ID:

dwi_2773

 Coordinate:

scf2_1100000004909:6629808-6629958 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-55.0 -54.9 -54.7

Flybase annnotation

exon [dwil_GLEANR_9354:1]; CDS [Dwil\GK25194-cds]; intron [Dwil\GK25194-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGTTAAAGTTGGCACTATGCTGATTCTGATCCTGGCTTCAATTGCCTGTGGTAAGTTGGGGGAGTGGCACACACACACACACGCGCGCGCAAGTAAATCCCTTCTAGTATGTGTGTGTGTGTGTGTGTGTGTGTGATTGGGTAAATAAGCTTTTACTTTCAAAAATTCCATTAGACCATTCAAGCATTGTATGTCGATTATAATTGTAAGTTAGCTACAGTTTGTTCTCAAAACTTTTAACTCTTTGATCA
**************************************************(((...((...((((((((((((((((((((((((((((((..................))))))))))))))))))))))))(((..(((((((......))))))))))..............))))))...))...))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 M020
head
.GTTAAAGTTGGCACTATGCT...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0
........................................................TGGGGGAGTGGCACACACACA.............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
...........................GATCGTGGGTTCAATTCCC............................................................................................................................................................................................................. 19 3 20 0.15 3 3 0 0 0
.........................................TTGCGGGTGGTAAGATGGGG.............................................................................................................................................................................................. 20 3 11 0.09 1 0 0 1 0
...............TATGCTGAGTCTAATCCTTG........................................................................................................................................................................................................................ 20 3 16 0.06 1 1 0 0 0
................................................................................................................................................................................................................AGTCTGCTCCAGTTTGTTCT....................... 20 3 17 0.06 1 1 0 0 0
.......................................................................................................................................................................................................................CACAGTCTGTTCTCAAAGC................. 19 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

ACAATTTCAACCGTGATACGACTAAGACTAGGACCGAAGTTAACGGACACCATTCAACCCCCTCACCGTGTGTGTGTGTGTGCGCGCGCGTTCATTTAGGGAAGATCATACACACACACACACACACACACACACTAACCCATTTATTCGAAAATGAAAGTTTTTAAGGTAATCTGGTAAGTTCGTAACATACAGCTAATATTAACATTCAATCGATGTCAAACAAGAGTTTTGAAAATTGAGAAACTAGT
**************************************************(((...((...((((((((((((((((((((((((((((((..................))))))))))))))))))))))))(((..(((((((......))))))))))..............))))))...))...))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 M045
female body
................................................................ACCGTGTGTGTGTGTGTGCGC...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
...............ATAAGACTAAGACTAGGAGCGTA..................................................................................................................................................................................................................... 23 3 2 0.50 1 0 1 0
.....TTCGGCCGTGATACCACTAA.................................................................................................................................................................................................................................. 20 3 4 0.25 1 0 0 1
.......................................................................................................................................................................GGTTGTCTGGGAAGTTCGTAA............................................................... 21 3 5 0.20 1 0 1 0
....................................................................................................................................................CCAAAATGGAAGTTTTTAA.................................................................................... 19 2 10 0.10 1 1 0 0
...................................................................GTGTGTGTGTGTGTGCGCGCG................................................................................................................................................................... 21 0 20 0.05 1 1 0 0
.....................................................................GTGTGTGTGTGTGCGCGCG................................................................................................................................................................... 19 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004909:6629758-6630008 - dwi_2773 TG------------------TTAAAGTTGGCACTATGCTGATTCTGATCCTGGCTTCAATTGCCTGTGGTAAGTT-GGG-------------GGAGTGG---C------------------------A---------------CACACACACA-----------------------------------------------------------------------CACGCGCGCGCA--AGTA---AA----------TCCCTTCTAGTAT--------GT--GTGTGTGTGTG--TGTGTGTGTGTG------------ATT------GGGTA-AATA-AGCTTTTACTTTCAAAAATTCCATTAG-------------------------------------------------------------------------------ACCAT----TCAAGCATTGTAT------GTCGATTATAATTGTA---------------AGTTAGCTACAGTTTGTTCTCAAAACT-----TTTAACTCTTTGA----------------------TCA
droVir3 scaffold_12970:11537925-11538080 - CA---------------------------------------------------------------------------------------------------------------------------------------------CACTCACACG-----------------------------------------------------------------------CACACGCACGCA--CAGA---GACT--------TGTCT--------GCGTGCATGT--GTGTGTGTGTG--TGTGT----GTG------------CGTTTAATTAAATG-CCAG-AACTTTAAATTA---GGATAACATTAA-------------------------------------------------------------------------------CTGCT----GCACGCGCGGT-T------GTCG----TTCTTGTC---------------ACTTA-------------------------------GCTGCTTCTTC--------------------TTC
droMoj3 scaffold_6540:5587930-5588086 - CG------------------ATTTGTTGGGCGCAAGAT---TTATGAACTTGTTTTCG-CTGACAGCCGACAGTG-GTT-------------AAGGTAA--------------------------------------------CACACACGCA-----------------------------------------------------------------------CACACACACACA--GGCG---AC----------TCGCT--------GTATAT--GT--ATGTGTATGTG--TGTGT----GTG------------CGT------GAA--C----ATGCCGCTAATTAGA-AGATTTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA
droGri2 scaffold_15203:7105604-7105796 + ATTGAATTCCACGCTGTGTTTTCTGTTCATAAGCG------CGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGCTC-------------------------GCCT--------GCATGTGTGT--GTGTGAGTGTG--TGTGTGAGT--GTC----------TTT------GCGTG-TCTT-TCCTATTGACT-------------------------------------------------------------------------------TTATATGGCATACTTTATTAT----ATAAAGAGTGCTT------GCGTATTG------CC---------------AACTGACAGTTGCCA---------GTT-----GCCAGTTGCTTTGATTTTGTCGTG-------------A
dp5 2:8172721-8172804 - GC------------------A--------------------------------------------------------------------------------------------------------------------------CACACACACA-----------------------------------------------------------------------CACACTCCCGCA--TGTA---AA----------TATTT------AT--TTGTGTGTTTCTGTG--TGTGTGGGTGT----GTG----------TGTA----AGTGGG--C----------------AAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droPer2 scaffold_15:1169922-1170012 + CA---------------------------------------------------------------------------------------------------------------------------------------------GATACACTCA-----------------------------------------------------------------------CACATGCACGAA--CGAA---TG----------TATCT--------GCGAGTGTGT--GTGTGTGTGTG--TGTGTGTGTGTG------------TGT------GTGTAC----------------ATACATCTTCCCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13340:8264234-8264359 - CC------------------A-------------------------ATCCCGACATC----------TAATGGTC-TTT-------------CGGGGAG--------------------------------------------TGAGTGAGTGTGGACGCCACACAC--ATT----------------------------------AAT-----------------TGCGAATACA--GAGA---AATTTAACACATTTCCA----GAGA--GTGCGAGT--GTGTG--TGTGTGTGTGT----GTG------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396621:203821-204004 + TT------------------ACCAAGTGTGCAGTG------TTCTGGTCCTGGCCTGGCTCGCCAGTGGTAAGTA-GTCGCAGTGGAGGCCCCTTCTA------------------------------------------------------------------------TTTAGG---GCCTTGATCGGTGC----------AACAAT----------TACCAAACCC----ACA--ATTATCGCA----------ACCTTTCAATTAC-CAACT--TG--GCGTGTGT--------------GTT------------TCTC------------TGG-AGCTTTTACTTTCAAAAATTCCATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302686:586103-586178 + GT--------------------AAGTCATGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC----GCGT------CTGT--GTGTGTGTGTG--TGTGTGTGTGTG------------TCTGTAAG-------AGAG-CGCGCC-----TAGAAAATTCCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453829:518022-518330 + TT------------------TCCAAGTGTGCAGTG------TCCTGATCCTGGCATGGATTGCCTGTGGTAAGTGAT--------------CCAAGTATTATCTA----TACCGT-----------TATT----GTTAT------------------------T-A---TTTTAGG---GCCTTGGCG----C----------AACAATAAGCAT---TT-----ACCCGCTTACAAAATTAGCGCA----------ACCTTTCGATTAC-----T--TT--GCGTGTGT--------------GTG------------CCTCGAAA-------ATGGAAGCTTTTACTTTCAAAAATTCCACTGCAATCGCGTGGAGTGACCAAAT--GCGATATATAGTG-ATATATA----------------------------------------GTT-GTG-------TAC------AAACACAG------CCCCTTCAAATCCGGC-G-----------------------ACC-----GTTAGCTCTTTTGTTCTCACCTCGAA-----------A
droEle1 scf7180000491272:1168373-1168701 + T--------------------CGAAGTGTGCAGTA------TCCTAATCCTGGCCTGGATTTCCTGTGGTAAGTA-G--------------CCCAT--TTGCCTATGATAAGTC-----------TCA----TAC--A-TATT--------------------------TATTAGG---GCCTTGGTC-------------------------------TACCACTCCCGCTTACA--ATTAGCGCA----------ACCTTTCAATTAC--------TT--GCGTGTGT--------------GTG------------GCTCGAAA-------ATGGAAGCTTTTACTTTCAAAAATTCCATTGCAATCGCGTGGAGTGACCAAATGTGCGATAGATGGTG-AT---CGGGCGTATATGTATATAGTATAGTATGGTATAGTATAGTAT----GTG----------------C---ACAG------CCCCTTCGAATC-GGT-G-----------------------ACC-----GTTAACTCTTTTGTTCTCACCTCGAATATCG------A
droRho1 scf7180000779616:41855-42048 - T--------------------CCAAGTGTGCAGTG------TCCTAATCCTGGCCTGGATTGTCTGTGGTAAGTA-G--------------CTTAA--TTCCCGA----TACTTTTTTTCAATGCGCA----TAC--A-TATT--------------------------GGTTAGG---GCCTTGGTT-------------------------------TACCACTCCCGCTTACA--ATTAGCGCA----------ACCTTTCAATTAC--------TT--GCGTGTGT--------------GTG------------CCTCCAAA-------TGGA-AGCTTTTACTTTCAAAAATTCCATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302126:2865156-2865434 + CT------------------TCCAAGTTTGCAGCG------TCCTAATCCTGGCCTGGATTGTCTGTGGTATGTC-A--------AAACCCCCAACTATTATC----------------------------------ATTATT--------------------------TTGTAGG---GCCTTGT------------------------GGTCT---TTACCACGCCCGCTCACA--ATTAGCGCA----------ACCTTTCGATTAC--------TC--GCGTGCGA--------------GGG------------GCTCGAAA-------ATGGTAGCTTTTACTTTCGAAAATTCCAATGCAATCGCGCGGCGAGTCCAAAT--GCGATATATTG--------------------------------------------------GCG-GTG-------TAT------C---AGTG------CCCCCTCGAATCTGGCCG-----------------------ACC-----GTTATCTCTTTTGTTCTCGCCTCG--------------
droTak1 scf7180000415248:204429-204729 - T--------------------CCAAGTTTGCAGTG------TCCTAATCCTCGCCTGGATTGCCTGTGGTAAGTA-C--------------TTTG--------TT----TACTAT-----------TATT----A---TTATT-TAT----------------T-A---TTTTTGGGTCGCCTTGGTCGG----------------------TTTTTTTAACCCCACCCGCTTACA--ATTAGCGCA-A--------ACCTTTCAATTAC--------TT--GCGTGTGT--------------GTG------------CCTCGAAA-------ATGGAAGCTTTTACTTTCAAAAATTCCATTGCAATCGCGTGGAGTGTCCAAAT--GCGATATATTGTTAGTATATT-----------------------GTGG-----------ATGTG-GTG-------TAC------A---AATG------CCCCTTCGAATC-GGC-G-------AGA---------CAAGACC-----GTTAGCTCTTTTGTT-----------------------
droEug1 scf7180000409553:231461-231528 + CA---------------------------------------------------------------------------------------------------------------------------------------------CACACACACA-----------------------------------------------------------------------CACACACACGCA--AGCA---TA----------CCCAA------AA--ATGCATGT--GTGTG--TGTG----------T--GTGTTTGTGTG--TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:20122879-20122954 + CG---------------------------------------------------------------------------------------------------------------------------------------------CACACACACA-----------------------------------------------------------------------CACACGCGCACA--TGTC---AGCT--------GCACA--------GCCAGGATAT--ATATACGTGTG--TGTGGGTGTGTG------------ACT------GGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:18919518-18919685 + T-----------------------------------------CCTGATCCTGGCCTGGCTTGCCTGTGGTAAGTG-T--------------CCAACTA--------------------------------------CATT-------------------------ATAGCTCCAGG---GCCTTGGGCAGAGCGATCCGATCAAACGATTG------------------GCTCACA--ATTAGCACA----------ACCTTTCAATTAC--------TC--GCGTGTTT--------------GCG------------CCTCGAAA-------ACGG-AGCTTTTACTTTCAAAAATTCCACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_8:2310588-2310897 + TG-----------CAGCGATTCCAAGTGTGCAGCG------TCCTGATCCTGGCCTGGATCGCCTGTGGTAAGTG-T--------------CCAACTA--------------------------------------TATT-------------------------ATAGCTCCAGG---GCCTTGGGCAGAGCGATCCCCTCAAACGATTG------------------GCTCACA--ATTAGCACA----------ACCTTTCAATTAC--------TC--GCGTGTTT--------------GCG------------CCTCGAAA-------ACGG-AGCTTTTACTTTCAAAAATTCCACTGCAATCGCGTGGAGTGTCCAAAT--GCGATATATAT--AATTTATGGA---------------------------------------CGAACG-------TCTATATCGC---AGTG------CCCCTTCGAATCTA---------------------------ACG-----GTCTGCTCTTTTGTTCTCGCCTCTAGAATCGA-AACGA
droYak3 X:19355072-19355404 + TT------------------TCCAAGTGTGCAGCG------TCCTAATCCTGGCCTGGATTGCCTGTGGTAAGTA-C--------------CCCACCATTGCTAA----TACTCT-----------CAGCAAAATATAT------------------------T-A---CAATAGG---GCCTTGGTAA----------CTCAATCGATTGGCCA--TTGGCCACTCCCGCTTGCA--ATTAGCCCA----------ACCTTTTAATTAC--------TC--GCGTGTGT--------------GCG------------CCTCGAAA-------ACGG-AGCTTTTACTTTCAAAAATTCCACTGCAATCGCGTGGAGTGTCCAAAT--GCGATCTATAG--CATATATG-----------------------------------------CGAGTG-------TATATATCTT---GGTGC-----CCCCTTCGAATCTGGC-A-------A---------------ACCTAACGGT---CTCTTTTGTTCTCGCCTCGAA--TCGAGAATCA
droEre2 scaffold_4690:10210081-10210284 + TG-----------CAGCGATTCCAAGTGTGCAGCG------TCCTAATCCTGGCCTGGATTGCCTGTGGTAAGTG-C--------------CAAACTATTGCCAG----CAC-------------CAA----TAC--A-TAA---------------------T-G---CTCTAGG---GCCTTGGTTA----------CTGAATCGAT----------TGCCACTCCCGCTTGCA--ATTAGCCAA----------ACCTTTCAATTAC--------TC--GCGTGTGT--------------GCG------------CCTCGAAA-------ACGG-AGCTTTTACTTTCAAAAATTCCACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TG------------------TTAAAGTTGGCACTATGCTGATTCTGATCCTGGCTTCAATTGCCTGTGGTAAGTT-GGG-------------GGAGTGG---C------------------------A---------------CACACACACA-----------------------------------------------------------------------CACGCGCGCGCA--AGTA---AA----------TCCCTTCTAGTAT--------GT--GTGTGTGTGTG--TGTGTGTGTGTG------------ATT------GGGTA-AATA-AGCTTTTACTTTCAAAAATTCCATTAG-------------------------------------------------------------------------------ACCAT----TCAAGCATTGTAT------GTCGATTATAATTGTA---------------AGTTAGCTACAGTTTGTTCTCAAAACT-----TTTAACTCTTTGA----------------------TCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.G------------------TTAAAGTTGGCACTATGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..........................................................................T-GGG-------------GGAGTGG---C------------------------A---------------CACACACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
CA---------------------------------------------------------------------------------------------------------------------------------------------CACTCACACG-----------------------------------------------------------------------CACACGCACGCA--CAGA---GACT--------TGTCT--------GCGTGCATGT--GTGTGTGTGTG--TGTGT----GTG------------CGTTTAATTAAATG-CCAG-AACTTTAAATTA---GGATAACATTAA-------------------------------------------------------------------------------CTGCT----GCACGCGCGGT-T------GTCG----TTCTTGTC---------------ACTTA-------------------------------GCTGCTTCTTC--------------------TTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................ACTCACACG-----------------------------------------------------------------------CACACGCACGCA--................................................................................................................................................................................................................................................................................................................................................2123.006006000000000000000000000000000000000000000000000000000000000000
.A---------------------------------------------------------------------------------------------------------------------------------------------CACTCACACG-----------------------------------------------------------------------CACACGCACG....................................................................................................................................................................................................................................................................................................................................................2122.505004000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................ACTCACACG-----------------------------------------------------------------------CACACGCACGC...................................................................................................................................................................................................................................................................................................................................................2031.003102000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................A---GACT--------TGTCT--------GCGTGCATG.......................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GTCG----TTCTTGTC---------------ACTTA-------------------------------GC................................2011.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................CACTCACACG-----------------------------------------------------------------------CACACGCACGCA--................................................................................................................................................................................................................................................................................................................................................2221.002001000000000000000000000000000000000000000000000000000000001000
.A---------------------------------------------------------------------------------------------------------------------------------------------CACTCACACG-----------------------------------------------------------------------CACACGCACGC...................................................................................................................................................................................................................................................................................................................................................2220.501001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................CACTCACACG-----------------------------------------------------------------------CACACGCACGC...................................................................................................................................................................................................................................................................................................................................................2130.331001000000000000000000000000000000000000000000000000000000000000
.A---------------------------------------------------------------------------------------------------------------------------------------------CACTCACACG-----------------------------------------------------------------------CACACGCA......................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................T--------GCGTGCATGT--GTGTGTGTG...........................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
CG------------------ATTTGTTGGGCGCAAGAT---TTATGAACTTGTTTTCG-CTGACAGCCGACAGTG-GTT-------------AAGGTAA--------------------------------------------CACACACGCA-----------------------------------------------------------------------CACACACACACA--GGCG---AC----------TCGCT--------GTATAT--GT--ATGTGTATGTG--TGTGT----GTG------------CGT------GAA--C----ATGCCGCTAATTAGA-AGATTTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATTGAATTCCACGCTGTGTTTTCTGTTCATAAGCG------CGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGCTC-------------------------GCCT--------GCATGTGTGT--GTGTGAGTGTG--TGTGTGAGT--GTC----------TTT------GCGTG-TCTT-TCCTATTGACT-------------------------------------------------------------------------------TTATATGGCATACTTTATTAT----ATAAAGAGTGCTT------GCGTATTG------CC---------------AACTGACAGTTGCCA---------GTT-----GCCAGTTGCTTTGATTTTGTCGTG-------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
GC------------------A--------------------------------------------------------------------------------------------------------------------------CACACACACA-----------------------------------------------------------------------CACACTCCCGCA--TGTA---AA----------TATTT------AT--TTGTGTGTTTCTGTG--TGTGTGGGTGT----GTG----------TGTA----AGTGGG--C----------------AAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................GTGTGTTTCTGTG--TGTGTG.......................................................................................................................................................................................................................................................................................19160.0610100000000
droPer2
CA---------------------------------------------------------------------------------------------------------------------------------------------GATACACTCA-----------------------------------------------------------------------CACATGCACGAA--CGAA---TG----------TATCT--------GCGAGTGTGT--GTGTGTGTGTG--TGTGTGTGTGTG------------TGT------GTGTAC----------------ATACATCTTCCCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................GCGAGTGTGT--GTGTGTGTGTG--T......................................................................................................................................................................................................................................................................................22200.051001000
droAna3
CC------------------A-------------------------ATCCCGACATC----------TAATGGTC-TTT-------------CGGGGAG--------------------------------------------TGAGTGAGTGTGGACGCCACACAC--ATT----------------------------------AAT-----------------TGCGAATACA--GAGA---AATTTAACACATTTCCA----GAGA--GTGCGAGT--GTGTG--TGTGTGTGTGT----GTG------------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................GA--GTGCGAGT--GTGTG--TGTGTGTA.....................................................................................................................................................................................................................................................................................2360.171000001
droBip1
TT------------------ACCAAGTGTGCAGTG------TTCTGGTCCTGGCCTGGCTCGCCAGTGGTAAGTA-GTCGCAGTGGAGGCCCCTTCTA------------------------------------------------------------------------TTTAGG---GCCTTGATCGGTGC----------AACAAT----------TACCAAACCC----ACA--ATTATCGCA----------ACCTTTCAATTAC-CAACT--TG--GCGTGTGT--------------GTT------------TCTC------------TGG-AGCTTTTACTTTCAAAAATTCCATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GT--------------------AAGTCATGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC----GCGT------CTGT--GTGTGTGTGTG--TGTGTGTGTGTG------------TCTGTAAG-------AGAG-CGCGCC-----TAGAAAATTCCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TT------------------TCCAAGTGTGCAGTG------TCCTGATCCTGGCATGGATTGCCTGTGGTAAGTGAT--------------CCAAGTATTATCTA----TACCGT-----------TATT----GTTAT------------------------T-A---TTTTAGG---GCCTTGGCG----C----------AACAATAAGCAT---TT-----ACCCGCTTACAAAATTAGCGCA----------ACCTTTCGATTAC-----T--TT--GCGTGTGT--------------GTG------------CCTCGAAA-------ATGGAAGCTTTTACTTTCAAAAATTCCACTGCAATCGCGTGGAGTGACCAAAT--GCGATATATAGTG-ATATATA----------------------------------------GTT-GTG-------TAC------AAACACAG------CCCCTTCAAATCCGGC-G-----------------------ACC-----GTTAGCTCTTTTGTTCTCACCTCGAA-----------ASizeHit CountTotal NormTotal
No Reads
droEle1
T--------------------CGAAGTGTGCAGTA------TCCTAATCCTGGCCTGGATTTCCTGTGGTAAGTA-G--------------CCCAT--TTGCCTATGATAAGTC-----------TCA----TAC--A-TATT--------------------------TATTAGG---GCCTTGGTC-------------------------------TACCACTCCCGCTTACA--ATTAGCGCA----------ACCTTTCAATTAC--------TT--GCGTGTGT--------------GTG------------GCTCGAAA-------ATGGAAGCTTTTACTTTCAAAAATTCCATTGCAATCGCGTGGAGTGACCAAATGTGCGATAGATGGTG-AT---CGGGCGTATATGTATATAGTATAGTATGGTATAGTATAGTAT----GTG----------------C---ACAG------CCCCTTCGAATC-GGT-G-----------------------ACC-----GTTAACTCTTTTGTTCTCACCTCGAATATCG------ASizeHit CountTotal NormTotal
No Reads
droRho1
T--------------------CCAAGTGTGCAGTG------TCCTAATCCTGGCCTGGATTGTCTGTGGTAAGTA-G--------------CTTAA--TTCCCGA----TACTTTTTTTCAATGCGCA----TAC--A-TATT--------------------------GGTTAGG---GCCTTGGTT-------------------------------TACCACTCCCGCTTACA--ATTAGCGCA----------ACCTTTCAATTAC--------TT--GCGTGTGT--------------GTG------------CCTCCAAA-------TGGA-AGCTTTTACTTTCAAAAATTCCATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CT------------------TCCAAGTTTGCAGCG------TCCTAATCCTGGCCTGGATTGTCTGTGGTATGTC-A--------AAACCCCCAACTATTATC----------------------------------ATTATT--------------------------TTGTAGG---GCCTTGT------------------------GGTCT---TTACCACGCCCGCTCACA--ATTAGCGCA----------ACCTTTCGATTAC--------TC--GCGTGCGA--------------GGG------------GCTCGAAA-------ATGGTAGCTTTTACTTTCGAAAATTCCAATGCAATCGCGCGGCGAGTCCAAAT--GCGATATATTG--------------------------------------------------GCG-GTG-------TAT------C---AGTG------CCCCCTCGAATCTGGCCG-----------------------ACC-----GTTATCTCTTTTGTTCTCGCCTCG--------------SizeHit CountTotal NormTotal
No Reads
droTak1
T--------------------CCAAGTTTGCAGTG------TCCTAATCCTCGCCTGGATTGCCTGTGGTAAGTA-C--------------TTTG--------TT----TACTAT-----------TATT----A---TTATT-TAT----------------T-A---TTTTTGGGTCGCCTTGGTCGG----------------------TTTTTTTAACCCCACCCGCTTACA--ATTAGCGCA-A--------ACCTTTCAATTAC--------TT--GCGTGTGT--------------GTG------------CCTCGAAA-------ATGGAAGCTTTTACTTTCAAAAATTCCATTGCAATCGCGTGGAGTGTCCAAAT--GCGATATATTGTTAGTATATT-----------------------GTGG-----------ATGTG-GTG-------TAC------A---AATG------CCCCTTCGAATC-GGC-G-------AGA---------CAAGACC-----GTTAGCTCTTTTGTT-----------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CA---------------------------------------------------------------------------------------------------------------------------------------------CACACACACA-----------------------------------------------------------------------CACACACACGCA--AGCA---TA----------CCCAA------AA--ATGCATGT--GTGTG--TGTG----------T--GTGTTTGTGTG--TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CG---------------------------------------------------------------------------------------------------------------------------------------------CACACACACA-----------------------------------------------------------------------CACACGCGCACA--TGTC---AGCT--------GCACA--------GCCAGGATAT--ATATACGTGTG--TGTGGGTGTGTG------------ACT------GGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................TGTG--TGTGGGTGTGTG------------ACT------GG....................................................................................................................................................................................................................................................21112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000200010000000000000100100000000010101000000000000200000010
...........................................................................................................................................................................................................................................A--TGTC---AGCT--------GCACA--------GCCAGGA.........................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................A--------GCCAGGATAT--ATATACGTGT..........................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200120000000000000000001000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TAT--ATATACGTGTG--TGTGGGT................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000020000000000000000001000000000000000001000000000000000
............................................................................................................................................................................................................................................................................................ATACGTGTG--TGTGGGTGTGTG------------...............................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100130000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TACGTGTG--TGTGGGTGTGTG------------A..............................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000101000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GATAT--ATATACGTGTG--TGTGG..................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000000000100000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TGTG--TGTGGGTGTGTG------------ACT------......................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001100010000000000000000
....................................................................................................................................................................................................................................................................................ATAT--ATATACGTGTG--TGTGGG.................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000001000000000000000010000000
...............................................................................................................................................................................................................................................................................CCAGGATAT--ATATACGTGTG--T......................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................CAGGATAT--ATATACGTGTG--TG.....................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000100
..............................................................................................................................................................................................................................................................................................ACGTGTG--TGTGGGTGTGTG------------AC.............................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000010000000
......................................................................................................................................................................................................................................................................................AT--ATATACGTGTG--TGTGGGTG...............................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................A-----------------------------------------------------------------------CACACGCGCACA--TGTC---AGCT--------.............................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................T--ATATACGTGTG--TGTGGGTGT..............................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CGTGTG--TGTGGGTGTGTG------------ACT------......................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................CACACGCGCACA--TGTC---AGCT--------GCACA--------GCC.............................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................ATATACGTGTG--TGTGGGTGTG.............................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................ATATACGTGTG--TGTGGGTGT..............................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................ACA--------GCCAGGATAT--ATATACGT............................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...............................................................................................................................................................................................................................................................................CCAGGATAT--ATATACGTGTG--TT.....................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................CA-----------------------------------------------------------------------CACACGCGCACA--TGTC---AGC......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................CACGCGCACA--TGTC---AGCT--------GCA..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................TGTG--TGTGGGTGTGTG------------ACT------GGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGTGGGTGTGTG------------ACT------GGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GCCAGGATAT--ATATACGTGTG--.......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ATAT--ATATACGTGTG--TGTGG..................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................ACA--TGTC---AGCT--------GCACA--------GCCAG...........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................ATAT--ATATACGTGTG--TGTGGC.................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TAT--ATATACGTGTG--TGTGGGTG...............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AGGATAT--ATATACGTGTG--TGTGGG.................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................ACACACA-----------------------------------------------------------------------CACACGCGCACA--TGT.............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................GTGTG--TGTGGGTGTGTG------------ACT------GGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TATACGTGTG--TGTGGGTGT..............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CAGGATAT--ATATACGTGTG--TGT....................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TATACGTGTG--TGTGGGTGTG.............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................A--TGTC---AGCT--------GCACA--------GCCAGG..........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................ACACGCGCACA--TGTC---AGCT--------.............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CACACA-----------------------------------------------------------------------CACACGCGCACA--TGT.............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TGTC---AGCT--------GCACA--------GCCAGGATA.......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TAT--ATATACGTGTG--TGTGG..................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................ATAT--ATATACGTGTG--TGTGGT.................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CACA--TGTC---AGCT--------GCACA--------GCCA............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CGCACA--TGTC---AGCT--------GCACA--------GC..............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AGGATAT--ATATACGTGTG--TGT....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TAT--ATATACGTGTG--TGTGGG.................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................ACGTGTG--TGTGGGTGTGTG------------ACT------GG....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...................................................................................................................................................................................................................................................................................................TG--TGTGGGTGTGTG------------ACT------GG....................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TACGTGTG--TGTGGGTGTG.............................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CGTGTG--TGTGGGTGTGTG------------...............................................................................................................................................................................................................................................................1840.7530000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CACACA-----------------------------------------------------------------------CACACGCGCACA--TG..............................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
CG---------------------------------------------------------------------------------------------------------------------------------------------CACACACACA-----------------------------------------------------------------------CACACGCGCA....................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................................................................TACGTGTG--TGTGGGTGTGTG------------C..............................................................................................................................................................................................................................................................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
.................................................................................................................................................CACACACA-----------------------------------------------------------------------CACACGCGCACA--T...............................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................CACACACACA-----------------------------------------------------------------------CACACGCGCAC...................................................................................................................................................................................................................................................................................................................................................21160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................GTGTG--TGTGGGTGTGTG------------A..............................................................................................................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
CG---------------------------------------------------------------------------------------------------------------------------------------------CACACACACA-----------------------------------------------------------------------CACACGCG......................................................................................................................................................................................................................................................................................................................................................20100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................ACGTGTG--TGTGGGTGTGTG------------T..............................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................ACACACACA-----------------------------------------------------------------------CACACGCGCA....................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droSim2
T-----------------------------------------CCTGATCCTGGCCTGGCTTGCCTGTGGTAAGTG-T--------------CCAACTA--------------------------------------CATT-------------------------ATAGCTCCAGG---GCCTTGGGCAGAGCGATCCGATCAAACGATTG------------------GCTCACA--ATTAGCACA----------ACCTTTCAATTAC--------TC--GCGTGTTT--------------GCG------------CCTCGAAA-------ACGG-AGCTTTTACTTTCAAAAATTCCACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................TAGCACA----------ACCTTTCAATTAC--------TC--GCGTGTT.............................................................................................................................................................................................................................................................................................2911.00100000010000000000
......................................................................................................................................................................................................GATCAAACGATTG------------------GC.......................................................................................................................................................................................................................................................................................................................................................1520.50100000001000000000
droSec2
TG-----------CAGCGATTCCAAGTGTGCAGCG------TCCTGATCCTGGCCTGGATCGCCTGTGGTAAGTG-T--------------CCAACTA--------------------------------------TATT-------------------------ATAGCTCCAGG---GCCTTGGGCAGAGCGATCCCCTCAAACGATTG------------------GCTCACA--ATTAGCACA----------ACCTTTCAATTAC--------TC--GCGTGTTT--------------GCG------------CCTCGAAA-------ACGG-AGCTTTTACTTTCAAAAATTCCACTGCAATCGCGTGGAGTGTCCAAAT--GCGATATATAT--AATTTATGGA---------------------------------------CGAACG-------TCTATATCGC---AGTG------CCCCTTCGAATCTA---------------------------ACG-----GTCTGCTCTTTTGTTCTCGCCTCTAGAATCGA-AACGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................TCCTGATCCTGGCCTGGATCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGCCTCTAGAATCGA-.....1911.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................TATAT--AATTTATGGA---------------------------------------CGAACG-------..............................................................................................................2111.0011000
droYak3
TT------------------TCCAAGTGTGCAGCG------TCCTAATCCTGGCCTGGATTGCCTGTGGTAAGTA-C--------------CCCACCATTGCTAA----TACTCT-----------CAGCAAAATATAT------------------------T-A---CAATAGG---GCCTTGGTAA----------CTCAATCGATTGGCCA--TTGGCCACTCCCGCTTGCA--ATTAGCCCA----------ACCTTTTAATTAC--------TC--GCGTGTGT--------------GCG------------CCTCGAAA-------ACGG-AGCTTTTACTTTCAAAAATTCCACTGCAATCGCGTGGAGTGTCCAAAT--GCGATCTATAG--CATATATG-----------------------------------------CGAGTG-------TATATATCTT---GGTGC-----CCCCTTCGAATCTGGC-A-------A---------------ACCTAACGGT---CTCTTTTGTTCTCGCCTCGAA--TCGAGAATCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................TCCTAATCCTGGCCTGGATTGCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
droEre2
TG-----------CAGCGATTCCAAGTGTGCAGCG------TCCTAATCCTGGCCTGGATTGCCTGTGGTAAGTG-C--------------CAAACTATTGCCAG----CAC-------------CAA----TAC--A-TAA---------------------T-G---CTCTAGG---GCCTTGGTTA----------CTGAATCGAT----------TGCCACTCCCGCTTGCA--ATTAGCCAA----------ACCTTTCAATTAC--------TC--GCGTGTGT--------------GCG------------CCTCGAAA-------ACGG-AGCTTTTACTTTCAAAAATTCCACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/18/2015 at 05:16 AM