ID:

dwi_2808

 Coordinate:

scf2_1100000004909:7917471-7917621 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.4 -10.3 -10.2 -10.1

Flybase annnotation

CDS [Dwil\GK25834-cds]; exon [dwil_GLEANR_9968:4]; intron [Dwil\GK25834-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGACAGCGGCGTCGGCTGCTGCTGCTGAGAGCAACACTGAAGCACTTTCAGTGACCAATCCAGCATCATCATCATCGGCAGCCGAGAAGACGTCCTCGACATCGTCGAAATCGTTGCTAAATGATGCCAGCGAGAGCAGCAGTAATAGTGCTCAGGAATCGCATGTGAAAAAGGATGAACCCAAGAAGAAGACCGAATTGGCAGTTGTTTCTGCCGCATCACTATCCTCTTCAGCGTCAACCACCTTCAAT
*******************************************************************************************************************......((((((..(((((((((..........))))).....))))..)))..............................)))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 V118
embryo
 M020
head
 M045
female body
...................................................................................................................GCTAAATGATGCCAGCGAGAGC.................................................................................................................. 22 0 1 2.00 2 1 1 0 0
.GACAGCGGCGTCGGCTGC........................................................................................................................................................................................................................................ 18 0 1 2.00 2 0 0 2 0
...............................................................................................................................................................................TGAACCCAAGAAGAAGACCGAATTG................................................... 25 0 1 2.00 2 0 0 2 0
.............................................................................................................................................................................GATGAACCCAAGAAGAAGACC......................................................... 21 0 1 1.00 1 1 0 0 0
................................................................................................................GTTGCTAAATGATGCCAGCGAGAGCA................................................................................................................. 26 0 1 1.00 1 1 0 0 0
.....GCGGCGTCGGCTGCTGCTGCTG................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0
.............................................................................................................................................GTAATAGTGCTCAGGAATCGCATGTGA................................................................................... 27 0 1 1.00 1 0 0 0 1
................................................................................................................................................................................GAACCCAAGAAGAAGACCGAAT..................................................... 22 0 1 1.00 1 0 0 0 1
.....................................................................................................................................................GCTCAGGAATCGCATGTGAAAAAGGAT........................................................................... 27 0 1 1.00 1 1 0 0 0
...................................................................................................................................GAGAGCAGCAGTAATACTGCT................................................................................................... 21 1 1 1.00 1 0 1 0 0
........................................................................................................................................................CAGGAATCGCATGTGAAAAAG.............................................................................. 21 0 1 1.00 1 1 0 0 0
.......GGCGTCGGCTGCTGCTGCTGAGAGC........................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
.....................................................................................................................................................................................CAAGAAGAAGACGGAATGG................................................... 19 2 4 0.25 1 0 0 0 1
....................................................................................................................................AGAGCAGCAGTGATACTG..................................................................................................... 18 2 6 0.17 1 0 0 1 0
................................................................ATCATCATCATCGGCAGC......................................................................................................................................................................... 18 0 8 0.13 1 0 1 0 0
...............................................................CATCATCATCATCGGCAGC......................................................................................................................................................................... 19 0 8 0.13 1 0 1 0 0
.............................................................................................................................................................................AGTGAACCCAAGAAGAAGCCC......................................................... 21 3 12 0.08 1 0 1 0 0
.........................................................................ATGGGCAGCCGAGAAAAAG............................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0
.............................................................................................................................................................ATCGCGTGTGAAAACGGC............................................................................ 18 3 20 0.05 1 0 1 0 0

Anti-sense strand reads

GCTGTCGCCGCAGCCGACGACGACGACTCTCGTTGTGACTTCGTGAAAGTCACTGGTTAGGTCGTAGTAGTAGTAGCCGTCGGCTCTTCTGCAGGAGCTGTAGCAGCTTTAGCAACGATTTACTACGGTCGCTCTCGTCGTCATTATCACGAGTCCTTAGCGTACACTTTTTCCTACTTGGGTTCTTCTTCTGGCTTAACCGTCAACAAAGACGGCGTAGTGATAGGAGAAGTCGCAGTTGGTGGAAGTTA
***************************************************......((((((..(((((((((..........))))).....))))..)))..............................)))******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 M020
head
.........................................................................TGGCCGCCGCCTCTTCTGCA.............................................................................................................................................................. 20 3 5 0.40 2 1 1 0
..................................................CATTGGGTAGGTCGAAGTAG..................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0
........................................................................GTGGCCGCCGCCTCTTCTGC............................................................................................................................................................... 20 3 9 0.11 1 1 0 0
...................................................................................CTCTTCTGCAGAAGTTGT...................................................................................................................................................... 18 2 11 0.09 1 0 0 1
.........................................................................TGGCCGCCGCCTCTTCTGC............................................................................................................................................................... 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004909:7917421-7917671 + dwi_2808 CGAC--AGCGGCGTCGGCTGCTGC----TGCTGAGAG----------------CAAC-------------------------------------------------AC-------------------------------------------------TGAAGCA-------------------------------------------------------CTTTC-----------------------------------AG---TGACCAATCC-AGCATCATCATCATCGGCAGCC-GAGAAGACGTCCTCGACATCGTCGAAATCGTTG----------------------------------------------CTAAATGATG--------------------------------------------------------------------------CCAGCG------AGAG------------CAGC----------------------AG------------TA-----------------ATAGTGCTCAGGA------------ATC-------------G----CATGTGAAAAAGGATG------------------------------------------------AACCCAAGAAGAA-----------------------------GA---------------------CCGAATTGGCAGTTGTTTCTGC------------------------CG---C------ATCACTA---T-----------------CC------T---CTTC---AG---CGT---CAA---------C-----------------------------------------CACCTTCA-AT
droVir3 scaffold_10324:112235-112491 + CAATGCAGCC------------------GACGGCAGC----------------AGCAG--GATATGGTCAGCAGCAACACATGCAGCAGCAACAGCAACA------GTTGC---AGCTGCAGCCTACAC---------AAC---AG--------C---------------------------------------------------------------AACATC-------------------------------------AAC----AGCATC-AACAA-----------------------------------------------------------------------------------------------------------CAGCAGCAACATC------------------------------------------------------------AA---------------CAACAA------CA-------------ACAA---CAACAACACCAG------CA-----------------G-------------C---AGCAACAGCAGCAACA------------------------------GCTCAT----------------------------------------------------------------------------GCT------G-------------------CAGCAGCAACACGCACATCAGCAACAGCAGCAGCAACAGTTGCTGCC------GC---AGCAGCA---C-----------------GC------A---CATC---AG---CAA------------CATCTA---------------------------------------------CA--A
droMoj3 scaffold_6540:5250412-5250654 + CAGC--AGCAGCATCAGCAGCAGC----AGCAGCAAC----------------AACA-------------------------------------------------ACAGC---AGAAACA---GTAGTAGCAGCGGTAGC---AG-----------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGAG--------------------------------------------------------------------------------------ACTGCAACAACAGCGGAAACAGCAGTAGTAACTGCAGCA------G---------------------------CAGCA------ACAA------------CAGCAGCAACAGCA-------------G---CAA------CA---A-CAAC---AG-------CA-TTAGCAGCAGCAACAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAGCATCAGC------------------------AG---CAGCAGCAGCAACAACAACAA--------------------------CAGC---AA---CAG---CAGCAGCAGCAGCTA---------------------------------------------CA--A
droGri2 scaffold_15203:1310099-1310349 - CAAC--AACAACAGCAACAACAAC----TGCAACAAC----------------AAGA-------------------------------------------------GCAAC---AGCAAGA---GCAACAACAAGAGCAAC---AGCAAGAGCA-----------------------------------------------------------------ACAAC-------------------------------------AAC----AGCGAC-AACAA-----------------------------------------------------------------------------------------------------------CAGCAACAACAAC------------------------AGCAACAACAAC------------A---ACA---GCAAATGCA------GCAA------------ATGC----------------------AG------------CAGCAA------------------------------------------CAA--CTGCATCACCAGCAGCAACTGCAGCAGG------------------------------------------------ACC-----------------------ACCCACGTCAACAGGA-------------------------------GCAACTG------C------------------------AGCAGCAGGA---GCAACA--------------------GAG------ACAACATCAAAAA---CAGCAC------------G---------------------------------------------AACAACT
dp5 XL_group1a:5439622-5439846 + CAAC--AGCAGCAGCAGCAGCATC----AGCCACAAA----------------AGCA-------------------------------------------------GCAGCAGC---AACA---AAAGCAGCAAAAGCAAC---AG-----------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAGCAGGTGCAGCAGCCACAAAATCAGCAGCACCAGCAA-----------------------------------------------------------------------------------------------------------------------------CAG------------------------CACCAG---CAAC-A---GCACC---AG------------CA---AC-AGCACCAG--------------------------------CAACA------------------------------G-----------------------------CACCAGCAACAGCAGC--------------------------------------AGCA-------------------------------ACAGCAG------C------------------------ATGTGCAGCA---GCAACA--------------------AAA------CTATCAGC---AA---CAG---CAG------CATCTG---------------------------------------------CA--G
droPer2 scaffold_5:787608-787836 + CAAC--AGCAGCAGCATTTGCAAC----AGCAGCAGC----------------AACA-------------------------------------------------TGGAC---ATCCGCA---TGGAC---------AAC---AGCAGTCGCA------------------------------------------------------------------------------------------------------------AC----AGCATC-AGCAG-----------------------------------------------------------------------------------------------------------CAGTCGCAGCTCCATGGACAGCAGCAACAC------------------C------------------------AACTGCAGTTGACGCCC------------GCGCAGCAACATCA-------------G---TTG------CA---G-CAAC---AG-------CA-TCCGCATC---AGGC-------------------------------------------------------------------------------------------------------------------------------------G-------------------CCACAGCAGCAGTTGACTTCCG------------------------CG---CAGCATCAGCACTT---C--------------------------CAACATC---AG---CAG---CAG---------C---------------------------------------------ATCA-GA
droAna3 scaffold_13117:4508115-4508367 - CAGC--AGCAGCAACAGCAGCAGC----AGCAGCAAT----------------ACCA-------------------------------------------------TCCGCATC---ACCT---GCATCCGCACAGTCTGC---CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------AGCAGCA------GCAG------------CAGCAGCAACAGCA-------------G---CAACAACAGCA--------------GCAGCAG-------CAAC---T---------------------------------------------GGCCGAGCAGCAGCTTCAC--------------------------------------------------------------------------------------------------------GATCCCGACGACGAGGAGGCGGAACAGGTGCGACT------GC---AGGAGCAGGTG-----------------------------CGTCGCAAA---CAGAAC------------GCCCAGCTGAGCCTGGTGGAGTCCTTCCTCACCACCACCGCCCAGCGCCT-GT
droBip1 scf7180000396730:2752177-2752427 - CACC--GGCGGCGGCAACACCAGC----AACAGCAAC----------------AACA-------------------------------------------------GCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGTGGCAGCAACATTGT------CAAGCGGG-AGTTCT---------------------GTGATGGAAGTTTAAT-GCCC---------------------------------------------------AGTGCTGGGGCCAGTGTTA------A------CAATAATAATAGCACCATCAC---------------CAA------CAACA-------------ACAA---CAACAATAGCAG------TA-----------------G-------------C---AATAACAACAACAACA------------------------------A----------------------------------------------------TAATAAT-----------------------------ACCAAATTGCAGGCATTGATTT--------GCAAAAG------------------------------------CAACACTGCCA-----------------------------------ACAAC---AA---CAA---TAG---------C-----------------------------------------AAC-AGTAACA
droKik1 scf7180000301810:202487-202722 - CAAC--AGCAGCAGCAGCTGCAAC----AGCAACAGC----------------AGAA-------------------------------------------------ACCTC---AGCTGCA---GAAGC---------CGC---AGCAGGAGAA-----------------------------------------------------------------CTCTC-------------------------------------AGC----AGCAGA-ACCCT-----------------------------------------------------------------------------------------------------------CAGCAGCAACACCAAAAACAGCAGCTAAAT------------------C------------------------GAAGGCA------------------------GAAG---GTAA-A---GCAGA---AG------------CA---AC-AGCAACAG-------AA-CCCGC---------------A-------------G----CA------------GGAA-------------------------ATGGA-------------------------------------------------------------G-------------------CAGAAGCAGCAGCAGAACCCGC------------------------AG---CAGCAGCTTCAAAA---ACCT--------------------------CTAC---AG---CAA---CAG---------C-----------------------------------------AAC-AGAAACC
droFic1 scf7180000453929:156081-156363 - CAAC--ATCAACATTATCAACAACA---AGCGGCAAC----------------AGCAATCGCTGGGAT---------------------------------------C------GCCGGCA---TTGCGA---------GC---AG--------CAGTTA-CCG--------------GTGCCAGTGGCAATAAGTCGTCGTCATCCTCCTCCTCATCGTCGTCGTCGTCCGCGACGTCCTACCAGCAACATTACCACCAG---CAACATCTGC-AGCAGCAGCAGCAACAACAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACCGGGAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTGTGCCTTCGGCA-------------------------------GCGACAG------C------------------------AGCAGCAGCA---GCAACA---TCGCAACATCATTCCAGTTCCC----------T---------------------------G-----------------------------AGCAACACTT-CCGCCTCCA-AT
droEle1 scf7180000491023:264857-265110 - CGGC--AGCAGCACGAGCGTGGTC----TACGGCTATCCTGGCTACCGGC-------------------------GACACTCTCAGCATCAACAGCAACAGCAACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCCACCACCACCAGCACCACCACCAC------------------------------------------------------------------------------------------------------ATC------------------------CGCATCTTGTCC------------A---GCA---GCAGCAGCA------GCAG------------CAGC----------------------AG------------CAACAG-----------------TC-G--------------------------CCGCATCGCCAGCAGCAGCAGCAGCAGC------------------------------------------------AACTCTACCAAAA-----------------------------CACAGTGCTGCCG--------CC--------GCCATTG------------------------------------CAGTCCCAGCAGCA---A-----------------------------CTTCATCAG---CAGCAA------------C---------------------------------------------AGCA-AC
droRho1 scf7180000779334:988879-989125 - CAGC--AGCAACACCCACAGAT-A----TGCAGCGATATGTGCAACGGATACAGC-----------------------------------------AGAA------TTATCAGC---ACCT---ACAGC---------AAC---AT--------C---------------------------------------------------------------AGCAG-----------------------------------------CAACAGCAGC-AGCAACAGCAGCAACATC-----------------------------------------------------------------------------------------------AGCAGCAACAGC------------------------AGCAGCAGCAACA---------------GCA------GCAG------------------------CAGCAG---CAAC-A---GCAGC---AG------------CA---AC-AGCAGCA---------------------------------CAACA------------------------------G-----------------------------CAGCAGCCACAGCAGC--------------------------------------AGCA-------------------------------GCAACTG------C------------------------AACTGCAGCA---GCAACA--------------------GCA------ACTGCAAC---AGCAACAG------------CAACTG---------------------------------------------CA--G
droBia1 scf7180000302041:134657-134875 + CAAC--AGCAACAGCAGCAATTGC----AGCAGCAAC----------------AACC-------------------------------------------------GC------AGCCACCGCATAACGA---------GC---AA--------C-----------------------------------------------------------------------------------------------------------------ACCATC-AGCAG------------CATCAGC--------------------------------------------------------------------------------------------------------------------------------A------A------CTGCGACATCTGC------AG---------------CAGCAGCAACAACTGCAACAACAGCA-------------G---CAA------CT---G-CAGC---AG-------CA-GCAGCAAC---TGGT-------------------------------------------------------------------------------------------------------------------------------------G-------------------CAACAGCAACAAGTGCAGCAGC------------------------TC---CAGCAGCAGCAACAACTGCAT--------------------------CAGC---AG---CAG---CAACTGGAGCTCCTG---------------------------------------------CA--G
droTak1 scf7180000415704:185888-186154 + CGAC--AACTG--GCGGCGGCCGT-AACCATGTTGCC----------------CAGT-------------------------------------------------GC------GACGACTT-----------------------------------TGAAGCGTGTGGAGATCACAAAGG---------------------------TCACC-------------------------------------------------GC----AAC-------------GCCGCAGGTCATC-GAGCAGCAGGCAT--CCAGCATCATAAACCCATCAGCAG---------------------------------------------TGGGA--------------------------------------------------------------------------ACAGCA------GGAG------------CAGC----------------------AG------------CC-----------------ACTACGATCTGTG------------ATAGAAAGT------------------------------TG-----------------------------------------------CCAGTGGTCATGCCGCCCA------------------T-A--A-------------------CCACAGTGGTGGTTAACTCCTC------------------------CT---CGGTATCCACAGCC---TCCT--------------------------CCGT---GT---CCA---TAATC----------------------------------------------A-CCACCTCTA-CC
droEug1 scf7180000408176:346995-347248 + CAGC--AACAATATCAGCGATTCC----AACTGCAAT----------------TGCA-------------------------------------------------ATAACTGCAACAATA------TCAACGGTGGCAGCAGCATCAGTAGC--------------------------------------------------------------------------------------------------------------------------------------AGCAACACG----CTGAATACAACTAG-------------------------------------------------------------------------CAACGGCAACACC------------------------AGCA------ACAGCAACAGCAACACCATC------AG---------------CAG---------CA-------------GCAA---CAACAACAACAG------CG-----------------A-------------T---TGCAACTATAGCAACA------------------------------G------------------------TGTGG----------------------------------------------------GCA---GACAGAATTGCAA--------CT--------GTAATTG------------------------------------CAATATCTGCAACA---A-----------------------------TATCAACTG---CAGCAGCAG---------C-----------------------------------------AATTCCCC-TT
dm3 chrX:18772364-18772600 + CGGC--GGCAACATCAACATCGCC----ATCAGCGACTCAGTGAACGGACACAACCA-------------------------------------------------TCATCATC---ACCA---CCATCACCACAGGC-----------------------------------------------------------------------------------------------------------------------------------------------------ATCATCATTTG--CTGGACACGCCGGCTAGCAGCTCTGTGGGATTAGCAA-----------------------------------------------------------------------------------------------------------------------------CAG------------------------CTAC-------------------AGCAGCAGGAG------GA------------------------------GG---AGGGACAGCAGCAGCA------------------------------ATCCCAGTAGCAGCCACACCGGTTA----------------------------------------------------------------------------------------------GCA-ATA------------------------------------CACCAGCAACAGCA---TCGT--------------------------CATC---AG---CAT---CAG---------C--------------------------------------T-GCAGTTGCA-GC
droSim2 2r:21085748-21085979 - CAGC--AGCAGCAGCGGCGGCAGC----AGCAACATC----------------CGCA-------------------------------------------------GCAT----------------------------------------------------------------------------------------------------------------------------------------------------------CAACATCCGC-AGCAGCAGCAGCAAACACAG------CAGGCGAAGAATTCCACC------------------ACATTGGAGCTTCAGCTGCTCGAGATGGTCATAGCCGTTGTTACCAGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGC---------------C-------------G----CACGT-----------AA-------------------------AAGGG--GCAG----------AAGTGGCGGCGGA-----------------------------GT---------------------CGGAGGCGG-AG------------------------------------------GAGTTGCAACC-----------ACGTTACCGTCCACTGGCG---AGTC---GT---CGT------------CATCGT---------------------------------------------CA--T
droSec2 scaffold_8:1075122-1075349 + CGGC--GGCAACATCAACATCGCC----ATCAGCGACTCAGTGAACGGACACAACCA-------------------------------------------------TCATCATC---ACCA---CCATCACCATAGGC-----------------------------------------------------------------------------------------------------------------------------------------------------ATCATCATTTA--CTGGACACGCCGGCCAGCAGCGCTGCGGGATTAGCAA-----------------------------------------------------------------------------------------------------------------------------CAG------------------------C----------------------AGCAGGAGGAG------GA------------------------------GG---AGGGACAGCAGCATCA------------------------------ATCCCAGTGGCAGTAACACCGGTTG----------------------------------------------------------------------------------------------GCA-ATA------------------------------------CACCAGCAACAGCA---TCGT--------------------------CATC---AG---CAT---CAG---------C---------------------------------------------TGCA-GT
droYak3 3R:27540277-27540513 - GTGC--AGCAGCAGCAGCAGGTGC----AACAGCAGC----------------AGCA-------------------------------------------------GCAA----------------------------------------------------------------------------------------------------------------------------------------------------------CAACACCTCC-AGCAGCAGCAGCAACTGCAGGCGTTGAGGGTGCTCCAGGCACAGGCGCAGGCTCAACGGGAA-----------------------------------------------------------------------------------------------------------------------------CGG------------------------GAGCAG---CGGG-A---GCGGG---AG------------C------------------------------------GCGATCAGCAGAAGCT------------------------------GG-----------------------------------------------CCAATGGGAATCCCAGCCAGCCCATCCAG------------------------------------CCCAGGCAGCTGCCTCCGC------------------------CG---CCGCCCTATCA-GA--------------------------------GCAACAACAA---CAGCGA------------G---------------------------------------------ATCA-AG
droEre2 scaffold_4820:1380074-1380292 + GTAC--AGCAGCAGCAGGTGCAAC----AGCAGCAGC----------------AGCA-------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACCACC-AGCAGCAGCAGCAACTTCAGGCCTTGAGGGTGCTCCAGGCACAGGCGCAGGCGCAAAGGGAG---------------------------------------------CGAGA-----------------------------------------------------------------T------------------------------------C----------------------AGCGG---GA--------------------------GCGG-------GAAC---GGGATCAGCAGAAGCT------------------------------GG-----------------------------------------------CCAACGGAAATCCCAGC---------------------------------------------------CGGCAACTGCCTCCGC------------------------CG---CCGCCCTATCA-GA--------------------------------GCAACAACAA---CAGCGA------------G---------------------------------------------ATCA-AG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CGAC--AGCGGCGTCGGCTGCTGC----TGCTGAGAG----------------CAAC-------------------------------------------------AC-------------------------------------------------TGAAGCA-------------------------------------------------------CTTTC-----------------------------------AG---TGACCAATCC-AGCATCATCATCATCGGCAGCC-GAGAAGACGTCCTCGACATCGTCGAAATCGTTG----------------------------------------------CTAAATGATG--------------------------------------------------------------------------CCAGCG------AGAG------------CAGC----------------------AG------------TA-----------------ATAGTGCTCAGGA------------ATC-------------G----CATGTGAAAAAGGATG------------------------------------------------AACCCAAGAAGAA-----------------------------GA---------------------CCGAATTGGCAGTTGTTTCTGC------------------------CG---C------ATCACTA---T-----------------CC------T---CTTC---AG---CGT---CAA---------C-----------------------------------------CACCTTCA-ATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................G----------------------------------------------CTAAATGATG--------------------------------------------------------------------------CCAGCG------AGAG------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200110
.GAC--AGCGGCGTCGGCTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------------------------------------AACCCAAGAAGAA-----------------------------GA---------------------CCGAATTG.............................................................................................................................................................................2512.00220000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATG------------------------------------------------AACCCAAGAAGAA-----------------------------GA---------------------CC...................................................................................................................................................................................2111.00100100
.......................................................................................................................................................................................................................................................................................................................................GTTG----------------------------------------------CTAAATGATG--------------------------------------------------------------------------CCAGCG------AGAG------------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
.......GCGGCGTCGGCTGCTGC----TGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TA-----------------ATAGTGCTCAGGA------------ATC-------------G----CATGTGA...............................................................................................................................................................................................................................................................................................................2711.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------------------AACCCAAGAAGAA-----------------------------GA---------------------CCGAAT...............................................................................................................................................................................2211.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGGA------------ATC-------------G----CATGTGAAAAAGGAT.......................................................................................................................................................................................................................................................................................................2711.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGA------------ATC-------------G----CATGTGAAAAAG..........................................................................................................................................................................................................................................................................................................2111.00100100
.........GGCGTCGGCTGCTGC----TGCTGAGAG----------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
......................................................................................................................................................................................................................................................................................ATCATCATCATCGGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.13100010
.....................................................................................................................................................................................................................................................................................CATCATCATCATCGGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.13100010
droVir3
CAATGCAGCC------------------GACGGCAGC----------------AGCAG--GATATGGTCAGCAGCAACACATGCAGCAGCAACAGCAACA------GTTGC---AGCTGCAGCCTACAC---------AAC---AG--------C---------------------------------------------------------------AACATC-------------------------------------AAC----AGCATC-AACAA-----------------------------------------------------------------------------------------------------------CAGCAGCAACATC------------------------------------------------------------AA---------------CAACAA------CA-------------ACAA---CAACAACACCAG------CA-----------------G-------------C---AGCAACAGCAGCAACA------------------------------GCTCAT----------------------------------------------------------------------------GCT------G-------------------CAGCAGCAACACGCACATCAGCAACAGCAGCAGCAACAGTTGCTGCC------GC---AGCAGCA---C-----------------GC------A---CATC---AG---CAA------------CATCTA---------------------------------------------CA--ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................CATC-------------------------------------AAC----AGCATC-AACAA-----------------------------------------------------------------------------------------------------------CAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................CAC---------AAC---AG--------C---------------------------------------------------------------AACATC-------------------------------------AAC----A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATC------------------------------------------------------------AA---------------CAACAA------CA-------------ACAA---CAACAACACC...............................................................................................................................................................................................................................................................................................................................................................................................2750.201001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CA-----------------G-------------C---AGCAACAGCAGCAACA------------------------------....................................................................................................................................................................................................................................................................................................21200.204004000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CA-----------------G-------------C---AGCAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................19200.153000000000000000000000000000003000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAACAACACCAG------CA-----------------G-------------C---AGC...............................................................................................................................................................................................................................................................................................................................................2280.131000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---CAACAACACCAG------CA-----------------G-------------C---A.................................................................................................................................................................................................................................................................................................................................................2190.111000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TC------------------------------------------------------------AA---------------CAACAA------CA-------------ACAA---CAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................24200.102002000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------CA-------------ACAA---CAACAACACCAG------CA-----------------....................................................................................................................................................................................................................................................................................................................................................................23100.101001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CAA-----------------------------------------------------------------------------------------------------------CAGCAGCAACATC------------------------------------------------------------AA---------------CAA........................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ACAA-----------------------------------------------------------------------------------------------------------CAGCAGCAACATC------------------------------------------------------------AA---------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------CA-------------ACAA---CAACAACACCAG------CA-----------------....................................................................................................................................................................................................................................................................................................................................................................22110.091001000000000000000000000000000000000000000000000000000000000000
...............................................................................................CAACA------GTTGC---AGCTGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.081001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAACAACACCAG------CA-----------------G-------------C---A.................................................................................................................................................................................................................................................................................................................................................20140.071000000000000000000000000000010000000000000000000000000000000000
..................................................................................GCAGCAGCAACAGCAACA------GT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.061001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAG------CA-----------------G-------------C---AGCAACAGCAGC......................................................................................................................................................................................................................................................................................................................................22170.061000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAACAGCAGCAGCAAC................................................................................................................................................21180.061000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CA-----------------G-------------C---AGCAACAGCAGCAACA------------------------------....................................................................................................................................................................................................................................................................................................22200.051000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAACA...............................................................................................................................................18200.051000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACAGTT............................................................................................................................................20200.051000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ATC------------------------------------------------------------AA---------------CAACAA------CA-------------ACAA---CAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------CAACAA------CA-------------ACAA---CAACAACACC...............................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAG------CA-----------------G-------------C---AGCAACAGC.........................................................................................................................................................................................................................................................................................................................................19200.051000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------------------------AA---------------CAACAA------CA-------------ACAA---CAACAACACC...............................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------CA-------------ACAA---CAACAACACC...............................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAACAGCAGCAGCA..................................................................................................................................................19200.051000000000000000000000000000000000000100000000000000000000000000
....................................................................................AGCAGCAACAGCAACA------GT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CA-----------------G-------------C---AGCAACAGCAGCAAC...................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGTTGCTGCC------................................................................................................................................17200.051000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................................AAC---AG--------C---------------------------------------------------------------AACATC-------------------------------------AAC----AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGT.............................................................................................................................................18200.051000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AACATC------------------------------------------------------------AA---------------CAACAA------CA-------------ACAA---CAACAA...................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACAGT.............................................................................................................................................19200.051000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TC------------------------------------------------------------AA---------------CAACAA------CA-------------ACAA---CAAC.....................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATC------------------------------------------------------------AA---------------CAACAA------CA-------------A...............................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TC------------------------------------------------------------AA---------------CAACAA------CA-------------ACAA---CAACA....................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACACCAG------CA-----------------G-------------C---AGC...............................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000100000000000000000000000000
droMoj3
CAGC--AGCAGCATCAGCAGCAGC----AGCAGCAAC----------------AACA-------------------------------------------------ACAGC---AGAAACA---GTAGTAGCAGCGGTAGC---AG-----------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGAG--------------------------------------------------------------------------------------ACTGCAACAACAGCGGAAACAGCAGTAGTAACTGCAGCA------G---------------------------CAGCA------ACAA------------CAGCAGCAACAGCA-------------G---CAA------CA---A-CAAC---AG-------CA-TTAGCAGCAGCAACAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAGCATCAGC------------------------AG---CAGCAGCAGCAACAACAACAA--------------------------CAGC---AA---CAG---CAGCAGCAGCAGCTA---------------------------------------------CA--ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA-------------G---CAA------CA---A-CAAC---AG-------CA-T............................................................................................................................................................................................................................................................................................................................................................2240.251100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCATCAGC------------------------AG---CAGCAGC...........................................................................................................................2490.111000001
..................................................................................................................................GCAGCGGTAGC---AG-----------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101000010
..................................................................................................................................GCAGCGGTAGC---AG-----------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.091000010
....................................................................................................................................AGCGGTAGC---AG-----------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.071000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------G---------------------------CAGCA------ACAA------------CAGCAGCAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.......GCAGCATCAGCAGCAGC----AGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.AGC--AGCAGCATCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGCA------G---------------------------CAGCA------ACAA------------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA-------------G---CAA------CA---A-C...............................................................................................................................................................................................................................................................................................................................................................................18200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAGC.....................................................................................................................................................................26200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGC------------------------AG---CAGCAGCAGCAAC.....................................................................................................................21200.051100000
.......GCAGCATCAGCAGCAGC----AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAA--------------------------CAGC---AA---CAG---CAGCAGCAGCA......................................................27200.051000010
..............................CAGCAAC----------------AACA-------------------------------------------------ACAGC---AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCATCAGC------------------------AG---C.................................................................................................................................18200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCA-------------G---CAA------CA---A-C...............................................................................................................................................................................................................................................................................................................................................................................19200.051000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCA-------------G---CAA------CA---A-C...............................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAA--------------------------CAGC---AA---CAG---CA...............................................................20200.051000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------ACAA------------CAGCAGCAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAGC.....................................................................................................................................................................22200.051000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------G---------------------------CAGCA------ACAA------------CAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAA--------------------------CAGC---A...........................................................................22200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA--------------------------CAGC---AA---CAG---CAGCAGCA.........................................................21200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCA..........................................................................................................................................................................21200.051000010
.......GCAGCATCAGCAGCAGC----AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAA--------------------------CAGC---AA---CAG---CAGCA............................................................26200.051000010
droGri2
CAAC--AACAACAGCAACAACAAC----TGCAACAAC----------------AAGA-------------------------------------------------GCAAC---AGCAAGA---GCAACAACAAGAGCAAC---AGCAAGAGCA-----------------------------------------------------------------ACAAC-------------------------------------AAC----AGCGAC-AACAA-----------------------------------------------------------------------------------------------------------CAGCAACAACAAC------------------------AGCAACAACAAC------------A---ACA---GCAAATGCA------GCAA------------ATGC----------------------AG------------CAGCAA------------------------------------------CAA--CTGCATCACCAGCAGCAACTGCAGCAGG------------------------------------------------ACC-----------------------ACCCACGTCAACAGGA-------------------------------GCAACTG------C------------------------AGCAGCAGGA---GCAACA--------------------GAG------ACAACATCAAAAA---CAGCAC------------G---------------------------------------------AACAACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................GCA-----------------------------------------------------------------ACAAC-------------------------------------AAC----AGCGAC-AACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.08110
..............................................................................................................................................................................................................................................................................CGAC-AACAA-----------------------------------------------------------------------------------------------------------CAGCAACAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05110
dp5
CAAC--AGCAGCAGCAGCAGCATC----AGCCACAAA----------------AGCA-------------------------------------------------GCAGCAGC---AACA---AAAGCAGCAAAAGCAAC---AG-----------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAGCAGGTGCAGCAGCCACAAAATCAGCAGCACCAGCAA-----------------------------------------------------------------------------------------------------------------------------CAG------------------------CACCAG---CAAC-A---GCACC---AG------------CA---AC-AGCACCAG--------------------------------CAACA------------------------------G-----------------------------CACCAGCAACAGCAGC--------------------------------------AGCA-------------------------------ACAGCAG------C------------------------ATGTGCAGCA---GCAACA--------------------AAA------CTATCAGC---AA---CAG---CAG------CATCTG---------------------------------------------CA--GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................AGCAGGTGCAGCAGCCACAAAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------C------------------------ATGTGCAGCA---GCAACA--------------------AAA------CTAT...................................................................................2711.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------------------G-----------------------------CACCAGCAACAGCAGC--------------------------------------AGCA-------------------------------ACA..........................................................................................................................................................................2920.5010001000000
......................................................................................................................................AAGCAAC---AG-----------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.3310100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------------------G-----------------------------CACCAGCAACAGCAGC--------------------------------------AG..............................................................................................................................................................................................................2430.3310100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAACAGCAGC--------------------------------------AGC.............................................................................................................................................................................................................19200.0510000100000
.AAC--AGCAGCAGCAGCAGCATC----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGC--------------------------------------AGCA-------------------------------ACAGCAG------C------------------------.......................................................................................................................................20200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGC--------------------------------------AGCA-------------------------------ACAGCAG------C------------------------.......................................................................................................................................24200.0510000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGC--------------------------------------AGCA-------------------------------ACAGCAG------C------------------------A......................................................................................................................................22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGC--------------------------------------AGCA-------------------------------ACAGCAG------C------------------------A......................................................................................................................................26200.0510001000000
droPer2
CAAC--AGCAGCAGCATTTGCAAC----AGCAGCAGC----------------AACA-------------------------------------------------TGGAC---ATCCGCA---TGGAC---------AAC---AGCAGTCGCA------------------------------------------------------------------------------------------------------------AC----AGCATC-AGCAG-----------------------------------------------------------------------------------------------------------CAGTCGCAGCTCCATGGACAGCAGCAACAC------------------C------------------------AACTGCAGTTGACGCCC------------GCGCAGCAACATCA-------------G---TTG------CA---G-CAAC---AG-------CA-TCCGCATC---AGGC-------------------------------------------------------------------------------------------------------------------------------------G-------------------CCACAGCAGCAGTTGACTTCCG------------------------CG---CAGCATCAGCACTT---C--------------------------CAACATC---AG---CAG---CAG---------C---------------------------------------------ATCA-GASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................GCAAC----AGCAGCAGC----------------AACA-------------------------------------------------TGGAC---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.004400000
..................................................................................................................ATCCGCA---TGGAC---------AAC---AGCAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTCGCAGCTCCATGGACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
...............................................................................................................................................................................................................................................................................................................................................................................................................CATGGACAGCAGCAACAC------------------C------------------------AACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
....................CAAC----AGCAGCAGC----------------AACA-------------------------------------------------TGGAC---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................GCAG-----------------------------------------------------------------------------------------------------------CAGTCGCAGCTCCATGGACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
......................AC----AGCAGCAGC----------------AACA-------------------------------------------------TGGAC---ATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...........CAGCATTTGCAAC----AGCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
.................................................................................................................................................................................................................................................................................C-AGCAG-----------------------------------------------------------------------------------------------------------CAGTCGCAGCTCCATGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.......................................................CA-------------------------------------------------TGGAC---ATCCGCA---TGGAC---------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
................................................................................................................................C---------AAC---AGCAGTCGCA------------------------------------------------------------------------------------------------------------AC----AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...................GCAAC----AGCAGCAGC----------------AACA-------------------------------------------------TGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
..................................................................................................................ATCCGCA---TGGAC---------AAC---AGCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droAna3
CAGC--AGCAGCAACAGCAGCAGC----AGCAGCAAT----------------ACCA-------------------------------------------------TCCGCATC---ACCT---GCATCCGCACAGTCTGC---CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------AGCAGCA------GCAG------------CAGCAGCAACAGCA-------------G---CAACAACAGCA--------------GCAGCAG-------CAAC---T---------------------------------------------GGCCGAGCAGCAGCTTCAC--------------------------------------------------------------------------------------------------------GATCCCGACGACGAGGAGGCGGAACAGGTGCGACT------GC---AGGAGCAGGTG-----------------------------CGTCGCAAA---CAGAAC------------GCCCAGCTGAGCCTGGTGGAGTCCTTCCTCACCACCACCGCCCAGCGCCT-GTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCA-------------G---CAACAACAGCA--------------GCAGC..................................................................................................................................................................................................................................................................................................................................................................28100.101000001
..................................................................................................................................................CAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------AGCAGCA------GCAG------------CAGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................25140.071010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA-------------G---CAACAACAGCA--------------GCAGC..................................................................................................................................................................................................................................................................................................................................................................25150.071010000
...................................................................................................................................................AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------AGCAGCA------GCAG------------CAGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................24190.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GCAG------------CAGCAGCAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------GCAG------------CAGCAGCAACAGCA-------------G---CA..............................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
..GC--AGCAGCAACAGCAGCAGC----A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA-------------G---CAACAACAGC......................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
..................................................................................................................................................CAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------AGCAGCA------GCAG------------CAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA--------------GCAGCAG-------CAAC---T---------------------------------------------GGG.................................................................................................................................................................................................................................................................................................19200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCA-------------G---CAACAACAGCA--------------GCA....................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.......GCAGCAACAGCAGCAGC----AGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCA--------------GCAGCAG-------C........................................................................................................................................................................................................................................................................................................................................................19200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------CAGCAGCAACAGCA-------------G---C...............................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
......AGCAGCAACAGCAGCAGC----AGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000001
..................................................................................................................................................CAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------AGCAGCA------GCAG------------CAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------G---CAACAACAGCA--------------GCAGC..................................................................................................................................................................................................................................................................................................................................................................19200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAACAACAGCA--------------GCAGCAG-------CA.......................................................................................................................................................................................................................................................................................................................................................21200.051000001
droBip1
CACC--GGCGGCGGCAACACCAGC----AACAGCAAC----------------AACA-------------------------------------------------GCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGTGGCAGCAACATTGT------CAAGCGGG-AGTTCT---------------------GTGATGGAAGTTTAAT-GCCC---------------------------------------------------AGTGCTGGGGCCAGTGTTA------A------CAATAATAATAGCACCATCAC---------------CAA------CAACA-------------ACAA---CAACAATAGCAG------TA-----------------G-------------C---AATAACAACAACAACA------------------------------A----------------------------------------------------TAATAAT-----------------------------ACCAAATTGCAGGCATTGATTT--------GCAAAAG------------------------------------CAACACTGCCA-----------------------------------ACAAC---AA---CAA---TAG---------C-----------------------------------------AAC-AGTAACASizeHit CountTotal NormTotal
No Reads
droKik1
CAAC--AGCAGCAGCAGCTGCAAC----AGCAACAGC----------------AGAA-------------------------------------------------ACCTC---AGCTGCA---GAAGC---------CGC---AGCAGGAGAA-----------------------------------------------------------------CTCTC-------------------------------------AGC----AGCAGA-ACCCT-----------------------------------------------------------------------------------------------------------CAGCAGCAACACCAAAAACAGCAGCTAAAT------------------C------------------------GAAGGCA------------------------GAAG---GTAA-A---GCAGA---AG------------CA---AC-AGCAACAG-------AA-CCCGC---------------A-------------G----CA------------GGAA-------------------------ATGGA-------------------------------------------------------------G-------------------CAGAAGCAGCAGCAGAACCCGC------------------------AG---CAGCAGCTTCAAAA---ACCT--------------------------CTAC---AG---CAA---CAG---------C-----------------------------------------AAC-AGAAACCSizeHit CountTotal NormTotal
No Reads
droFic1
CAAC--ATCAACATTATCAACAACA---AGCGGCAAC----------------AGCAATCGCTGGGAT---------------------------------------C------GCCGGCA---TTGCGA---------GC---AG--------CAGTTA-CCG--------------GTGCCAGTGGCAATAAGTCGTCGTCATCCTCCTCCTCATCGTCGTCGTCGTCCGCGACGTCCTACCAGCAACATTACCACCAG---CAACATCTGC-AGCAGCAGCAGCAACAACAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACCGGGAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTGTGCCTTCGGCA-------------------------------GCGACAG------C------------------------AGCAGCAGCA---GCAACA---TCGCAACATCATTCCAGTTCCC----------T---------------------------G-----------------------------AGCAACACTT-CCGCCTCCA-ATSizeHit CountTotal NormTotal
No Reads
droEle1
CGGC--AGCAGCACGAGCGTGGTC----TACGGCTATCCTGGCTACCGGC-------------------------GACACTCTCAGCATCAACAGCAACAGCAACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCCACCACCACCAGCACCACCACCAC------------------------------------------------------------------------------------------------------ATC------------------------CGCATCTTGTCC------------A---GCA---GCAGCAGCA------GCAG------------CAGC----------------------AG------------CAACAG-----------------TC-G--------------------------CCGCATCGCCAGCAGCAGCAGCAGCAGC------------------------------------------------AACTCTACCAAAA-----------------------------CACAGTGCTGCCG--------CC--------GCCATTG------------------------------------CAGTCCCAGCAGCA---A-----------------------------CTTCATCAG---CAGCAA------------C---------------------------------------------AGCA-ACSizeHit CountTotal NormTotal
No Reads
droRho1
CAGC--AGCAACACCCACAGAT-A----TGCAGCGATATGTGCAACGGATACAGC-----------------------------------------AGAA------TTATCAGC---ACCT---ACAGC---------AAC---AT--------C---------------------------------------------------------------AGCAG-----------------------------------------CAACAGCAGC-AGCAACAGCAGCAACATC-----------------------------------------------------------------------------------------------AGCAGCAACAGC------------------------AGCAGCAGCAACA---------------GCA------GCAG------------------------CAGCAG---CAAC-A---GCAGC---AG------------CA---AC-AGCAGCA---------------------------------CAACA------------------------------G-----------------------------CAGCAGCCACAGCAGC--------------------------------------AGCA-------------------------------GCAACTG------C------------------------AACTGCAGCA---GCAACA--------------------GCA------ACTGCAAC---AGCAACAG------------CAACTG---------------------------------------------CA--GSizeHit CountTotal NormTotal
No Reads
droBia1
CAAC--AGCAACAGCAGCAATTGC----AGCAGCAAC----------------AACC-------------------------------------------------GC------AGCCACCGCATAACGA---------GC---AA--------C-----------------------------------------------------------------------------------------------------------------ACCATC-AGCAG------------CATCAGC--------------------------------------------------------------------------------------------------------------------------------A------A------CTGCGACATCTGC------AG---------------CAGCAGCAACAACTGCAACAACAGCA-------------G---CAA------CT---G-CAGC---AG-------CA-GCAGCAAC---TGGT-------------------------------------------------------------------------------------------------------------------------------------G-------------------CAACAGCAACAAGTGCAGCAGC------------------------TC---CAGCAGCAGCAACAACTGCAT--------------------------CAGC---AG---CAG---CAACTGGAGCTCCTG---------------------------------------------CA--GSizeHit CountTotal NormTotal
No Reads
droTak1
CGAC--AACTG--GCGGCGGCCGT-AACCATGTTGCC----------------CAGT-------------------------------------------------GC------GACGACTT-----------------------------------TGAAGCGTGTGGAGATCACAAAGG---------------------------TCACC-------------------------------------------------GC----AAC-------------GCCGCAGGTCATC-GAGCAGCAGGCAT--CCAGCATCATAAACCCATCAGCAG---------------------------------------------TGGGA--------------------------------------------------------------------------ACAGCA------GGAG------------CAGC----------------------AG------------CC-----------------ACTACGATCTGTG------------ATAGAAAGT------------------------------TG-----------------------------------------------CCAGTGGTCATGCCGCCCA------------------T-A--A-------------------CCACAGTGGTGGTTAACTCCTC------------------------CT---CGGTATCCACAGCC---TCCT--------------------------CCGT---GT---CCA---TAATC----------------------------------------------A-CCACCTCTA-CCSizeHit CountTotal NormTotal
No Reads
droEug1
CAGC--AACAATATCAGCGATTCC----AACTGCAAT----------------TGCA-------------------------------------------------ATAACTGCAACAATA------TCAACGGTGGCAGCAGCATCAGTAGC--------------------------------------------------------------------------------------------------------------------------------------AGCAACACG----CTGAATACAACTAG-------------------------------------------------------------------------CAACGGCAACACC------------------------AGCA------ACAGCAACAGCAACACCATC------AG---------------CAG---------CA-------------GCAA---CAACAACAACAG------CG-----------------A-------------T---TGCAACTATAGCAACA------------------------------G------------------------TGTGG----------------------------------------------------GCA---GACAGAATTGCAA--------CT--------GTAATTG------------------------------------CAATATCTGCAACA---A-----------------------------TATCAACTG---CAGCAGCAG---------C-----------------------------------------AATTCCCC-TTSizeHit CountTotal NormTotal
No Reads
dm3
CGGC--GGCAACATCAACATCGCC----ATCAGCGACTCAGTGAACGGACACAACCA-------------------------------------------------TCATCATC---ACCA---CCATCACCACAGGC-----------------------------------------------------------------------------------------------------------------------------------------------------ATCATCATTTG--CTGGACACGCCGGCTAGCAGCTCTGTGGGATTAGCAA-----------------------------------------------------------------------------------------------------------------------------CAG------------------------CTAC-------------------AGCAGCAGGAG------GA------------------------------GG---AGGGACAGCAGCAGCA------------------------------ATCCCAGTAGCAGCCACACCGGTTA----------------------------------------------------------------------------------------------GCA-ATA------------------------------------CACCAGCAACAGCA---TCGT--------------------------CATC---AG---CAT---CAG---------C--------------------------------------T-GCAGTTGCA-GCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------------------CACCAGCAACAGCA---TCGT--------------------------CATC---AG---C......................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA---TCGT--------------------------CATC---AG---C......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCAACATCGCC----ATCAGCGACTCAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---AGGGACAGCAGCAGCA------------------------------ATCCCAGT............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TAGCAGCTCTGTGGGATTAGCAA-----------------------------------------------------------------------------------------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------CTAC-------------------AGCAGCAGGAG------GA------------------------------GG---AGGG..............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................GACACAACCA-------------------------------------------------TCATCATC---ACCA---CC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........CATCAACATCGCC----ATCAGCGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT--------------------------CATC---AG---CAT---CAG---------C--------------------------------------T-GCAGTTGCA-GC2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CGCCGGCTAGCAGCTCTGTGGGATTAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGAG------GA------------------------------GG---AGGGA.............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................ATTAGCAA-----------------------------------------------------------------------------------------------------------------------------CAG------------------------CTAC-------------------AGCA....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---TCGT--------------------------CATC---AG---CAT---CAG---------C--------------------------------------T-GCAG........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACGCCGGCTAGCAGCTCTGTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CCA-------------------------------------------------TCATCATC---ACCA---CCATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................A-------------------------------------------------TCATCATC---ACCA---CCATCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAGC--AGCAGCAGCGGCGGCAGC----AGCAACATC----------------CGCA-------------------------------------------------GCAT----------------------------------------------------------------------------------------------------------------------------------------------------------CAACATCCGC-AGCAGCAGCAGCAAACACAG------CAGGCGAAGAATTCCACC------------------ACATTGGAGCTTCAGCTGCTCGAGATGGTCATAGCCGTTGTTACCAGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGC---------------C-------------G----CACGT-----------AA-------------------------AAGGG--GCAG----------AAGTGGCGGCGGA-----------------------------GT---------------------CGGAGGCGG-AG------------------------------------------GAGTTGCAACC-----------ACGTTACCGTCCACTGGCG---AGTC---GT---CGT------------CATCGT---------------------------------------------CA--TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................C-AGCAGCAGCAGCAAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.00200000200000000000
droSec2
CGGC--GGCAACATCAACATCGCC----ATCAGCGACTCAGTGAACGGACACAACCA-------------------------------------------------TCATCATC---ACCA---CCATCACCATAGGC-----------------------------------------------------------------------------------------------------------------------------------------------------ATCATCATTTA--CTGGACACGCCGGCCAGCAGCGCTGCGGGATTAGCAA-----------------------------------------------------------------------------------------------------------------------------CAG------------------------C----------------------AGCAGGAGGAG------GA------------------------------GG---AGGGACAGCAGCATCA------------------------------ATCCCAGTGGCAGTAACACCGGTTG----------------------------------------------------------------------------------------------GCA-ATA------------------------------------CACCAGCAACAGCA---TCGT--------------------------CATC---AG---CAT---CAG---------C---------------------------------------------TGCA-GTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGGAG------GA------------------------------GG---AGGGACAGC.........................................................................................................................................................................................................................................................................................................................................2311.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCA------------------------------ATCCCAGTGGC.........................................................................................................................................................................................................................................................................................2111.0011000
............................................................................................................................................................................................................................................................................................................................GCAGCGCTGCGGGATTAGCAA-----------------------------------------------------------------------------------------------------------------------------CAG------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---AGGGACAGCAGCATCA------------------------------....................................................................................................................................................................................................................................................................................................1811.0010010
......GGCAACATCAACATCGCC----ATCAGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
............................................................................................................................................................................................................................................................................................................................................AGCAA-----------------------------------------------------------------------------------------------------------------------------CAG------------------------C----------------------AGCAGGAGGAG------GA------------------------------G......................................................................................................................................................................................................................................................................................................................................................2320.5010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------C----------------------AGCAGGAGGAG------GA------------------------------GG---A.................................................................................................................................................................................................................................................................................................................................................1860.1711000
droYak3
GTGC--AGCAGCAGCAGCAGGTGC----AACAGCAGC----------------AGCA-------------------------------------------------GCAA----------------------------------------------------------------------------------------------------------------------------------------------------------CAACACCTCC-AGCAGCAGCAGCAACTGCAGGCGTTGAGGGTGCTCCAGGCACAGGCGCAGGCTCAACGGGAA-----------------------------------------------------------------------------------------------------------------------------CGG------------------------GAGCAG---CGGG-A---GCGGG---AG------------C------------------------------------GCGATCAGCAGAAGCT------------------------------GG-----------------------------------------------CCAATGGGAATCCCAGCCAGCCCATCCAG------------------------------------CCCAGGCAGCTGCCTCCGC------------------------CG---CCGCCCTATCA-GA--------------------------------GCAACAACAA---CAGCGA------------G---------------------------------------------ATCA-AGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................CTGCAGGCGTTGAGGGTGCTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.........................................................................................................................................................................................................................................................................................................................GCACAGGCGCAGGCTCAACGGGAA-----------------------------------------------------------------------------------------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..............................................................................................................................................................................................................................................................................................CAACTGCAGGCGTTGAGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................................................................................................................................................................................................................................................................................................CTGCAGGCGTTGAGGGTGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEre2
GTAC--AGCAGCAGCAGGTGCAAC----AGCAGCAGC----------------AGCA-------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACCACC-AGCAGCAGCAGCAACTTCAGGCCTTGAGGGTGCTCCAGGCACAGGCGCAGGCGCAAAGGGAG---------------------------------------------CGAGA-----------------------------------------------------------------T------------------------------------C----------------------AGCGG---GA--------------------------GCGG-------GAAC---GGGATCAGCAGAAGCT------------------------------GG-----------------------------------------------CCAACGGAAATCCCAGC---------------------------------------------------CGGCAACTGCCTCCGC------------------------CG---CCGCCCTATCA-GA--------------------------------GCAACAACAA---CAGCGA------------G---------------------------------------------ATCA-AGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CCGCCCTATCA-GA--------------------------------GCAACAACA...........................................................................2311.0010001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGAAATCCCAGC---------------------------------------------------CGGCAACTGC.....................................................................................................................................................................2611.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------GCGG-------GAAC---GGGATCAGC.........................................................................................................................................................................................................................................................................................................................................1811.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................GAGA-----------------------------------------------------------------T------------------------------------C----------------------AGCGG---GA--------------------------GCGG-------GAAC---GGGATC............................................................................................................................................................................................................................................................................................................................................2711.0011000000
..........................................................................................................................................................................................................................................................................................................................CACAGGCGCAGGCGCAAAGGGAG---------------------------------------------CGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGG---GA--------------------------GCGG-------GAAC---GGGAT.............................................................................................................................................................................................................................................................................................................................................1911.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---GGGATCAGCAGAAGCT------------------------------GG-----------------------------------------------CCAACG.............................................................................................................................................................................................................................................2711.0010100000
...................................................................................................................................................................................................................................................................................................................CTCCAGGCACAGGCGCAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
........................................................................................................................................................................................................................................................................................................................GGCACAGGCGCAGGCGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310100000
.............................GCAGCAGC----------------AGCA-------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100
......................AC----AGCAGCAGC----------------AGCA-------------------------------------------------G-------------------------------------------------------------------------------------------------------------------------------------------------------------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510100000

Generated: 05/18/2015 at 05:20 AM