ID:

dwi_28

 Coordinate:

scf2_1100000004902:11961230-11961312 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.9 -37.9 -37.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGTTTTTATTCAAGTTACACCGAAACAAAAAAGAAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTTTAAAGTGCATTTCCGATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACAATGACGACATAAAAGTGAATTAAAAGTG

***********************************....(((((((((..((((.(((((...((((((((((......((((((((...)))).)))).........))))))))))...)))))))))..)))).))).)).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M020

head

 M045

female body

 V119

head

 V118

embryo

 V117

male body
..............................................................................................................GAAGCTCGTCTCTACAGGTATCT.................................................. 23 0 1 13100.00 13100 5337 3042 2404 1799 518
..............................................................................................................GAAGCTCGTCTCTACAGGTATC................................................... 22 0 1 6121.00 6121 5474 367 167 59 54
..................................................TACCCTGTAGTTCCGGGCTTTTG.............................................................................................................. 23 0 1 705.00 705 247 385 19 48 6
..............................................................................................................GAAGCTCGTCTCTACAGGTAT.................................................... 21 0 1 313.00 313 87 149 51 7 19
...............................................................................................................AAGCTCGTCTCTACAGGTATCT.................................................. 22 0 1 286.00 286 3 164 78 37 4
.................................................CTACCCTGTAGTTCCGGGCTTTTG.............................................................................................................. 24 0 1 271.00 271 23 182 9 55 2
..............................................................................................................GAAGCTCGTCTCTACAGGTATCC.................................................. 23 1 1 222.00 222 213 3 4 2 0
..................................................TACCCTGTAGTTCCGGGCTTTT............................................................................................................... 22 0 1 143.00 143 76 63 3 0 1
..................................................TACCCTGTAGTTCCGGGCTTT................................................................................................................ 21 0 1 92.00 92 57 34 0 0 1
.................................................CTACCCTGTAGTTCCGGGCTT................................................................................................................. 21 0 1 83.00 83 42 38 1 0 2
...................................................ACCCTGTAGTTCCGGGCTTTTG.............................................................................................................. 22 0 1 75.00 75 5 67 0 3 0
..............................................................................................................GAAGCTCGTCTCTACAGGGATCT.................................................. 23 1 1 69.00 69 48 6 12 2 1
.................................................CTACCCTGTAGTTCCGGGCTTT................................................................................................................ 22 0 1 61.00 61 22 37 2 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTATCTT................................................. 24 1 1 53.00 53 22 14 11 4 2
..............................................................................................................GAAGCTCGTCTCTACAGGTATCG.................................................. 23 1 1 48.00 48 47 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTACATGTATCT.................................................. 23 1 1 43.00 43 33 1 2 7 0
..............................................................................................................GAAGCTCGTCTCTACAGGTA..................................................... 20 0 1 42.00 42 31 9 0 0 2
..............................................................................................................TAAGCTCGTCTCTACAGGTATCT.................................................. 23 1 1 36.00 36 3 5 17 11 0
..............................................................................................................GAAGCTCGTCTCTACAGGT...................................................... 19 0 1 32.00 32 24 4 3 0 1
.................................................CTACCCTGTAGTTCCGGGCTTTT............................................................................................................... 23 0 1 31.00 31 13 11 2 5 0
..................................................TACCCTGTAGTTCCGGGCTTTTGT............................................................................................................. 24 0 1 30.00 30 19 7 1 2 1
..............................................................................................................GAAGCTCGTCTCTACAGGCATCT.................................................. 23 1 1 28.00 28 10 1 8 7 2
..............................................................................................................GAAGCTCGTCTCTACAGTTATCT.................................................. 23 1 1 28.00 28 16 3 5 4 0
..............................................................................................................GAAGCTCGTCTCTACAGGAATCT.................................................. 23 1 1 25.00 25 8 2 9 4 2
..................................................TACCCTGTAGTTCCGGGCTT................................................................................................................. 20 0 1 22.00 22 18 4 0 0 0
.................................................CTACCCTGTAGTTCCGGGCT.................................................................................................................. 20 0 1 21.00 21 17 3 1 0 0
..............................................................................................................GAAGCTCGTCTATACAGGTATCT.................................................. 23 1 1 17.00 17 0 9 7 1 0
..............................................................................................................GAAGCTCGTCTGTACAGGTATCT.................................................. 23 1 1 17.00 17 1 14 1 1 0
..............................................................................................................GAAGCTCGCCTCTACAGGTATCT.................................................. 23 1 1 16.00 16 3 1 8 4 0
..............................................................................................................GAAGCTCGTCTCTACAGGGATC................................................... 22 1 1 16.00 16 14 0 1 0 1
..............................................................................................................GAATCTCGTCTCTACAGGTATCT.................................................. 23 1 1 15.00 15 3 5 4 3 0
..............................................................................................................GAAGATCGTCTCTACAGGTATCT.................................................. 23 1 1 15.00 15 0 1 11 3 0
...............................................................................................................AAGCTCGTCTCTACAGGTATC................................................... 21 0 1 15.00 15 0 14 1 0 0
..............................................................................................................AAAGCTCGTCTCTACAGGTATCT.................................................. 23 1 1 15.00 15 6 5 4 0 0
..............................................................................................................GAAGCTCGTCTCGACAGGTATCT.................................................. 23 1 1 14.00 14 14 0 0 0 0
..............................................................................................................GAAGCTCGTCCCTACAGGTATCT.................................................. 23 1 1 13.00 13 3 3 4 2 1
................................................................................................................AGCTCGTCTCTACAGGTATCT.................................................. 21 0 1 13.00 13 0 12 1 0 0
..............................................................................................................GAAGCTCGTCTCTACAGCTATCT.................................................. 23 1 1 13.00 13 4 3 4 2 0
..............................................................................................................CAAGCTCGTCTCTACAGGTATCT.................................................. 23 1 1 12.00 12 2 3 7 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTATCTG................................................. 24 1 1 12.00 12 11 1 0 0 0
..............................................................................................................GAAGCTCGTATCTACAGGTATCT.................................................. 23 1 1 12.00 12 0 0 10 2 0
..............................................................................................................GAAGCTCGTCTCAACAGGTATCT.................................................. 23 1 1 12.00 12 11 0 1 0 0
..............................................................................................................TAAGCTCGTCTCTACAGGTATC................................................... 22 1 1 11.00 11 11 0 0 0 0
...................................................ACCCTGTAGTTCCGGGCTTTT............................................................................................................... 21 0 1 11.00 11 1 9 0 1 0
..............................................................................................................GAAGCTCATCTCTACAGGTATCT.................................................. 23 1 1 11.00 11 1 0 4 5 1
..............................................................................................................GAAGCTCGTCTCTACAGGTATCA.................................................. 23 1 1 11.00 11 4 4 2 1 0
...................................................ACCCTGTAGTTCCGGGCTTT................................................................................................................ 20 0 1 10.00 10 2 8 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGATATCT.................................................. 23 1 1 10.00 10 4 1 2 3 0
..............................................................................................................GAAGCTCGTCTCTACAGGTATAT.................................................. 23 1 1 10.00 10 0 1 7 2 0
.............................................................................................................CGAAGCTCGTCTCTACAGGTATCT.................................................. 24 1 1 10.00 10 0 0 2 7 1
..............................................................................................................GAAGCTCGTCTCTACAGG....................................................... 18 0 1 10.00 10 2 8 0 0 0
..............................................................................................................GAATCTCGTCTCTACAGGTATC................................................... 22 1 1 10.00 10 9 1 0 0 0
..............................................................................................................GAAGCTCGTCTCAACAGGTATC................................................... 22 1 1 10.00 10 10 0 0 0 0
..............................................................................................................GAAGCTCGTCTCGACAGGTATC................................................... 22 1 1 9.00 9 9 0 0 0 0
..............................................................................................................GAAGCTCGGCTCTACAGGTATC................................................... 22 1 1 9.00 9 9 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACGGGTATCT.................................................. 23 1 1 9.00 9 2 2 3 2 0
..............................................................................................................GAAGCTCGTCTCTAAAGGTATCT.................................................. 23 1 1 9.00 9 2 1 5 1 0
..............................................................................................................GAAGCTCGTCTCTACCGGTATCT.................................................. 23 1 1 9.00 9 3 0 3 3 0
.............................................................................................................AGAAGCTCGTCTCTACAGGTAT.................................................... 22 0 1 9.00 9 0 2 4 3 0
..................................................................................................................CTCGTCTCTACAGGTATCT.................................................. 19 0 1 8.00 8 1 5 2 0 0
.................................................CTACCCTGTAGTTCCGGGCTTTTGT............................................................................................................. 25 0 1 8.00 8 4 2 0 2 0
..............................................................................................................GAACCTCGTCTCTACAGGTATCT.................................................. 23 1 1 8.00 8 3 2 0 2 1
..............................................................................................................GACGCTCGTCTCTACAGGTATCT.................................................. 23 1 1 8.00 8 0 0 5 3 0
..............................................................................................................GAAGCTCGTCTCTACACGTATCT.................................................. 23 1 1 8.00 8 2 2 3 1 0
..............................................................................................................GAAGCTCGTCTCTAAAGGTATC................................................... 22 1 1 7.00 7 6 0 1 0 0
..............................................................................................................GCAGCTCGTCTCTACAGGTATCT.................................................. 23 1 1 7.00 7 0 0 2 5 0
..............................................................................................................GAAGCTCGTCTCTGCAGGTATCT.................................................. 23 1 1 7.00 7 3 0 4 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTACCT.................................................. 23 1 1 7.00 7 3 0 2 1 1
..............................................................................................................GAGGCTCGTCTCTACAGGTATCT.................................................. 23 1 1 7.00 7 2 1 2 2 0
..............................................................................................................GAAACTCGTCTCTACAGGTATCT.................................................. 23 1 1 7.00 7 2 1 2 2 0
..................................................TACCCTGTAGTTCCGGGCTTTTGG............................................................................................................. 24 1 1 7.00 7 6 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAAGTATC................................................... 22 1 1 7.00 7 6 0 1 0 0
..............................................................................................................GAAGCTTGTCTCTACAGGTATCT.................................................. 23 1 1 6.00 6 2 1 1 2 0
..............................................................................................................GAAGCCCGTCTCTACAGGTATCT.................................................. 23 1 1 6.00 6 0 0 3 2 1
..............................................................................................................GAAGCTCGTCTCTACAGGCATC................................................... 22 1 1 6.00 6 6 0 0 0 0
..................................................TACCCTGTAGTTCCGGGCT.................................................................................................................. 19 0 1 6.00 6 6 0 0 0 0
..............................................................................................................GAAGCTCCTCTCTACAGGTATCT.................................................. 23 1 1 6.00 6 1 2 1 2 0
..............................................................................................................GAAGCTCGTCTCTACATGTATC................................................... 22 1 1 6.00 6 5 1 0 0 0
..............................................................................................................GAAGCTCTTCTCTACAGGTATCT.................................................. 23 1 1 6.00 6 1 0 2 3 0
..............................................................................................................GAAGCTCGTCTCTACAAGTATCT.................................................. 23 1 1 6.00 6 3 0 3 0 0
....................................................CCCTGTAGTTCCGGGCTTTTG.............................................................................................................. 21 0 1 6.00 6 0 6 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGAATC................................................... 22 1 1 5.00 5 4 1 0 0 0
...............................................................................................................AAGCTCGTCTCTACAGGTAT.................................................... 20 0 1 5.00 5 0 5 0 0 0
..............................................................................................................GAAGCTCGTTTCTACAGGTATCT.................................................. 23 1 1 5.00 5 0 1 3 1 0
.................................................CTACCCTGTAGTTCCGGGCTTTTGA............................................................................................................. 25 1 1 5.00 5 3 2 0 0 0
..............................................................................................................GAAGCTCATCTCTACAGGTATC................................................... 22 1 1 5.00 5 4 0 1 0 0
..............................................................................................................GAAGCTCGTCTCCACAGGTATCT.................................................. 23 1 1 5.00 5 3 2 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGGATCC.................................................. 23 2 1 5.00 5 5 0 0 0 0
..............................................................................................................GAAGGTCGTCTCTACAGGTATCT.................................................. 23 1 1 5.00 5 4 0 1 0 0
..............................................................................................................GAAGCTCGTCTCCACAGGTATC................................................... 22 1 1 5.00 5 5 0 0 0 0
..............................................................................................................GAAGTTCGTCTCTACAGGTATC................................................... 22 1 1 4.00 4 3 0 0 0 1
..............................................................................................................GAAGCTCGTCTCTACAGGTCTCT.................................................. 23 1 1 4.00 4 0 0 3 1 0
.........................................................................TTTTAAAGTGCATTTCCGATG......................................................................................... 21 0 1 4.00 4 0 0 4 0 0
..............................................................................................................GGAGCTCGTCTCTACAGGTATCT.................................................. 23 1 1 4.00 4 3 1 0 0 0
..............................................................................................................GAAGCTCGCCTCTACAGGTATC................................................... 22 1 1 4.00 4 4 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTCCAGGTATCT.................................................. 23 1 1 4.00 4 0 0 3 0 1
..............................................................................................................GAAGCTAGTCTCTACAGGTATCT.................................................. 23 1 1 4.00 4 0 0 1 3 0
..............................................................................................................GAAGCTCGTCTCTACAGGTGTCT.................................................. 23 1 1 4.00 4 2 0 1 1 0
.................................................CTACCCTGTAGTTCCGGGCC.................................................................................................................. 20 1 1 4.00 4 4 0 0 0 0
...............................................................................................................GAACTCGTCTCTACAGGTATCT.................................................. 22 2 1 4.00 4 2 1 0 1 0
..............................................................................................................GAAGCTCGGCTCTACAGGTATCT.................................................. 23 1 1 4.00 4 4 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTTCAGGTATCT.................................................. 23 1 1 4.00 4 1 1 0 0 2
..............................................................................................................GAAGCTCGTCTCTACAGGTATT................................................... 22 1 1 4.00 4 4 0 0 0 0
..............................................................................................................GAAGCACGTCTCTACAGGTATCT.................................................. 23 1 1 3.00 3 0 1 1 1 0
..............................................................................................................GAAGCTCGTCACTACAGGTATCT.................................................. 23 1 1 3.00 3 1 1 1 0 0
..............................................................................................................GAAGCTCGTCTCTACACGTATC................................................... 22 1 1 3.00 3 3 0 0 0 0
...................................................ACCCTGTAGTTCCGGGCTTTTGT............................................................................................................. 23 0 1 3.00 3 1 2 0 0 0
.................................................CTACCCTGTAGTTCCGGTCTTTTG.............................................................................................................. 24 1 1 3.00 3 3 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACTGGTATCT.................................................. 23 1 1 3.00 3 0 2 1 0 0
..............................................................................................................GAACCTCGTCTCTACAGGTATC................................................... 22 1 1 3.00 3 2 1 0 0 0
..............................................................................................................GAAGCGCGTCTCTACAGGTATCT.................................................. 23 1 1 3.00 3 2 0 1 0 0
.................................................................................................................GCTCGTCTCTACAGGTATCT.................................................. 20 0 1 3.00 3 0 2 1 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGC...................................................... 19 1 1 3.00 3 3 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGTTATC................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................TACCCTGTAGTTCCGCGCTTTT............................................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACGGGTATC................................................... 22 1 1 3.00 3 3 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTATTT.................................................. 23 1 1 3.00 3 0 0 1 2 0
..................................................TACCCTGTAGTTCCGGGCTTTTGA............................................................................................................. 24 1 1 3.00 3 2 1 0 0 0
...............................................................................................................AAGCTCGTCTCTACAGGTATCTT................................................. 23 1 1 2.00 2 0 2 0 0 0
..............................................................................................................GTAGCTCGTCTCTACAGGTATCT.................................................. 23 1 1 2.00 2 0 0 1 1 0
..................................................TACCCTGTAGTTCCGGGCTTTTT.............................................................................................................. 23 1 1 2.00 2 1 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTATA................................................... 22 1 1 2.00 2 1 0 1 0 0
..................................................TACCCTGTAGTTCCGGCTTTTG............................................................................................................... 22 3 1 2.00 2 2 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTAC.................................................... 21 1 1 2.00 2 2 0 0 0 0
..............................................................................................................GAAGCTTGTCTCTACAGGTATC................................................... 22 1 1 2.00 2 1 0 0 0 1
..................................................TACCCTGTAGTTCCTGGCTTTTG.............................................................................................................. 23 1 1 2.00 2 2 0 0 0 0
...............................................................................................................AAGCTCGTCTATACAGGTATCT.................................................. 22 1 1 2.00 2 0 0 2 0 0
..............................................................................................................GAAGCTCGTCTATACAGGTATC................................................... 22 1 1 2.00 2 1 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTAA.................................................... 21 1 1 2.00 2 0 2 0 0 0
..............................................................................................................GAAACTCGTCTCTACAGGTATC................................................... 22 1 1 2.00 2 1 0 1 0 0
..................................................TACCCTGTAGTTCCGGGCTTTC............................................................................................................... 22 1 1 2.00 2 1 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGATATC................................................... 22 1 1 2.00 2 0 0 2 0 0
..............................................................................................................GAAGCTCGTCTCTACAGTTATCC.................................................. 23 2 1 2.00 2 2 0 0 0 0
.................................................ATACCCTGTAGTTCCGGGCTTTTG.............................................................................................................. 24 1 1 2.00 2 0 2 0 0 0
...............................................................................................................AAGCTCGTCTCAACAGGTATCT.................................................. 22 1 1 2.00 2 0 1 1 0 0
..............................................................................................................GAAGCTCGACTCTACAGGTATCT.................................................. 23 1 1 2.00 2 0 0 1 1 0
..............................................................................................................GAAGCTCGTCTCTACAGCTATC................................................... 22 1 1 2.00 2 2 0 0 0 0
..............................................................................................................GGAGCTCGTCTCTACAGGTATC................................................... 22 1 1 2.00 2 2 0 0 0 0
.............................................................................................................GGAAGCTCGTCTCTACAGGTATCT.................................................. 24 1 1 2.00 2 0 2 0 0 0
.................................................CTACCCTGTAGGTCCGGGCTTTTG.............................................................................................................. 24 1 1 2.00 2 0 2 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTAGCT.................................................. 23 1 1 2.00 2 0 0 0 1 1
..............................................................................................................GAAGCTCGTCTCTACAGGTATGT.................................................. 23 1 1 2.00 2 1 1 0 0 0
................................................................................................................AGCTCGTCTCTACAGGTATC................................................... 20 0 1 2.00 2 1 1 0 0 0
..................................................TACCTTGTAGTTCCGGGCTTTT............................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..............................................................................................................GAAGCTCGTCTTTACAGGTATCT.................................................. 23 1 1 2.00 2 1 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTATAGGTATC................................................... 22 1 1 2.00 2 2 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTGCAGGTATC................................................... 22 1 1 2.00 2 2 0 0 0 0
..............................................................................................................GAAGCTCGTCCCTACAGGTATC................................................... 22 1 1 2.00 2 2 0 0 0 0
..............................................................................................................GAAGCTCGTCTATACAGGTAT.................................................... 21 1 1 2.00 2 0 2 0 0 0
..............................................................................................................CAAGCTCGTCTCTACAGGTATC................................................... 22 1 1 2.00 2 1 0 0 1 0
..............................................................................................................GAAGCTCGTCTCTAAAGTTATCT.................................................. 23 2 1 1.00 1 0 0 1 0 0
..............................................................................................................GAAGCTCGTCTCTAGAGGTATC................................................... 22 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGACTCTACGGGTATCT.................................................. 23 2 1 1.00 1 0 0 1 0 0
.............................................................................................................AGAAGCTCGTCTCTACAGGTTT.................................................... 22 1 1 1.00 1 0 0 0 1 0
..............................................................................................................GAAGCTCGTCTCTACAGGTAACT.................................................. 23 1 1 1.00 1 0 0 1 0 0
..............................................................................................................GATGCTCGTCTCTACAGGTATCT.................................................. 23 1 1 1.00 1 0 0 1 0 0
..............................................................................................................TAAGCTCGTCTCTACAGGTATCG.................................................. 23 2 1 1.00 1 1 0 0 0 0
.................................................CTACCCTGTAGTTCCGGGCTTC................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACACTTATCT.................................................. 23 2 1 1.00 1 1 0 0 0 0
..................................................TACCCTGTAGTTCCGGGCTTTTGAA............................................................................................................ 25 2 1 1.00 1 1 0 0 0 0
.............................................................................................................AGAAGCTCGTCTCTACAGGTATCT.................................................. 24 0 1 1.00 1 0 0 0 0 1
..............................................................................................................GAAGCTCGTCTCTACAACTATCT.................................................. 23 2 1 1.00 1 0 0 0 1 0
..............................................................................................................GAAGTTCGTCTCTACAGGTATCT.................................................. 23 1 1 1.00 1 0 0 1 0 0
.................................................CTACCCTGTGGTTCCGGGCTTTTG.............................................................................................................. 24 1 1 1.00 1 0 1 0 0 0
...............................................................................................................AAGCTCGTCTCTACAGGCATCT.................................................. 22 1 1 1.00 1 0 0 1 0 0
...........................................................................................................TCAGAAGCTCGTCTCTACAGGA...................................................... 22 1 1 1.00 1 0 1 0 0 0
...........................................................................................................TATGAAGCTCGTCTCTACAGGTATCT.................................................. 26 2 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTAAC................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................CTACCCTGTAATTCCGGGCTTTTG.............................................................................................................. 24 1 1 1.00 1 0 0 1 0 0
.................................................CTACCCTGTAGTTCCGGGCTTTTGG............................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTTCAGGTATC................................................... 22 1 1 1.00 1 1 0 0 0 0
..............................................................................................................TAAACTCGTCTCTACAGGTATC................................................... 22 2 1 1.00 1 0 0 1 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTACTT.................................................. 23 2 1 1.00 1 0 0 1 0 0
..................................................TACCCTGTAGTTCCGGGCTC................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0
.............................................................................................................TGAAGCTCGTCTCTACAGGTATC................................................... 23 1 1 1.00 1 0 1 0 0 0
..............................................................................................................TAATCTCGTCTCTACAGGTATCT.................................................. 23 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AAGCTCGTCTCTACAGGTATCTG................................................. 23 1 1 1.00 1 0 1 0 0 0
..............................................................................................................TAAGCTCGTCTCTACAGGCATC................................................... 22 2 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTTTCTACAGGTATC................................................... 22 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTTTCT.................................................. 23 1 1 1.00 1 1 0 0 0 0
..............................................................................................................CAAGCTCGTCTCGACAGGTATCT.................................................. 23 2 1 1.00 1 1 0 0 0 0
..................................................TACACTGTAGTTCCGGGCTTT................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
..................................................TACCCTGGAGTTCCGGGCTTT................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
..................................................TACCCTGTAGTTCCGGGCCTTTGG............................................................................................................. 24 2 1 1.00 1 1 0 0 0 0
..................................................TACCCTGTAGTTCCGGGTTTTTG.............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.....................................................CCTGTAGTTCCGGGCTTTTG.............................................................................................................. 20 0 1 1.00 1 0 1 0 0 0
...................................................ACCCTGTAGTTCCGGGCTT................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0
...............................................................................................................AAGCTCGTCTCTACAGGTA..................................................... 19 0 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGAGATCT.................................................. 23 2 1 1.00 1 0 0 0 0 1
.................................................CTACCCTGTAGTTCCGGGCTTTAG.............................................................................................................. 24 1 1 1.00 1 0 0 0 1 0
...........................................................................................................CTCGAAGCTCGTCTCTACAGGTATCT.................................................. 26 3 1 1.00 1 0 1 0 0 0
......................................................CTGTAGTTCCGGGCTTTTG.............................................................................................................. 19 0 1 1.00 1 0 1 0 0 0
..................................................TACCCTGTAGTACCGGGCTTTT............................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTAGTCTCTACAGGTATC................................................... 22 1 1 1.00 1 0 0 1 0 0
..............................................................................................................GAAGCTCGTCTCTACAAGGATCT.................................................. 23 2 1 1.00 1 0 0 0 0 1
..................................................TACCCTGTAGTTCCGGGCTCTTG.............................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGTTCGTCTCTACAGGAATCT.................................................. 23 2 1 1.00 1 0 0 1 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGAAT.................................................... 21 1 1 1.00 1 0 0 1 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGG...................................................... 19 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GCAGCTCGTCTCTACAGGCATC................................................... 22 2 1 1.00 1 0 0 0 1 0
..............................................................................................................GAAGCTTGTCTCTACATGTATC................................................... 22 2 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCCAAAGGTATCTT................................................. 24 3 1 1.00 1 0 0 1 0 0
.................................................CTACCCTTTAGTTCCGGGCTT................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0
..............................................................................................................TAAGCTCGTCTCTACAGCTATC................................................... 22 2 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGGTCGTCTCTACAGGTATC................................................... 22 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCAACAGGT...................................................... 19 1 1 1.00 1 1 0 0 0 0
..................................................TACCCTGTAGTTCCGGGCTTC................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTAG.................................................... 21 1 1 1.00 1 1 0 0 0 0
...................................................ACCCTGTAGTTCCGGGCTTTTGC............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
..................................................TACCCTGTAGTGCCGGGCTTTTG.............................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
...............................................................................................................AAGCTCGTCTCGACAGGTATC................................................... 21 1 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGAATCC.................................................. 23 2 1 1.00 1 1 0 0 0 0
..............................................................................................................GAGGCTCGTCTCTACAGGTATT................................................... 22 2 1 1.00 1 1 0 0 0 0
...................................................ACCCTGTAGTTGCGGGCTTTTG.............................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGCCTCTACAGGTATCTT................................................. 24 2 1 1.00 1 0 0 1 0 0
..................................................TACCCTGTAGTTACGGGCTTTTGT............................................................................................................. 24 1 1 1.00 1 1 0 0 0 0
.................................................CTACCCTGTAGTTCCGGGCG.................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGCATCC.................................................. 23 2 1 1.00 1 1 0 0 0 0
.........................................................................................................TATCAGAAGCTCGTCTCTACAGGTAT.................................................... 26 0 1 1.00 1 0 0 1 0 0
..............................................................................................................GATGCTCGTCTCTACAGGTATC................................................... 22 1 1 1.00 1 0 0 1 0 0
................................................................................................................AGCTCGTCTCTACAGGCATCT.................................................. 21 1 1 1.00 1 0 1 0 0 0
..............................................................................................................TAAGCTCGTCTCTACAGTTATCT.................................................. 23 2 1 1.00 1 0 0 1 0 0
...............................................................................................................AAGCTCGTCTCTACAGGAATCT.................................................. 22 1 1 1.00 1 0 0 1 0 0
.................................................CTATCCTGTAGTTCCGGGCTTTT............................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................TACCCTGTAGTTGCGGGCTTT................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
..............................................................................................................CAAGCTCGTCTTTACAGGTATCT.................................................. 23 2 1 1.00 1 0 0 1 0 0
..................................................TACCCTGTAGTTCCGGGCTTTTGC............................................................................................................. 24 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AAGCTCGCCTCTACAGGTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0
...............................................................................................................AAGTTCGTCTCTACAGGTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0
...............................................................................................................AATCTCGTCTCTACAGGTATCT.................................................. 22 1 1 1.00 1 0 1 0 0 0
.................................................CTACCCTGTAGTACCGGGCTT................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTATAGGT...................................................... 19 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCCACAGGTATCG.................................................. 23 2 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACTGGTATC................................................... 22 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCCCTACAGGAATCT.................................................. 23 2 1 1.00 1 0 0 1 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTATCTA................................................. 24 1 1 1.00 1 0 0 0 1 0
.................................................CTACCCTGTAGTTCCGGG.................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
..............................................................................................................GGAGCTCGTCTCTACAGATATCT.................................................. 23 2 1 1.00 1 1 0 0 0 0
.............................................................................................................TGAAGCTCGTCTCTACAGGTATCT.................................................. 24 1 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTAGAGGTATCT.................................................. 23 1 1 1.00 1 1 0 0 0 0
...................................................ACACTGTAGTTCCGGGCTTTTG.............................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTATCTC................................................. 24 0 1 1.00 1 0 0 0 1 0
.............................................................................................................CGAAGCTCGTCTCTACAGGAATCT.................................................. 24 2 1 1.00 1 0 1 0 0 0
...........................................................................................................GGTGAAGCTCGTCTCTACAGGTATCT.................................................. 26 3 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGTCTCAACAGGAATCT.................................................. 23 2 1 1.00 1 1 0 0 0 0
.................................................CTACCCTGTAGTTCCGGGCTTTTA.............................................................................................................. 24 1 1 1.00 1 1 0 0 0 0
..................................................TACCCTGTAGTTCCGGGATTT................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
..................................................TACCCTGTATTTCCGGGCTTTT............................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................AAGCTCGTCTCTGCAGGTAT.................................................... 20 1 1 1.00 1 0 1 0 0 0
..................................................TATCCTGTAGTTCCGGGCTTTTGT............................................................................................................. 24 1 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTCCAGATATCT.................................................. 23 2 1 1.00 1 0 0 1 0 0
...............................................................................................................GAGCTCGTCTCTACAGGTATC................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................GATCTCGTCTCTACAGGTATCT.................................................. 22 2 1 1.00 1 0 1 0 0 0
...............................................................................................................AAGCTCGTCTCTACAGGTACCT.................................................. 22 1 1 1.00 1 0 0 1 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTTC.................................................... 21 2 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTACC................................................... 22 1 1 1.00 1 1 0 0 0 0
.............................................................................................................AGAAGCTCGTCTCTACAGGTATC................................................... 23 0 1 1.00 1 1 0 0 0 0
...................................................ACCCTGTAGTTACGGGCTTTTG.............................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
................................................TCTACCCTGTAGTTCCGGGCTTT................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0
..................................................TACCATGTAGTTCCGGGCTTTTG.............................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCACGTCTCTACAGGTATC................................................... 22 1 1 1.00 1 0 0 1 0 0
..............................................................................................................TAAGCTCGTCTCTACAGGTAT.................................................... 21 1 1 1.00 1 0 0 1 0 0
..............................................................................................................GAAGCTCGTCTCAACAGGTAT.................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................CTGTAGTTCCGGGCTTTT............................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
...............................................................................................................AAGCCCGTCTCTACAGGTATCT.................................................. 22 1 1 1.00 1 0 0 1 0 0
..................................................TAGCCTGTAGTTCCGGGCTTTT............................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
.................................................CTACACTGTAGTTCCGGGCTTTTG.............................................................................................................. 24 1 1 1.00 1 0 0 0 1 0
...................................................ACCCTGTAGTTCCTGGCTTTT............................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.................................................CAACCCTGTAGTTCCGGGCTTTTG.............................................................................................................. 24 1 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTGCAGGTAT.................................................... 21 1 1 1.00 1 0 1 0 0 0
.................................................CTACCCTGTAGATCCGGGCTTTTG.............................................................................................................. 24 1 1 1.00 1 0 1 0 0 0
.............................................................................................................CGAAGCTCGTCTCTACAGGTATC................................................... 23 1 1 1.00 1 1 0 0 0 0
.............................................................................................................AGAAGCTCGTCTCTACAGGTA..................................................... 21 0 1 1.00 1 0 0 0 1 0
..............................................................................................................GAAGCTCGTCCCTACAGGTATCG.................................................. 23 2 1 1.00 1 1 0 0 0 0
..............................................................................................................GAAGCTCGTCTCTACAGGTATCTTG................................................ 25 2 1 1.00 1 0 1 0 0 0
..................................................TACCCTGTAGTCCCGGGCTTTTG.............................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
..................................................TACCCTGTAGTTCCGGGCCTTTG.............................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
...................................................................................................................TCGTCTCTACAGGTATCT.................................................. 18 0 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGTATCTACAGGTATC................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................CTACCCTGTAGTTCCGTGCTTTTGA............................................................................................................. 25 2 1 1.00 1 0 1 0 0 0
.................................................CTACCCTGTAGTTGCGGGCTT................................................................................................................. 21 1 1 1.00 1 0 0 0 0 1
....................................................TCCTGTAGTTCCGGGCTTTT............................................................................................................... 20 1 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGTCTATACAGGTATCTG................................................. 24 2 1 1.00 1 0 1 0 0 0
..............................................................................................................GAAGCTCGCATCTACAGGTATCT.................................................. 23 2 1 1.00 1 0 0 1 0 0
.............................................................................................................GTAAGCTCGTCTCTACAGGTATCT.................................................. 24 2 1 1.00 1 0 1 0 0 0
..............................................................................................................TAAGCTCGCCTCTACAGGTATCT.................................................. 23 2 1 1.00 1 0 0 1 0 0
..............................................................................................................GAAGCTGGTCTCTACAGGTATCT.................................................. 23 1 1 1.00 1 0 0 1 0 0
...............................................................................................................GAACTCGTCTCTACAGGTATC................................................... 21 2 1 1.00 1 1 0 0 0 0
.................................................CTACCCTGTAGTTTCGGG.................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0
........................................................................................................ATATCAGAAGCTCGTATC............................................................. 18 2 3 0.33 1 0 1 0 0 0
..............................................................................................................GAAGCTCGTCTCTACATATCT.................................................... 21 3 4 0.25 1 1 0 0 0 0
...........................................TGTGAACTTCCCTGTAGTT......................................................................................................................... 19 3 20 0.20 4 0 1 0 3 0
.........................................................................................................TATCAGAAGCTCGTATCAG........................................................... 19 3 20 0.05 1 0 1 0 0 0
.......................AACAACAAAGAAACCGCT.............................................................................................................................................. 18 2 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

ACAAAAATAAGTTCAATGTGGCTTTGTTTTTTCTTTTGCGAGGGCACTGGATGGGACATCAAGGCCCGAAAACAAAATTTCACGTAAAGGCTACGGTAACAGTTAATAGTCTTCGAGCAGAGATGTCCATAGAGTGTCCCATCTTTCTTTGTTGTTACTGCTGTATTTTCACTTAATTTTCAC

***********************************....(((((((((..((((.(((((...((((((((((......((((((((...)))).)))).........))))))))))...)))))))))..)))).))).)).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V118

embryo

 V117

male body		 M045

female body

 M020

head

 V119

head
............................................................................................ACGGGAATAGTTAATAGTC........................................................................ 19 2 3 0.33 1 0 1 0 0 0
............................................CACTTGAAGGGACATCAA......................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0
..........................................GACACTTGAAGGGACATCAA......................................................................................................................... 20 3 8 0.25 2 2 0 0 0 0
...........................................ACACTTGAAGGGACATCAA......................................................................................................................... 19 3 20 0.20 4 4 0 0 0 0
...................................................................................................CAGTAAGTTGTCTTCGAGCA................................................................ 20 3 13 0.15 2 0 0 0 2 0
...............................................................................TCACTTAAAGGTCACGGTAA.................................................................................... 20 3 20 0.10 2 0 0 0 0 2

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004902:11961180-11961362 + dwi_28 confident TGTTTT---TATTCAAGTTACACCGAAACAAAA--------------------------------------------------------------AAGAAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTTTAAAGTGCATTTCCGATG------------CCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AA-----------TGA----------CG-ACATAAAA-------------------GTGAATT--AA-------------------------A---AGT---------G
droVir3 scaffold_13047:6141844-6141969 - dvi-mir-993 Known_mirbase AA------------------------------------------------------------------------------------------TAACAG-AAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATT-C-AA-----------ATGCCATTCTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC---------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:16546128-16546301 - dmo_35 confident A--------------------------------------------------------------------------------------------AACAG-AAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATA-C-GA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCAAACTCAGCTTAATGAATACGCGAATCGCAAATAAAA------------------CGTGA-------------------------------AA---AGT---------G
droGri2 scaffold_14906:11483317-11483525 - dgr_16 confident TGTTTTATGTCTTTAAGCTGCAGCAACCCAAAGCCGGGGCTCGGAGGGGCAGCGAAGT-----GA-------------AGT-----GATA---TTCAG-AAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTAGTGCATT-C-AA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--GA-----------AT------------------AAAA-------------------ATCAAGT--GCA----------------------------------------A
dp5 2:19773763-19773963 - dps-mir-993 Known_mirbase CGGTT--------------AT--C--AACTACA-------------------------ATGCAGAATACAGCCCTGTGCGTGATCGGATCTTTGATTG-CAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCC-C-GATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--TC-----------TG-------------------AAA-------------------GTGA-------------------------------AA---AAT---------G
droPer2 scaffold_3:2522167-2522378 - dpe_345 confident TGGCTC---TCTTCCGGTTAT--C--AACTACA-------------------------AAGCAGAATACAGCCCTGTGCGTGATCGGATCTTTGATTG-CAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCT-C-GATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--TC-----------TG-------------------AAA-------------------GTGA-------------------------------AA---AAT---------G
droAna3 scaffold_13340:5446701-5446858 - dan_322 confident TG-------------------------------------------------------------------------------------------------AAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGTT-C-GATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AT-----------TT------------------CGAA-------------------GTGA-------------------------------AA---AATGATTGATACG
droBip1 scf7180000396708:3367353-3367485 + TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTATTGCGTT-C-------------------------GATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AT-----------TT-------------------CAA-------------------GTGA-------------------------------GA---AATAATTGATGTG
droKik1 scf7180000302619:315356-315526 + AG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTC-C-GA-----TGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--TA-----------TG-------------------AAAGTGA------------------AAAT--GAAGA----AAAGTTAAACCAAGTGC-GGGAAAA---------T
droFic1 scf7180000453835:35394-35551 + TC------------------------------------------------------------------------------------------CAATTG-CAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATGCCGCGTT-C-GACGCACTGTCGCACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AC-----------CG-------------------AAA-------------------GTGAACT--GAAA----------------------------TT---------A
droEle1 scf7180000491278:1385233-1385373 + TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAATGGCGTT-C-GATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGC--GC-----------TC-------------------AAA-------------------GTG--------------------------------------------------
droRho1 scf7180000769958:357-523 + TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAACGGCGTT-C-GGTGCATTGCCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGC--GC-----------TG-------------------AAAGTGATATCAAAGTGAGAGTGTCA-------------------------------AA---AAT---------C
droBia1 scf7180000302155:2068190-2068343 - TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAACTGCGTT-C-GATGCA-TGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AC-----------CG-------------------GAA-------------------GTGAACT--GAGT----------------------------TT------TGAG
droTak1 scf7180000414682:65313-65469 + TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AT-----------TA-------------------C-C-------------------GTGAACT--GATG---------TTA----------AA---AGT---------G
droEug1 scf7180000408928:14374-14537 - TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTT-C-GATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AT-----------TC-------------------GAA-------------------GTGAACTCTGAAGTCTAGAAAGT-------------------T-------G-T
dm3 chr3R:2602052-2602202 + dme-mir-993 Known_mirbase TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GGCACATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTC--AA-----------TA-------------------TGA-------------------GTGAACT--GAAG-----------------------------T---------A
droSim2 3r:2496138-2496289 + dsi-mir-993 Known_mirbase TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTC--AA-----------TG------------------AAAA-------------------GTGAACT--GAAG-----------------------------T---------A
droSec2 scaffold_6:2693189-2693341 + dse_361 confident TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTTTC-GGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTC--AA-----------TG------------------AAAA-------------------GTGAACT--GAAG-----------------------------T---------A
droYak3 3R:7811338-7811488 - dya_20 confident TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GACGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTC--AA-----------GA-------------------CAA-------------------GTGAACT--GAAG-----------------------------T---------A
droEre2 scaffold_4770:2845897-2846028 + der_245 confident TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GACGC-TTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTC--AA-----------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TGTTTT---TATTCAAGTTACACCGAAACAAAA--------------------------------------------------------------AAGAAAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTTTAAAGTGCATTTCCGATG------------CCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AA-----------TGA----------CG-ACATAAAA-------------------GTGAATT--AA-------------------------A---AGT---------GSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................23113100.00131005337304251817992404
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................2216121.00612154743675459167
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................231705.0070524738564819
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................211313.003138714919751
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................221286.00286316443778
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................241271.00271231822559
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC....................................................................................................................................231222.002222133024
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................221143.001437663103
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................21192.00925734100
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................21183.00834238201
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................22175.0075567030
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................22161.00612237002
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................24153.005322142411
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG....................................................................................................................................23148.0048471000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................20142.0042319200
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................19132.0032244103
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................23131.00311311052
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................24130.0030197121
...................................................................................................................TACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................20122.0022184000
..................................................................................................................CTACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................20121.0021173001
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................21115.0015014001
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT....................................................................................................................................21113.0013012001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG...................................................................................................................................24112.0012111000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................21111.001119010
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................23111.001144012
....................................................................................................................ACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................20110.001028000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................18110.001028000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT......................................................................................................................................2219.00902034
...............................................................................................................................................................................................CTCGTCTCTACAGGTATCT....................................................................................................................................1918.00815002
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2518.00842020
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2417.00761000
...................................................................................................................TACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................1916.00660000
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2116.00606000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................2015.00505000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2515.00532000
..........................................................................................................................................TTTTAAAGTGCATTTCCGATG------------...........................................................................................................................................................................2114.00400004
..................................................................................................................CTACCCTGTAGTTCCGGGCC................................................................................................................................................................................................................2014.00440000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.....................................................................................................................................2214.00440000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2313.00312000
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATCT....................................................................................................................................2013.00302001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGC........................................................................................................................................1913.00330000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2413.00321000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT...................................................................................................................................2312.00202000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2312.00211000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.....................................................................................................................................2212.00210001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC......................................................................................................................................2112.00220000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA......................................................................................................................................2112.00202000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTC.............................................................................................................................................................................................................2212.00211000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.....................................................................................................................................2012.00211000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTC..............................................................................................................................................................................................................2211.00110000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGAA..........................................................................................................................................................................................................2511.00110000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2411.00100100
........................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGA........................................................................................................................................2211.00101000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2511.00110000
...................................................................................................................TACCCTGTAGTTCCGGGCTC...............................................................................................................................................................................................................2011.00110000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTG...................................................................................................................................2311.00101000
......................................................................................................................CCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2011.00101000
....................................................................................................................ACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................1911.00101000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.......................................................................................................................................1911.00101000
.......................................................................................................................CTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................1911.00101000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGG........................................................................................................................................1911.00110000
...................................................................................................................TACCCTGTAGTTCCGGGCTTC..............................................................................................................................................................................................................2111.00110000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAG......................................................................................................................................2111.00110000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2311.00110000
..................................................................................................................CTACCCTGTAGTTCCGGGCG................................................................................................................................................................................................................2011.00110000
......................................................................................................................................................................................TATCAGAAGCTCGTCTCTACAGGTAT......................................................................................................................................2611.00100001
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2411.00110000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA...................................................................................................................................2411.00100010
..................................................................................................................CTACCCTGTAGTTCCGGG..................................................................................................................................................................................................................1811.00110000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC...................................................................................................................................2411.00100010
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTA............................................................................................................................................................................................................2411.00110000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTTC......................................................................................................................................2111.00101000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATC.....................................................................................................................................2311.00110000
.......................................................................................................................CTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................1811.00110000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTA.......................................................................................................................................2111.00100010
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTG..................................................................................................................................2511.00101000
................................................................................................................................................................................................TCGTCTCTACAGGTATCT....................................................................................................................................1811.00101000
droVir3
AA------------------------------------------------------------------------------------------TAACAG-AAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATT-C-AA-----------ATGCCATTCTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC---------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................23110605.001060590611202251388010001000092433522050836829304358280002025250200121002400001133151316178470183823113110023729191067176561629363751
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................2213852.003852101412034091060000000000106484083582405613300000000200000000011000021225163263837138480001100360133500200
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2311147.001147151733110000000000010660531227753012913900010001000001200000000000000001001039100000009021101001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................211681.006814621181000000000005534263140260418500000110200000000000000000000000000013433000000022000000010
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................241618.0061838205700000000006941205128330437500000100100000000000000000001010000485100300007000100011
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................221265.0026582511210000000000108123840168000000001000001000000000000011000001022000000040000000001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC....................................................................................................................................231203.002033478085000000000000000001300000000000000001000000000000000000000100000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................231188.001885267810000000000695432056000000000000000000000000000000101014001000000029000001000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................221177.001771087100200000001075141250151400100000000000000000000000000000000010000000002000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................221176.00176111320000000000092352008600000000000000000000000000000000000015100000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................211156.0015681281000000000009135320102000000000000000000000000000001000013022000000011000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................221143.00143985900000000000674251075000000000000000000000000000101040205010000010013000200000
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................211123.0012314244310000000000741130023000000000000000000000000000000200010033000000011000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................24189.0089742020000000000861526081000000000000000000000000000000000000102200000005000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................20174.00741313260000000000030203001000000000000000000000000000000000000105300000004000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................20149.004967180000000000000102202000000000000000000000000000000000001003000000007000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................19148.0048613101000000000010012001400000000000000000000000000000000000002100000006000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................23146.00460020000000000031487509600000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG....................................................................................................................................23137.0037121800000000000001001000100000000000000000000000000000000000101000000002000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................20135.003542150000000000000010000000000000000000000000000000000000001100000000002000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................21127.002700250000000000000020000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................21126.002610180000000000011200000000000000000000000000000000000000000000000000003000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................23123.002310100000000000031001100300000000000000000000000000000000000001100000001000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................24119.00190310000000000012000103200000000000000000000000000000000000101100000003000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG...................................................................................................................................24113.00135350000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................25112.00122011000000000010020000000000000000000000000000000010000000100000000021000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................20112.00120080000000000020100000000000000000000000000000000000000000001000000000000000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................20111.00110080000000000000000000000000000000000000000000000000000000100000000002000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................18110.00105040000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT....................................................................................................................................2119.0090180000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2119.0090080000000000010000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2319.0090020000000000011120000100000000000000000000000000000000000010000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.....................................................................................................................................2218.0080230000000000020010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT......................................................................................................................................2218.0080020000000000000021000100000000000000000000000000001000000001000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2418.0080010000000000000021201100000000000000000000000000000000000000000000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2415.0051000000000000000000000100000000000000000000000000000010000000000000002000000000
...............................................................................................................................................................................................CTCGTCTCTACAGGTATCT....................................................................................................................................1914.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCC................................................................................................................................................................................................................2014.0040400000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC...................................................................................................................................2414.0040010000000000000002000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA......................................................................................................................................2113.0031010000000000001000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................1813.0030200000000000001000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC....................................................................................................................................2213.0030102000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2513.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................1913.0030110000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.....................................................................................................................................2213.0030010000000000001000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATCT....................................................................................................................................2013.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT..................................................................................................................................2513.0030020000000000010000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTAT......................................................................................................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA...................................................................................................................................2412.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2512.0021000000000000000000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................1912.0020010000000000010000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATC.....................................................................................................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................1912.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................1912.0022000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCA................................................................................................................................................................................................................2012.0021100000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................1812.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTG.............................................................................................................................................................................................................2312.0020000000000000001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCG................................................................................................................................................................................................................2012.0021000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC......................................................................................................................................2112.0021001000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGC........................................................................................................................................1912.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCC................................................................................................................................................................................................................1912.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTC............................................................................................................................................................................................................2412.0020001000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGG..................................................................................................................................................................................................................1812.0020000000000000010000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTGT............................................................................................................................................................................................................2311.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTA............................................................................................................................................................................................................2311.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTG.............................................................................................................................................................................................................2211.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTCC...........................................................................................................................................................................................................2411.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2411.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGA........................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.....................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTG..............................................................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGAAA-........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................CCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGT........................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
A--------------------------------------------------------------------------------------------AACAG-AAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATAGTGCATA-C-GA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAACTCAAACTCAGCTTAATGAATACGCGAATCGCAAATAAAA------------------CGTGA-------------------------------AA---AGT---------GSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................23111045.0011045452729421730743271373
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................2211737.00173758633545914154
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC....................................................................................................................................231921.0092100019182
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................211869.008696043405113158
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................241555.00555431211716664
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................231507.00507415179144210
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................221276.00276249354105
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................221114.0011410501161
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................21196.00968202291
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................21188.00886908542
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................23179.00797000072
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................22176.00767400020
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................20172.007235065521
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................22171.00716003341
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................24150.0050222121310
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................21139.00393601020
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................20134.00343400000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................19132.003215022013
...................................................................................................................TACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................20124.00242400000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................25120.0020630155
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC...................................................................................................................................24120.00201100162
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................23117.00171001015
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................24115.0015900024
....................................................................................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................21115.00151500000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT....................................................................................................................................21110.0010900010
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT......................................................................................................................................2219.009410004
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC....................................................................................................................................2218.008000080
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.....................................................................................................................................2217.007100024
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG....................................................................................................................................2316.006100050
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................1816.006401010
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2415.005400001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.....................................................................................................................................2215.005101030
..................................................................................................................CTACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................2015.005301100
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA......................................................................................................................................2115.005000203
....................................................................................................................ACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................2015.005500000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC......................................................................................................................................2114.004000130
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG...................................................................................................................................2414.004400000
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2114.004400000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2414.004202000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2514.004000040
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT..................................................................................................................................2513.003100110
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATAC....................................................................................................................................2313.003000030
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2313.003200010
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.......................................................................................................................................1913.003300000
..................................................................................................................CTACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................1913.003100020
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATTC....................................................................................................................................2312.002000020
...............................................................................................................................................................................................CTCGTCTCTACAGGTATC.....................................................................................................................................1812.002200000
...................................................................................................................TACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................1812.002200000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2412.002200000
...............................................................................................................................................................................................CTCGTCTCTACAGGTATCT....................................................................................................................................1912.002200000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTGG.............................................................................................................................................................................................................2312.002200000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2312.002200000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTG.............................................................................................................................................................................................................2212.002100010
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATCT....................................................................................................................................2012.002100010
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2412.002000020
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA...................................................................................................................................2412.002200000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT...................................................................................................................................2311.001100000
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATC.....................................................................................................................................1911.001100000
.........................................................................................................................................................................................CAGAAGCTCGTCTCTACAGGTA.......................................................................................................................................2211.001000001
......................................................................................................................................................TA-C-GA-----------ATGCCATTGTCAATTATCA...........................................................................................................................................................2411.001000010
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTG...................................................................................................................................2311.001100000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATGCG...................................................................................................................................2411.001100000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGT........................................................................................................................................1811.001100000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTGC..................................................................................................................................2511.001100000
...................................................................................................................TACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATCC....................................................................................................................................2011.001000010
......................................................................................................................CCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................1911.001100000
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.....................................................................................................................................2011.001100000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATG.....................................................................................................................................2211.001100000
droGri2
TGTTTTATGTCTTTAAGCTGCAGCAACCCAAAGCCGGGGCTCGGAGGGGCAGCGAAGT-----GA-------------AGT-----GATA---TTCAG-AAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTAGTGCATT-C-AA-----------ATGCCATTGTCAATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--GA-----------AT------------------AAAA-------------------ATCAAGT--GCA----------------------------------------ASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................231605.0060556540
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................22169.0069627
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................24159.0059572
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................23158.0058553
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................22146.0046460
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................21121.0021201
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................21120.0020182
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................22116.0016160
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................22113.0013130
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................23112.0012111
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................2018.00880
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................2418.00871
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................2215.00550
..................................................................................................................CTACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................2014.00431
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................2114.00440
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................1913.00330
..................................................................................................................CTACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................1913.00330
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................2112.00220
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2412.00211
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT....................................................................................................................................2112.00220
....................................................................................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................2112.00220
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATCT....................................................................................................................................2011.00110
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2511.00110
.....................................................................................................................CCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................2011.00110
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................2011.00110
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTC............................................................................................................................................................................................................2111.00110
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT......................................................................................................................................2211.00101
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................1811.00110
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2311.00110
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................2311.00101
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.......................................................................................................................................1911.00110
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2111.00110
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2411.00110
...............................................................................................................................................................................................CTCGTCTCTACAGGTATCT....................................................................................................................................1911.00110
........................................................................................................................TGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................1811.00110
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2511.00101
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCG....................................................................................................................................2211.00110
....................................................................................................................ACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................1911.00110
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG...................................................................................................................................2411.00110
..........................................GGAGGGGCAGCGAAGT-----CT-------------........................................................................................................................................................................................................................................................................1850.20110
dp5
CGGTT--------------AT--C--AACTACA-------------------------ATGCAGAATACAGCCCTGTGCGTGATCGGATCTTTGATTG-CAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCC-C-GATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--TC-----------TG-------------------AAA-------------------GTGA-------------------------------AA---AAT---------GSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................23110270.0010270118701713136043143645080032
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................2212063.00206312811272683621151850130
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................231831.008314706111123621058
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................241775.007750661133252990134
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC....................................................................................................................................231522.0052212342175020000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................211510.00510143331831533004
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................221509.005090433198141817000
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................211304.00304927515085001
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................211146.00146413810012000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................221132.00132282732507024
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................221130.00130212021021002
..................................................................................................................CTACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................20183.008386702013002
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................23181.008126333042004
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................22176.007607010010004
...................................................................................................................TACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................20170.007006601030000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................21160.006005701002000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................20154.005414700014001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................24146.004613331152000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT....................................................................................................................................21136.003603501000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................20124.002402400000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................19124.002401821012000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................23114.00140920030000
..................................................................................................................CTACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................19112.00121901010000
....................................................................................................................ACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................20111.001101100000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................24111.00111510021001
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................25111.00110620000003
....................................................................................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................2119.0090900000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2418.0081600000001
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2317.0070310000030
...................................................................................................................TACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................1916.0060600000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC......................................................................................................................................2116.0060015000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC....................................................................................................................................2216.0060042000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................1815.0050410000000
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATCT....................................................................................................................................2015.0050410000000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.....................................................................................................................................2015.0050500000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG...................................................................................................................................2414.0040400000000
....................................................................................................................ACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................1914.0040400000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG....................................................................................................................................2314.0040021001000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC...................................................................................................................................2413.0030201000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.....................................................................................................................................2213.0030012000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA......................................................................................................................................2113.0030300000000
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2113.0030300000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT......................................................................................................................................2213.0030100002000
.......................................................................................................................CTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................1913.0030200000001
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2413.0030300000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTT.......................................................................................................................................2013.0030300000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATC.....................................................................................................................................2313.0030300000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2412.0020100100000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTC..............................................................................................................................................................................................................2212.0020011000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAG..........................................................................................................................................1712.0020000000002
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT...................................................................................................................................2312.0020200000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2312.0020110000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2412.0020100100000
..................................................................................................................CTACCCTGTAGTTCCGGG..................................................................................................................................................................................................................1812.0021001000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT..................................................................................................................................2512.0020010001000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA...................................................................................................................................2412.0020101000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.....................................................................................................................................2212.0020200000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATAC....................................................................................................................................2312.0020011000000
........................................................................................................................TGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................1811.0010100000000
................................................................................................................................................................................................TCGTCTCTACAGGTATCT....................................................................................................................................1811.0010100000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTG..............................................................................................................................................................................................................2111.0010100000000
..................................................................................................................CTACCCTGTAGTTCCGGGCC................................................................................................................................................................................................................2011.0011000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGTTT-........................................................................................................................................................................................................2611.0010000000001
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTA.............................................................................................................................................................................................................2311.0010100000000
..................................................................................................................CTACCCTGTAGTTCCGGGA.................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................ACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................1811.0010100000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGA........................................................................................................................................1911.0010000010000
.................................................................................................................CCTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................2211.0010100000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2511.0010001000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGTT..........................................................................................................................................................................................................2511.0010001000000
..............................................................................................................................................................................................GCTCGTCTCTACAGGTAT......................................................................................................................................1811.0010100000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTC.............................................................................................................................................................................................................2211.0010001000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTG...................................................................................................................................2311.0010100000000
.................................................................................................................CCTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2511.0010100000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2311.0010100000000
......................................................................................................................CCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2611.0010000001000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTG.............................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................CGTCTCTACAGGTATCT....................................................................................................................................1711.0010000000001
...............................................................................................................................................................................................CTCGTCTCTACAGGTATC.....................................................................................................................................1811.0010100000000
..................................................................................................................CTACCCTGTAGTTCCGGGTA................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................CTCGTCTCTACAGGTATCT....................................................................................................................................1911.0010100000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTG..................................................................................................................................2511.0010100000000
droPer2
TGGCTC---TCTTCCGGTTAT--C--AACTACA-------------------------AAGCAGAATACAGCCCTGTGCGTGATCGGATCTTTGATTG-CAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGCT-C-GATGTATTTTCGAGTGTTTGTGTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--TC-----------TG-------------------AAA-------------------GTGA-------------------------------AA---AAT---------GSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2313263.003263560115275239398839
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................221682.0068228318154171101
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................211185.001851800133556
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................231159.001592478127218
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................241146.00146882515315
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................221108.00108065910195
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................21143.0043101304142
..................................................................................................................CTACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................20136.00361690281
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC....................................................................................................................................23123.00231901120
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................23123.00236110141
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................22116.00160121111
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................22115.0015572100
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................23113.0013091300
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................24112.0012230232
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................21112.0012150330
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................20111.0011030035
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................21110.00100100000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................22110.0010090010
..................................................................................................................CTACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................1918.008440000
...................................................................................................................TACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................2018.008240011
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................1918.008510011
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT....................................................................................................................................2117.007070000
..................................................................................................................CTACCCTGTAGTTCCGGGCC................................................................................................................................................................................................................2017.007700000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG....................................................................................................................................2316.006600000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2416.006500100
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................2015.005050000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.....................................................................................................................................2214.004010012
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................1814.004310000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT......................................................................................................................................2213.003000201
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2513.003210000
...............................................................................................................................................................................................CTCGTCTCTACAGGTATCT....................................................................................................................................1912.002020000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................2112.002020000
...................................................................................................................TACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................1912.002020000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA...................................................................................................................................2412.002020000
..................................................................................................................CTACCCTGTAGTTCCGGG..................................................................................................................................................................................................................1812.002200000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2512.002100010
....................................................................................................................ACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................2011.001010000
...................................................................................................................TACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................1811.001010000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAG......................................................................................................................................2111.001000010
..........................................................................................................................................TTT-ATATTGCGCT-C-GATGTATTTTCG...............................................................................................................................................................................2611.001000001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTC.......................................................................................................................................2011.001000010
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTA.......................................................................................................................................1811.001010000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTA............................................................................................................................................................................................................2311.001000100
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATC.....................................................................................................................................1911.001010000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2511.001000100
...................................................................................................................TACCCTGTAGTTCCGGGCTTTG.............................................................................................................................................................................................................2211.001010000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC...................................................................................................................................2411.001000100
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATG.....................................................................................................................................2211.001010000
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2111.001010000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT...................................................................................................................................2311.001010000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA......................................................................................................................................2111.001000001
droAna3
TG-------------------------------------------------------------------------------------------------AAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATTGCGTT-C-GATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AT-----------TT------------------CGAA-------------------GTGA-------------------------------AA---AATGATTGATACGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2317558.0075584651436242044721771
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................2212046.0020461359133259127366
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................2111367.0013679929139147179
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................241380.0038028890402221
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................221372.00372278804379
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................231314.00314265612589
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................201142.00142941062417
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC....................................................................................................................................231140.0014031350101
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................21189.008970301123
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................21181.0081533010105
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................24179.007934201834
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................21166.00666300102
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................22150.00503710831
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................20148.00484800000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................23146.00462950552
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................19141.00412310269
..................................................................................................................CTACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................20139.003917207211
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................22136.00362500542
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................22134.00343400000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................23125.00251710025
...................................................................................................................TACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................20123.00231600520
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT....................................................................................................................................21114.00141400000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.....................................................................................................................................22113.0013900112
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................24113.0013520231
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT......................................................................................................................................22110.0010300232
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG....................................................................................................................................2319.009210015
....................................................................................................................ACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................2018.008800000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAG......................................................................................................................................2117.007000133
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2516.006000240
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.......................................................................................................................................1916.006300003
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATCT....................................................................................................................................2016.006510000
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2115.005500000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................1815.005400001
....................................................................................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................2114.004400000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA...................................................................................................................................2414.004300001
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTAT......................................................................................................................................1914.004400000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA......................................................................................................................................2113.003100002
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT..................................................................................................................................2513.003300000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2313.003300000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2513.003300000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2413.003200010
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC......................................................................................................................................2113.003010020
..............................................................................................................................................................................................GCTCGTCTCTACAGGTAT......................................................................................................................................1813.003300000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2413.003200001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG...................................................................................................................................2413.003300000
..................................................................................................................CTACCCTGTAGTTCCGGGCTA...............................................................................................................................................................................................................2113.003100101
............................................................................................................................................................................................AAGCTCGTCTCTACAGGT........................................................................................................................................1812.002200000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCG....................................................................................................................................2212.002200000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.....................................................................................................................................2012.002200000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTG.............................................................................................................................................................................................................2212.002200000
.......................................................................................................................CTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................1912.002200000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTG..............................................................................................................................................................................................................2212.002200000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.....................................................................................................................................2212.002100010
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2312.002200000
....................................................................................................................ACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................1912.002200000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT...................................................................................................................................2312.002100001
...................................................................................................................TACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................1912.002200000
...............................................................................................................................................TATTGCGTT-C-GATGCATTGTCG...............................................................................................................................................................................2211.001000010
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATG.....................................................................................................................................2211.001100000
...............................................................................................................................................................................................CTCGTCTCTACAGGTATCT....................................................................................................................................1911.001100000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTG.............................................................................................................................................................................................................2311.001000100
................................................................................................................................................................................................TCGTCTCTACAGGTATCT....................................................................................................................................1811.001100000
........................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGTA.......................................................................................................................................2311.001000010
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGGC.......................................................................................................................................2011.001000100
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC....................................................................................................................................2211.001010000
.....................................................................................................................CCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................1911.001100000
...................................................................................................................TACCCTGTAGTTCCGGGCTTG..............................................................................................................................................................................................................2111.001000001
...................................................................................................................TACCCTGTAGTTCCGGGCTTTA.............................................................................................................................................................................................................2211.001000100
droBip1
TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TTATTGCGTT-C-------------------------GATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AT-----------TT-------------------CAA-------------------GTGA-------------------------------GA---AATAATTGATGTGSizeHit CountTotal NormTotal
No Reads
droKik1
AG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTC-C-GA-----TGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--TA-----------TG-------------------AAAGTGA------------------AAAT--GAAGA----AAAGTTAAACCAAGTGC-GGGAAAA---------TSizeHit CountTotal NormTotal
No Reads
droFic1
TC------------------------------------------------------------------------------------------CAATTG-CAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATGCCGCGTT-C-GACGCACTGTCGCACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AC-----------CG-------------------AAA-------------------GTGAACT--GAAA----------------------------TT---------ASizeHit CountTotal NormTotal
No Reads
droEle1
TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAATGGCGTT-C-GATGCATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGC--GC-----------TC-------------------AAA-------------------GTG--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAACGGCGTT-C-GGTGCATTGCCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAGC--GC-----------TG-------------------AAAGTGATATCAAAGTGAGAGTGTCA-------------------------------AA---AAT---------CSizeHit CountTotal NormTotal
No Reads
droBia1
TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-TAACTGCGTT-C-GATGCA-TGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AC-----------CG-------------------GAA-------------------GTGAACT--GAGT----------------------------TT------TGAGSizeHit CountTotal NormTotal
No Reads
droTak1
TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AT-----------TA-------------------C-C-------------------GTGAACT--GATG---------TTA----------AA---AGT---------GSizeHit CountTotal NormTotal
No Reads
droEug1
TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-ATATGGCGTT-C-GATGCATTGTCGGACTGCTGCCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACAAC--AT-----------TC-------------------GAA-------------------GTGAACTCTGAAGTCTAGAAAGT-------------------T-------G-TSizeHit CountTotal NormTotal
No Reads
dm3
TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GGCACATTGTCGGACTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTC--AA-----------TA-------------------TGA-------------------GTGAACT--GAAG-----------------------------T---------ASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................23138041.0038041000061310056516422406006800001000191763067912010000101034000102000035929422400000000000000000002091851117511650014612064928083498651283173166246928852340163753304012683336661631154715268224414828411446393493637735600000000000230000000700000000000000011321358010193167277217679129362211531000002052001200000100000000000000000034191867817117000132002211700182264700129812701351003215716500221019701002860002220005050000230638924046238347396151120020452814837851213517830900042620002647466131306634634426001240
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................2214041.004041000011610023140100200000000002247512300000000001010000000001131000000000000000000020022607160012511413885378303265683964642520901121102561211061151901806727026833340000000000000000000000000000000000008390058007158255267013212000002600000000000000000000000000000000030001050000100051202138300034170150006918000202800000500200001000000004458468601444190201006206592000031160100001900036936511664135000110
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................2112649.002649000064000011100000200000000021284310000000000000001000000063403400000000000000000010012907600041153751411323122211712201110150377522010019302062802533731000000000000000000002000000000000000951600600067501342113019680000021300000000000000000000000000000000010010100020000320102110008110400012700000140000080000100010000000261324660014304000024015290000043000002200036126365211921100000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2311174.00117400000100010000000000001000002020200000000000001000000000002000000000000000000000002301860001312318992510126205010021163603127605070811711312000000000020000000002000000000000000516706910182102023833914000008400000000000000000000000000001000100000000000100122509000002960800037500052104001102711000000000010004812711884010000130212000006000000000001741921020300
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2411070.0010700000000001010000000000100000413614100000000000200000000000101000000000000000000000130141000002330514736011042300000017350511110102020213400000000000010000000100000000000000044580407015161584134621320000026000000000000000000000000000021000000000000000002444010000019605000314800061850000011001000000000000041037058740100009061100000950000001000413541988000120
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................221485.00485000010000000000000000000000000147000000000000000000000000403000000000000000000000100500001040013071114900010001111050130401070010000000000000010000000000000000000000010110120012100200140200000002700000000000000000000000000000000000000000000000210410000990600011200000600000200013000100000001117152814510000003096000005100000030001186011105000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................221404.00404000010000000000000000000000000450000000000001000000000000000000000000000000000002000000020571551029001225400000108130150810304121123800000000000000000000000000000000000015400540036040110121000008000000000000000000000000000000000001101000000000001100001120300000000010230000000000000000000000101000110000001303200000600000010001121000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCATC..................................................................................................................................251277.00277000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021166000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................231242.0024200000000000000000000000000000113100000000000000000000000000000000000000000000000000000000010024180000350001000100007063030212031240000000000000000000000000000000000002228017204311075600000020000000000000000000000000000000000000000000000010000000032010000120001011000001000000000000000010030030000000801200000600000000001010200000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................201185.0018500000000000000000000000000014152122000000000000000000000523000000000000000000000110000001021023140010120002000000000011000100032130000000000000000000000000000000000004803310315440820000060000000000000000000000000000000000000000000610000000000014000000000000020000000000000000000000412300010000001023000000000000000081650002000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................191179.0017900000000000000000000000000007300000000000000000000000000003000000000000000000000000000000010001021100121000000000002000000000011810000000000000000000000000000000000000320210203083012800000400000000000000000000000000000000000000000000000000010000130000010000000200000100000000000000001025002001000050420000030000000000122220232000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................231172.00172000022000002100000000000000000000000000000000000000000000000000000000000000000001000000070030262150001106000040210008001010201010210000000000000000000000000000000000002707007201020400000018000000000000000000000000000000000000000000020000003000001000000010000000000000000000000000000012020010000000104200000500000010001241112000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................211108.0010800000000000000000000000000000000000000000000000000000000000000000000000000000000000000001023035010000418000000102010803000010103012000000000000000000000000000000000000460800110102020000001000000000000000000000000000000000000000000000000002100001100000000000003000000000000000000000000010000010000000100000000000000000200000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................241102.0010200001000010000000000000000000000000000000000000000000000000000000000000000000000000000000021001203001112100000200010000000010013011000000000000000000000000000000000000110000310003050000006000000000000000000000000000000001000000000031000100310001000000000000000000000000000000000000012010120000000100000000700000020001031210000100
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC....................................................................................................................................231101.0010100001000011000000000000000000000000000000000000000000000000000000000000000000000200000001300301102001180000000100001041000013020200000000000000000000000000000000000003400000103030400000013000000000000000000000000000000000000000000001000000100000000000000000002000001000000000000000000111010000000201200000000000020000120100000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG....................................................................................................................................23184.008400000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000010000000000000000060000000000101000000000000000000000000000000000000042020003010140270000002000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000200000000000202100000000000000000010002000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC...................................................................................................................................24177.0077000000000000000000000000000000000000000000000000000000001822210000000000000000000000000000000000000300001000000100000001100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000100000000000000000000000000000000000000000000000000000000000000000000000000000010100000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................22158.0058000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001300000000000000000002000010001001000000000000000000000000000000000000260710200004040000000000000000000000000000000000000000000000000000000000000003002000000000006000001000000000000000010010000010000000100000400000000000000100000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................24147.0047000011000000000000000000000000000000000000000000000000001010000000000000000000000000000000010002300000000000000000000000000001000000000000000000000000000000000000000240100010002020000000000000000000000000000000000000000000100000000000000000002000000001000104000001000000000000000002000031000000001300000200000000000000200000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.....................................................................................................................................22141.0041000011000000000000000000000000000000000000000000000000000000000000000000000000002000000000050010200014600000101000100001000001010000000000000000000000000000000000000100000000001030000002000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000010000000000000000000000000000000000100010000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................22140.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010100000200030000000000000001001000000000000000000000000000000000000000000000760200100100060000003000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000010000000000000000000000000000000000001000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................21137.0037000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000011000000000000000100000000000000110000000000000000000000000000000000000480100010001000000001000000000000000000000000000000000000000000000000000000001002000001000102000000000000000000000000000010000000200000000000000000001100100100000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT......................................................................................................................................22137.0037000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000010000500000000001000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000002320210000000100200000100000000000520013000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................18137.0037000000000000000040000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000010900000000000000000000000000000000000000000011101050110000002000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000100000000000000000110001000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................23129.0029000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000400000100000000000000000302000000001014000000000000000000000000000000000000020000000001000000000000000000000000000000000000000000000000000000001100000002000000200000200000000000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTC..................................................................................................................................25126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000215000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................21121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000001000000000000000000000000000000000000000220000010000000000002000000000000000000000000000000000000000000000000000100002101000000000000000000000000000000000020010000000000000000000000000000000010200000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT....................................................................................................................................24119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110201300100000100000010000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000020100000000000000000100000000000100000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.....................................................................................................................................22119.0019000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200006000000000000000000000100001000000000000000000000000000000000000200100010100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................20119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000001000000000000000000000000000000000000120200000003010000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000100000100000000001100000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA...................................................................................................................................24117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000092000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................25115.0015000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000003000000000000000000000000000000000000000000000000000000100000000000000001000000000010000000000000000000001000000000000000000200000000000200001000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................24114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000140000000000000000000000000000000000000000000000000000000000000000003000000000000000020000000000000000000000000000000000000000000001100000000000000000000000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................20112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101020000003000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000000000000000000000300000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2419.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000010000001000000000000000000001000000000000000000000000000000000000000000000100000000000000010000000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT....................................................................................................................................2118.008000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000001000000000000000000000000000000000000000000000000000000010000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCACAGG..............................................................................................................................2918.008000000000000000000000000000000000000000000000000000000003410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC......................................................................................................................................2118.008000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000100000000000000000000000000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................2118.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000110100000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCT..................................................................................................................................2517.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA......................................................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000010000000000000000000000000300000000000
droSim2
TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTC--AA-----------TG------------------AAAA-------------------GTGAACT--GAAG-----------------------------T---------ASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................23111421.00114215395210216593450192446830645135004001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................22110888.001088874582299728371232401890901002
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC...................................................................................................................................2411076.001076010047102600010100000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC....................................................................................................................................231553.005533481129110000000100000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................231543.005431407814074665009220900000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................201397.003976626411328500110000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................241374.003743845886945901232901500003
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................211342.0034215991217446001170401000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................181245.0024520330421400010000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................221244.0024414345121122700100111000
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................211227.00227132721410700010000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................231206.00206965234801100120100100
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................221163.00163745814411200000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG....................................................................................................................................231142.0014275392800000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................211134.001347136882900000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................201126.0012677294101500000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................191121.0012160214123300000000000
...................................................................................................................TACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................18156.0056201025100000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................20149.00492861311000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................19146.0046550003600000000000
..................................................................................................................CTACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................19134.0034321002800000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................22134.0034911150200000600000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................24133.0033198510000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................24125.0025183200100000000001
..................................................................................................................CTACCCTGTAGTTCCGGG..................................................................................................................................................................................................................18122.0022001021900000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................25121.0021451000000010100000
..................................................................................................................CTACCCTGTAGTTCCGGGCC................................................................................................................................................................................................................20120.0020145100000000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTC...................................................................................................................................23113.0013000001300000000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................22111.001120160100100000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................2319.00931220000100000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2519.00911700000000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................2118.00841020100000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGG........................................................................................................................................1917.00752000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC......................................................................................................................................2116.00651000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGC........................................................................................................................................1916.00624000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2315.00541000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2415.00514000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.....................................................................................................................................2215.00540010000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2415.00532000000000000000
...............................................................................................................................................................................................CTCGTCTCTACAGGTATC.....................................................................................................................................1814.00440000000000000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................2114.00401020100000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2414.00421100000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2513.00310200000000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.......................................................................................................................................1913.00300001200000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG...................................................................................................................................2413.00311010000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2513.00301200000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCC................................................................................................................................................................................................................1913.00330000000000000000
...........................................................................................................................................................GGCGCATTGTCGGATTGC.........................................................................................................................................................................1813.00310200000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTA.............................................................................................................................................................................................................2313.00321000000000000000
..............................................................................................................................................................GCATTGTCGGATTGCTGGCTCC..................................................................................................................................................................2212.00200200000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCG................................................................................................................................................................................................................1912.00211000000000000000
....................................................................................................................ACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................1812.00200001100000000000
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATC.....................................................................................................................................1912.00220000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTC..............................................................................................................................................................................................................2112.00220000000000000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................2012.00200110000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAG......................................................................................................................................2112.00202000000000000000
.......................................................................................................................CTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................1912.00200010000010000000
..................................................................................................................CTACCCTGTAGTTCCGGGCG................................................................................................................................................................................................................2012.00211000000000000000
...............................................................................................................................................................................................CTCGTCTCTACAGGTATCT....................................................................................................................................1912.00210100000000000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATC.....................................................................................................................................2312.00202000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTC..............................................................................................................................................................................................................2212.00220000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCAC.................................................................................................................................2611.00100000100000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTC...............................................................................................................................................................................................................2111.00110000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2411.00110000000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCA..................................................................................................................................2511.00100000100000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGA........................................................................................................................................1911.00110000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTC.............................................................................................................................................................................................................2211.00101000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTG.............................................................................................................................................................................................................2211.00101000000000000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTA.......................................................................................................................................2111.00100000100000000000
........................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGG.........................................................................................................................................2111.00110000000000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................2011.00100000100000000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGT........................................................................................................................................2011.00101000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGAA..........................................................................................................................................................................................................2611.00100010000000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGT.........................................................................................................................................1811.00110000000000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTA............................................................................................................................................................................................................2311.00100100000000000000
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2211.00101000000000000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAG..........................................................................................................................................1811.00100000100000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTAA............................................................................................................................................................................................................2311.00110000000000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTC.............................................................................................................................................................................................................2311.00110000000000000000
droSec2
TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTTTC-GGCGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAAGAAACCTC--AA-----------TG------------------AAAA-------------------GTGAACT--GAAG-----------------------------T---------ASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2313781.0037812143762347529
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................221491.00491321812168
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................241435.004352032817430
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................231319.00319173179930
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................211214.0021413457122
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................221162.0016211413728
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................22151.00512313510
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................20150.00502910110
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................23139.003919596
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................24130.003021306
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................21124.002415702
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................19123.002313604
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................22122.002221010
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................21121.002115312
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................21119.001916102
..................................................................................................................CTACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................20116.00169412
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................22116.001615100
...................................................................................................................TACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................2018.0087100
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................2318.0084112
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2417.0070061
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................1817.0077000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT....................................................................................................................................2116.0065001
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT......................................................................................................................................2216.0061500
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2516.0061131
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC....................................................................................................................................2315.0054001
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................2014.0044000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTA.......................................................................................................................................2114.0040301
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2313.0032100
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA......................................................................................................................................2113.0031200
..............................................................................................................................................................................................GCTCGTCTCTACAGGTATCT....................................................................................................................................2013.0033000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAG......................................................................................................................................2112.0022000
........................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGT........................................................................................................................................2212.0021100
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCTT...................................................................................................................................2312.0022000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................2112.0022000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2512.0020020
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2312.0020020
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2512.0020110
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.....................................................................................................................................2012.0022000
...................................................................................................................TACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................1912.0021010
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTA...................................................................................................................................2412.0022000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG....................................................................................................................................2311.0011000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCAA...................................................................................................................................2411.0010100
................................................................................................................................................................................................TCGTCTCTACAGGTATCT....................................................................................................................................1811.0011000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGT........................................................................................................................................2011.0010100
...............................................................................................................................................................CATTGTCGGATTGCTGGC.....................................................................................................................................................................1811.0010010
....................................................................................................................ACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................2011.0011000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTT.......................................................................................................................................2011.0011000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTA.............................................................................................................................................................................................................2311.0010100
.....................................................................................................................CCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................1811.0011000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATAA....................................................................................................................................2311.0010001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGTAT.......................................................................................................................................2021.0022000
..................................................................................................................CTACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................1911.0011000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTA............................................................................................................................................................................................................2311.0010001
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTCT..................................................................................................................................2511.0010100
........................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGTAT......................................................................................................................................2411.0010100
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2211.0011000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.....................................................................................................................................2211.0010100
...............................................................................................................................................................................................CTCGTCTCTACAGGTATCT....................................................................................................................................1911.0011000
.........................................................................................................................................................................................CAGAAGCTCGTCTCTACAGGTA.......................................................................................................................................2211.0010100
.....................................................................................................................CCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................2011.0011000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTG..............................................................................................................................................................................................................2211.0010010
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2411.0011000
..................................................................................................................CTACCCTGTAGTTCCGGGCTA...............................................................................................................................................................................................................2111.0011000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTT..................................................................................................................................2511.0011000
....................................................................................................................ACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................1911.0011000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTAT......................................................................................................................................1911.0011000
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2111.0011000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGC........................................................................................................................................1911.0010100
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG...................................................................................................................................2411.0011000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2411.0010100
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2411.0011000
.................................................................................................................CCTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2511.0010010
..................................................................................................................CTACCCTGTAGTTCCGGGCTTA..............................................................................................................................................................................................................2211.0011000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC....................................................................................................................................2211.0010001
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2411.0011000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTTA.................................................................................................................................2611.0011000
droYak3
TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GACGCATTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTC--AA-----------GA-------------------CAA-------------------GTGAACT--GAAG-----------------------------T---------ASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2316948.0069481935267014011421142164690010
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................2212748.0027481900302449101226430060
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................241515.005159311109281822112050
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC....................................................................................................................................231513.00513144136800000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................231359.00359362125611151822070
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................211211.002113213140915180020
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................221200.0020031698411140000
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................21176.00761443903430000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................23172.007210321904320020
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................22166.00661146600200010
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................22153.00537291401200000
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................21146.00461430000110000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................20146.00461818001450000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................22138.0038036001100000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG....................................................................................................................................23129.0029252200000000
..................................................................................................................CTACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................20128.0028164602000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................24128.0028108700210000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................21124.0024021101000010
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................19120.0020145000100000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................24114.001443700000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................21112.0012011100000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................23112.001228001100000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................20111.0011010000100000
...................................................................................................................TACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................20110.001017002000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2519.00900800010000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT....................................................................................................................................2116.00606000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCC................................................................................................................................................................................................................2015.00540100000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2515.00500500000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAC......................................................................................................................................2114.00440000000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT......................................................................................................................................2214.00401010020000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.....................................................................................................................................2214.00421100000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.....................................................................................................................................2214.00401300000000
..................................................................................................................CTACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................1913.00303000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2413.00302100000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2413.00302001000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC...................................................................................................................................2413.00300200010000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATC.....................................................................................................................................2012.00202000000000
...............................................................................................................................................................................................CTCGTCTCTACAGGTATCT....................................................................................................................................1912.00202000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC....................................................................................................................................2212.00200200000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2312.00200002000000
.................................................................................................................CCTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................2212.00201100000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................1812.00210000100000
...................................................................................................................TACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................1812.00201001000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTC...............................................................................................................................................................................................................2112.00200200000000
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATC.....................................................................................................................................2312.00220000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2412.00201000100000
..........................................................................................................................................TTT-AAATGGCGTT-C-GACGCATTGTCG...............................................................................................................................................................................2612.00202000000000
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2112.00202000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2512.00200101000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTTA...........................................................................................................................................................................................................2511.00100000100000
...........................................................................................................................................TT-AAATGGCGTT-C-GACGCATTGTCGGA.............................................................................................................................................................................2711.00101000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATGC....................................................................................................................................2311.00101000000000
....................................................................................................................ACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................1811.00101000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTGGC............................................................................................................................................................................................................2311.00101000000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTG.............................................................................................................................................................................................................2311.00100000100000
................................................................................................................................................................................................TCGTCTCTACAGGTATCT....................................................................................................................................1811.00101000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTTGG.................................................................................................................................2611.00101000000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2211.00101000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGC........................................................................................................................................1911.00100100000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGTT..........................................................................................................................................................................................................2611.00101000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTC............................................................................................................................................................................................................2311.00100100000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2511.00101000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCG....................................................................................................................................2211.00101000000000
....................................................................................................................ACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................2011.00101000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGG...........................................................................................................................................................................................................2411.00110000000000
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCTA...................................................................................................................................2211.00100000010000
...................................................................................................................TACCCTGTAGTTCCGGGCT................................................................................................................................................................................................................1911.00110000000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGC........................................................................................................................................1811.00101000000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATG.....................................................................................................................................2211.00100001000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATTG....................................................................................................................................2311.00101000000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGC...........................................................................................................................................................................................................2411.00100100000000
droEre2
TG-------------------------------------------------------------------------------------------------TAACGCTCCCGTGACCTACCCTGTAGTTCCGGGCTTTTGTTT-AAATGGCGTT-C-GACGC-TTGTCGGATTGCTGGCTCGATTATCAGAAGCTCGTCTCTACAGGTATCTCACAGGGTAGAAATAAACCTC--AA-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2319851.0098514532606180215260717110
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATC.....................................................................................................................................221949.009494241261452451350
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCT....................................................................................................................................221474.00474286478441250
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................231366.00366297617712270
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................241337.00337255910725310
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAT......................................................................................................................................211272.0027213317287420
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCC....................................................................................................................................231184.001844152002260
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCA....................................................................................................................................23149.00491501010230
...................................................................................................................TACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................22143.004337110220
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTT.............................................................................................................................................................................................................23137.003722450240
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTA.......................................................................................................................................20135.0035140201720
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................22135.003532000120
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTT...................................................................................................................................24126.002612011480
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATC.....................................................................................................................................21123.002319000130
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGT........................................................................................................................................19121.002160001140
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTAT......................................................................................................................................22119.001901201330
..................................................................................................................CTACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................22118.001814000130
...................................................................................................................TACCCTGTAGTTCCGGGCTTT..............................................................................................................................................................................................................21116.001611020120
..................................................................................................................CTACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................21115.001511010210
.............................................................................................................................................................................................AGCTCGTCTCTACAGGTATCT....................................................................................................................................21115.001514000010
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCG....................................................................................................................................23114.00142010470
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTAT......................................................................................................................................2019.0097010010
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2316.0063003000
...................................................................................................................TACCCTGTAGTTCCGGGCTT...............................................................................................................................................................................................................2015.0055000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGT...........................................................................................................................................................................................................2415.0052000210
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTATCT....................................................................................................................................2415.0053010100
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTC...................................................................................................................................2414.0040030010
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTT............................................................................................................................................................................................................2414.0043001000
.....................................................................................................................CCCTGTAGTTCCGGGCTTTTG............................................................................................................................................................................................................2114.0044000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGG.........................................................................................................................................1814.0042000110
...............................................................................................................................................................................................CTCGTCTCTACAGGTATCT....................................................................................................................................1913.0032000100
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAA......................................................................................................................................2113.0031000110
........................................................................................................................................................................................TCAGAAGCTCGTCTCTACAGGTAT......................................................................................................................................2413.0031000020
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTC............................................................................................................................................................................................................2313.0031000020
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATT.....................................................................................................................................2212.0021000100
..........................................................................................................................................TTT-AAATGGCGTT-C-GACGC-TTGTCGG..............................................................................................................................................................................2612.0021000100
..................................................................................................................CTACCCTGTAGTTCCGGGC.................................................................................................................................................................................................................1912.0022000000
...................................................................................................................TACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2412.0021000010
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATA.....................................................................................................................................2212.0020000020
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTA.......................................................................................................................................1912.0022000000
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCC....................................................................................................................................2211.0010100000
.............................................................................................................................................................CGC-TTGTCGGATTGCTGGC.....................................................................................................................................................................1911.0010000010
............................................................................................................................................................................................AAGCTCGTCTCTACAGGTATCG....................................................................................................................................2211.0010001000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTA............................................................................................................................................................................................................2211.0011000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATCTG...................................................................................................................................2411.0011000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTATAA....................................................................................................................................2311.0010000010
..........................................................................................................................................TTT-AAATGGCGTT-C-GACGC-TTGTCGGATT...........................................................................................................................................................................2911.0010000100
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2511.0011000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTAAA.....................................................................................................................................2211.0010000100
..........................................................................................................................................................................................AGAAGCTCGTCTCTACAGGTA.......................................................................................................................................2111.0010010000
....................................................................................................................ACCCTGTAGTTCCGGGCTTTTGA...........................................................................................................................................................................................................2311.0011000000
..................................................................................................................CTACCCTGTAGTTCCGGGCTTA..............................................................................................................................................................................................................2211.0011000000
...........................................................................................................................................................................................GAAGCTCGTCTCTACAGGTTCT.....................................................................................................................................2211.0010000010
..................................................................................................................CTACCCTGTAGTTCCGGGCTTTTGAA..........................................................................................................................................................................................................2611.0011000000
...............................................................................................................................................................................................CTCGTCTCTACAGGTATC.....................................................................................................................................1811.0011000000

Generated: 10/20/2015 at 11:23 PM