ID:

dwi_2807

 Coordinate:

scf2_1100000004909:7915406-7915556 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.1 -4.0 -3.9

Flybase annnotation

CDS [Dwil\GK25833-cds]; exon [dwil_GLEANR_9967:7]; intron [Dwil\GK25833-in]

Repeatable elements

NameClassFamilyStrand
ROO_I-intLTRPao+
TART_DVLINEJockey+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTATCCGCTGCTGCTGCTATTTGCGATTGCGTTTGGCATTAAAAAATGACAAAAAAAAAAAAAAATACCAAAAATATTTCAATACCCAAACCAACAACAATAAATACTTGAGTGCAGAAGGGGCACAGCAACAACAACAATAATAATAACAGCGGCAATAACAACAACAATAGCAACACCAATATGAGCAACAACAATCAGACATCAAATTCGGGCAGCAACAGCAACGGAGAGGGAAACGGAAACGGCAA
**************************************************.............................................................((((.......))))...........................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V119
head
 M020
head
 V118
embryo
........................................................................................................AACTTGAGTGCAGAAGAGG................................................................................................................................ 19 2 1 109.00 109 83 25 1 0 0
.........................................................................................................ACTTGAGTGCAGAAGAGG................................................................................................................................ 18 1 1 87.00 87 82 4 1 0 0
........................................................................................................GACTTGAGTGCAGAAGAGG................................................................................................................................ 19 2 2 79.50 159 103 54 2 0 0
.......................................................................................................AAACTTGAGTGCAGAAGAGG................................................................................................................................ 20 2 1 42.00 42 29 12 1 0 0
.........................................................................................................ACTTGAGTGCAGAAGAGGA............................................................................................................................... 19 2 4 37.75 151 100 40 11 0 0
..........................................................................................................CTTGAGTGCAGAAGAGGA............................................................................................................................... 18 2 7 31.29 219 189 13 15 2 0
........................................................................................................AACTTGAGTGCAGAAGAG................................................................................................................................. 18 2 7 29.57 207 190 7 10 0 0
........................................................................................................GACTTGAGTGCAGAAGAG................................................................................................................................. 18 2 10 17.70 177 157 16 4 0 0
.......................................................................................................AAACTTGAGTGCAGAAGAG................................................................................................................................. 19 2 4 17.00 68 38 27 3 0 0
.......................................................................................................AGACTTGAGTGCAGAAGAGG................................................................................................................................ 20 2 1 15.00 15 8 7 0 0 0
........................................................................................................GACTTGAGTGCAGAAGAGGA............................................................................................................................... 20 3 17 14.71 250 136 106 8 0 0
......................................................................................................GAAACTTGAGTGCAGAAGAGG................................................................................................................................ 21 3 3 13.00 39 30 9 0 0 0
.........................................................................................................ACTTGAGTGCAGAAGAGGAC.............................................................................................................................. 20 3 20 11.90 238 133 60 6 39 0
.......................................................................................................AAACTTGAGTGCAGAAGAGGA............................................................................................................................... 21 3 6 10.50 63 39 22 1 0 1
........................................................................................................AACTTGAGTGCAGAAGAGGA............................................................................................................................... 20 3 14 9.36 131 78 47 6 0 0
......................................................................................................GAGACTTGAGTGCAGAAGAGG................................................................................................................................ 21 3 2 7.00 14 10 4 0 0 0
.......................................................................................................AGACTTGAGTGCAGAAGAG................................................................................................................................. 19 2 6 5.67 34 18 15 1 0 0
.........................................................................................................ACTTGAGTGCAGAAGAGGGC.............................................................................................................................. 20 3 4 5.50 22 9 12 1 0 0
......................................................................................................GAAACTTGAGTGCAGAAGAG................................................................................................................................. 20 3 17 4.41 75 44 31 0 0 0
.......................................................................................................AGACTTGAGTGCAGAAGAGGA............................................................................................................................... 21 3 7 3.86 27 14 12 1 0 0
..........................................................................................................CTTGAGTGCAGAAGAGGGC.............................................................................................................................. 19 3 20 3.60 72 42 22 5 3 0
......................................................................................................GAGACTTGAGTGCAGAAGAG................................................................................................................................. 20 3 9 2.78 25 18 7 0 0 0
.......................................................................................................AAACTTGAGTGCAGAAGA.................................................................................................................................. 18 2 14 2.71 38 35 0 3 0 0
.........................................................................................................ACTTGAGTGCAGAAGAGGG............................................................................................................................... 19 2 2 2.50 5 3 2 0 0 0
......................................................................................................GAAACTTGAGTGCAGAAG................................................................................................................................... 18 2 9 2.33 21 21 0 0 0 0
......................................................................................................GAGACTTGAGTGCAGAAG................................................................................................................................... 18 2 6 2.17 13 13 0 0 0 0
.......................................................................................................AGACTTGAGTGCAGAAGA.................................................................................................................................. 18 2 9 2.00 18 18 0 0 0 0
......................................................................................................GAGACTTGAGTGCAGAAGA.................................................................................................................................. 19 3 20 1.90 38 30 6 2 0 0
......................................................................................................AAAACTTGAGTGCAGAAGAG................................................................................................................................. 20 2 2 1.00 2 1 1 0 0 0
.................................................................................................................................................ATAACAGCGGCAATAACAA....................................................................................... 19 0 1 1.00 1 0 1 0 0 0
.......................................................................................................GTACTTGAGTGCAGAAGAGG................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0
........................................................................................................GACTTGAGTGCAGAAGGGACA.............................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0
.........................................................................................................ACTTGAGTGCAGAAGAGGCC.............................................................................................................................. 20 2 1 1.00 1 0 0 1 0 0
.........................................................................................................ACTTGAGTGCAGAAGGGA................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0
........................................................................................................TACTTGAGTGCAGAAGAGG................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0
.........................................................................................................ACTTGAGTGCAGAAGAGGC............................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0
..........................................................................................................CTTGAGTGCAGAAAGGGCA.............................................................................................................................. 19 1 1 1.00 1 0 1 0 0 0
..........................................................................................................CTTGAGTGCAGAAGAGGG............................................................................................................................... 18 2 5 1.00 5 5 0 0 0 0
.........................................................................................................ACTTGAGTGCAGTAGGGG................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0
..........................................................................................................CTTGAGTGCAGAAGGGACA.............................................................................................................................. 19 1 1 1.00 1 0 1 0 0 0
.....................................................................................................GGAAACTTGAGTGCAGAAG................................................................................................................................... 19 3 20 0.60 12 12 0 0 0 0
........................................................................................................TACTTGAGTGCAGAAGAG................................................................................................................................. 18 1 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................................................................GGAGAGGGAGCCTGAAACGGC.. 21 3 2 0.50 1 0 1 0 0 0
..........................................................................................................CTTGAGTGCAGAAGAGGAG.............................................................................................................................. 19 3 20 0.50 10 4 6 0 0 0
........................................................................................................TACTTGAGTGCAGAAGAGGA............................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
..........................................................................................................................................GATAATAATAACAGCGTCAATAG.......................................................................................... 23 3 2 0.50 1 0 1 0 0 0
......................................................................................................GAAACTTGAGTGCAGAAGCGG................................................................................................................................ 21 3 2 0.50 1 0 1 0 0 0
.......................................................................................................ATACTAGAGTGCAGTAGGGG................................................................................................................................ 20 2 2 0.50 1 1 0 0 0 0
.....................................................................................................GGAGACTTGAGTGCAGAAG................................................................................................................................... 19 3 20 0.35 7 6 1 0 0 0
......................................................................................................ATGACTTGAGTGCAGAAGAGG................................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0
........................................................................................................AACTTGAGTGCAGAAGGGGAC.............................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0
.....................................................................................................AGAGACTTGAGTGCAGAAGAG................................................................................................................................. 21 3 3 0.33 1 1 0 0 0 0
........................................................................................................CACTTGAGTGCAGAAGAGG................................................................................................................................ 19 2 3 0.33 1 1 0 0 0 0
...................TTTGCGATTTCGTTTGGC...................................................................................................................................................................................................................... 18 1 4 0.25 1 0 0 0 1 0
..........................................................................................................CTTGAGTGCAGAAGAGGT............................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0
..........................................................................................................CTTGAGTGCAGAAGGGGAC.............................................................................................................................. 19 2 5 0.20 1 0 1 0 0 0
....................................................................................................TGGAGACTTGAGTGCAGAAG................................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0
.......................................................................................................CGACTTGAGTGCAGAAGAGG................................................................................................................................ 20 3 7 0.14 1 0 1 0 0 0
.......................................................................................................AAACTTGAGTGCAGAACAGG................................................................................................................................ 20 3 7 0.14 1 1 0 0 0 0
.........................................................................................................CCTTGAGTGCAGAAGAGGA............................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0
.......................................................................................................AGACTTGAGTGCAGGAGAG................................................................................................................................. 19 3 20 0.10 2 2 0 0 0 0
........................................................................................................GACTTGAGTGCAGAATAGG................................................................................................................................ 19 3 20 0.10 2 2 0 0 0 0
...................................................................................................................................................AACAGCGGAAATAAGAAC...................................................................................... 18 2 14 0.07 1 0 0 0 1 0
.........................................................................................................ACTTGAGTGCAAAAGAGG................................................................................................................................ 18 2 15 0.07 1 1 0 0 0 0
....................................................................................................GGAAAACTTGAGTGCAGAAG................................................................................................................................... 20 3 18 0.06 1 1 0 0 0 0
........................................................................................................GACTTGAGTGCAGAAGACG................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0
.......................................................................................................CGACTTGAGTGCAGAAGAG................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0
.........................................................................................................ACTTGAGTGCAGAAGACGA............................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................................................................AACAGCAACGGAGACCGATA............ 20 3 20 0.05 1 1 0 0 0 0
...................................................................................................................................CAACAACAATAATAATAACA.................................................................................................... 20 0 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

CATAGGCGACGACGACGATAAACGCTAACGCAAACCGTAATTTTTTACTGTTTTTTTTTTTTTTTATGGTTTTTATAAAGTTATGGGTTTGGTTGTTGTTATTTATGAACTCACGTCTTCCCCGTGTCGTTGTTGTTGTTATTATTATTGTCGCCGTTATTGTTGTTGTTATCGTTGTGGTTATACTCGTTGTTGTTAGTCTGTAGTTTAAGCCCGTCGTTGTCGTTGCCTCTCCCTTTGCCTTTGCCGTT
**************************************************.............................................................((((.......))))...........................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
......................................................................TTTTATAAAGTCATGTGTT.................................................................................................................................................................. 19 2 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004909:7915356-7915606 + dwi_2807 GTATCCGCTG----------------CTG--CTG-------CTATTTGCGA-TTGCGTTTG---------------------GC---------------------------------ATTAA-------------------------------------------------------AAAATGACAAAAAAAAAAAAAAATACCAAAAA-----------------------TAT---------------------------------------------------------------TTCAATAC--CCAAACC-----------------------------------------AACAAC------------------------------------AATAAATA-------CTTGA-------------------------------------------------------------------------------------------------------------GTGCAGAAGGGGCACAGCAACA------------------------ACAACAAT---AA----TA--------------------------------------------ATAACAGCGGCA---ATAACAACAACAA---T--AGCAACACCAATATGA------GCAACAACAAT---------------------------------------------------------------------CA----------------------------------------------------------------------------------GACATCAAATTCGGGCAGCAACAGCAACGGAGAGGGAA------------------------------------------ACGGAAACGGC-------AA
droVir3 scaffold_12875:7692403-7692642 + GCT-------G-CGTCTGTG------CGA--CGA------------------TCGCA--TA---------------------GT---------------------------------GTTTC-------------------------------------------------------CAGATGACAACAACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACACTCTATAACCTGAGC---AGCAGC---AA------CATCAGCAACATTAGCAGCAGCAGCAGCAACACA----------------------------------------------------------------------------------------AA---CAGCAACAGC------------------AACAACAC---CAACATCAGCTACA---ACA---ACAGCAG---CAGCAACAT-----TG---ATTTGAGCA---A---CACCAACATCAGC---------------------------------------------------AGCAGCATCATTA---GCA-------------------------------GCACAAA------------------------------------------------------------C---ATTAGCAACATTA------------------------------------------GCAGCAGCAGC-------AA
droMoj3 scaffold_6500:14671315-14671588 - GTCTCTGCTG----------------CGG--CTG-------CT------------------------------------GCTGCT---------------------------------------------GCTGCGTCAGCGACG-----------------------------------------------CT---GGCAACT------GTTAAAGG--CGAAC----AAA----CAAAACTAACGAAAACAACAAAAACAAAT-----G-------------------ACGAATAATACAGAAC--ATACGAC-----------------------------------------AGCGACAGCGACAGCGACAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---------------GAAGCAGCAATGGCAATAAC-------------A-----------------------------------------------------------AAAGCAACGTCAA---CAG-----CA---------------------------A---CAACAACAACAAC------AATAGCAAT---------AGCA----------------------------------------------------------------------------------------ACGATAACAACAACAGCCAGAACAGAAACACGCGCG----CAGCGTAGCAGATGATA------------------------------------------ATGAAGTTGGC-------AA
droGri2 scaffold_15081:2082949-2083251 - GTA-------T-TCGCT----TGCTGCTG--CTG-------CTATTTACGA-CTGCG----------------------TTGGCATATTTAACCAACTCATCCAACGCGATCCCCAA-----CAA-----------------------------------------------------AAAA----------AAAACCACAACAACAAT-----------------------AATG----------------------------------------------------------------------------------------------------------------------------------ACGACAACAAT---------------------------T-----------------------------------------------------------------------------------------------------------------ATTTCGGTTGGACAGAGGGCGAACAACAACAATTCCACGATAAACAACAACAACAACAACAAT---AA----CA--------------------------------------------ATACCAACAACA---ATAACAATACCAA---C--AACAACAACAC---------------------------------CAATAAT------AATAATAATAGC---------------------AGCAGTCCCAA-------------------TTCTGGAACGCCTGGCAGCAATG------GAAGTGGCACAAA---------------------------------------------C---AGCAGCAG-------------------------------------------------TGCAGCAAC-------AA
dp5 XR_group6:8816256-8816467 - AAA-------AA-------------------CAA----------------------------------------------------------------------------------------CACAAACAG--------------------------------------------CA---------------ACACCAACAACACCAAC-----------------------AATA------------------------TCACC-----A-------------------AC--------------------AACT--------------------------------------AA------------------------------------------------ACCAACATCCACAACAA-----------------------------------------------------------------------TGCCACA----------------------------------AACAGAAATAACACCA------------------------ACAACAAC---AA----TA--------------------------------------------ATACCAACAACA---ATAACAGCACCAA---C--AACAACACCAA------CAACAACAA---CATCAA---CAAG------------------------------------------------AACACCAACAAAA---ACA-------------------------------ATA---A------------------------------------------------------------CACCAACAACAACAAAA------------------------------------------GCACCAAAAGC-------AG
droPer2 scaffold_2:5826486-5826677 - TAA-------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGAAA----------ACACATTAGCAGC--------------------------------------------------------------------------------------------AG-------------------------------------------------------T------AACAGCAACAGTTGCAACACCAACAACAACAACAACTAATGCAACACCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACGCC---------------AGCAGCA---AC---------------A------------GCAG--------------------------------------------------------CAGCAAC------AGCAACAGT---A------GCAGCAG------------CAACAGTA----------------------------------------------------------------------------------------------------------------------GCAGCAGCAAAAAGCATGTTAGAAAAGAACATCAAGAAGGAATCAACGCCACCGGC-------AA
droAna3 scaffold_13117:4323908-4324131 - TTT-------G-TTGTT----------------GTGTGTGTGCGTGAAAAAAA------AAACAA---------------------------------------------------------CTGAAATTA--------------------------------------------CA---------------AATCGTGTTTTTCAAGC-----------------------AA---------------------------------AATTTCCAC------------------T-------------------C-----------------------------------------AACGA-----------------------------------------------AAATGCTTGTTTG-----------------------------------------------------------------------CTGCAAG----------------------------------GAAAGACGCTGCAACA------------------------ACGGCAAC---AA----CA--------------------------------------------AAACCATCGGGA---ACAACCAGACCAA---C--AACAACAAC------------------AACAAC------------------------------------------AGCCACT-A-----------------GGCCCA--AGCAAAA------------------------GCA------------------A---------------------------------------------CAGCAAG-ACAGCGACA------------------------------------------GAAATTGAGTC-------GG
droBip1 scf7180000396418:67550-67745 + AAT-------TA-------------------CAA----------------------------------------------------------------------------------------CAA--------------------------------------------------------------CAAAAA--------ATTACAAC--------------------------------------------------------------------------------------------AA-------------------------------------------------------C-----------------------------------------------------------------------------AAAAAC---TA---CAACTA---CAA------------------CTACAACAACAACAAC---AA----------------------------------------CT---------ACAACAA---------------CAAC------AA---CAACTACA---------------------------------------ACAACA---ACA---ACAACAA---CAACTAC-----------------------------------------------------------AACAACAAC---AACAACAACAACT-ACAACAA-----CAACAACT---A----------------------------------CA------------------ACAACAACAATTA---------------------------------CAACAAC---AACCAAA------------------------------------------ATTACAACAAAGGCGGACAA
droKik1 scf7180000302392:150302-150498 + CCGATAGTCG----------------CGA--TGA-------TCTTTTGCAG--------------------------------------------------------------------------------TTGGA------------------------------------------------------------------TTATAG----------------------------------------------------------------------------------------------------------C-----------------------------------------AAC-----------------------------------------------------------------------------AAGGAT---AA---TAATAA---TAG------------------CAACAGCAGTAGTACC---GG----------------------------------------CA---------ACAACAG---------------CAGC------AG----CA--------------------------------A---C---------AACAACA-----------------------------------------------------------A---CAATAATAATAACAACAGCAGCAGCAAC---AACAACATCAATC-GTGAGCG-----AAACAACA---GCA-------------------------------GAG-----------A------A---------------------------------------------CGGGAAAGGGAAAGGGA------------------------------------------GCGAGAGCGGG-------AG
droFic1 scf7180000454077:2720723-2720933 + CTG-------C-TG-----------------TTGGCTGGGA---------AAGTAGGAA---------------------------------------------------------------TAA-----------------------------------------------------------------------------------A------AAA--GAAAC----GAA----TAAAAAATGCGAAAAACCGGAAGTTG-----AATTTCGAC------------------ATATTGCAAAAC--ACAA----------------------------------------------CCACAG------------------------------------CAAAT-----------------------------ACAA---TAATA---AT---AATGACAG------------------CAA-------------------------------------------------------------------------------------------CAAC------AA---TAACAACAACAACAACAACAACAACAACAACA---AC--------------------------------------------------------------------------AAC------------------------------------------AACCA---------------------CA---ACA-------------------------------GCAA---------------------------------------------------------------ACGTAGCAACAACCACG------------------------------------------ACGGAAATGGC-------AA
droEle1 scf7180000491238:690914-691131 + CTG----CTG----------------CGG--CTG-------CTGTTGAGAG-TCGCTTGTT---------------------GG---------------------------------GT-------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------TGCAGCAC--CAGCA-----------------------------------------------A--------------------------------------------------------------------------------------CAGC---AA------CAACAGCAACATCAGCAGCAACAACAGCAACATC---AG----------------------------------------------------------------------------------------CAGCAACAAC------------------AGCAGCAG---CAACAACAGCAACA---ACA---ACAGCAA---CACCAACAG-----CA---ACATCAGCA---G---CAGCAGCACCTAC---------------------------------------------------AACAACAACAACA---ACA-------------------------------GCAA---------------------------------------------------------------CACCAACAGCAGCAACA------------------------------------------ACAACAACAGC-------AA
droRho1 scf7180000779588:773775-774018 - CGA-----TG----------------CGA--TTG-------CC------------------------------------ATTGCA---------------------------------------------ATTGCAATTGCAGCAGACGAGAAACAAC---------------------------------------GACAACTCT----------------------------------------------------------------------------------------------------------AACGGCATTCAATAAATCACTAAACACTTGAATGACGCTGCCAA------------------------------------------------TGCAACTTGCAACACAT-----------------------------------------------------------------------TGC------------------------------------------A---C---ACAGGCAGC------------------------------AG---CAGCAAC------------------AGCAACA---AC------------AGCAGCAGCA---ACAGCAAC---AA---C--A---------------------------------------------------------------------------GCAGCAA------------CACCAAATGCAC--------AGCAGCAACAT-----------------------GAAGGGGCAGAAA---------------------------------------------CGGAAACGGATGCCAGG------------------------------------------ATCCAAACGGC-------AA
droBia1 scf7180000297886:29-228 - AAC-------AA-------------------GAA----------------------------------------------------------------------------------------CAA--------------------------------------------------------------GAACAAGAACAAGAACAAGAAC-----------------------AAGA------------------------------------------------------A---------CAAGAACA--AGAAC-----------------------------------------AAGAA-----------------------------------------------------------------------------------------------------------------------CAAGAACAAGAACAAGAACAA----------------------------------GAA---CA------------------------------ATAACAAT---AA----CA--------------------------------------ATAACAATAACA---------ATAACAATAACAATAACAA-----TAACAA---TAACA---A---TAACAATAACAAT---------------------------------------------------AACAATAACAATA---ACA-------------------------------ATAA---------------------------------------------------------------CAATAACAATAACAATA------------------------------------------ACAATAACAAT-------AA
droTak1 scf7180000415785:77046-77283 + GTA-------A-TAAGA---------------------------------AAGTATAAACAATATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATAACAATACATTTAAATAAAATCAACCCACTTTGGACGTCGGACAAATGCTGCAATAT--CAGCA-----------------------------------------------A--------------------------------------------------------------------------------------------CCG---CAA------------------CAGCAACAACAGCAAC---AG----------------------------------------CA---------GCAACTG---------------CAAC------AGGAGCAACACCAGC------------------AACTGCAA------------------------------------CAG--------------------------------------------------CAGCAGC------AGCAACATC---AGCAACTTTTGCA-GCAACAG-----CTGCCGCA---GCA-------------------------------GCG------------------A---------------------------------------------CGGCAAACGTACAAGGA------------------------------------------GTATTTGCAGC-------AA
droEug1 scf7180000406487:168-375 - TAA-------C-AA-----------------TAA-----------------------------------------------------------------------------------------------------------------------------------------------CAAATAACAATAACAATAACAATAACAATAAC-----------------------AATA------------------------------------------------------A---------CAATAACA--ATAAC-----------------------------------------AATAA-----------------------------------------------------------------------------------------------------------------------CAATAACAATAACAATAACAA----------------------------------TAA---CA------------------------------ATAACAAT---AA----CA--------------------------------------ATAACAATAACA---------ATAACAATAACAATAACAA-----TAACAA---TAACA---A---TAACAATAACAAT---------------------------------------------------AACAATAACAATA---ACA-------------------------------ATAA---------------------------------------------------------------CAATAACAATAACAATA------------------------------------------ACAATAACAAT-------AA
dm3 chr2L:12271559-12271803 + AAT-------CCTGGCT----CTCTCCTT--CCA-------ATCTCTTCCA-GTGCTTTTG---------------------GT--------------------------------------------------------------------------------------------A---------------TGAGTGATAAGAGCAGCAGTGCAACGAACAGCCTGCCGAATAG---------------------------------------------------------------TCCCATAC--ACAG--C-----------------------------------------AACAAC------------------------------------AATA-----------AT------CCATCGCTGCTGAACAA---CAACA---AC---A----------------------------------------------------------------------------------------------------------------------ATAAC------------------------------------------------------A---------GCAACGGCACCAGCAGCAACAA--------CAGCTTAAA------CGTTGGCAACAACAAC------------------------------------------AGCAA---------------TCCGAG--CTTG--GGCGGCA------------------------GCA------------------A---------------------------------------------CAGCAACGCACTGGTTT------------------------------------------CCGTAGGCAGC-------AA
droSim2 x:18310331-18310568 + ATA-------C-CCTGTGTTGC-------TC---GGTGT--CCATTCGCAAAACGTGCCTCGCATTCAAAACGATTGTTGCTGCA---------------------------------------------AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA---ACCGCCATTTGGAATGCACTTGCGGATGAAATCCTGGCTGGGCAGAAGGGGCATGGCACCACTAGCACCACAAATACCATCGACGCCACC---ACGAC----CTCA--------------------------------------------ACCAACAACA---CCACCAATTCC--------------------------------------------------------------------------------------------------AA---CACCACTTCCCC----------------------------------CGCAAA------------------------------------------------------------C---ACCATTGCCAACA------------------------------------------CAATCAACAGC-------AA
droSec2 scaffold_8:1702992-1703229 + ATA-------C-CCTGTGTTGC-------TC---GGTGT--CCATTCGCAAAACGTGACTCGCATTCGAAACGATTGTTGCTGCA---------------------------------------------AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA---ACCGCCATTTGGAATGCACTTGCGGATGAAATCCTGGCTGGGCAGAAGGGGCATGGCACCGCTAGCACCACAAATACCATCGACGCCACC---ACGAC----TTCA--------------------------------------------ACCAACAACA---CCACCAACTCC--------------------------------------------------------------------------------------------------AA---CACCACTTCCCC----------------------------------CGCAAA------------------------------------------------------------C---ACCATTGCCAACA------------------------------------------CAATCAACAGC-------AA
droYak3 X:17940326-17940527 + GAC-------AA-------------------ATA----------------------------------------------------------------------------------------CCCAAACAAAGGCCCAAAACACACACAGAAAGGAACAACACAAAATTCGGGGT-----------------------------ACCAT--------------------AAATAG---------------------------------------------------------------AGCAA------AACAGT-----------------------------------------GACAATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAACAAC---AACAA----CAAA--------------------------------------------AGCAACAACA---ACAACAAAAGCAA---C--AACAA------------------------CAACAA---CAAAAGCAACAAC------AACAACAAA---------AGCA----------------------------------------------------------------------------------------------------------------------------------ACAGCAACAAAAGCA------------------------------------------GCGGCAACGAC-------AA
droEre2 scaffold_4690:7550004-7550242 + CTG----ATG----------------CTG--CAG-------CAGTTGGGCG-GTGCCAGTG---------------------GC-----------------------------------------------------------------------------------------------------------AACAACAACAGCAGCAAC-----------------------AACA------------------------------------------------------A---------CAACAAC-----AACA--------------------------------------GCA------------------------------------------------GCAGTGCCAG-----------------------------------------------------------------------CAACAACAACACCAT----------------------------------TAG---CG------------------------------CCAGTGCC---AA----CA-----------------GCAACAGCAACA---GCAACATCA---------TCGGCGGCAACAGCAGCAACAA--------CAACA------------------------ATGGCAGT---------------------------------------------------GGCAACGG----------------------CAACATGTTGCACG------GTGGCGCCGGCAGCAGCA---T---------------------------------------------CAGCGGCGACCAGGCGA------------------------------------------GCACAATCGAC-------GA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GTATCCGCTG----------------CTG--CTG-------CTATTTGCGA-TTGCGTTTG---------------------GC---------------------------------ATTAA-------------------------------------------------------AAAATGACAAAAAAAAAAAAAAATACCAAAAA-----------------------TAT---------------------------------------------------------------TTCAATAC--CCAAACC-----------------------------------------AACAAC------------------------------------AATAAATA-------CTTGA-------------------------------------------------------------------------------------------------------------GTGCAGAAGGGGCACAGCAACA------------------------ACAACAAT---AA----TA--------------------------------------------ATAACAGCGGCA---ATAACAACAACAA---T--AGCAACACCAATATGA------GCAACAACAAT---------------------------------------------------------------------CA----------------------------------------------------------------------------------GACATCAAATTCGGGCAGCAACAGCAACGGAGAGGGAA------------------------------------------ACGGAAACGGC-------AASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAGCGGCA---ATAACAA..........................................................................................................................................................................................................................................................................................................1911.00100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................A-------CTTGA-------------------------------------------------------------------------------------------------------------GTGCAGAAGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTTGA-------------------------------------------------------------------------------------------------------------GTGCAGAAGGGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................1950.20100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------ACAACAAT---AA----TA--------------------------------------------ATAACA..........................................................................................................................................................................................................................................................................................................................20200.05100010
droVir3
GCT-------G-CGTCTGTG------CGA--CGA------------------TCGCA--TA---------------------GT---------------------------------GTTTC-------------------------------------------------------CAGATGACAACAACGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACACTCTATAACCTGAGC---AGCAGC---AA------CATCAGCAACATTAGCAGCAGCAGCAGCAACACA----------------------------------------------------------------------------------------AA---CAGCAACAGC------------------AACAACAC---CAACATCAGCTACA---ACA---ACAGCAG---CAGCAACAT-----TG---ATTTGAGCA---A---CACCAACATCAGC---------------------------------------------------AGCAGCATCATTA---GCA-------------------------------GCACAAA------------------------------------------------------------C---ATTAGCAACATTA------------------------------------------GCAGCAGCAGC-------AASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACATCAGC---------------------------------------------------AGCAGCA.............................................................................................................................................................................................2030.331000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---A---CACCAACATCAGC---------------------------------------------------AGCA................................................................................................................................................................................................1950.201000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACA---ACA---ACAGCAG---CAGC...................................................................................................................................................................................................................................................................................................19130.081001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAGC---AA------CATCAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.061000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGC------------------AACAACAC---C.......................................................................................................................................................................................................................................................................................................................................19190.051000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------AA---CAGCAACAGC------------------AACAACA............................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACACA----------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................18200.051000000010000000000000000000000000000000000000000000000000000000
droMoj3
GTCTCTGCTG----------------CGG--CTG-------CT------------------------------------GCTGCT---------------------------------------------GCTGCGTCAGCGACG-----------------------------------------------CT---GGCAACT------GTTAAAGG--CGAAC----AAA----CAAAACTAACGAAAACAACAAAAACAAAT-----G-------------------ACGAATAATACAGAAC--ATACGAC-----------------------------------------AGCGACAGCGACAGCGACAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------CA---------------GAAGCAGCAATGGCAATAAC-------------A-----------------------------------------------------------AAAGCAACGTCAA---CAG-----CA---------------------------A---CAACAACAACAAC------AATAGCAAT---------AGCA----------------------------------------------------------------------------------------ACGATAACAACAACAGCCAGAACAGAAACACGCGCG----CAGCGTAGCAGATGATA------------------------------------------ATGAAGTTGGC-------AASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTA-------T-TCGCT----TGCTGCTG--CTG-------CTATTTACGA-CTGCG----------------------TTGGCATATTTAACCAACTCATCCAACGCGATCCCCAA-----CAA-----------------------------------------------------AAAA----------AAAACCACAACAACAAT-----------------------AATG----------------------------------------------------------------------------------------------------------------------------------ACGACAACAAT---------------------------T-----------------------------------------------------------------------------------------------------------------ATTTCGGTTGGACAGAGGGCGAACAACAACAATTCCACGATAAACAACAACAACAACAACAAT---AA----CA--------------------------------------------ATACCAACAACA---ATAACAATACCAA---C--AACAACAACAC---------------------------------CAATAAT------AATAATAATAGC---------------------AGCAGTCCCAA-------------------TTCTGGAACGCCTGGCAGCAATG------GAAGTGGCACAAA---------------------------------------------C---AGCAGCAG-------------------------------------------------TGCAGCAAC-------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
AAA-------AA-------------------CAA----------------------------------------------------------------------------------------CACAAACAG--------------------------------------------CA---------------ACACCAACAACACCAAC-----------------------AATA------------------------TCACC-----A-------------------AC--------------------AACT--------------------------------------AA------------------------------------------------ACCAACATCCACAACAA-----------------------------------------------------------------------TGCCACA----------------------------------AACAGAAATAACACCA------------------------ACAACAAC---AA----TA--------------------------------------------ATACCAACAACA---ATAACAGCACCAA---C--AACAACACCAA------CAACAACAA---CATCAA---CAAG------------------------------------------------AACACCAACAAAA---ACA-------------------------------ATA---A------------------------------------------------------------CACCAACAACAACAAAA------------------------------------------GCACCAAAAGC-------AGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---C--AACAACACCAA------CAACAACAA---CA...............................................................................................................................................................................................................................................................24100.1010001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---C--AACAACACCAA------CAACAA.......................................................................................................................................................................................................................................................................20170.0610010000000
droPer2
TAA-------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGAAA----------ACACATTAGCAGC--------------------------------------------------------------------------------------------AG-------------------------------------------------------T------AACAGCAACAGTTGCAACACCAACAACAACAACAACTAATGCAACACCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACGCC---------------AGCAGCA---AC---------------A------------GCAG--------------------------------------------------------CAGCAAC------AGCAACAGT---A------GCAGCAG------------CAACAGTA----------------------------------------------------------------------------------------------------------------------GCAGCAGCAAAAAGCATGTTAGAAAAGAACATCAAGAAGGAATCAACGCCACCGGC-------AASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TTT-------G-TTGTT----------------GTGTGTGTGCGTGAAAAAAA------AAACAA---------------------------------------------------------CTGAAATTA--------------------------------------------CA---------------AATCGTGTTTTTCAAGC-----------------------AA---------------------------------AATTTCCAC------------------T-------------------C-----------------------------------------AACGA-----------------------------------------------AAATGCTTGTTTG-----------------------------------------------------------------------CTGCAAG----------------------------------GAAAGACGCTGCAACA------------------------ACGGCAAC---AA----CA--------------------------------------------AAACCATCGGGA---ACAACCAGACCAA---C--AACAACAAC------------------AACAAC------------------------------------------AGCCACT-A-----------------GGCCCA--AGCAAAA------------------------GCA------------------A---------------------------------------------CAGCAAG-ACAGCGACA------------------------------------------GAAATTGAGTC-------GGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AA----CA--------------------------------------------AAACCATCGGGA---ACAACCAGACC......................................................................................................................................................................................................................................................................................................2813.003030000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAA------------------------GCA------------------A---------------------------------------------CAGCAAG-ACAGC..................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------------------GCA------------------A---------------------------------------------CAGCAAG-ACAGCG.................................................................2011.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------------GAAAGACGCTGCAACA------------------------ACGG...........................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................AAGC-----------------------AA---------------------------------AATTTCCAC------------------T-------------------C-----------------------------------------AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAG----------------------------------GAAAGACGCTGCAACA------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------------------GCA------------------A---------------------------------------------CAGCAAG-ACAGCGAC...............................................................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC------------------------------------------AGCCACT-A-----------------GGCCCA--AG...............................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----CA--------------------------------------------AAACCATCGGGA---ACAACCA..........................................................................................................................................................................................................................................................................................................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGACCAA---C--AACAACAAC------------------AAC................................................................................................................................................................................................................................................................2411.001010000
..T-------G-TTGTT----------------GTGTGTGTGCGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAA---C--AACAACAAC------------------AACAAC------------------------------------------...................................................................................................................................................................................................................2370.141010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---C--AACAACAAC------------------AACAAC------------------------------------------AG.................................................................................................................................................................................................................19200.051100000
droBip1
AAT-------TA-------------------CAA----------------------------------------------------------------------------------------CAA--------------------------------------------------------------CAAAAA--------ATTACAAC--------------------------------------------------------------------------------------------AA-------------------------------------------------------C-----------------------------------------------------------------------------AAAAAC---TA---CAACTA---CAA------------------CTACAACAACAACAAC---AA----------------------------------------CT---------ACAACAA---------------CAAC------AA---CAACTACA---------------------------------------ACAACA---ACA---ACAACAA---CAACTAC-----------------------------------------------------------AACAACAAC---AACAACAACAACT-ACAACAA-----CAACAACT---A----------------------------------CA------------------ACAACAACAATTA---------------------------------CAACAAC---AACCAAA------------------------------------------ATTACAACAAAGGCGGACAASizeHit CountTotal NormTotal
No Reads
droKik1
CCGATAGTCG----------------CGA--TGA-------TCTTTTGCAG--------------------------------------------------------------------------------TTGGA------------------------------------------------------------------TTATAG----------------------------------------------------------------------------------------------------------C-----------------------------------------AAC-----------------------------------------------------------------------------AAGGAT---AA---TAATAA---TAG------------------CAACAGCAGTAGTACC---GG----------------------------------------CA---------ACAACAG---------------CAGC------AG----CA--------------------------------A---C---------AACAACA-----------------------------------------------------------A---CAATAATAATAACAACAGCAGCAGCAAC---AACAACATCAATC-GTGAGCG-----AAACAACA---GCA-------------------------------GAG-----------A------A---------------------------------------------CGGGAAAGGGAAAGGGA------------------------------------------GCGAGAGCGGG-------AGSizeHit CountTotal NormTotal
No Reads
droFic1
CTG-------C-TG-----------------TTGGCTGGGA---------AAGTAGGAA---------------------------------------------------------------TAA-----------------------------------------------------------------------------------A------AAA--GAAAC----GAA----TAAAAAATGCGAAAAACCGGAAGTTG-----AATTTCGAC------------------ATATTGCAAAAC--ACAA----------------------------------------------CCACAG------------------------------------CAAAT-----------------------------ACAA---TAATA---AT---AATGACAG------------------CAA-------------------------------------------------------------------------------------------CAAC------AA---TAACAACAACAACAACAACAACAACAACAACA---AC--------------------------------------------------------------------------AAC------------------------------------------AACCA---------------------CA---ACA-------------------------------GCAA---------------------------------------------------------------ACGTAGCAACAACCACG------------------------------------------ACGGAAATGGC-------AASizeHit CountTotal NormTotal
No Reads
droEle1
CTG----CTG----------------CGG--CTG-------CTGTTGAGAG-TCGCTTGTT---------------------GG---------------------------------GT-------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------TGCAGCAC--CAGCA-----------------------------------------------A--------------------------------------------------------------------------------------CAGC---AA------CAACAGCAACATCAGCAGCAACAACAGCAACATC---AG----------------------------------------------------------------------------------------CAGCAACAAC------------------AGCAGCAG---CAACAACAGCAACA---ACA---ACAGCAA---CACCAACAG-----CA---ACATCAGCA---G---CAGCAGCACCTAC---------------------------------------------------AACAACAACAACA---ACA-------------------------------GCAA---------------------------------------------------------------CACCAACAGCAGCAACA------------------------------------------ACAACAACAGC-------AASizeHit CountTotal NormTotal
No Reads
droRho1
CGA-----TG----------------CGA--TTG-------CC------------------------------------ATTGCA---------------------------------------------ATTGCAATTGCAGCAGACGAGAAACAAC---------------------------------------GACAACTCT----------------------------------------------------------------------------------------------------------AACGGCATTCAATAAATCACTAAACACTTGAATGACGCTGCCAA------------------------------------------------TGCAACTTGCAACACAT-----------------------------------------------------------------------TGC------------------------------------------A---C---ACAGGCAGC------------------------------AG---CAGCAAC------------------AGCAACA---AC------------AGCAGCAGCA---ACAGCAAC---AA---C--A---------------------------------------------------------------------------GCAGCAA------------CACCAAATGCAC--------AGCAGCAACAT-----------------------GAAGGGGCAGAAA---------------------------------------------CGGAAACGGATGCCAGG------------------------------------------ATCCAAACGGC-------AASizeHit CountTotal NormTotal
No Reads
droBia1
AAC-------AA-------------------GAA----------------------------------------------------------------------------------------CAA--------------------------------------------------------------GAACAAGAACAAGAACAAGAAC-----------------------AAGA------------------------------------------------------A---------CAAGAACA--AGAAC-----------------------------------------AAGAA-----------------------------------------------------------------------------------------------------------------------CAAGAACAAGAACAAGAACAA----------------------------------GAA---CA------------------------------ATAACAAT---AA----CA--------------------------------------ATAACAATAACA---------ATAACAATAACAATAACAA-----TAACAA---TAACA---A---TAACAATAACAAT---------------------------------------------------AACAATAACAATA---ACA-------------------------------ATAA---------------------------------------------------------------CAATAACAATAACAATA------------------------------------------ACAATAACAAT-------AASizeHit CountTotal NormTotal
No Reads
droTak1
GTA-------A-TAAGA---------------------------------AAGTATAAACAATATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATAACAATACATTTAAATAAAATCAACCCACTTTGGACGTCGGACAAATGCTGCAATAT--CAGCA-----------------------------------------------A--------------------------------------------------------------------------------------------CCG---CAA------------------CAGCAACAACAGCAAC---AG----------------------------------------CA---------GCAACTG---------------CAAC------AGGAGCAACACCAGC------------------AACTGCAA------------------------------------CAG--------------------------------------------------CAGCAGC------AGCAACATC---AGCAACTTTTGCA-GCAACAG-----CTGCCGCA---GCA-------------------------------GCG------------------A---------------------------------------------CGGCAAACGTACAAGGA------------------------------------------GTATTTGCAGC-------AASizeHit CountTotal NormTotal
No Reads
droEug1
TAA-------C-AA-----------------TAA-----------------------------------------------------------------------------------------------------------------------------------------------CAAATAACAATAACAATAACAATAACAATAAC-----------------------AATA------------------------------------------------------A---------CAATAACA--ATAAC-----------------------------------------AATAA-----------------------------------------------------------------------------------------------------------------------CAATAACAATAACAATAACAA----------------------------------TAA---CA------------------------------ATAACAAT---AA----CA--------------------------------------ATAACAATAACA---------ATAACAATAACAATAACAA-----TAACAA---TAACA---A---TAACAATAACAAT---------------------------------------------------AACAATAACAATA---ACA-------------------------------ATAA---------------------------------------------------------------CAATAACAATAACAATA------------------------------------------ACAATAACAAT-------AASizeHit CountTotal NormTotal
No Reads
dm3
AAT-------CCTGGCT----CTCTCCTT--CCA-------ATCTCTTCCA-GTGCTTTTG---------------------GT--------------------------------------------------------------------------------------------A---------------TGAGTGATAAGAGCAGCAGTGCAACGAACAGCCTGCCGAATAG---------------------------------------------------------------TCCCATAC--ACAG--C-----------------------------------------AACAAC------------------------------------AATA-----------AT------CCATCGCTGCTGAACAA---CAACA---AC---A----------------------------------------------------------------------------------------------------------------------ATAAC------------------------------------------------------A---------GCAACGGCACCAGCAGCAACAA--------CAGCTTAAA------CGTTGGCAACAACAAC------------------------------------------AGCAA---------------TCCGAG--CTTG--GGCGGCA------------------------GCA------------------A---------------------------------------------CAGCAACGCACTGGTTT------------------------------------------CCGTAGGCAGC-------AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................AAGAGCAGCAGTGCAACGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000004803000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TTTTG---------------------GT--------------------------------------------------------------------------------------------A---------------TGAGTGATAAGAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004200000000000000000000000000000000000000000000000000000000000000000000101000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................A-----------AT------CCATCGCTGCTGAACAA---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------------------------------------AGCAA---------------TCCGAG--CTTG--GGCGGC...........................................................................................................................................................................24110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------------------------------------------------A---------GCAACGGCACCAGCAGCAAC......................................................................................................................................................................................................................................................................................................2419.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000005
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAACAA---CAACA---AC---A----------------------------------------------------------------------------------------------------------------------ATAAC------------------------------------------------------A---------GC........................................................................................................................................................................................................................................................................................................................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCTGCTGAACAA---CAACA---AC---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004200000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TGCTTTTG---------------------GT--------------------------------------------------------------------------------------------A---------------TGAGTGATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000115000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------------------------ATAAC------------------------------------------------------A---------GCAACGGCACCAGCAGCAAC......................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------TCCGAG--CTTG--GGCGGCA------------------------GC................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100002000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AT------CCATCGCTGCTGAACAA---CAACA---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA---------------TCCGAG--CTTG--GGCGGCA------------------------GC................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAG--CTTG--GGCGGCA------------------------GCA------------------A---------------------------------------------CAGCAACG.......................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TTTTG---------------------GT--------------------------------------------------------------------------------------------A---------------TGAGTGATAAGAGCAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TTTG---------------------GT--------------------------------------------------------------------------------------------A---------------TGAGTGATAAGAGCAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------TCCGAG--CTTG--GGCGGCA------------------------GCA------------------A---------------------------------------------C..............................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010102000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AATA-----------AT------CCATCGCTGCTGAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAACAA---CAACA---AC---A----------------------------------------------------------------------------------------------------------------------ATAAC------------------------------------------------------A---------GCA.......................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAA--------CAGCTTAAA------CG...........................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GCAGTGCAACGAACAGCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TAAGAGCAGCAGTGCAACGAACAGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AT------CCATCGCTGCTGAACAA---CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TTTG---------------------GT--------------------------------------------------------------------------------------------A---------------TGAGTGATAAGAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000
..........................................................................................................................................................................................................................AACAGCCTGCCGAATAG---------------------------------------------------------------TCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCACTGGTTT------------------------------------------CCGTAGGC............2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAA--------CAGCTTAAA------CG...........................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................ATAAGAGCAGCAGTGCAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GCCTGCCGAATAG---------------------------------------------------------------TCCCATAC--ACAG--C-----------------------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC------------------------------------------AGCAA---------------TCCGAG--CTTG--GGCGGCA------------------------GCA------------------.............................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................ATAG---------------------------------------------------------------TCCCATAC--ACAG--C-----------------------------------------AACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAC------------------------------------------------------A---------GCAACGGCACCAGCAGC.........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC------------------------------------------AGCAA---------------TCCGAG--CTTG--G................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------AGCAA---------------TCCGAG--CTTG--GGCGGCA------------------------GCA------------------.............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGCAACAA--------CAGCTT......................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................GCAGCAGTGCAACGAACAGCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAA--------CAGCTTAAA------CGTTGGCA.....................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAG--CTTG--GGCGGCA------------------------GCA------------------A---------------------------------------------CAGCAACA.......................................................................2811.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACTGGTTT------------------------------------------CCGTAGGC............1911.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGCACTGGTTT------------------------------------------CCGTAGGCAGC-------..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACGCACTGGTTT------------------------------------------CCGTAGGC............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................TG---------------------GT--------------------------------------------------------------------------------------------A---------------TGAGTGATAAGAGCAGCAGTGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA---------------TCCGAG--CTTG--GGCGG............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------A---------------------------------------------CAGCAACGCACTGGTTT------------------------------------------CT..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGTGATAAGAGCAGCAGTGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATA-------C-CCTGTGTTGC-------TC---GGTGT--CCATTCGCAAAACGTGCCTCGCATTCAAAACGATTGTTGCTGCA---------------------------------------------AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA---ACCGCCATTTGGAATGCACTTGCGGATGAAATCCTGGCTGGGCAGAAGGGGCATGGCACCACTAGCACCACAAATACCATCGACGCCACC---ACGAC----CTCA--------------------------------------------ACCAACAACA---CCACCAATTCC--------------------------------------------------------------------------------------------------AA---CACCACTTCCCC----------------------------------CGCAAA------------------------------------------------------------C---ACCATTGCCAACA------------------------------------------CAATCAACAGC-------AASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGATGAAATCCTGGCTGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
droSec2
ATA-------C-CCTGTGTTGC-------TC---GGTGT--CCATTCGCAAAACGTGACTCGCATTCGAAACGATTGTTGCTGCA---------------------------------------------AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA---ACCGCCATTTGGAATGCACTTGCGGATGAAATCCTGGCTGGGCAGAAGGGGCATGGCACCGCTAGCACCACAAATACCATCGACGCCACC---ACGAC----TTCA--------------------------------------------ACCAACAACA---CCACCAACTCC--------------------------------------------------------------------------------------------------AA---CACCACTTCCCC----------------------------------CGCAAA------------------------------------------------------------C---ACCATTGCCAACA------------------------------------------CAATCAACAGC-------AASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................TTGC-------TC---GGTGT--CCATTCGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020011
droYak3
GAC-------AA-------------------ATA----------------------------------------------------------------------------------------CCCAAACAAAGGCCCAAAACACACACAGAAAGGAACAACACAAAATTCGGGGT-----------------------------ACCAT--------------------AAATAG---------------------------------------------------------------AGCAA------AACAGT-----------------------------------------GACAATAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAACAAC---AACAA----CAAA--------------------------------------------AGCAACAACA---ACAACAAAAGCAA---C--AACAA------------------------CAACAA---CAAAAGCAACAAC------AACAACAAA---------AGCA----------------------------------------------------------------------------------------------------------------------------------ACAGCAACAAAAGCA------------------------------------------GCGGCAACGAC-------AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC---AACAA----CAAA--------------------------------------------A.............................................................................................................................................................................................................................................................................................................................17200.15300000000003
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC------AACAACAAA---------A..................................................................................................................................................................................................................17200.15300000000003
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA---ACAACAAAA........................................................................................................................................................................................................................................................................................................17200.15300000000003
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA---CAAAAGCAA...............................................................................................................................................................................................................................................15200.05100000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---ACAACAAAAGCAA---.................................................................................................................................................................................................................................................................................................15200.05100000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AACAA----CAAA--------------------------------------------AGCAA.........................................................................................................................................................................................................................................................................................................................15200.05100000000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------AACAACAAA---------AGCA----------------------------------------------------------------------------------------------------------------------------------A............................................................................15200.05100000000001
droEre2
CTG----ATG----------------CTG--CAG-------CAGTTGGGCG-GTGCCAGTG---------------------GC-----------------------------------------------------------------------------------------------------------AACAACAACAGCAGCAAC-----------------------AACA------------------------------------------------------A---------CAACAAC-----AACA--------------------------------------GCA------------------------------------------------GCAGTGCCAG-----------------------------------------------------------------------CAACAACAACACCAT----------------------------------TAG---CG------------------------------CCAGTGCC---AA----CA-----------------GCAACAGCAACA---GCAACATCA---------TCGGCGGCAACAGCAGCAACAA--------CAACA------------------------ATGGCAGT---------------------------------------------------GGCAACGG----------------------CAACATGTTGCACG------GTGGCGCCGGCAGCAGCA---T---------------------------------------------CAGCGGCGACCAGGCGA------------------------------------------GCACAATCGAC-------GASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................CA------------------------------------------------------A---------CAACAAC-----AACA--------------------------------------GCA------------------------------------------------GCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2231.0031100100
...........................................................................................................................................................................................................................................A------------------------------------------------------A---------CAACAAC-----AACA--------------------------------------GCA------------------------------------------------GCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2141.0040000310
............................................................................................................................................................................................................................................................................................................CAACAAC-----AACA--------------------------------------GCA------------------------------------------------GCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.5740201010
................................................................................................................................................................................................................C-----------------------AACA------------------------------------------------------A---------CAACAAC-----AACA--------------------------------------GCA------------------------------------------------GCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000010
...............................................................................................................................................................................................AACAACAACAGCAGCAAC-----------------------AACA------------------------------------------------------A---------CAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.2510100000
...........................................................................................................................................................................................................................................A------------------------------------------------------A---------CAACAAC-----AACA--------------------------------------GCA------------------------------------------------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1022000000
.............................................................................................................................................................................................................................................................................................................AACAAC-----AACA--------------------------------------GCA------------------------------------------------GCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.0910000010
........................................................................................................................................................................................................AGCAGCAAC-----------------------AACA------------------------------------------------------A---------CAACAAC-----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010
..........................................................................................................................................................................................................................................CA------------------------------------------------------A---------CAACAAC-----AACA--------------------------------------GCA------------------------------------------------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
................................................................................................................................................................................................ACAACAACAGCAGCAAC-----------------------AAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010
..........................................................................................................................................................................................................CAGCAAC-----------------------AACA------------------------------------------------------A---------CAACAAC-----AAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0511000000

Generated: 05/18/2015 at 05:20 AM