ID:

dwi_2784

 Coordinate:

scf2_1100000004909:6986483-6986614 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.5 -25.5 -25.3 -25.3

Flybase annnotation

CDS [Dwil\GK25183-cds]; exon [dwil_GLEANR_9344:2]; exon [dwil_GLEANR_9344:1]; CDS [Dwil\GK25183-cds]; intron [Dwil\GK25183-in]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGCAGACGAAGAGGATGACGATCTGCACATGGATGATCTTCAGGAGGGGGTAATCGAATGTGATACGGTCAAAGAAGGGGATGATGAAGTGGATGCAGAGGATGAGCATGTTTCCGATGGCGATCTGGCCATGGATGTGGACTCATTTCCAACTGAGGCCGAGGGTGAGGCTGAGTCCGAGGGCGTCGAGCCTGAAATTGAAACGGAATCAGCAACAGATCAGGAAAATCT
***********************************************************************************.....((.((...(((.(((((((......(((.(((((......))))))))......))))..)))..)))...))..........))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 M045
female body
 M020
head
 V119
head
....AGACGAAGAGGATGACGATCT............................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0
......................................................................................................................................................CAACTGAGGCCGAGGGTGAGGCT........................................................... 23 0 1 2.00 2 0 2 0 0 0
...................................................................................GATGAAGTGGATGCAGAGGAT................................................................................................................................ 21 0 1 2.00 2 1 1 0 0 0
...................................................................................GATGAAGTGGATGCAGAGGATGAGC............................................................................................................................ 25 0 1 2.00 2 0 2 0 0 0
............................................................................................................ATGTTTCCGATGGCGATCTGGC...................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
.................................................................................................AGAGGATGAGCATGTTTCCGATGG............................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
..........................................................................GAAGGGGATGATGAAGTGGATGC....................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.....................................................................TCAAAGAAGGGGATGATGAAGTG............................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
.........................................CAGGAGGGGGTAATCGAATGTGA........................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0
..........................................AGGAGGGGGTAATCGAATG........................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0
................................................................................................................................................................CGAGGGTGAGGCTGAGTCCGAGGGC............................................... 25 0 1 1.00 1 0 1 0 0 0
................................................................................................CAGAGGATGAGCATGTTTCCGATGGC.............................................................................................................. 26 0 1 1.00 1 0 0 0 1 0
..........AGAGGATGACGATCTGCACATGGAT..................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................GTCGAGCCTGAAATTGAAACGGAATC..................... 26 0 1 1.00 1 1 0 0 0 0
............................................................GTGATACGGTCAAAGAAGGGG....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
....................................................................................ATGAAGTGGATGCAGAGGATGA.............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................AACTGAGGCCGAGGGTGAGG............................................................. 20 0 1 1.00 1 1 0 0 0 0
...................................................................GGCCAAGGAAGGGGATGATAAAG.............................................................................................................................................. 23 3 1 1.00 1 0 0 1 0 0
..................................................................................TGATGAAGTGGATGCAGAGGAT................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1
..........................................................ATGTGATACGGTCAAAGAAGGGGAT..................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................GTCGAGCCTGAAATTGAAACGGA........................ 23 0 1 1.00 1 0 0 0 1 0
......................................................................................GAAGTGGATGCAGAGGAT................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0
.......................................................................................................................................................AACTGAGGCCGAGGGTGAGGCT........................................................... 22 0 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................................................ATCAGCAACAGATCAGGA...... 18 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................GTGAGGCTGAGTCCGAGGG................................................ 19 0 1 1.00 1 1 0 0 0 0
.......................................................CGAATGTGATACGGTCAAAGAAGGGG....................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................CAACTGAGGCCGAGGGTGAGGCTGA......................................................... 25 0 1 1.00 1 1 0 0 0 0
.................................................................................................AGAGGATGAGCATGTTTCCGATGGC.............................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................GAGGCTGAGTCCGAGGGCGTCGAGC........................................ 25 0 1 1.00 1 0 1 0 0 0
....................................................................................................................GAAGGCGATCTGGTCATGGC................................................................................................ 20 3 3 0.33 1 0 0 1 0 0
...............................................................................................................................................................................................................AATCAGCAACAGCTCGGG....... 18 2 3 0.33 1 0 0 1 0 0
....................................................................................................GGCTAAGCATGTTACCGA.................................................................................................................. 18 3 20 0.30 6 0 0 6 0 0
............................................................................................GATGCAGTGTATGAGCAT.......................................................................................................................... 18 2 9 0.22 2 0 1 0 0 1
.............................................................................GGTGATGATGAATTGGCTGCA...................................................................................................................................... 21 3 7 0.14 1 0 0 1 0 0
..................................................................................TGATGAAGTGGAAGCTGGGGA................................................................................................................................. 21 3 7 0.14 1 0 1 0 0 0
........................................................................................................................................................................AGGCAGAGTCTGAGTGCGTC............................................ 20 3 8 0.13 1 0 0 1 0 0
.....................................................................TGAAAGAAGCGGATGATGA................................................................................................................................................ 19 2 8 0.13 1 0 0 1 0 0
.........................................................................CGAAGAGGATGATGAAGTGGA.......................................................................................................................................... 21 2 13 0.08 1 0 0 1 0 0
................................................................................GAAGATGAAGTGGAAGCAGA.................................................................................................................................... 20 2 17 0.06 1 0 1 0 0 0
.....................AGATGCGCATGGATGATCT................................................................................................................................................................................................ 19 3 17 0.06 1 0 1 0 0 0
............................................................................................................................................................................................ATGCCTGAAATTGAAGCGGA........................ 20 3 19 0.05 1 0 1 0 0 0
...............................................................................GGTTGATGAAGTGGAAGCTG..................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
..........................................................................GAAGGGGATGTTGCGGTGGA.......................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TTCGTCTGCTTCTCCTACTGCTAGACGTGTACCTACTAGAAGTCCTCCCCCATTAGCTTACACTATGCCAGTTTCTTCCCCTACTACTTCACCTACGTCTCCTACTCGTACAAAGGCTACCGCTAGACCGGTACCTACACCTGAGTAAAGGTTGACTCCGGCTCCCACTCCGACTCAGGCTCCCGCAGCTCGGACTTTAACTTTGCCTTAGTCGTTGTCTAGTCCTTTTAGA
***********************************************************.....((.((...(((.(((((((......(((.(((((......))))))))......))))..)))..)))...))..........))*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 M020
head
............................................................................................CTACGTCTCCTACTCGTACAA....................................................................................................................... 21 0 1 1.00 1 1 0 0
...........................TGTATCTACTAGAAGTCCA.......................................................................................................................................................................................... 19 2 2 0.50 1 0 1 0
..............................................................................................................................................................................TCAGGTTCCTGCGGCTCGG....................................... 19 3 11 0.18 2 2 0 0
...GTCTGCTTCTCCTAGTCCTTG................................................................................................................................................................................................................ 21 3 10 0.10 1 0 1 0
...............................................................................................................................................................................................................GTAGTCGTCGTCTAGTCC....... 18 2 20 0.05 1 1 0 0
.................................................................................................................AGGCTATCGCTAGTCCGC..................................................................................................... 18 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004909:6986433-6986664 - dwi_2784 AA-----GCAGA--CGAAG--A----------GGATGACGATCTGCACATGGATGATCTTCAGGAGGGGGTAAT-------------CGAATGTGATACGGTCA------------------------------------------------AA----GAAGGGGATGAT------------------------------------GAAGTGGATGCAGAGG------------------ATGAGCATGTTTCCGATGGCGATC------------------TGGCCATGGATGTGGACTCATTTCCAACTGAGGCCGAGGGTGAGGCTGAGTCCGAGGGCGTCGAGCCTGAAATTGAAACGGAATCAGCA------------------------------------------------------------------A--CAGATCAGGAAAATCT------------
droVir3 scaffold_12932:1671924-1672092 + CA-----GCAGT--CGACA--TT---------GGCAAC----------------------------------------------CATTGAATGTGATACGGCCCAGTTG---GCGGC----GG------------------------------------------------------------------------------AGCTGGATGTGCAAACCGAAAAGAAGCTGCCCGCTGAAAT------------------GGTGC------------------TCACCTTGGAGGTGGAGCC---ATTGACCGAGGAGCAG------------------------------GAAGCTGAAGCGAATGCTGTGGCAGATGATGACAC---------------------------------------------------------------------CG------------
droMoj3 scaffold_6473:2937267-2937420 - CACCGGAGCCGG--AGC--TGGA---------GTCTGAGATGGAGTCGTCGCCAGAGCCATCCAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGATGACGAGAGAAAT------------------GCTGG------------------TTGCATTGGATGTTGAGCC---TCTGACCGAGGAGCAG------------------------------GAAGCGGAAGTGAATGCTGTAGCGGATGCCGACACCGATAT-----------------------------------------------------------------------------
droGri2 scaffold_14853:1373194-1373411 + AA-----GGAGCAG-------------------------------------------------------GAGCA----GGC---AGTC----------------------------------------------------------------------GACGATGAGGAGGAATCTGAGGAAACGACGCCAGAGACGACAGAGTTGGGCGAAGTCGATGAACTCAATATGTCGGCTGGCAT------AGATCC------GGTGA------------------TCGCAATGGAGCTGGAACCCCCCTTAACCGAGGAGCAG------------------------------GAGGCCGAAGCGAATGCGGTCGCCGATGATGATGC------------TGATGCTGAAATGGCA------------------------ATTCTGAGCGAG-----------------AA
dp5 XL_group1a:2582957-2583192 + GA-----GCCTG--TGA--CTGA---------GACTGATCCTGCGGATCCTCCCGATCATCCCGAGGGAGTGCC----GGC---GGTA----------------------------------------------------------------------GGAGATGAGGAG------------------------------------CCGACGGACGCGGAGG------------------AGAAGTATGTACCCGAAG------------------------GAGCCATGGAGGTAAAGGCATCCCCGACTGTAGCCGAGC---------AGCCAGCGGATGCGGACA------------------------------------CAGAGATGGAAATGGATGTGGATATGGAACACGGAGGAGAGGCAGAGGAAGAGC--CAGAGCAAGATAAACC------------
droPer2 scaffold_28:1020031-1020266 + GA-----GCCTG--TGA--CTGA---------GACTGATCCTGCGGATCCTCCCGATCATCCCGAGGGAGTGCC----GGC---GGTA----------------------------------------------------------------------GGAGATGATGAG------------------------------------CCGACGGACGCGGAGG------------------AGAAGGATGTACCCGAAG------------------------GAGCCATGGAGGTAAAGGCATCCCCGACTGTAGCCGAGC---------AGCCAGCGGATGCGGACA------------------------------------CAGAGATGGAAATGGATGTGGATATGGAACACGGAGGAGAGGCAGAGGAAGAGC--CAGAGCAAGATAAACC------------
droBip1 scf7180000396543:365552-365569 + AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGCAGGCGGAGCA------------
droKik1 scf7180000302610:177879-178081 + GA-----GGATTAC-GATG--A----------CTTTGAAAACGAGATCATGGAGGAACTGGCGAAGGAGGGTGTCCTTGA-TGCCAGTGGAAATGCTCTGAGCCAGCAG---GCGGCGGTCGAAACCAAAAGCCGCGA------CAGTGATCCCTCGC----------------------------------------------------------------------------------------------------------CCGTCGTTGACGAAATGGTGGCCATGGAGGTGGATGAATCCTACATCGATATGAAGC---------AACAGGCGGA-----------------------------------------------------------------------------------------------------------------GCAGCT---------
droFic1 scf7180000454072:3024202-3024350 + GA-----CGACGCT----GAGGCGTCAATGGC---------------------------------------------------------------------------TGGCGGCGAG----GAAACGGAGGAGTGCGAGCCTCCCAAAGACGCCTCGC----------------------------------------------------------------------------------------------------------C---TGCGGACGAAATGGTGGCCATGGAGCTGGAGGAGTCCTATATCGACGTGAAGG---------AACAGACGGA-----------------------------------------------------------------------------------------------------------------TCACCTCCTGGCAGA
droEle1 scf7180000491001:1424143-1424187 + GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGACGAATCCTATATCGACATTAAGC---------AACAAACGGA-----------------------------------------------------------------------------------------------------------------TCAG-----------
droEug1 scf7180000409182:454697-454847 + AA-----ACTGA--CGTAGATGAAACTCTGAC---------------------------------------------------------------------------TGCCGGCGAC----GAAACAGTGGAAAGTGATAATTTTAAGGACACTTCAC----------------------------------------------------------------------------------------------------------C---CGCTGACGAAATGGTGGCAATGGAGGTGGATGAATCCTATGTCGATATTAAAC---------AACAGACAGA-----------------------------------------------------------------------------------------------------------------CCAGCTCTTGGCGGA
droYak3 X:6415389-6415527 - AG-----GAAGCCC--------------------------------------TAGA---------------------------------------------------TGACGCCGAG----GAATCGGTTGAGCGTAAGCCTGTTAAGGACCCGTCCG----------------------------------------------------------------------------------------------------------C---CGAGGACGAAATAGCGGCCATGGAGGTGGAGGAATCCTATATTGACATTAAGC---------AGCAGACGAA-----------------------------------------------------------------------------------------------------------------TCAACTGTTAGTTGA
droEre2 scaffold_4644:1881850-1881924 + GG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CGCGGACGAAATGG------TGGAGGTGGAGGAGTCCTATATTGACATTAAGC---------AACAGACGAA-----------------------------------------------------------------------------------------------------------------AAAGCTGGTAGTTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AA-----GCAGA--CGAAG--A----------GGATGACGATCTGCACATGGATGATCTTCAGGAGGGGGTAAT-------------CGAATGTGATACGGTCA------------------------------------------------AA----GAAGGGGATGAT------------------------------------GAAGTGGATGCAGAGG------------------ATGAGCATGTTTCCGATGGCGATC------------------TGGCCATGGATGTGGACTCATTTCCAACTGAGGCCGAGGGTGAGGCTGAGTCCGAGGGCGTCGAGCCTGAAATTGAAACGGAATCAGCA------------------------------------------------------------------A--CAGATCAGGAAAATCT------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........AGA--CGAAG--A----------GGATGACGATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200020
..................................................................................................................................................................................................................................................................................................................CAACTGAGGCCGAGGGTGAGGCT...........................................................................................................................................2312.00200200
.......................................................................................................................................................................GAT------------------------------------GAAGTGGATGCAGAGG------------------AT..................................................................................................................................................................................................................................2112.00200110
.......................................................................................................................................................................GAT------------------------------------GAAGTGGATGCAGAGG------------------ATGAGC..............................................................................................................................................................................................................................2512.00200200
......................................................................................................................................................................................................................................................ATGTTTCCGATGGCGATC------------------TGGC......................................................................................................................................................................................2211.00100100
.........................................................................................................................................................................................................................AGAGG------------------ATGAGCATGTTTCCGATGG.................................................................................................................................................................................................................2411.00100100
..............................................................................................................................................................GAAGGGGATGAT------------------------------------GAAGTGGATGC...........................................................................................................................................................................................................................................................2311.00100010
.....................................................................................................TCA------------------------------------------------AA----GAAGGGGATGAT------------------------------------GAAGTG................................................................................................................................................................................................................................................................2311.00100010
............................................................CAGGAGGGGGTAAT-------------CGAATGTGA....................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.............................................................AGGAGGGGGTAAT-------------CGAATG.......................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
............................................................................................................................................................................................................................................................................................................................CGAGGGTGAGGCTGAGTCCGAGGGC...............................................................................................................................2511.00100100
........................................................................................................................................................................................................................CAGAGG------------------ATGAGCATGTTTCCGATGGC................................................................................................................................................................................................................2611.00110000
.................AG--A----------GGATGACGATCTGCACATGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.....................................................................................................................................................................................................................................................................................................................................................GTCGAGCCTGAAATTGAAACGGAATC.....................................................................................................2611.00100010
............................................................................................GTGATACGGTCA------------------------------------------------AA----GAAGGGG...............................................................................................................................................................................................................................................................................................................2111.00100010
........................................................................................................................................................................AT------------------------------------GAAGTGGATGCAGAGG------------------ATGA................................................................................................................................................................................................................................2211.00100010
...................................................................................................................................................................................................................................................................................................................AACTGAGGCCGAGGGTGAGG.............................................................................................................................................2011.00100010
......................................................................................................................................................................TGAT------------------------------------GAAGTGGATGCAGAGG------------------AT..................................................................................................................................................................................................................................2211.00100001
..........................................................................................ATGTGATACGGTCA------------------------------------------------AA----GAAGGGGAT.............................................................................................................................................................................................................................................................................................................2511.00100010
.....................................................................................................................................................................................................................................................................................................................................................GTCGAGCCTGAAATTGAAACGGA........................................................................................................2311.00110000
..............................................................................................................................................................................................................GAAGTGGATGCAGAGG------------------AT..................................................................................................................................................................................................................................1811.00101000
...................................................................................................................................................................................................................................................................................................................AACTGAGGCCGAGGGTGAGGCT...........................................................................................................................................2211.00100100
............................................................................................................................................................................................................................................................................................................................................................................ATCAGCA------------------------------------------------------------------A--CAGATCAGGA..................1811.00100010
.................................................................................................................................................................................................................................................................................................................................GTGAGGCTGAGTCCGAGGG................................................................................................................................1911.00100010
.......................................................................................CGAATGTGATACGGTCA------------------------------------------------AA----GAAGGGG...............................................................................................................................................................................................................................................................................................................2611.00100010
..................................................................................................................................................................................................................................................................................................................CAACTGAGGCCGAGGGTGAGGCTGA.........................................................................................................................................2511.00100010
.........................................................................................................................................................................................................................AGAGG------------------ATGAGCATGTTTCCGATGGC................................................................................................................................................................................................................2511.00100010
...................................................................................................................................................................................................................................................................................................................................GAGGCTGAGTCCGAGGGCGTCGAGC........................................................................................................................2511.00100100
droVir3
CA-----GCAGT--CGACA--TT---------GGCAAC----------------------------------------------CATTGAATGTGATACGGCCCAGTTG---GCGGC----GG------------------------------------------------------------------------------AGCTGGATGTGCAAACCGAAAAGAAGCTGCCCGCTGAAAT------------------GGTGC------------------TCACCTTGGAGGTGGAGCC---ATTGACCGAGGAGCAG------------------------------GAAGCTGAAGCGAATGCTGTGGCAGATGATGACAC---------------------------------------------------------------------CG------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................ATTGACCGAGGAGCAG------------------------------GA....................................................................................................................1811.001000000000000000000000000000000001000000000000000000000000000000
..................................CAAC----------------------------------------------CATTGAATGTGATAC.................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................GCTGAAGCGAATGCTGTGGCAGA............................................................................................2311.001000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................TGGATGTGCAAACCGAAAAGAAGCT...............................................................................................................................................................................................................................................2511.001000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................C---ATTGACCGAGGAGCAG------------------------------GA....................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................ATTGACCGAGGAGCAG------------------------------GAAGCTGAAGC...........................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AGCC---ATTGACCGAGGAGC......................................................................................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GGAGCC---ATTGACCGAGGAGC......................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.....................................................................................ATTGAATGTGATACGGCCCA...........................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TGACCGAGGAGCAG------------------------------GAAGC.................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................AGCTGAAGCGAATGCTGT..................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ACCTTGGAGGTGGAGCC---AT..................................................................................................................................................................1970.141000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ACCTTGGAGGTGGAGCC---A...................................................................................................................................................................1870.141000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................CACCTTGGAGGTGGAGCC---A...................................................................................................................................................................1970.141001000000000000000000000000000000000000000000000000000000000000
droMoj3
CACCGGAGCCGG--AGC--TGGA---------GTCTGAGATGGAGTCGTCGCCAGAGCCATCCAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGATGACGAGAGAAAT------------------GCTGG------------------TTGCATTGGATGTTGAGCC---TCTGACCGAGGAGCAG------------------------------GAAGCGGAAGTGAATGCTGTAGCGGATGCCGACACCGATAT-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................GACGAGAGAAAT------------------GCTGG------------------TTG.......................................................................................................................................................................................2011.001100000
droGri2
AA-----GGAGCAG-------------------------------------------------------GAGCA----GGC---AGTC----------------------------------------------------------------------GACGATGAGGAGGAATCTGAGGAAACGACGCCAGAGACGACAGAGTTGGGCGAAGTCGATGAACTCAATATGTCGGCTGGCAT------AGATCC------GGTGA------------------TCGCAATGGAGCTGGAACCCCCCTTAACCGAGGAGCAG------------------------------GAGGCCGAAGCGAATGCGGTCGCCGATGATGATGC------------TGATGCTGAAATGGCA------------------------ATTCTGAGCGAG-----------------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................GACGCCAGAGACGACAGAGTT.......................................................................................................................................................................................................................................................................2111.00101
dp5
GA-----GCCTG--TGA--CTGA---------GACTGATCCTGCGGATCCTCCCGATCATCCCGAGGGAGTGCC----GGC---GGTA----------------------------------------------------------------------GGAGATGAGGAG------------------------------------CCGACGGACGCGGAGG------------------AGAAGTATGTACCCGAAG------------------------GAGCCATGGAGGTAAAGGCATCCCCGACTGTAGCCGAGC---------AGCCAGCGGATGCGGACA------------------------------------CAGAGATGGAAATGGATGTGGATATGGAACACGGAGGAGAGGCAGAGGAAGAGC--CAGAGCAAGATAAACC------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................GATCCTGCGGATCCTCCCGATC..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATATGGAACACGGAGGAGAGGC.........................................2611.0010000000100
..........................................................................................................................................................................................................................................................................................GAGCCATGGAGGTAAAGGC.......................................................................................................................................................................1911.0010100000000
droPer2
GA-----GCCTG--TGA--CTGA---------GACTGATCCTGCGGATCCTCCCGATCATCCCGAGGGAGTGCC----GGC---GGTA----------------------------------------------------------------------GGAGATGATGAG------------------------------------CCGACGGACGCGGAGG------------------AGAAGGATGTACCCGAAG------------------------GAGCCATGGAGGTAAAGGCATCCCCGACTGTAGCCGAGC---------AGCCAGCGGATGCGGACA------------------------------------CAGAGATGGAAATGGATGTGGATATGGAACACGGAGGAGAGGCAGAGGAAGAGC--CAGAGCAAGATAAACC------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................TGTAGCCGAGC---------AGCCAGCGGATG..............................................................................................................................2312.002200000
.......................................................................................................................................................................................................................................................................................................AAAGGCATCCCCGACTGTAGCCGAGC---------..........................................................................................................................................2612.002200000
.............................................................CCGAGGGAGTGCC----GGC---GGTA----------------------------------------------------------------------GGAG..................................................................................................................................................................................................................................................................................................................2411.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................AGAGATGGAAATGGATGTGGAT.............................................................2211.001010000
.....................................................................................................................................................................ATGAG------------------------------------CCGACGGACGCGGA........................................................................................................................................................................................................................................................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................GCGGACA------------------------------------CAGAGATGGAAAT.......................................................................2011.001100000
...............................................................................................................................................................................................................................................................................................................CCCCGACTGTAGCCGAGC---------..........................................................................................................................................1811.001100000
............................................................................................................................................................................................................................GG------------------AGAAGGATGTACCCGAAG------------------------GAGC......................................................................................................................................................................................2411.001100000
...................................................................................................................................................................................................................................................................................................................GACTGTAGCCGAGC---------AGCCAGCGGATGC.............................................................................................................................2711.001001000
.........................................................................................................................................................................G------------------------------------CCGACGGACGCGGAGG------------------AG..................................................................................................................................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................C---------AGCCAGCGGATGCGGAC.........................................................................................................................1811.001010000
.....................................................................................................................................................................................................................................................GATGTACCCGAAG------------------------GAGCCATGGAG...............................................................................................................................................................................2411.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................AGATGGAAATGGATGTGGG..............................................................1940.251000010
droBip1
AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGAGCAGGCGGAGCA------------SizeHit CountTotal NormTotal
No Reads
droKik1
GA-----GGATTAC-GATG--A----------CTTTGAAAACGAGATCATGGAGGAACTGGCGAAGGAGGGTGTCCTTGA-TGCCAGTGGAAATGCTCTGAGCCAGCAG---GCGGCGGTCGAAACCAAAAGCCGCGA------CAGTGATCCCTCGC----------------------------------------------------------------------------------------------------------CCGTCGTTGACGAAATGGTGGCCATGGAGGTGGATGAATCCTACATCGATATGAAGC---------AACAGGCGGA-----------------------------------------------------------------------------------------------------------------GCAGCT---------SizeHit CountTotal NormTotal
No Reads
droFic1
GA-----CGACGCT----GAGGCGTCAATGGC---------------------------------------------------------------------------TGGCGGCGAG----GAAACGGAGGAGTGCGAGCCTCCCAAAGACGCCTCGC----------------------------------------------------------------------------------------------------------C---TGCGGACGAAATGGTGGCCATGGAGCTGGAGGAGTCCTATATCGACGTGAAGG---------AACAGACGGA-----------------------------------------------------------------------------------------------------------------TCACCTCCTGGCAGASizeHit CountTotal NormTotal
No Reads
droEle1
GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGACGAATCCTATATCGACATTAAGC---------AACAAACGGA-----------------------------------------------------------------------------------------------------------------TCAG-----------SizeHit CountTotal NormTotal
No Reads
droEug1
AA-----ACTGA--CGTAGATGAAACTCTGAC---------------------------------------------------------------------------TGCCGGCGAC----GAAACAGTGGAAAGTGATAATTTTAAGGACACTTCAC----------------------------------------------------------------------------------------------------------C---CGCTGACGAAATGGTGGCAATGGAGGTGGATGAATCCTATGTCGATATTAAAC---------AACAGACAGA-----------------------------------------------------------------------------------------------------------------CCAGCTCTTGGCGGASizeHit CountTotal NormTotal
No Reads
droYak3
AG-----GAAGCCC--------------------------------------TAGA---------------------------------------------------TGACGCCGAG----GAATCGGTTGAGCGTAAGCCTGTTAAGGACCCGTCCG----------------------------------------------------------------------------------------------------------C---CGAGGACGAAATAGCGGCCATGGAGGTGGAGGAATCCTATATTGACATTAAGC---------AGCAGACGAA-----------------------------------------------------------------------------------------------------------------TCAACTGTTAGTTGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................GACGAA-----------------------------------------------------------------------------------------------------------------TCAACTGTTAGT...1811.00100100000000
..............................................................................................................................................GTTAAGGACCCGTCCG----------------------------------------------------------------------------------------------------------C---CGAGGA..................................................................................................................................................................................................2311.00100000010000
.......GAAGCCC--------------------------------------TAGA---------------------------------------------------TGACGCCGAG----GAAT.......................................................................................................................................................................................................................................................................................................................................................2511.00100000000001
........................................................................................................................................AAGCCTGTTAAGGACCCGTC........................................................................................................................................................................................................................................................................................................................2011.00100100000000
...............................................................................................................................................................................................................................................................................................ATGGAGGTGGAGGAATCCTATATTGAC..........................................................................................................................................................2711.00100000010000
droEre2
GG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CGCGGACGAAATGG------TGGAGGTGGAGGAGTCCTATATTGACATTAAGC---------AACAGACGAA-----------------------------------------------------------------------------------------------------------------AAAGCTGGTAGTTGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................GG------TGGAGGTGGAGGAGTCCTATATTGA...........................................................................................................................................................2711.0010000100
................................................................................................................................................................................................................................................................................GACGAAATGG------TGGAGGCC............................................................................................................................................................................18140.2130001020

Generated: 05/18/2015 at 05:17 AM