTGCTGATGAGCCTTCTGACAGCCATCCAGCGGTTCAAGACGAAGGTGGGTGAGGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGGCGGGGCGGGGTGCGGGTCGCACA
droSec2	scaffold_8:3202190-3202279 +		AAATGCTGCTGATGAGCCTCCTGACAGCCATCCAGCGGTTCAAGACGAAGGTGGGTGAGGGGAAAGGG--CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGGGAGCGGGTCGCACA
droYak3	X:20121887-20121963 +		TTTTCTAATCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTT-CGTTTTCAGACCTTCGCCAACCCCGAGGACCTGTTGTCCCCCAAGCTAAAGGTCAAGTT
droEre2	scaffold_4690:17486988-17487084 +		TAT----------------------------GCATTGCTTTTGTTCGATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTCT-------------------------------------------------------------------------------------------------------------------AATCGT--TATCCT-CGTTTTCAGACCTTCGCCAACCCCGAGGATCTGATGTCCCCCAAGCTGAAGGTTAAGTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

AAACTCTGGGAATGAGTTTACTCACAGCTTCGCAGCGTTTTAAGACAAAGGTGTGTGCAATAAGCGGA--GG--------------------GAGG------G---------------------------------------------------------------AATGGGA--------GACACACATAAAC-TCATACATATGCATTTAATTGAAAGAGAAGAGTTCAAAGTTTCTTCCTCTTCTGATTAGTTAAAAGGTGAAAGCTAAAACCTGGCATAATTGCTATCTATCA---------------------TTTTTGTTTTTTCTCTTT--CATTTCCATTTTGTAGACCTTTGCCAATCCCGAGGATTTGATGTCACCCAAGTTGAAAGTTAAATT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................GCGGA--GG--------------------GAGG------G---------------------------------------------------------------AATGGG........................................................................................................................................................................................................................................	18	1	40.00	40	0	10	8	8	14
...............................................................GCGGA--GG--------------------GAGG------G---------------------------------------------------------------AATGGGA--------G..............................................................................................................................................................................................................................	20	1	10.00	10	0	3	3	3	1
..............................................................AGCGGA--GG--------------------GAGG------G---------------------------------------------------------------AATGGG........................................................................................................................................................................................................................................	19	1	10.00	10	0	1	4	4	1
...............................................................GCGGA--GG--------------------GAGG------G---------------------------------------------------------------AATGGGA--------...............................................................................................................................................................................................................................	19	1	4.00	4	0	2	0	1	1
..............AGTTTACTCACAGCTTCGCAGCGT..............................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	1	2	1	0
...............GTTTACTCACAGCTTCGCAGCGTT.............................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	1	2	0
..............................................................AGCGGA--GG--------------------GAGG------G---------------------------------------------------------------AATGGGA--------G..............................................................................................................................................................................................................................	21	1	3.00	3	0	1	0	1	1
..............................................................AGCGGA--GG--------------------GAGG------G---------------------------------------------------------------AATGGGA--------...............................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	1
...............GTTTACTCACAGCTTCGCAGCGT..............................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TGATGTCACCCAAGTTGAAAGT......	22	1	2.00	2	0	0	1	1	0
............................................................................................................................................................................................................................................................................................................................................................................ATCCCGAGGATTTGATGT......................	18	1	2.00	2	0	0	0	2	0
..............AGTTTACTCACAGCTTCGC...................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................................................................................................TTTGATGTCACCCAAGTTGAAAGT......	24	1	1.00	1	0	0	1	0	0
AAACTCTGGGAATGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................ATTTCCATTTTGTAGACC...............................................	18	1	1.00	1	1	0	0	0	0
.................TTACTCACAGCTTCGCAGCGT..............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GAGGATTTGATGTCACCCAAGTTGAA.........	26	1	1.00	1	0	1	0	0	0
.........GAATGAGTTTACTCACAGCTTCGCAGC................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...............................................................GCGGA--GG--------------------GAGG------G---------------------------------------------------------------AATGGGA--------GA.............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTGATGTCACCCAAGTTGAAAGT......	23	1	1.00	1	0	0	0	1	0
..................TACTCACAGCTTCGCAGCGTTT............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...............GTTTACTCACAGCTTCGC...................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............AGTTTACTCACAGCTTCGCAGCGTT.............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................GATGTCACCCAAGTTGAAAG.......	20	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................CCTTTGCCAATCCCGAGGATTTGATG.......................	26	1	1.00	1	0	0	0	1	0
.............GAGTTTACTCACAGCTTCGCAGCGTT.............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
................TTTACTCACAGCTTCGCAGCGTTTTAAG........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................GTCACCCAAGTTGAAAGTTA....	20	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................TGATGTCACCCAAGTTGAAAGTTAA...	25	1	1.00	1	0	0	0	1	0
.................TTACTCACAGCTTCGCAGC................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACCTTTGCCAATCCCGAGGA..............................	21	1	1.00	1	0	1	0	0	0
..............AGTTTACTCACAGCTTCGCAGCGTTTT...........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................AGAGTTCAAAGTTTCTTCCT.................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..................TACTCACAGCTTCGCAGCGT..............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0

droVir3

AAATGTTGGCCATGTCTCTGCTTACGGCCATACAGCGCTTCAAGACCAAGGTAAGCGAGCGGGGAAGG--AG-G------------ATTAGT---------T---------------------------------AGCTGCTGGGTCAAAGTCCGGTCAGCAGGTGAAAGCGG---------------CCAGATAATAAACATA-------TTTT-------------------------------------------------------------------------------------------------------------------GACATTGGT-TCTT-GCCTTTCAGACATTTGCCAATCAGGAGGATTTGATGTCACCAAAGCTGAAGGTTAAATT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................TTGCCAATCAGGAGGATTTGAT........................	22	1	3.00	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATTTGCCAATCAGGAGGATTT...........................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTGATGTCACCAAAGCTGAAGGT......	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................CACCAAAGCTGAAGGTTAA...	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTACGGCCATACAGCGCTTCAA.........................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TTGCCAATCAGGAGGATTTGATGT......................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................AATCAGGAGGATTTGATG.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AATGTTGGCCATGTCTCTGCTTA............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACATTTGCCAATCAGGAGGATTT...........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CTTACGGCCATACAGC................................................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TTTGATGTCACCAAAGCTGAAG........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATTTGCCAATCAGGAGGATTTGAC........................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TCTGCTTACGGCCATACAGC................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATTTGCCAATCAGGAGGATTTGATGTC.....................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ACAGCGCTTCAAGACCAAGAC................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATGTCTCTGCTTACGGCC.......................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CATTTGCCAATCAGGAGGATTTGATGT......................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TTGCCAATCAGGAGGATTTG..........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATTTGATGTCACCAAAGCTGA..........	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AAATGTTGGCCATGTCTCTGC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CAGGAGGATTTGATGTCACC..................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACATTTGCCAATCAGGAGG...............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGGCCATGTCTCTGCTTACGG.........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GGCCATACAGCGCTTCAAGACCAAGAC................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CAAAGTCCGGTCAGCAGGTGAAAGCGG---------------C.......................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................AATCAGGAGGATTTGATGT......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CATACAGCGCTTCAAGACCAAGAC................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATTTGCCAATCAGGAGGAT.............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AAATGTTGGCCATGTCTCTGCTTA............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CATACAGCGCTTCAAGACCAA...................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TGCCAATCAGGAGGATTTGATGT......................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CAATCAGGAGGATTTGATGT......................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................ATGTCACCAAAGCTGAAGGTTAA...	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTGATGTCACCAAAGCTGAAG........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACATTTGCCAATCAGGAGGAT.............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACATTTGCCAATCAGGAGGAA.............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GTCACCAAAGCTGAAGGT......	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACATTTGCCAATCAGGAGGATT............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TACGGCCATACAGCGCTTCAAGACCA....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATTTGATGTCACCAAAGCTGAAGGTT.....	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CATTTGCCAATCAGGAGGATTTGAT........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TTTGCCAATCAGGAGGATTTGATGTCAC...................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GATTTGATGTCACCAAAGCTGAAG........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TTTGCCAATCAGGAGGATTTGATGT......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................ATTTGCCAATCAGGAGGA..............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CATGTCTCTGCTTACGGCC.......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTCTGCTTACGGCCATACAGCGCTT............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCCATGTCTCTGCTTACGGCC.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATTTGCCAATCAGGAGGATTTGATGT......................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GATTTGATGTCACCAAAGC.............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATGTTGGCCATGTCTCTGCTTA............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CATGTCTCTGCTTACGGCCATACAGCGC..............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTGATGTCACCAAAGCTGAA.........	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATTTGATGTCACCAAAGCTGAA.........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

AAATGTTGGCCATGTCTTTGCTTACAGCCATGCAACGTTTCAAGACCAAGGTAAGCTAGAGTGGA-------------------------------GCCGTTGCTACCA----------------------------------GGTCAAAGTCCGGTCAGCAGGTGAAAGTGC---------------ATAGATTATGAGAGCA-------TT-------------------------------------------------------------------------------TATCA--------------ATTATTGTTGTTGCTA------TTT--C-GCTTGGCTCTCTAGACATTCGCCAATCCGGAGGATTTGATGTCACCAAAGTTGAAGGTTAAATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
AAATGTTGGCCATGTCTTTGC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CATTCGCCAATCCGGAGGA..............................	19	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATTCGCCAATCCGGAGGATTTGATGT......................	26	1	1.00	1	0	0	0	0	0	1
.............................ATGCAACGTTTCAAGACCAAGA.................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TT--C-GCTTGGCTCTCTAGACAT..............................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATTCGCCAATCCGGAGGATTT...........................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CCGGAGGATTTGATGTCACC..................	20	1	1.00	1	0	0	1	0	0	0
.AATGTTGGCCATGTCTTTGCT..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATTTGATGTCACCAAAGTTG...........	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................AATCCGGAGGATTTGATGTCACCAAAGTT............	29	1	1.00	1	1	0	0	0	0	0
...............................GCAACGTTTCAAGACCAAGAC................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATTCGCCAATCCGGAGGATTTGATG.......................	25	1	1.00	1	1	0	0	0	0	0
.....................TTACAGCCATGCAACGTTTCAAGACCAA...................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................GAGAGCA-------TT-------------------------------------------------------------------------------TATCA--------------ATTATTGTTG...................................................................................	24	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................ATTCGCCAATCCGGAGGATTTG..........................	22	1	1.00	1	1	0	0	0	0	0

droGri2

AAATGTTGGCCATGTCCCTACTCACGGCCATGCAACGTTTTAAGACCAAGGTAAGGGTGAAAGGAAGAGGGAGGTCAACATGCATATATAGT---------T---------------------------------GGCTGCT-GGTCAAAGTCCAGCCACCTGGCGAATGCGG--CTACAA-------ACTA-TTATGAACAGA-------TTTTAAAT------------------------------------------------------------------------------------------------------GACAT----GACATT--T-TCGTTGCTTTGCAGACATTCGCCAATCAGGAGGATTTGATGTCCCCAAAGCTGAAGGTCAAATT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....TTGGCCATGTCCCTACTCACGGC........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
............................................................................................................................................................................................................................................................................................................................................................................ATCAGGAGGATTTGATGTCC....................	20	1	1.00	1	0	1
......................................................................................................................................................................................................................................................................................................................................................................................TTTGATGTCCCCAAAGCT............	18	1	1.00	1	1	0

dp5

AAATGCTGCTCATGAGCCTCCTCACGGCCGTGCAGCGCTTCAAGACGAAGGTGTGTGTGTGTGTG-------------------------GCTAGGGCTGCGGCT--TA----------------------------------GGTCAAAGTCTCATT--TAAGTGAAAGTC-------------------------------------------------------------------------------------------------------------------------------------------ACTAACGGTGCCGCTATCTCTCTAT--C-ACCCGACATTCTAGACCTTTGCCAATCCCGAGGATCTGATGTCGCCCAAGCTGAAGGTCAAATT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................GACCTTTGCCAATCCCGAG................................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...TGCTGCTCATGAGCCTCCTCACGGCC.......................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TCTGATGTCGCCCAAGCTGAAGGTC.....	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.AATGCTGCTCATGAGCCTCCT..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.AATGCTGCTCATGAGCCTCCTC.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.AATGCTGCTCATGAGCCTCC...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACCTTTGCCAATCCCGAGG...............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CTGATGTCGCCCAAGCTGAAG........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.AATGCTGCTCATGAGCCTCCTCACGGCC.......................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GATCTGATGTCGCCCAAGCTGAAGGT......	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CCCGAGGATCTGATGTCGCCCA................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
AAATGCTGCTCATGAGCCTCCTCAC...........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCCAATCCCGAGGATCTGATGTC.....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GATGTCGCCCAAGCTGAAGGTCA....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CTGATGTCGCCCAAGCTGAA.........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACCTTTGCCAATCCCGAGGATCTGAT........................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............TGAGCCTCCTCACGGCCGTGCAGC................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........................GGCCGTGCAGCGCTTCAAGACGAAGAC................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......GCTCATGAGCCTCCTCACGGCC.......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................TGTGTGTGTGTGTG-------------------------GCTAGGGCTGC...............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................CAGCGCTTCAAGACGAAGAC................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAATGCTGCTCATGAGCCTCCTCACGGCCGTGCAGCGCTTCAAGACGAAGGTGTGTGTGTGTG---------------------------GCTAGGGCTGCGGCT--TA----------------------------------GGTCAAAGTCTCATT--TAAGTGAAAGTC-------------------------------------------------------------------------------------------------------------------------------------------ACTAACGGTGCCGCTATCTCTCTAT--C-TCCCGACATTCTAGACCTTTGCCAATCCCGAGGATCTGATGTCGCCCAAGCTGAAGGTCAAATT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................ATCTGATGTCGCCCAAGCTGAAGGT......	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................GAGGATCTGATGTCGCCCA................	19	1	1.00	1	0	0	1	0	0	0
......................CACGGCCGTGCAGCGCTTC...........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................CTGATGTCGCCCAAGCTGAAG........	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................ATGTCGCCCAAGCTGAAGGT......	20	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CGAGGATCTGATGTCGCCC.................	19	1	1.00	1	1	0	0	0	0	0
AAATGCTGCTCATGAGCCTCCT..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................GATGTCGCCCAAGCTGAA.........	18	1	1.00	1	0	0	1	0	0	0
.....................................CTTCAAGACGAAGGTGTGTGT..........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................CCGAGGATCTGATGTCGCCC.................	20	1	1.00	1	0	0	0	0	1	0
......................................TTCAAGACGAAGGTGTGTGT..........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................................AGCGCTTCAAGACGAAGACC...............................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	1	0	0	0	0

droAna3

AGATGCTGCTGATGTCACTGCTCACAGCCCTGCAGCGTTTCCGGTACAAGGTAAGGCATACATATGCA--TG--------------AGTGACTGCACTTGCTTCA--AAGGTCATCATTTCGCCATTCCGTTCGCAGCTGCTGGCTCTAGTTCCGCTG--------AAACTACGGCGCAA-------------G-GTAACCATC-------CAGCAAAACCCA------------------------------------------------------CAAGTCATCGCATTCTAACCTGTTTGGCGGGGTTCTAAAACATCCAAATGACCAATTTT--A-TCTCGAACTTTTAGATTTTCCCCAACGAGGAGGATCTGTTCTTCAAGAACATCGAAGTCCAGTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................................................................................................................................................................GATTTTCCCCAACGAGGAGGAC.............................	22	1	1.00	1	0	1	0	0	0	0

droBip1

AGATGCTGCTGATGTCATTGCTCACAGCCCTGCAGCGTTTCCGGTATAAGGTAAGGCATACATATGCA--TG--------------AGTGGCTGCACTTGCTTCA--AAGGTCATCATTTCGCCATTCCGTTCGCAGCTGCTGGCTCTAGTTCCGCTG--------AAACTACGGCGCAA-------------G-GTAACCATC-------CAGCAAAAACAA------------------------------------------------------CAAGTCATCGCATTCTAACCTGTTTGGCGGGCTTCTAAAATAATCAAATGACTGTTTTG--A-TCTTGAACTTTTAGATATTCCCCAACGAGGAGGATCTGTTCTTCAAGAACATTGAAGTCCAGTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTTTATTTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCTTT--C-TCTTCACTTTTCAGACCTTTGCCAACCCTGAGGATCTTATGTCCCCCAAGCTGAAGGTCAAGTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--CCTTTT-TGTTTACAGACCTTTGCCAACCCTGAGGACTTGATGTCCCCCAAGCTGAAGGTCAAGTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAATGCTGCTCATGAGTCTTTTGACCGCCGTCCAGCGTTTTAAGACCAAGGTGAGAGAGGGGGTG-----------------------------------------------------------------------------------------------------AAAACAA---------------ATAAAT-ATAAACATA-------AAATAAAAAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAATTTTTCTCATGAGCCTTTTGACCGCCGTCCAGCGATTCAAGACGAAGGTGAGAGGGGGTG-------------------------------------------------------------------------------------------------------AAAGTAC---------------ATAAAT-ATAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTCC-----AAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-CGTTTTCAGACCTTCGCCAACCCCGAGGACCTGATGTCGCCCAAGCTGAAGGTCAAGTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAATGCTGCTCATGAGCCTTTTGACCGCCATCCAGCGATTCAAGACGAAGGTGAGAGAGAGAGAGAGA--GA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGAGGGGGGGGTCGCACA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAATCCTGCTCATGAGCCTTTTGACAGCCATCCAGCGATTCAAGACAAAGGTGAGAGGGTGTAAAGGG--AA---------------------AGGGGTGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGGGAGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATTTC---------GATTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGG--TATCTT-CATTTTCAGACCTTCGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................CGCCAACCCCGAGGACCTGATGT......................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................CCAACCCCGAGGACCTGATG.......................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCCCAAGCTGAAGGTC.....	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCTGAAGGTCAAGTT	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TCCCCCAAGCTGAAGGTCAAG..	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAATGCTGCTGATGAGCCTTCTGACAGCCATCCAGCGGTTCAAGACGAAGGTGGGTGAGGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGGCGGGGCGGGGTGCGGGTCGCACA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................ATCCAGCGGTTCAAGACGA....................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CATCCAGCGGTTCAAGAC......................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCCTTCTGACAGCCATCCAGC................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................CGGGGCGGGGTGCGGG.......	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......TGCTGATGAGCCTTCTGACAGCCA......................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..ATGCTGCTGATGAGCCTTCTGAC...........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................GTGGGTGAGGGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGGCGGGG..................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........GATGAGCCTTCTGACAGCC.......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................GGGGCGGGGTGCGGG.......	15	6	0.83	5	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0	0	0

droSec2

AAATGCTGCTGATGAGCCTCCTGACAGCCATCCAGCGGTTCAAGACGAAGGTGGGTGAGGGGAAAGGG--CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGGGAGCGGGTCGCACA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................GTGGGTGAGGGGAAAGGG--CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC.................	23	1	13.00	13	4	3	0	6
...................................................TGGGTGAGGGGAAAGGG--CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGC.................	22	1	3.00	3	0	2	0	1
..................................................GTGGGTGAGGGGAAAGGG--CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGG..............	26	1	2.00	2	0	1	0	1
....................CTGACAGCCATCCAGCGGTT............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
......TGCTGATGAGCCTCCTGACAGCC.......................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
........CTGATGAGCCTCCTGACAGCC.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
...........................................GACGAAGGTGGGTGAGGGGAAA...................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
..................................................GTGGGTGAGGGGAAAGGG--..............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
...................................CGGTTCAAGACGAAGGTGGGTGAG.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1
..................................................GTGGGTGAGGGGAAAGGG--CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG..................	22	1	1.00	1	1	0	0	0
..............................TCCAGCGGTTCAAGACGAAG..................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
.............................ATCCAGCGGTTCAAGACGAAG..................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
..................................................GTGGGTGAGGGGAAAGGG--CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCT................	24	1	1.00	1	0	1	0	0
..................................................GTGGGTGAGGGGAAAGGG--CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA.................	23	1	1.00	1	0	0	0	1
...................CCTGACAGCCATCCAGCGGTT............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
..................................................GTGGGTGAGGGGAAAGGG--CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGG...............	25	1	1.00	1	0	0	0	1

droYak3

TTTTCTAATCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTT-CGTTTTCAGACCTTCGCCAACCCCGAGGACCTGTTGTCCCCCAAGCTAAAGGTCAAGTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................GTTGTCCCCCAAGCTAAAGGT......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CCTGTTGTCCCCCAAGCTAAAG........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................GACCTTCGCCAACCCCGAGGAC.............................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................GACCTGTTGTCCCCCAAGCTAAAGGT......	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TAT----------------------------GCATTGCTTTTGTTCGATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTCT-------------------------------------------------------------------------------------------------------------------AATCGT--TATCCT-CGTTTTCAGACCTTCGCCAACCCCGAGGATCTGATGTCCCCCAAGCTGAAGGTTAAGTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................TCTGATGTCCCCCAAGCTGAAGGT......	24	1	1.00	1	1	0	0	0	0	0	0

dwi_2848

scf2_1100000004909:9469951-9470131 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-11.5	-11.4	-11.3