ID:

dwi_280

 Coordinate:

scf2_1100000003082:3471-3621 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.0 -27.5 -27.5

Flybase annnotation

exon [dwil_GLEANR_5435:2]; CDS [Dwil\GK22286-cds]; intron [Dwil\GK22286-in]

Repeatable elements

NameClassFamilyStrand
BEL-6_DWil-LTRLTRPao-
BEL-6_DWil-LTRLTRPao-
mature
  1. dwi_280  scf2_1100000003082:3472-3499 +
  2. scf2_1100000001605:10222-10249 +
  3. scf2_1100000013660:829-856 +
  4. scf2_1100000003350:701-728 +
  5. scf2_1100000013830:612-639 +
  6. scf2_1100000011330:594-621 +
  7. scf2_1100000002036:618-645 +
  8. scf2_1100000002301:5137-5164 +
  9. scf2_1100000000739:617-644 +
  10. scf2_1100000000789:1510-1537 +
  11. scf2_1100000004511:6827426-6827453 +
  12. scf2_1100000004511:6828564-6828591 +
  13. scf2_1100000004521:8846664-8846691 +
  14. scf2_1100000004762:5602103-5602130 +
  15. scf2_1100000004785:22936-22963 +
  16. scf2_1100000004785:24103-24130 +
  17. scf2_1100000004888:219197-219224 +
  18. scf2_1100000004961:2784894-2784921 +
  19. scf2_1100000004963:3529828-3529855 +
  20. scf2_1100000000233:2095-2122 +
  21. scf2_1100000007783:1003-1030 +
  22. scf2_1100000002555:1060-1087 +
  23. scf2_1100000013389:267-294 +
  24. scf2_1100000008347:918-945 +
  25. scf2_1100000002408:961-988 +
  26. scf2_1100000014460:189-216 +
  27. scf2_1100000000897:2285-2312 +
  28. scf2_1100000004521:8845524-8845551 +
  29. scf2_1100000004521:8847799-8847826 +
  30. scf2_1100000004585:678428-678455 +
  31. scf2_1100000004590:91743-91770 +
  32. scf2_1100000004590:92874-92901 +
  33. scf2_1100000004590:2746160-2746187 +
  34. scf2_1100000004632:1181-1208 +
  35. scf2_1100000004785:21743-21770 +
  36. scf2_1100000004884:10229-10256 +
  37. scf2_1100000004884:11367-11394 +
  38. scf2_1100000004888:70472-70499 +
  39. scf2_1100000004888:218034-218061 +
  40. scf2_1100000004943:467580-467607 +
star
  1. scf2_1100000001380:7772-7797 +
  2. scf2_1100000010576:651-676 +
  3. scf2_1100000001542:1714-1739 -
  4. dwi_280  scf2_1100000003082:3574-3599 +
  5. scf2_1100000010846:1141-1166 +
  6. scf2_1100000011028:854-879 +
  7. scf2_1100000003391:198-223 +
  8. scf2_1100000000789:1613-1638 +
  9. scf2_1100000004490:6822-6847 -
  10. scf2_1100000004585:5733634-5733659 +
  11. scf2_1100000004716:16513-16538 +
  12. scf2_1100000004887:435106-435131 +
  13. scf2_1100000004954:2013868-2013893 -
  14. scf2_1100000004954:3454679-3454704 -
  15. scf2_1100000004958:2106089-2106114 -
  16. scf2_1100000004958:2118752-2118777 -
  17. scf2_1100000012527:187-212 +
  18. scf2_1100000007293:1399-1424 -
  19. scf2_1100000012808:1261-1286 +
  20. scf2_1100000000057:779-804 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACACCCACGCATTGGGGGGTTGAAAAATTATTATTATTTTGGGCACGCCGTCGGCCACTTGACATCCTGCCGTCGTGATCGTTTGGGTTAGTTTACAACTACAAGTGTTTGTTCCCACAACATGGGAACTGATTGTATTTCTAGTCATATGCTAGGTTAGTTGTTTGTGACAAAGTACAGTTGTATTATATTTTCTTTAGTGCATCTGATTTGGTGAAGCCGCTTCGGATGGACACGGTGTTTATTCTTA
***************************************************.(((.(((..(((........)))))).))).....((((....(((((((.....(((.(((((((.....))))))).)))......((((((.....)))))).)))))))...)))).......************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body		 V119
head
................................................................................................................................................................................................TTTCTTTAGTGCATCTGATTTGGTGA................................. 26 0 20 2.25 45 45 0 0 0
...................................................TCGGCCACTTGACATCCTGCCGTCGTGA............................................................................................................................................................................ 28 0 20 1.45 29 0 29 0 0
.........................................................................................................................................................TAGGTTAGTTGTTTGTGACAAAGTAC........................................................................ 26 0 20 0.85 17 17 0 0 0
............................................................TGACATCCTGCCGTCGTGATCGTT....................................................................................................................................................................... 24 0 20 0.75 15 2 13 0 0
................................................................................................................................................................................TACAGTTGTATTATATTTTCTTTAGT................................................. 26 0 20 0.65 13 13 0 0 0
..............................................................................................................................................................TAGTTGTTTGTGACAAAGTACAGTTG................................................................... 26 0 20 0.55 11 2 9 0 0
...............................................................................TCGTTTGGGTTAGTTTACAACTACAA.................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0
......................................................................................................................................................TGCTAGGTTAGTTGTTTGTGACAAAG........................................................................... 26 0 20 0.50 10 9 1 0 0
................................................................................................................................ACTGATTGTATTTCTAGTCATATGC.................................................................................................. 25 0 4 0.50 2 0 2 0 0
.....................TGAAAAATTATTATTATTTTGGGCACG........................................................................................................................................................................................................... 27 0 20 0.45 9 9 0 0 0
..............................................................................................................................................TAGTCATATGCTAGGTTAGTTGTT..................................................................................... 24 0 20 0.40 8 0 8 0 0
........................................................................................................................................................................................TATTATATTTTCTTTAGTGCATCTGATT....................................... 28 0 20 0.40 8 8 0 0 0
.....................................................................................................................................................................................................TTAGTGCATCTGATTTGGTGAAGC.............................. 24 0 20 0.40 8 8 0 0 0
................................................................................................................................................................................TACAGTTGTATTATATTTTCTTTAGTGC............................................... 28 0 20 0.35 7 7 0 0 0
..................................................................................................................................................................TGTTTGTGACAAAGTACAGTTGTAT................................................................ 25 0 20 0.35 7 6 1 0 0
....................................................CGGCCACTTGACATCCTGCCGTCGTGA............................................................................................................................................................................ 27 0 20 0.35 7 0 7 0 0
...........................................................TTGACATCCTGCCGTCGTGATCGT........................................................................................................................................................................ 24 0 20 0.30 6 0 6 0 0
.................................................................................................................................................................................................TTCTTTAGTGCATCTGATTTGGTGA................................. 25 0 20 0.30 6 0 6 0 0
....................................................................................................................................................................TTTGTGACAAAGTACAGTTGTATTA.............................................................. 25 0 20 0.30 6 6 0 0 0
............................................................TGACATCCTGCCGTCGTGATCGTTTG..................................................................................................................................................................... 26 0 20 0.30 6 0 6 0 0
...........................................................TTGACATCCTGCCGTCGTGATCGTT....................................................................................................................................................................... 25 0 20 0.30 6 0 6 0 0
............................................................TGACATCCTGCCGTCGTGATCGT........................................................................................................................................................................ 23 0 20 0.25 5 5 0 0 0
................................TATTATTTTGGGCACGCCGTCGGCC.................................................................................................................................................................................................. 25 0 8 0.25 2 2 0 0 0
........................................TGGGCACGCCGTCGGCCACTTGACA.......................................................................................................................................................................................... 25 0 9 0.22 2 2 0 0 0
...........................................................TTGACATCCTGCCGTCGTGATCGTTT...................................................................................................................................................................... 26 0 20 0.20 4 0 4 0 0
...................................................................................................................................GATTGTATTTCTAGTCATATGCTAGGT............................................................................................. 27 0 20 0.20 4 1 3 0 0
...........................................................................................................................................................................................TATATTTTCTTTAGTGCATCTGAT........................................ 24 0 20 0.20 4 4 0 0 0
........................................................................................................................................................................TGACAAAGTACAGTTGTATTATATT.......................................................... 25 0 20 0.20 4 4 0 0 0
....................................................................TGCCGTCGTGATCGTTTGGGTTA................................................................................................................................................................ 23 0 20 0.20 4 4 0 0 0
.....................................................................................................................................................................TTGTGACAAAGTACAGTTGTATTATATT.......................................................... 28 0 20 0.20 4 4 0 0 0
............................................................TGACATCCTGCCGTCGTGATCGTTTGGG................................................................................................................................................................... 28 0 20 0.15 3 0 3 0 0
...................................................TCGGCCACTTGACATCCTGCCGTCGT.............................................................................................................................................................................. 26 0 20 0.15 3 0 3 0 0
..................................................................................................................................TGATTGTATTTCTAGTCATATGC.................................................................................................. 23 0 20 0.15 3 0 3 0 0
.................................................................................GTTTGGGTTGGTTTATCACT...................................................................................................................................................... 20 3 20 0.15 3 0 0 1 2
............................................................TGACATCCTGCCGTCGTGATCGTTT...................................................................................................................................................................... 25 0 20 0.15 3 0 3 0 0
.......................................................CCACTTGACATCCTGCCGTCGTGATC.......................................................................................................................................................................... 26 0 20 0.15 3 3 0 0 0
........................................................CACTTGACATCCTGCCGTCGTGATCG......................................................................................................................................................................... 26 0 20 0.15 3 0 3 0 0
................................TATTATTTTGGGCACGCCGTCGGC................................................................................................................................................................................................... 24 0 8 0.13 1 0 1 0 0
.............................TATTATTATTTTGGGCACGCCGTCGGC................................................................................................................................................................................................... 27 0 8 0.13 1 0 1 0 0
..............................................CGCCGTCGGCCACTTGACATCCTGC.................................................................................................................................................................................... 25 0 9 0.11 1 0 1 0 0
.......................................TTGGGCACGCCGTCGGCCACTTGAC........................................................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0
........................................TGGGCACGCCGTCGGCCACTTGACATC........................................................................................................................................................................................ 27 0 9 0.11 1 0 1 0 0
........................................TGGGCACGCCGTCGGCCACTTGACAT......................................................................................................................................................................................... 26 0 9 0.11 1 1 0 0 0
...................................................................................................................................................................GTTTGTGACAAAGTACAGTTGTATT............................................................... 25 0 20 0.10 2 2 0 0 0
.....................................................................................................................................................................................................TTAGTGCATCTGATTTGGTGAA................................ 22 0 20 0.10 2 2 0 0 0
.......................................................CCACTTGACATCCTGCCGTCGTGA............................................................................................................................................................................ 24 0 20 0.10 2 0 2 0 0
....................................................................................................................................................TATGCTAGGTTAGTTGTTTGTGACAAAG........................................................................... 28 0 20 0.10 2 1 1 0 0
....................................................................TGCCGTCGTGATCGTTTGGGTTAGTT............................................................................................................................................................. 26 0 20 0.10 2 0 2 0 0
...................................TATTTTGGGCACGCCGTCGG.................................................................................................................................................................................................... 20 0 10 0.10 1 1 0 0 0
...................................TATTTTGGGCACGCCGTCGGC................................................................................................................................................................................................... 21 0 10 0.10 1 1 0 0 0
..................................................................................................................................TGATTGTATTTCTAGTCATATGCTAGGT............................................................................................. 28 0 20 0.10 2 0 2 0 0
.......................................................................................................................................................................................................AGTGCATCTGATTTGGTGAAGCCGCTT......................... 27 0 20 0.10 2 0 2 0 0
.................................................................................................................................................TCATATGCTAGGTTAGTTGTTTGTGA................................................................................ 26 0 20 0.10 2 2 0 0 0
..................................................................................................................................................................................................TCTTTAGTGCATCTGATTTGGTGAAG............................... 26 0 20 0.10 2 0 2 0 0
............................................................TGACATCCTGCCGTCGTGATCGTTTGGGT.................................................................................................................................................................. 29 0 20 0.10 2 0 2 0 0
......................................................................................................................................................................TGTGACAAAGTACAGTTGTATTATAT........................................................... 26 0 20 0.10 2 2 0 0 0
..................................................................................................................................................................TGTTTGTGACAAAGTACAGTTGT.................................................................. 23 0 20 0.10 2 2 0 0 0
.......................................................................................................................................................................................................................TGAAGCCGCTTCGGATGGACACGATG.......... 26 1 20 0.10 2 2 0 0 0
.............................................................GACATCCTGCCGTCGTGATCGTTTGG.................................................................................................................................................................... 26 0 20 0.10 2 0 2 0 0
.....................................................................................................................................TTGTATTTCTAGTCATATGCTAGGT............................................................................................. 25 0 20 0.10 2 0 2 0 0
......................................................................................................................................................................................................TAGTGCATCTGATTTGGTGAAGCCG............................ 25 0 20 0.10 2 0 2 0 0
............................................................................................................................................................................................................ATCTGATTTGGTGAAGCCGCT.......................... 21 0 20 0.10 2 0 2 0 0
...............................................................CATCCTGCCGTCGTGATCGTT....................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0
......................................................................................................................................................TGCTAGGTTAGTTGTTTGTGACAAA............................................................................ 25 0 20 0.05 1 0 1 0 0
..................................................................................................................................................................TGTTTGTGACAAAGTACATTTGTA................................................................. 24 1 20 0.05 1 1 0 0 0
.......................................................CCACTTGACATCCTGCCGTCG............................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
............................................................................................................................................................................................................ATCTGATTTGGTGAAGCCGCTT......................... 22 0 20 0.05 1 1 0 0 0
............................................................TGACATCCTGCCGTCGTGAT........................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
...................................................................CTGCCGTCGTGATCGTTTGGGTTA................................................................................................................................................................ 24 0 20 0.05 1 0 0 1 0
........................................................................................................................................................................................TATTATATTTTCTTTAGTGCATC............................................ 23 0 20 0.05 1 0 1 0 0
.....................................................GGCCACTTGACATCCTGCCGTCGT.............................................................................................................................................................................. 24 0 20 0.05 1 0 0 1 0
.........................................................................................................................................................TAGGTTAGTTGTTTGTGACAAAGTACAGT..................................................................... 29 0 20 0.05 1 0 1 0 0
..........................................................................................................................................................AGGTTAGTTGTTTGTGACAAAGTACAG...................................................................... 27 0 20 0.05 1 0 1 0 0
...........................................................TTGACATCCTGCCGTCGTGATC.......................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0
..............................................................................................................................................................TAGTTGTTTGTGACAAAGTACAGT..................................................................... 24 0 20 0.05 1 0 1 0 0
.................................................................................................................................................................TTGTTTGTGACAAAGTACAGTTGTA................................................................. 25 0 20 0.05 1 1 0 0 0
.............................................................GACATCCTGCCGTCGTGATCGTT....................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0
.....................................................................................................................................................................................TTGTATTATATTTTCTTTAGTGCATC............................................ 26 0 20 0.05 1 1 0 0 0
........................................................CACTTGACATCCTGCCGTCGT.............................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................ATGCTAGGTTAGTTGTTT.................................................................................... 18 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................................................TAGTGCATCTGATTTGGTGAAGCC............................. 24 0 20 0.05 1 1 0 0 0
...................................................................................................................................................................GTTTGTGACAAAGTACAGTTGT.................................................................. 22 0 20 0.05 1 0 1 0 0
..............................................................................................................................................................TAGTTGTTTGTGACAAAGTACAGTTGT.................................................................. 27 0 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................TTTAGTGCATCTGATTTGGTGAAG............................... 24 0 20 0.05 1 0 1 0 0
.............................................................GACATCCTGCCGTCGTGATCGTTTGGGT.................................................................................................................................................................. 28 0 20 0.05 1 0 1 0 0
.........................................................................................................................................................TAGGTTAGTTGTTTGTGACAAAGTACA....................................................................... 27 0 20 0.05 1 0 1 0 0
....................................................CGGCCACTTGACATCCTGCCGTCGTGAT........................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0
.....................................................................................................................................................................TTGTGACAAAGTACAGTTGTATTATA............................................................ 26 0 20 0.05 1 1 0 0 0
....................................................................................................TACAAGTGTTTGTTCCCACAACATG.............................................................................................................................. 25 0 20 0.05 1 1 0 0 0
.................................................CGTCGGCCACTTGACATCCTGCC................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0
..........................................GGCACGCTGTCGGCTACC............................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0
..................................................................................................................................................................TGTTTGTGACAAAGTACAGTTGTATTA.............................................................. 27 0 20 0.05 1 1 0 0 0
.........................................................................................................................................................................................ATTATATTTTCGTTAGTGCATCTGAT........................................ 26 1 20 0.05 1 0 1 0 0
.........................................................................................................................................................TAGGTTAGTTGTTTGTGACAAAGTA......................................................................... 25 0 20 0.05 1 0 1 0 0
....................................................................................................................................................................TTTGTGACAAAGTACAGTTGTATT............................................................... 24 0 20 0.05 1 1 0 0 0
..................................................................................................................................TGATTGTATTTCTAGTCATATGCTAGG.............................................................................................. 27 0 20 0.05 1 0 1 0 0
.....................................................GGCCACTTGACATCCTGCCGTCG............................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0
......................................................................................................................................................TGCTAGGTTAGTTGTTTGTGACAA............................................................................. 24 0 20 0.05 1 1 0 0 0
..............................................................................................................................................TAGTCATATGCTAGGTTAGTTGTTTGG.................................................................................. 27 1 20 0.05 1 0 1 0 0
...............................................................................................................................................................................................................TGATTTGGTGAAGCCGCTT......................... 19 0 20 0.05 1 0 1 0 0
................................................................................................................................................................CTTGTTTGTGACAAAGTACAGTTGT.................................................................. 25 1 20 0.05 1 1 0 0 0
....................................................CGGCCACTTGACATCCTGCCGTCGT.............................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0
......................................................................................................................................TGTATTTCTAGTCATATGCTAGGTT............................................................................................ 25 0 20 0.05 1 0 1 0 0
....................................................................................................................................................................................GTTGTATTATATTTTCTTTAG.................................................. 21 0 20 0.05 1 1 0 0 0
...........................ATTATTATTATTTTGGGCA............................................................................................................................................................................................................. 19 0 20 0.05 1 0 1 0 0
.........................................................................................................................................................TAGGTTAGTTGTTTGTGACAAAGTACAG...................................................................... 28 0 20 0.05 1 0 1 0 0
......................................................................................................................................................TGCTAGGTTAGTTGTTTGTGACCAAG........................................................................... 26 1 20 0.05 1 1 0 0 0
..................................................................................................................................................................TGTTTGTGACATAGTACAGTTGTAT................................................................ 25 1 20 0.05 1 1 0 0 0
..........................................................................................................................................................................................TTATATTTTCTTTAGTGCATCTGAT........................................ 25 0 20 0.05 1 0 1 0 0
...............................................................................................................................................................AGTTGTTTGTGACAAAGTACAGT..................................................................... 23 0 20 0.05 1 0 1 0 0
.........................................................ACTTGACATCCTGCCGTCGTGA............................................................................................................................................................................ 22 0 20 0.05 1 0 1 0 0
..........................................................CTTGACATCCTGCCGTCGTGATCGT........................................................................................................................................................................ 25 0 20 0.05 1 0 1 0 0
..........................................................................CGTGATCGTTTGGGTTAGTTT............................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0
.................................................................................................................................................................................................TTCTTTAGTGCATCTGATTTGGTGAA................................ 26 0 20 0.05 1 1 0 0 0
.................................................................TCCTGCCGTCGTGATCGTTTGGG................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0
...................................................TCGGCCACTTGGCATCCTGCCGTCGTGA............................................................................................................................................................................ 28 1 20 0.05 1 0 1 0 0
......................................................................................................................................................................................................TAGTGCATCTGATTTGGTGAAGC.............................. 23 0 20 0.05 1 0 1 0 0
................................................................................................................................................................GTTGTTTGTGACAAAGTACAGTTG................................................................... 24 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................TTAGTGCATCTGATTTGGTGA................................. 21 0 20 0.05 1 0 0 0 1
...................................................TCGGCCACTTGACATCCTGCCGTCGTGAT........................................................................................................................................................................... 29 0 20 0.05 1 0 1 0 0
............................................................TGACATCCTGCCGTCGTGA............................................................................................................................................................................ 19 0 20 0.05 1 0 0 1 0
.........................................................................................................................................................................GACAAAGTACAGTTGTATTATATTT......................................................... 25 0 20 0.05 1 0 1 0 0
.....................................................................................................................................................................................................TTAGTGCATCTGATTTGGTGAAGCCGCT.......................... 28 0 20 0.05 1 0 1 0 0
................................................................................................................................................................GTTGTTTGTGACAAAGTACAGT..................................................................... 22 0 20 0.05 1 0 1 0 0
....................................................................................................TACAAGTGTTTGTTCCCA..................................................................................................................................... 18 0 20 0.05 1 0 1 0 0
.....................................................................................................................................................................TTATGACAAAGTACAGTTGTATTATATT.......................................................... 28 1 20 0.05 1 0 1 0 0
......................................................................................................................................................TGCTAGGTTAGTTGTTTGTGA................................................................................ 21 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

GTGTGGGTGCGTAACCCCCCAACTTTTTAATAATAATAAAACCCGTGCGGCAGCCGGTGAACTGTAGGACGGCAGCACTAGCAAACCCAATCAAATGTTGATGTTCACAAACAAGGGTGTTGTACCCTTGACTAACATAAAGATCAGTATACGATCCAATCAACAAACACTGTTTCATGTCAACATAATATAAAAGAAATCACGTAGACTAAACCACTTCGGCGAAGCCTACCTGTGCCACAAATAAGAAT
************************************************************************.(((.(((..(((........)))))).))).....((((....(((((((.....(((.(((((((.....))))))).)))......((((((.....)))))).)))))))...)))).......*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
...............................................................GTAGGACGGCAGCACTAGCAAACCCA.................................................................................................................................................................. 26 0 20 1.25 25 0 25 0
.........................................................................AGCACTAGCAAACCCAATCAAATGTT........................................................................................................................................................ 26 0 20 1.15 23 23 0 0
................................................................TAGGACGGCAGCACTAGCAAACCCA.................................................................................................................................................................. 25 0 20 0.60 12 12 0 0
................................................................................................................................TGACTAACATAAAGATCAGTATAC................................................................................................... 24 0 4 0.25 1 0 1 0
................................................................................................................................TGACTAACATAAAGATCAGTATACGAT................................................................................................ 27 0 4 0.25 1 0 1 0
.................................................................................................................................................................................................AAGAAATCACGTAGACTAAACCAC.................................. 24 0 20 0.15 3 3 0 0
..........................................CCGTGCGGCAGCCGGTGAACTGT.......................................................................................................................................................................................... 23 0 9 0.11 1 1 0 0
........................................ACCCGTGCGGCAGCCGGTGAACTG........................................................................................................................................................................................... 24 0 9 0.11 1 1 0 0
..............................................GCGGCAGCCGGTGAACTGTAGGA...................................................................................................................................................................................... 23 0 9 0.11 1 1 0 0
...........................................CGTGCGGCAGCCGGTGAACTGTAGG....................................................................................................................................................................................... 25 0 9 0.11 1 1 0 0
.................................................................AGGACGGCAGCACTAGCAAA...................................................................................................................................................................... 20 0 20 0.10 2 2 0 0
.................................................................................................................................................................AACAAACACTGTTTCATGTCAACAT................................................................. 25 0 20 0.10 2 2 0 0
...............................................................................................................................................................TCAACAAACACTGTTTCATGTCAACAT................................................................. 27 0 20 0.10 2 2 0 0
.........................................CCCGTGCGGCAGCCGTTGAAC............................................................................................................................................................................................. 21 1 13 0.08 1 0 1 0
...........................................................................................................................................................CCAATCAACAAACACTGTTTCATGTC...................................................................... 26 0 20 0.05 1 1 0 0
............................................................................................................................................................................TTTCATGTCAACATAATATAAAAGA...................................................... 25 0 20 0.05 1 1 0 0
...............................................................GTAGGACGGCAGCGCTAGCAAACCCA.................................................................................................................................................................. 26 1 20 0.05 1 0 1 0
........................................................................ATGCACTAGCAAACCCAATCAAATGTT........................................................................................................................................................ 27 2 20 0.05 1 0 1 0
................................................................................................................................................CAGTATACGATCCAATCAACAAACACTG............................................................................... 28 0 20 0.05 1 1 0 0
.................................................................................................................................................................AACAAACACTGTTTCATGTCAACA.................................................................. 24 0 20 0.05 1 1 0 0
................................................................................................................................................................................................AAAGAAATCACGTAGACTAAACCACTTC............................... 28 0 20 0.05 1 1 0 0
..................................................................AGACGGCAGCACTAGCAAACCCA.................................................................................................................................................................. 23 1 20 0.05 1 1 0 0
.............................................................................................................................................................................TTCATGTCAACATAATATAAAAGAA..................................................... 25 0 20 0.05 1 1 0 0
.......................................................................................................................................................................CACTGTTTCATGTCAACAT................................................................. 19 0 20 0.05 1 1 0 0
...............................................................GTAGGACGGCAGCACTAGCAAACCCAAT................................................................................................................................................................ 28 0 20 0.05 1 0 1 0
.....................................................................................................................................................................................................AATCACGTAGACTAAACCAC.................................. 20 0 20 0.05 1 0 1 0
...............................................................................................................................................................TCAACAAACACTGTTTCATGTCAACA.................................................................. 26 0 20 0.05 1 1 0 0
.....................................................................CGGCAGCACTAGCAAACCCAATCAA............................................................................................................................................................. 25 0 20 0.05 1 0 1 0
..............................................................TGTAGGACGGCAGCACTAGCAA....................................................................................................................................................................... 22 0 20 0.05 1 1 0 0
....................................................GCCGGTGAACTGTAGGAC..................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0
...................................................AGCCGGTGAACTGTAGGACGGCAGCACT............................................................................................................................................................................ 28 0 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000003082:3421-3671 + dwi_280 CACACCCACGCATTGGGGGGTTGAAAAATTATTATTATTTTGGGCACGCCGTCGGCCACTTGACATCCTGCCGTCGTGATCGTTTGGGTTAGTTTACAACTACAAGTGTTTGTTCCCACAACATGGGAACTGATTGTATTTCTAGTCATATGCTAGGTTA-GTTGTTTGTGACAAAGTACAGTTGTATTATATTTTCTTTAGTGCATCTGATTTGGTG-AAGCCGCTTCGGATGGACACGGT-----GT--TTATTCTTA
droPer2 scaffold_219:61751-61800 + GAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------GCCG-AACCTGCCATGGACAGACCCGACATTTTACGAAAGCTCACA
droAna3 scaffold_12916:10434928-10435011 + TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATAAGTCGGATTGGAAAGGATTGTATTTAGCGGATCCCAATTTCGATAAACCTGGTCGAATTGACCTGGT-----TA--TTGG----T
droBip1 scf7180000392127:12153-12167 - CGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTT-----AT--TAG-----G
droFic1 scf7180000453308:37269-37324 - TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGCGGACCCGAAATTCTATGAGAGTGCACAGATAGACGTGTT-----AA--TTG-----G
droEle1 scf7180000490744:16674-16679 + TTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------------T
droRho1 scf7180000774556:5735-5806 - ATA---------------------------------------------------------------------------------------------------------------------------------------------------TATTAATTTGTGATGTTAGCAATAAAGTTAACATATAATATGTTTTCTTCAGCATATCTAAGCTTGTA-----------------------------------------A
droBia1 scf7180000301891:21883-21883 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000407820:25223-25235 - GTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CCGGTCTTA
droYak3 chr3h:81315-81336 + GAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGACATGGT-----GA--TAGGTG--T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CACACCCACGCATTGGGGGGTTGAAAAATTATTATTATTTTGGGCACGCCGTCGGCCACTTGACATCCTGCCGTCGTGATCGTTTGGGTTAGTTTACAACTACAAGTGTTTGTTCCCACAACATGGGAACTGATTGTATTTCTAGTCATATGCTAGGTTA-GTTGTTTGTGACAAAGTACAGTTGTATTATATTTTCTTTAGTGCATCTGATTTGGTG-AAGCCGCTTCGGATGGACACGGT-----GT--TTATTCTTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................TTTCTTTAGTGCATCTGATTTGGTG-A........................................26202.2545000450
...................................................TCGGCCACTTGACATCCTGCCGTCGTGA.....................................................................................................................................................................................28201.4529029000
.........................................................................................................................................................TAGGTTA-GTTGTTTGTGACAAAGTAC................................................................................26200.8517000170
............................................................TGACATCCTGCCGTCGTGATCGTT................................................................................................................................................................................24200.7515013020
.................................................................................................................................................................................TACAGTTGTATTATATTTTCTTTAGT.........................................................26200.6513000130
..............................................................................................................................................................TA-GTTGTTTGTGACAAAGTACAGTTG...........................................................................26200.551109020
...............................................................................TCGTTTGGGTTAGTTTACAACTACAA...........................................................................................................................................................2620.50100010
......................................................................................................................................................TGCTAGGTTA-GTTGTTTGTGACAAAG...................................................................................26200.501001090
................................................................................................................................ACTGATTGTATTTCTAGTCATATGC...........................................................................................................2540.50202000
.....................TGAAAAATTATTATTATTTTGGGCACG....................................................................................................................................................................................................................27200.45900090
..............................................................................................................................................TAGTCATATGCTAGGTTA-GTTGTT.............................................................................................24200.40808000
.........................................................................................................................................................................................TATTATATTTTCTTTAGTGCATCTGATT...............................................28200.40800080
......................................................................................................................................................................................................TTAGTGCATCTGATTTGGTG-AAGC.....................................24200.40800080
.................................................................................................................................................................................TACAGTTGTATTATATTTTCTTTAGTGC.......................................................28200.35700070
...................................................................................................................................................................TGTTTGTGACAAAGTACAGTTGTAT........................................................................25200.35701060
....................................................CGGCCACTTGACATCCTGCCGTCGTGA.....................................................................................................................................................................................27200.35707000
...........................................................TTGACATCCTGCCGTCGTGATCGT.................................................................................................................................................................................24200.30606000
..................................................................................................................................................................................................TTCTTTAGTGCATCTGATTTGGTG-A........................................25200.30606000
.....................................................................................................................................................................TTTGTGACAAAGTACAGTTGTATTA......................................................................25200.30600060
............................................................TGACATCCTGCCGTCGTGATCGTTTG..............................................................................................................................................................................26200.30606000
...........................................................TTGACATCCTGCCGTCGTGATCGTT................................................................................................................................................................................25200.30606000
............................................................TGACATCCTGCCGTCGTGATCGT.................................................................................................................................................................................23200.25500050
................................TATTATTTTGGGCACGCCGTCGGCC...........................................................................................................................................................................................................2580.25200020
........................................TGGGCACGCCGTCGGCCACTTGACA...................................................................................................................................................................................................2590.22200020
...........................................................TTGACATCCTGCCGTCGTGATCGTTT...............................................................................................................................................................................26200.20404000
...................................................................................................................................GATTGTATTTCTAGTCATATGCTAGGT......................................................................................................27200.20403010
............................................................................................................................................................................................TATATTTTCTTTAGTGCATCTGAT................................................24200.20400040
.........................................................................................................................................................................TGACAAAGTACAGTTGTATTATATT..................................................................25200.20400040
....................................................................TGCCGTCGTGATCGTTTGGGTTA.........................................................................................................................................................................23200.20400040
......................................................................................................................................................................TTGTGACAAAGTACAGTTGTATTATATT..................................................................28200.20400040
............................................................TGACATCCTGCCGTCGTGATCGTTTGGG............................................................................................................................................................................28200.15303000
...................................................TCGGCCACTTGACATCCTGCCGTCGT.......................................................................................................................................................................................26200.15303000
..................................................................................................................................TGATTGTATTTCTAGTCATATGC...........................................................................................................23200.15303000
............................................................TGACATCCTGCCGTCGTGATCGTTT...............................................................................................................................................................................25200.15303000
.......................................................CCACTTGACATCCTGCCGTCGTGATC...................................................................................................................................................................................26200.15300030
........................................................CACTTGACATCCTGCCGTCGTGATCG..................................................................................................................................................................................26200.15303000
................................TATTATTTTGGGCACGCCGTCGGC............................................................................................................................................................................................................2480.13101000
.............................TATTATTATTTTGGGCACGCCGTCGGC............................................................................................................................................................................................................2780.13101000
..............................................CGCCGTCGGCCACTTGACATCCTGC.............................................................................................................................................................................................2590.11101000
.......................................TTGGGCACGCCGTCGGCCACTTGAC....................................................................................................................................................................................................2590.11100010
........................................TGGGCACGCCGTCGGCCACTTGACATC.................................................................................................................................................................................................2790.11101000
........................................TGGGCACGCCGTCGGCCACTTGACAT..................................................................................................................................................................................................2690.11100010
....................................................................................................................................................................GTTTGTGACAAAGTACAGTTGTATT.......................................................................25200.10200020
......................................................................................................................................................................................................TTAGTGCATCTGATTTGGTG-AA.......................................22200.10200020
.......................................................CCACTTGACATCCTGCCGTCGTGA.....................................................................................................................................................................................24200.10202000
....................................................................................................................................................TATGCTAGGTTA-GTTGTTTGTGACAAAG...................................................................................28200.10201010
....................................................................TGCCGTCGTGATCGTTTGGGTTAGTT......................................................................................................................................................................26200.10202000
...................................TATTTTGGGCACGCCGTCGG.............................................................................................................................................................................................................20100.10100010
...................................TATTTTGGGCACGCCGTCGGC............................................................................................................................................................................................................21100.10100010
..................................................................................................................................TGATTGTATTTCTAGTCATATGCTAGGT......................................................................................................28200.10202000
........................................................................................................................................................................................................AGTGCATCTGATTTGGTG-AAGCCGCTT................................27200.10202000
.................................................................................................................................................TCATATGCTAGGTTA-GTTGTTTGTGA........................................................................................26200.10200020
...................................................................................................................................................................................................TCTTTAGTGCATCTGATTTGGTG-AAG......................................26200.10202000
............................................................TGACATCCTGCCGTCGTGATCGTTTGGGT...........................................................................................................................................................................29200.10202000
.......................................................................................................................................................................TGTGACAAAGTACAGTTGTATTATAT...................................................................26200.10200020
...................................................................................................................................................................TGTTTGTGACAAAGTACAGTTGT..........................................................................23200.10200020
.............................................................GACATCCTGCCGTCGTGATCGTTTGG.............................................................................................................................................................................26200.10202000
.....................................................................................................................................TTGTATTTCTAGTCATATGCTAGGT......................................................................................................25200.10202000
.......................................................................................................................................................................................................TAGTGCATCTGATTTGGTG-AAGCCG...................................25200.10202000
.............................................................................................................................................................................................................ATCTGATTTGGTG-AAGCCGCT.................................21200.10202000
...............................................................CATCCTGCCGTCGTGATCGTT................................................................................................................................................................................21200.05101000
......................................................................................................................................................TGCTAGGTTA-GTTGTTTGTGACAAA....................................................................................25200.05101000
.......................................................CCACTTGACATCCTGCCGTCG........................................................................................................................................................................................21200.05100010
.............................................................................................................................................................................................................ATCTGATTTGGTG-AAGCCGCTT................................22200.05100010
............................................................TGACATCCTGCCGTCGTGAT....................................................................................................................................................................................20200.05100010
...................................................................CTGCCGTCGTGATCGTTTGGGTTA.........................................................................................................................................................................24200.05100100
.........................................................................................................................................................................................TATTATATTTTCTTTAGTGCATC....................................................23200.05101000
.....................................................GGCCACTTGACATCCTGCCGTCGT.......................................................................................................................................................................................24200.05100100
.........................................................................................................................................................TAGGTTA-GTTGTTTGTGACAAAGTACAGT.............................................................................29200.05101000
..........................................................................................................................................................AGGTTA-GTTGTTTGTGACAAAGTACAG..............................................................................27200.05101000
...........................................................TTGACATCCTGCCGTCGTGATC...................................................................................................................................................................................22200.05101000
..............................................................................................................................................................TA-GTTGTTTGTGACAAAGTACAGT.............................................................................24200.05101000
..................................................................................................................................................................TTGTTTGTGACAAAGTACAGTTGTA.........................................................................25200.05100010
.............................................................GACATCCTGCCGTCGTGATCGTT................................................................................................................................................................................23200.05101000
......................................................................................................................................................................................TTGTATTATATTTTCTTTAGTGCATC....................................................26200.05100010
........................................................CACTTGACATCCTGCCGTCGT.......................................................................................................................................................................................21200.05100010
.....................................................................................................................................................ATGCTAGGTTA-GTTGTTT............................................................................................18200.05100010
.......................................................................................................................................................................................................TAGTGCATCTGATTTGGTG-AAGCC....................................24200.05100010
....................................................................................................................................................................GTTTGTGACAAAGTACAGTTGT..........................................................................22200.05101000
..............................................................................................................................................................TA-GTTGTTTGTGACAAAGTACAGTTGT..........................................................................27200.05100010
.....................................................................................................................................................................................................TTTAGTGCATCTGATTTGGTG-AAG......................................24200.05101000
.............................................................GACATCCTGCCGTCGTGATCGTTTGGGT...........................................................................................................................................................................28200.05101000
.........................................................................................................................................................TAGGTTA-GTTGTTTGTGACAAAGTACA...............................................................................27200.05101000
....................................................CGGCCACTTGACATCCTGCCGTCGTGAT....................................................................................................................................................................................28200.05101000
......................................................................................................................................................................TTGTGACAAAGTACAGTTGTATTATA....................................................................26200.05100010
....................................................................................................TACAAGTGTTTGTTCCCACAACATG.......................................................................................................................................25200.05100010
.................................................CGTCGGCCACTTGACATCCTGCC............................................................................................................................................................................................23200.05101000
...................................................................................................................................................................TGTTTGTGACAAAGTACAGTTGTATTA......................................................................27200.05100010
.........................................................................................................................................................TAGGTTA-GTTGTTTGTGACAAAGTA.................................................................................25200.05101000
.....................................................................................................................................................................TTTGTGACAAAGTACAGTTGTATT.......................................................................24200.05100010
..................................................................................................................................TGATTGTATTTCTAGTCATATGCTAGG.......................................................................................................27200.05101000
.....................................................GGCCACTTGACATCCTGCCGTCG........................................................................................................................................................................................23200.05101000
......................................................................................................................................................TGCTAGGTTA-GTTGTTTGTGACAA.....................................................................................24200.05100010
..............................................................................................................................................TAGTCATATGCTAGGTTA-GTTGTTTGG..........................................................................................27200.05101000
................................................................................................................................................................................................................TGATTTGGTG-AAGCCGCTT................................19200.05101000
....................................................CGGCCACTTGACATCCTGCCGTCGT.......................................................................................................................................................................................25200.05101000
......................................................................................................................................TGTATTTCTAGTCATATGCTAGGTT.....................................................................................................25200.05101000
.....................................................................................................................................................................................GTTGTATTATATTTTCTTTAG..........................................................21200.05100010
...........................ATTATTATTATTTTGGGCA......................................................................................................................................................................................................................19200.05101000
.........................................................................................................................................................TAGGTTA-GTTGTTTGTGACAAAGTACAG..............................................................................28200.05101000
...........................................................................................................................................................................................TTATATTTTCTTTAGTGCATCTGAT................................................25200.05101000
...............................................................................................................................................................A-GTTGTTTGTGACAAAGTACAGT.............................................................................23200.05101000
.........................................................ACTTGACATCCTGCCGTCGTGA.....................................................................................................................................................................................22200.05101000
..........................................................CTTGACATCCTGCCGTCGTGATCGT.................................................................................................................................................................................25200.05101000
..........................................................................CGTGATCGTTTGGGTTAGTTT.....................................................................................................................................................................21200.05100010
..................................................................................................................................................................................................TTCTTTAGTGCATCTGATTTGGTG-AA.......................................26200.05100010
.................................................................TCCTGCCGTCGTGATCGTTTGGG............................................................................................................................................................................23200.05100010
.......................................................................................................................................................................................................TAGTGCATCTGATTTGGTG-AAGC.....................................23200.05101000
.................................................................................................................................................................GTTGTTTGTGACAAAGTACAGTTG...........................................................................24200.05100010
......................................................................................................................................................................................................TTAGTGCATCTGATTTGGTG-A........................................21200.05100001
...................................................TCGGCCACTTGACATCCTGCCGTCGTGAT....................................................................................................................................................................................29200.05101000
............................................................TGACATCCTGCCGTCGTGA.....................................................................................................................................................................................19200.05100100
..........................................................................................................................................................................GACAAAGTACAGTTGTATTATATTT.................................................................25200.05101000
......................................................................................................................................................................................................TTAGTGCATCTGATTTGGTG-AAGCCGCT.................................28200.05101000
.................................................................................................................................................................GTTGTTTGTGACAAAGTACAGT.............................................................................22200.05101000
....................................................................................................TACAAGTGTTTGTTCCCA..............................................................................................................................................18200.05101000
......................................................................................................................................................TGCTAGGTTA-GTTGTTTGTGA........................................................................................21200.05100100
droPer2
GAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------GCCG-AACCTGCCATGGACAGACCCGACATTTTACGAAAGCTCACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
GAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------GCCG-AACCTGCCATGGACA..........................2430.331010000
..C---------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------------------------------------------GCCG-AACCTGCCATGGACAGACC......................2630.331010000
.........................................................................................................................................................................T--------------------------------------------GCCG-AACCTGCCATGGACAGAC.......................2330.331010000
droAna3
TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATAAGTCGGATTGGAAAGGATTGTATTTAGCGGATCCCAATTTCGATAAACCTGGTCGAATTGACCTGGT-----TA--TTGG----TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................CCAATTTCGATAAACCTGGTCGA.............................23120.081100000
.....................................................................................................................................................................................................................................GAATTGACCTGGT-----TA--TTGG----T20160.061000001
...........................................................................................................................................................................AATAAGTCGGATTGGAAAGG.....................................................................20200.051000010
....................................................................................................................................................................................................ATTTAGCGGATCCCAATTTCGA..........................................22200.051001000
droBip1
CGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTT-----AT--TAG-----GSizeHit CountTotal NormTotal
No Reads
droFic1
TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTGGCGGACCCGAAATTCTATGAGAGTGCACAGATAGACGTGTT-----AA--TTG-----GSizeHit CountTotal NormTotal
No Reads
droEle1
TTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
ATA---------------------------------------------------------------------------------------------------------------------------------------------------TATTAATTTGTGATGTTAGCAATAAAGTTAACATATAATATGTTTTCTTCAGCATATCTAAGCTTGTA-----------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--CCGGTCTTASizeHit CountTotal NormTotal
No Reads
droYak3
GAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGACATGGT-----GA--TAGGTG--TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 05/17/2015 at 10:37 PM