ID:

dwi_276

 Coordinate:

scf2_1100000002720:1027-1177 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-14.7 -14.2 -14.1 -14.0

Flybase annnotation

CDS [Dwil\GK22302-cds]; exon [dwil_GLEANR_5481:1]; intron [Dwil\GK22302-in]

Repeatable elements

NameClassFamilyStrand
Gypsy1-I_Dpse-intLTRGypsy-
mature
  1. dwi_276  scf2_1100000002720:1069-1095 -
  2. scf2_1100000004953:56874-56900 -
  3. dwi_3637  scf2_1100000004953:135140-135166 +
  4. scf2_1100000001055:1412-1438 +
star
  1. dwi_276  scf2_1100000002720:1119-1143 -
  2. scf2_1100000001741:14800-14824 -
  3. scf2_1100000003492:2786-2810 -
  4. scf2_1100000003865:4627-4651 +
  5. scf2_1100000004943:90149-90173 -
  6. scf2_1100000004947:1202407-1202431 -
  7. scf2_1100000000108:16748-16772 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TATGTGCTCTCTAATGCCAACGAAGGGTTCAATGCCAAACTGGCGCCTAAGTATAAAGGCCCGTATAAAATAATCAAGTTAGACTACAAGAAGCCCAGGGGCGTGAGCGACGTACCGCCGGTCTGGCTGACTTAAAGGCCTTCAATAGTGACGACAACGAACGACCAGAACTCGGTCTTTCTGAACACCTCGTACCCACGGCCCGCACGGGGCCACTGATTAACGATCTTTCAAGGGGGAGCACTTGTTGG
************************************************************************************.................(((......(((..(((......((((........)))).......))))))...)))******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
....................................................................................................................................TAAAGGCCTTCAATAGTGACGACAACG............................................................................................ 27 0 4 1.25 5 0 5 0
...................................................................................................................................TTAAAGGCCCTCAATAGTGACGACAACG............................................................................................ 28 1 4 0.25 1 0 1 0
....................................................................................................................................TAAAGGCCTTCAATAGTGACGACAAC............................................................................................. 26 0 4 0.25 1 0 1 0
....................................................................................................................................TAAAGGCCTTCAATAGTGACGACAACGA........................................................................................... 28 0 4 0.25 1 1 0 0
........................................................................................................................................................................................ACACCTCGTACCCACGGCCCGCACG.......................................... 25 0 20 0.20 4 4 0 0
.............................................................................................................................GCTGACTTAAAGGCCTTCAATAGTGA.................................................................................................... 26 0 19 0.16 3 3 0 0
.....................GAAGGGTTCAATGCCAAACTGGCG.............................................................................................................................................................................................................. 24 0 20 0.15 3 3 0 0
........................................................................................................................................................................................ACACCTCGTACCCACGGCCCGCAC........................................... 24 0 20 0.15 3 3 0 0
....................................................................................TACAAGAAGCCCAGGGGCGTGAGCG.............................................................................................................................................. 25 0 7 0.14 1 0 1 0
..................................................................................................GGGCGTGAGCGACGTACCGCCGGTC................................................................................................................................ 25 0 8 0.13 1 1 0 0
.....................................................................................TCAAGAAGCCCAGGGGCGTGAGCG.............................................................................................................................................. 24 1 8 0.13 1 0 1 0
..................................................................................ACTACAAGAAGCCCAGGGGCGTGA................................................................................................................................................. 24 0 17 0.12 2 1 1 0
.................................................................................GACTACAAGAAGCCCAGGGGC..................................................................................................................................................... 21 0 17 0.12 2 1 1 0
.......................................................................................................................................AGGCCTTCAATAGTGACGACAACG............................................................................................ 24 0 9 0.11 1 1 0 0
.....................GAAGGGTTCAATGCCAAACTGGC............................................................................................................................................................................................................... 23 0 20 0.10 2 2 0 0
.............................................................................................................................GCTGACTTAAAGGCCTTCAATAGT...................................................................................................... 24 0 20 0.10 2 2 0 0
.........................................................................................................................................................................................CACCTCGTACCCACGGCCCGCACG.......................................... 24 0 20 0.10 2 2 0 0
...........................................................................................................CGACGTACCGCCGGTCTG.............................................................................................................................. 18 0 13 0.08 1 1 0 0
..............TGCCAACGAAGGGTTCAATGCCAAAC................................................................................................................................................................................................................... 26 0 14 0.07 1 0 1 0
.................................................................................................................ACCGCCGGTCTGGCTGACTTAAAG.................................................................................................................. 24 0 14 0.07 1 1 0 0
..............TGCCAACGAAGGGTTCAATGC........................................................................................................................................................................................................................ 21 0 14 0.07 1 0 1 0
..............TGCCAACGAAGGGTTCAATGCCA...................................................................................................................................................................................................................... 23 0 14 0.07 1 1 0 0
................................................................................................................................GACTTAAAGGCCTTCAATAGTGACGA................................................................................................. 26 0 16 0.06 1 1 0 0
.................................................................................GACTACAAGAAGCCCAGGGGCGT................................................................................................................................................... 23 0 16 0.06 1 0 0 1
.................................................................................GACTACAAGAAGCCCAGGGGCGTGA................................................................................................................................................. 25 0 16 0.06 1 1 0 0
.................................................................................GACTACAAGAAGCCCAGGGGCGTG.................................................................................................................................................. 24 0 16 0.06 1 1 0 0
..............................................................................................................................CTGACTTAAAGGCCTTCAATAGTGACGA................................................................................................. 28 0 16 0.06 1 1 0 0
...............................................................................TAGACTACAAGAAGCCCAGGGGCGT................................................................................................................................................... 25 0 16 0.06 1 1 0 0
.....................................................................................................................................AAAGGCCTTCAATAGTGACGAC................................................................................................ 22 0 17 0.06 1 1 0 0
...............................................................................TAGACTACAAGAAGCCCAGGGGCG.................................................................................................................................................... 24 0 17 0.06 1 1 0 0
..............................................................................TTAGACTACAAGAAGCCCAGGGG...................................................................................................................................................... 23 0 17 0.06 1 1 0 0
..............................................................................TTAGACTACAAGAAGCCCAGGGGC..................................................................................................................................................... 24 0 17 0.06 1 1 0 0
...............................................................................TAGACTTCAAGAAGCCCAGGGGCG.................................................................................................................................................... 24 1 18 0.06 1 1 0 0
..............................................................................................................................CTGACTTAAAGGCCTTCAATA........................................................................................................ 21 0 20 0.05 1 1 0 0
..............................................................................................................................CTGACTTAAAGGCCTTCAATAGTGA.................................................................................................... 25 0 20 0.05 1 1 0 0
..............................................................................................................................CTGACTTAAAGGCCTTCAATAGT...................................................................................................... 23 0 20 0.05 1 1 0 0
.........................................................................................................................................................................................CACCTCGTACCCACGGCCC............................................... 19 0 20 0.05 1 1 0 0
.............................................CCTAAGTATAAAGGCCCGTATAAAAA.................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0
.................................GCCAAACTGGCGCCTAAGTATAAAG................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0
..............................................................................................................................CTGACTTAAAGGCCTTCAATAG....................................................................................................... 22 0 20 0.05 1 1 0 0
........................GGGTTCAATGCCAAACTGGCG.............................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0
.............................................................................................................................GCTGACTTAAAGTCCTTCAATAGT...................................................................................................... 24 1 20 0.05 1 0 1 0
..............................................................................................................................CTGACTTAAAGGCCTTCAATAGTG..................................................................................................... 24 0 20 0.05 1 1 0 0
.............................................................................................................................GCTGACTTAAAGGCCTTCAATA........................................................................................................ 22 0 20 0.05 1 1 0 0

Anti-sense strand reads

ATACACGAGAGATTACGGTTGCTTCCCAAGTTACGGTTTGACCGCGGATTCATATTTCCGGGCATATTTTATTAGTTCAATCTGATGTTCTTCGGGTCCCCGCACTCGCTGCATGGCGGCCAGACCGACTGAATTTCCGGAAGTTATCACTGCTGTTGCTTGCTGGTCTTGAGCCAGAAAGACTTGTGGAGCATGGGTGCCGGGCGTGCCCCGGTGACTAATTGCTAGAAAGTTCCCCCTCGTGAACAACC
********************************************************************************************.................(((......(((..(((......((((........)))).......))))))...)))************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body		 V119
head
.................................................................................CTGATGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 25 0 16 2.81 45 19 25 0 1 0
.......................................................................................................................................TCCGGAAGTTATCACTGCTGTTGCTT.......................................................................................... 26 0 9 1.67 15 8 2 5 0 0
........................................................................................................................................................................................TGTGGAGCATGGGTGCCGGGCGT............................................ 23 0 20 1.50 30 8 22 0 0 0
......................................................................................................................................TTCCGGAAGTTATCACTGCTGTTGCT........................................................................................... 26 0 9 1.44 13 11 2 0 0 0
...............................TACGGTTTGACCGCGGATTCATATTT.................................................................................................................................................................................................. 26 0 19 1.42 27 20 7 0 0 0
..............................................................................................................................GACTGAATCTCCGCAAGTC.......................................................................................................... 19 3 20 1.40 28 26 0 1 1 0
.............................................................................................................................CGACTGAATTTCCGGAAGTTATCACT.................................................................................................... 26 0 19 1.37 26 16 10 0 0 0
..............................................................................................................................GACTGAATCTCCGCAAGT........................................................................................................... 18 2 20 1.35 27 23 3 0 1 0
...............................TACGGTTTGACCGCGGATTCATAT.................................................................................................................................................................................................... 24 0 19 1.32 25 10 15 0 0 0
...............................TACGGTTTGACCGCGGATTCATATT................................................................................................................................................................................................... 25 0 19 1.11 21 17 4 0 0 0
.............................................................................................................................AGACTGAATCTCCGCAAGT........................................................................................................... 19 3 20 1.05 21 0 10 11 0 0
........................................................................................................................................CCGGAAGTTATCACTGCTGTTGCTT.......................................................................................... 25 0 9 1.00 9 6 3 0 0 0
......................................................................................................................................TTCCGGAAGTTATCACTGCTGTTGCTT.......................................................................................... 27 0 9 1.00 9 9 0 0 0 0
..............................................................................................................GCATGGCGGCCAGACCGACTGAATT.................................................................................................................... 25 0 14 0.93 13 11 2 0 0 0
.......................................................................................................................................TCCGGAAGTTATCACTGCTGTTGCT........................................................................................... 25 0 9 0.89 8 6 1 1 0 0
.............................GTTACGGTTTGACCGCGGATTCATAT.................................................................................................................................................................................................... 26 0 19 0.79 15 14 1 0 0 0
.........................................................................................................................................................................................GTGGAGCATGGGTGCCGGGCGT............................................ 22 0 20 0.75 15 3 12 0 0 0
..........................CAAGTTACGGTTTGACCGCGGATTCAT...................................................................................................................................................................................................... 27 0 16 0.69 11 8 3 0 0 0
........................................................................................TCTTCGGGTCCCCGCACTCGCTGCAT......................................................................................................................................... 26 0 5 0.60 3 3 0 0 0 0
...................................................................................GATGTTCTTCGGGTCCCCGCACTCGC.............................................................................................................................................. 26 0 7 0.57 4 2 2 0 0 0
......................................................................................GTTCTTCGGGTCCCCGCACTCGCT............................................................................................................................................. 24 0 7 0.57 4 4 0 0 0 0
.........................CCAAGTTACGGTTTGACCGCGGATTCAT...................................................................................................................................................................................................... 28 0 16 0.56 9 4 5 0 0 0
..................................................................................TGATGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 24 0 17 0.53 9 6 2 0 1 0
..................................................................................................................................................................................................................CCGGTGACTAATTGCTAGAAAGTT................. 24 0 14 0.50 7 2 2 3 0 0
.....................................................................................................................................TTTCCGGAAGTTATCACTGCTGTT.............................................................................................. 24 0 4 0.50 2 2 0 0 0 0
.................................................TCATATTTCCGGGCATATTTTATTAGT............................................................................................................................................................................... 27 0 20 0.50 10 9 1 0 0 0
.................................CGGTTTGACCGCGGATTCATATTT.................................................................................................................................................................................................. 24 0 20 0.45 9 3 6 0 0 0
........................................................................................................................................CCGGAAGTTATCACTGCTGTTGCT........................................................................................... 24 0 9 0.44 4 4 0 0 0 0
..........................................................................................................................................GGAAGTTATCACTGCTGTTGCTT.......................................................................................... 23 0 9 0.44 4 3 1 0 0 0
................................ACGGTTTGACCGCGGATTCATATTT.................................................................................................................................................................................................. 25 0 19 0.42 8 3 5 0 0 0
...........................................................................................................GCTGCATGGCGGCCAGACCGACTGAATT.................................................................................................................... 28 0 12 0.42 5 5 0 0 0 0
............................AGTTACGGTTTGACCGCGGATTCAT...................................................................................................................................................................................................... 25 0 18 0.39 7 5 2 0 0 0
................................................................................TCTGATGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 26 0 16 0.38 6 6 0 0 0 0
.................................................................................CTGAAGTTCTTCGGGTCCCCGCACTCGC.............................................................................................................................................. 28 1 8 0.38 3 3 0 0 0 0
................................................................................................................................CTGAATTTCCGGAAGTTATCACTGCT................................................................................................. 26 0 16 0.38 6 4 2 0 0 0
................................ACGGTTTGACCGCGGATTCATAT.................................................................................................................................................................................................... 23 0 19 0.37 7 3 4 0 0 0
.................................................................................................................................TGAATTTCCGGAAGTTATCACTGCTGT............................................................................................... 27 0 14 0.36 5 4 1 0 0 0
..................................................................................................................................GAATTTCCGGAAGTTATCACTGCTGT............................................................................................... 26 0 14 0.36 5 3 2 0 0 0
...........................AAGTTACGGTTTGACCGCGGATTCAT...................................................................................................................................................................................................... 26 0 17 0.35 6 6 0 0 0 0
.................................CGGTTTGACCGCGGATTCATAT.................................................................................................................................................................................................... 22 0 20 0.35 7 3 3 0 0 1
.............................................GGATTCATATTTCCGGGCATATTTTAT................................................................................................................................................................................... 27 0 20 0.35 7 0 7 0 0 0
..................................GGTTTGACCGCGGATTCATATTT.................................................................................................................................................................................................. 23 0 20 0.35 7 2 5 0 0 0
......................................................................................................................................................................................GTTGTGGAGCATGGGTGCCGGGCGT............................................ 25 1 3 0.33 1 0 1 0 0 0
...............................................................................................................................ACTGAATTTCCGGAAGTTATCACTGCT................................................................................................. 27 0 16 0.31 5 5 0 0 0 0
.......................TCCCAAGTTACGGTTTGACCGCGGAT.......................................................................................................................................................................................................... 26 0 20 0.30 6 4 1 1 0 0
..................................GGTTTGACCGCGGATTCATATT................................................................................................................................................................................................... 22 0 20 0.30 6 2 4 0 0 0
.................................................................................CTGATGTTCTTCGGGTCCCCGCACTCGC.............................................................................................................................................. 28 0 7 0.29 2 2 0 0 0 0
...........................................................................................................................ACCGACTGAATTTCCGGAAGTTATCACT.................................................................................................... 28 0 19 0.26 5 4 1 0 0 0
................................ACGGTTTGACCGCGGATTCATATT................................................................................................................................................................................................... 24 0 19 0.26 5 3 2 0 0 0
.....................................................................................................................................TTTCCGGAAGTTATCACTGCTGTTGCTT.......................................................................................... 28 0 4 0.25 1 1 0 0 0 0
..................................................................................TGAAGTTCTTCGGGTCCCCGCACTCGC.............................................................................................................................................. 27 1 8 0.25 2 2 0 0 0 0
....................................................................................AAGTTCTTCGGGTCCCCGCACTCGC.............................................................................................................................................. 25 1 8 0.25 2 2 0 0 0 0
.............................................................................................................................CGACTGAATTTCCGGAAGTTATCACTGCT................................................................................................. 29 0 16 0.25 4 4 0 0 0 0
.............................GTTACGGTTTGACCGCGGATTCAT...................................................................................................................................................................................................... 24 0 20 0.25 5 5 0 0 0 0
.......................................................................................................................................TCCGGAAGTTATCACTGCTGT............................................................................................... 21 0 20 0.25 5 5 0 0 0 0
.............................................................................................................................CGACTGAATTTCCGGAAGTTATCACTGC.................................................................................................. 28 0 16 0.25 4 4 0 0 0 0
...................................................................................GAAGTTCTTCGGGTCCCCGCACTCGC.............................................................................................................................................. 26 1 8 0.25 2 2 0 0 0 0
.......................................................................................................................................................................................................................GACTAATTGCTAGAAAGTTCCCCCT........... 25 0 13 0.23 3 3 0 0 0 0
.................................................................................CTGATGTTCTTCGGGTCCCCGCACTC................................................................................................................................................ 26 0 9 0.22 2 0 2 0 0 0
.........................................................................................................................................CGGAAGTTATCACTGCTGTTGCTT.......................................................................................... 24 0 9 0.22 2 1 1 0 0 0
......................................................................................................................................TTCCGGAAGTTATCACTGCTGTT.............................................................................................. 23 0 9 0.22 2 2 0 0 0 0
......................................................................................................................................GTCCGGAAGTTATCACTGCTGTTGCTT.......................................................................................... 27 1 9 0.22 2 2 0 0 0 0
......................................................................................................................................TTCCGGAAGTTATCACTGCTGTTGC............................................................................................ 25 0 9 0.22 2 2 0 0 0 0
..................................................................................................................GGCGGCCAGACCGACTGAATT.................................................................................................................... 21 0 14 0.21 3 1 2 0 0 0
............................................................................................................................CCGACTGAATTTCCGGAAGTTATCACT.................................................................................................... 27 0 19 0.21 4 3 1 0 0 0
..................................................CATATTTCCGGGCATATTTTATTAGT............................................................................................................................................................................... 26 0 20 0.20 4 3 1 0 0 0
.................................CGGTTTGACCGCGGATTCATATT................................................................................................................................................................................................... 23 0 20 0.20 4 3 1 0 0 0
.............TACGGTTGCTTCCCAAGTTACGGT...................................................................................................................................................................................................................... 24 0 11 0.18 2 2 0 0 0 0
...........................................................................................................GCTGCATGGCGGCCAGACCGACTGAAT..................................................................................................................... 27 0 12 0.17 2 2 0 0 0 0
..............................TTACGGTTTGACCGCGGATTCATAT.................................................................................................................................................................................................... 25 0 19 0.16 3 3 0 0 0 0
.............................................................................................................................CGACTGAATTTCAGGAAGTTATCACT.................................................................................................... 26 1 19 0.16 3 3 0 0 0 0
...............................TACGGTTTGACCGCGGATTCATA..................................................................................................................................................................................................... 23 0 20 0.15 3 3 0 0 0 0
...............................................................................................................................ACTGAATCTCCGCAAGTCA......................................................................................................... 19 3 20 0.15 3 3 0 0 0 0
..........................................CGCGGATTCATATTTCCGGGCATAT........................................................................................................................................................................................ 25 0 20 0.15 3 0 3 0 0 0
......................................................................................................................................TTCCGGAAGTTATCACTGCTGT............................................................................................... 22 0 20 0.15 3 3 0 0 0 0
..................................................................................TGATGTTCTTCGGGTCCCCGCACTCGC.............................................................................................................................................. 27 0 7 0.14 1 1 0 0 0 0
................................................................................................................................CTGAATTTCCGGAAGTTATCACTGCTGT............................................................................................... 28 0 14 0.14 2 2 0 0 0 0
........................................................................................TCTTCGGGTCCCCGCACTCGC.............................................................................................................................................. 21 0 7 0.14 1 1 0 0 0 0
..................................................................................................................................................................................................................CCGGTGACTAATTGCTAGAAAGT.................. 23 0 14 0.14 2 1 1 0 0 0
..........................................................................................TTCGGGTCCCCGCACTCGCTGCAT......................................................................................................................................... 24 0 7 0.14 1 1 0 0 0 0
........................................................................................TCTTCGGGTCCCCGCACTCGCT............................................................................................................................................. 22 0 7 0.14 1 1 0 0 0 0
......................................................................................GTTCTTCGGGTCCCCGCACTCGC.............................................................................................................................................. 23 0 7 0.14 1 1 0 0 0 0
.................................................................................CCGATGTTCTTCGGGTCCCCGCACTCGC.............................................................................................................................................. 28 1 7 0.14 1 0 1 0 0 0
...............................................................................................................CATGGCGGCCAGACCGACTGAATTT................................................................................................................... 25 0 14 0.14 2 2 0 0 0 0
...................................................................................................................................AATTTCCGGAAGTTATCACTGCTGT............................................................................................... 25 0 14 0.14 2 2 0 0 0 0
...............................................................................................................CATGGCGGCCAGACCGACTGAATT.................................................................................................................... 24 0 14 0.14 2 1 1 0 0 0
..............................................................................................................GCATGGCGGCCAGACCGACTGAAT..................................................................................................................... 24 0 14 0.14 2 2 0 0 0 0
...............................................................................................................................................................................................................GCCCCGGTGACTAATTTCTAGAAAGT.................. 26 1 7 0.14 1 0 0 1 0 0
...............................................................................................................................ACTGAATTTCCGGAAGTTATCACTGC.................................................................................................. 26 0 16 0.13 2 2 0 0 0 0
.....................................................................................................................GGCCAGACCGACTGAATTTCCGGAAGT........................................................................................................... 27 0 8 0.13 1 0 1 0 0 0
.................................................................................CTGATGTTCTTCGGGTCCCCGCAC.................................................................................................................................................. 24 0 16 0.13 2 1 1 0 0 0
.................................................................................................................................TGAATTTCCGGAAGTTATCACTGCT................................................................................................. 25 0 16 0.13 2 2 0 0 0 0
..........................CAAGTTACGGTTTGACCGCGGATTCATAT.................................................................................................................................................................................................... 29 0 16 0.13 2 0 2 0 0 0
..............................................................................AATCTGATGTTCTTCGGGTCCCCGCAC.................................................................................................................................................. 27 0 16 0.13 2 2 0 0 0 0
.................................................................................CTGAAGTTCTTCGGCTCCCCGCACTCGC.............................................................................................................................................. 28 2 8 0.13 1 0 1 0 0 0
................................................................................TCTGAAGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 26 1 17 0.12 2 2 0 0 0 0
..................................................................................TGATGTTCTTCGGGTCCCCGCAC.................................................................................................................................................. 23 0 17 0.12 2 2 0 0 0 0
..............................................................................AATCTGAAGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 28 1 17 0.12 2 2 0 0 0 0
...............................................................................TTCTGATGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 27 1 17 0.12 2 2 0 0 0 0
...........................AAGTTACGGTTTGACCGCGGATTCATAT.................................................................................................................................................................................................... 28 0 17 0.12 2 2 0 0 0 0
.................................................................................CTGAAGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 25 1 17 0.12 2 2 0 0 0 0
.......................................................................................................................................TCCGTAAGTTATCACTGCTGTTGCTT.......................................................................................... 26 1 9 0.11 1 0 1 0 0 0
........................................................................................................................................CCGGAGGTTATCACTGCTGTTGCTT.......................................................................................... 25 1 9 0.11 1 1 0 0 0 0
................................................................................TCTGATGTTCTTCGGGTCCCCGCACTC................................................................................................................................................ 27 0 9 0.11 1 0 1 0 0 0
......................................................................................................................................TTCCGGAAGTTATCACTGCTGTTGAT........................................................................................... 26 1 9 0.11 1 1 0 0 0 0
.......................................................................................................................................CCCGGAAGTTATCACTGCTGTTGCTT.......................................................................................... 26 1 9 0.11 1 0 0 1 0 0
.......................................................................................................................................TCCGGAAGTTATCACCGCTGTTGCTT.......................................................................................... 26 1 9 0.11 1 0 1 0 0 0
..................................................................................TGAAGTTCTTCGGGTCCCCGCACTCG............................................................................................................................................... 26 1 9 0.11 1 1 0 0 0 0
..........................................................................................................................................GGAAGTTATCACTGCTGTTGCT........................................................................................... 22 0 9 0.11 1 1 0 0 0 0
..............................TTACGGTTTGACCGCGGATTCATATT................................................................................................................................................................................................... 26 0 19 0.11 2 2 0 0 0 0
.................................................................................................................................................................TTTGGTCTTGAGCCAGAAAGACT................................................................... 23 2 19 0.11 2 0 2 0 0 0
..............................ATACGGTTTGACCGCGGATTCATATTT.................................................................................................................................................................................................. 27 1 19 0.11 2 2 0 0 0 0
.............................GTTACGGTTTGACCGCGGATTCATATT................................................................................................................................................................................................... 27 0 19 0.11 2 2 0 0 0 0
..................................GGTTTGACCGCGGATTCATAT.................................................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0
..........................................................................................................................................................................................TGGAGCATGGGTGCCGGGCGT............................................ 21 0 20 0.10 2 2 0 0 0 0
.....................................TTGACCGCGGATTCATATTT.................................................................................................................................................................................................. 20 0 20 0.10 2 1 1 0 0 0
.............................................................................................................................................................................................AGCTTGGGTGCCGGGGTTG........................................... 19 3 20 0.10 2 0 0 0 2 0
.......................TCCCAAGTTACGGTTTGACCGCGGATT......................................................................................................................................................................................................... 27 0 20 0.10 2 1 0 1 0 0
.................................................TCATATTTCCGGGCATATTTTATT.................................................................................................................................................................................. 24 0 20 0.10 2 1 1 0 0 0
.............................................................................................................................................................................................AGCTTGGGCGCCGGGGGTG........................................... 19 3 20 0.10 2 1 0 0 1 0
.........................................................................................................................................................................................GTGGAGCATGGGTGCCGGGCG............................................. 21 0 20 0.10 2 2 0 0 0 0
....................................TTTGACCGCGGATTCATATTT.................................................................................................................................................................................................. 21 0 20 0.10 2 1 1 0 0 0
.........................................................................................................................................CGGAAGTTATCACTGCTGT............................................................................................... 19 0 20 0.10 2 0 2 0 0 0
.............TACGGTTGCTTCCCAAGTTACGGTTT.................................................................................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0
..................................................................................................................GGCGGCCAGACCGACTGAATTTCCGGA.............................................................................................................. 27 0 12 0.08 1 0 1 0 0 0
..................................................................................................................GGCGGCCAGACCGACTGAATTTCCGGAA............................................................................................................. 28 0 12 0.08 1 1 0 0 0 0
............................................................................................................CTGCATGGCGGCCAGACCGACTGAATT.................................................................................................................... 27 0 14 0.07 1 1 0 0 0 0
...................................................................................................................................................................................................................CGGTGACTAATTGCTAGAAAGTT................. 23 0 14 0.07 1 1 0 0 0 0
..............................................................................................................GCATGGCGGCCAGACCGACTGAATTT................................................................................................................... 26 0 14 0.07 1 1 0 0 0 0
...................................................................................................................................................................................................................CGGTGACTAATTGCTAGAAAGTTCC............... 25 0 14 0.07 1 1 0 0 0 0
.................................................................................................................TGGCGGCCAGACCGACTGAATT.................................................................................................................... 22 0 14 0.07 1 0 1 0 0 0
...................................................................................................................................................................................................................CGGTGACTAATTGCTAGAAAGT.................. 22 0 14 0.07 1 1 0 0 0 0
..................................................................................................................................................................................................................CCGGTGACTAATTGCTAGAAGGT.................. 23 1 14 0.07 1 1 0 0 0 0
.................................................................................................................................................................................................................GCCGGTGACTAATTGCTAGAAAGTT................. 25 1 14 0.07 1 0 0 1 0 0
...................TGCTTCCCAAGTTACGGTTTGACCGC.............................................................................................................................................................................................................. 26 0 15 0.07 1 1 0 0 0 0
...................TGCTTCCCAAGTTACGGTTTGACCG............................................................................................................................................................................................................... 25 0 15 0.07 1 1 0 0 0 0
.....................................................................................................................GGCCAGACCGACTGAATTTCCG................................................................................................................ 22 0 15 0.07 1 1 0 0 0 0
......................................................................................................................................TTCCGGAACTTATCACTGCTGTTGCT........................................................................................... 26 1 15 0.07 1 0 1 0 0 0
..................TTGCTTCCCAAGTTACGGTTT.................................................................................................................................................................................................................... 21 0 15 0.07 1 1 0 0 0 0
..................TTGCTTCCCAAGTTACGGTTTGACCGC.............................................................................................................................................................................................................. 27 0 15 0.07 1 1 0 0 0 0
.........................TCAAGTTACGGTTTGACCGCGGATTCAT...................................................................................................................................................................................................... 28 1 16 0.06 1 0 1 0 0 0
..............................................................................................................................GACTGAATTTCCGGAAGTTATCACTGC.................................................................................................. 27 0 16 0.06 1 1 0 0 0 0
................................................................................................................................CTGAATTTCCGGAAGTTATCACTGCTG................................................................................................ 27 0 16 0.06 1 1 0 0 0 0
..............................................................................................................................GACTGAATTTCCGGAAGTTATCACTGCT................................................................................................. 28 0 16 0.06 1 1 0 0 0 0
...............................................................................ATCTGATGTTCTTCGGGTCCCCGCAC.................................................................................................................................................. 26 0 16 0.06 1 1 0 0 0 0
.........................CCAAGTTACGGTTTGACCGCGGATTCA....................................................................................................................................................................................................... 27 0 16 0.06 1 0 1 0 0 0
.........AGATTACGGTTGCTTCCCAA.............................................................................................................................................................................................................................. 20 0 16 0.06 1 0 1 0 0 0
................................................................................................................................ATGAATTTCCGGAAGTTATCACTGCTG................................................................................................ 27 1 16 0.06 1 1 0 0 0 0
...............................................................................ATCTGATGTTCTTCGCGTCCCCGCACT................................................................................................................................................. 27 1 16 0.06 1 1 0 0 0 0
.................................................................................................................................TGAATTTCAGGAAGTTATCACTGCT................................................................................................. 25 1 16 0.06 1 1 0 0 0 0
...............................................................................................................................ACTGAATTTCAGGAAGTTATCACTGCT................................................................................................. 27 1 16 0.06 1 1 0 0 0 0
.................................................................................................................................TGAATTTCCGGAAGTTATCACTGC.................................................................................................. 24 0 16 0.06 1 1 0 0 0 0
..............................................................................ATTCTGATGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 28 1 16 0.06 1 1 0 0 0 0
...............................................................................TTCTGATGTTCTTCGGGTCCCCGCAC.................................................................................................................................................. 26 1 17 0.06 1 0 1 0 0 0
.................................................................................CTGAAGTTCTTCGGGTCCCCGCA................................................................................................................................................... 23 1 17 0.06 1 1 0 0 0 0
...................................................................................GATGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 23 0 17 0.06 1 1 0 0 0 0
.................................................................................CTAATGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 25 1 17 0.06 1 0 1 0 0 0
.........................................................................................................................AGACCGACTGAATTTCCGGAAGTTAT........................................................................................................ 26 0 17 0.06 1 0 1 0 0 0
........................................................................................................................CAGACCGACTGAATTTCCGGAAGTTA......................................................................................................... 26 0 17 0.06 1 1 0 0 0 0
.............................................................................CAATCTGAAGTTCTTCGGGTCCCCGCAC.................................................................................................................................................. 28 1 17 0.06 1 1 0 0 0 0
........................................................................................................................CAGACCGACTGAATTTCCGGAAGTTAT........................................................................................................ 27 0 17 0.06 1 0 1 0 0 0
................................................................................GCTGATGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 26 1 17 0.06 1 1 0 0 0 0
..................................................................................TGAAGTTCTTCGGGTCCCCGCACT................................................................................................................................................. 24 1 18 0.06 1 0 1 0 0 0
...............................TACGGTTTGACCGCGGATTCATATTTC................................................................................................................................................................................................. 27 0 19 0.05 1 1 0 0 0 0
...............................TACGGTTTGACCGCGGATTAATAT.................................................................................................................................................................................................... 24 1 19 0.05 1 1 0 0 0 0
............................................................................................................................CCGACTGAATTTCAGGAAGTTATCACT.................................................................................................... 27 1 19 0.05 1 1 0 0 0 0
...........................................................................................................................ACCGACTGAATTTCCGGAAGTTATCAC..................................................................................................... 27 0 19 0.05 1 1 0 0 0 0
...............................TACGGTTTTACCGCGGATTCATATTT.................................................................................................................................................................................................. 26 1 19 0.05 1 1 0 0 0 0
.............................................................................................................................CGACTGAATTTCTGGAAGTTATCACT.................................................................................................... 26 1 19 0.05 1 0 1 0 0 0
...........................................................................................................................ACCGACTGAATTTCAGGAAGTTATCACT.................................................................................................... 28 1 19 0.05 1 1 0 0 0 0
...........................................................................................................................TCCGACTGAATTTCCGGAAGTTATCACT.................................................................................................... 28 1 19 0.05 1 1 0 0 0 0
................................ACGGTTTGACCGCGGATTCATATC................................................................................................................................................................................................... 24 1 19 0.05 1 0 1 0 0 0
..............................ATACGGTTTGACAGCGGATTCATATT................................................................................................................................................................................................... 26 2 19 0.05 1 0 1 0 0 0
..............................ATACGGTTTGACCGCGGATTCATATT................................................................................................................................................................................................... 26 1 19 0.05 1 0 1 0 0 0
.............................GTTACTGTTTGACCGCGGATTCATAT.................................................................................................................................................................................................... 26 1 19 0.05 1 0 1 0 0 0
...............................................................................................................................................................TTGATGGTCTTGAGCCAGAAAGAC.................................................................... 24 1 19 0.05 1 1 0 0 0 0
.............................................................................................................................CGACTGAATTTCCGGAAGTTATCAC..................................................................................................... 25 0 19 0.05 1 1 0 0 0 0
................................................................................................................................CTGAATTTCCGGAAGTTATC....................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
..................................................CATATTTCCGGGCATATTTTATTAGTC.............................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
.............................GTTACGGTTTGACCGCGGATTC........................................................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................GACTGAATTTCCGGGAGTTATCACT.................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................AGACTGAATTTCCGCAAGT........................................................................................................... 19 2 20 0.05 1 1 0 0 0 0
.......................................................................................................................................TCCGGAAGTTATCACTGCTG................................................................................................ 20 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................TGACCGACTGAATTTCCGGAAGTTAT........................................................................................................ 26 1 20 0.05 1 0 1 0 0 0
................................ACGGTTTGACCGCGGACTCAT...................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
.........................................CCGCGGATTCATATTTCCGGGCATAT........................................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0
.............................GTTACGGTTTGACCGCGGATTCATA..................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
...............................TCCGGTTTGACCGCGGATTCATAT.................................................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0
.................................................TCATATTTCCGGGCATATTTTA.................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................GGTCTTGAGCCAGAAAGACTA.................................................................. 21 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................GGAGCATGGGTGCCGGGCGT............................................ 20 0 20 0.05 1 0 1 0 0 0
................................................................................................................................CCGACTTTCCGGAAGTTATCACT.................................................................................................... 23 2 20 0.05 1 1 0 0 0 0
.............................................................................................................................CGACTGAATTTCCGGAAGTTACCACT.................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................................TGTGGAGCATGGGTGCCGGGCG............................................. 22 0 20 0.05 1 1 0 0 0 0
.....................................................ATTTCCGGGCATATTTTATTAGT............................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................CCGGAAGTTATCACTGCTGT............................................................................................... 20 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................GGTCTTGAGCCAGAAAGACT................................................................... 20 0 20 0.05 1 1 0 0 0 0
.........................................................CCGGGCATATTTTATTAGTTC............................................................................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0
.....................................................................................................................................................................GTCTTGAGCCAGAAAGACT................................................................... 19 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................GACCGACTGAATTTCCGGAAGTTAT........................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
................................................TTCATATTTCCGGGCATATTTTATT.................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
................................ACGGTTTGACCGCGGATTCAT...................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................AGCATGGGTGCTGGGGTTG........................................... 19 3 20 0.05 1 0 0 0 1 0
........................................................................................................................................................................................TGTGGAGCATGGGTTCCGGGCGT............................................ 23 1 20 0.05 1 0 1 0 0 0
......................TTCCCAAGTTACGGTTTGACCGCGGAT.......................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................ACCTGTGGAGCATGGGTGCCGGGCGT............................................ 26 1 20 0.05 1 1 0 0 0 0
.................................................TCATATTTCCGGGCATATTTTATTAG................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................ATCATGTGGAGCATGGGTGCCGGGCGT............................................ 27 3 20 0.05 1 0 1 0 0 0
........................................................................................................................................CCTGAAGTTATCACTGCTGT............................................................................................... 20 1 20 0.05 1 1 0 0 0 0
.................................CTGTTTGACCGCGGATTCATATT................................................................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0
..............................................................................................................................GACTGAATTTCCGGAAGTTATCACT.................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................GCCGACTGAATTTCCGGAAGTTATCA...................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
...............................TACGGTTTGACCGCGGATTCAT...................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................GACTGAATCTCCGCAAGTTG......................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................GGAGCATGGGTGCCGGGCGTGC.......................................... 22 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................CGACTGAATTTCCGGAAGTTATCA...................................................................................................... 24 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000002720:977-1227 - dwi_276 TATGTGCTCTCTAATGCCAACGAAGGGTTCAATGCCAAACTGGCGCCTAAGTATAAAGGCCCGTATAAAATAATCAAGTTAGACTACAAGAAGCCCAGGGGCGTGAGCGACGTACCGCCGGTCTGGCTGACTTAAAGGCCTTCAATAGTGACGACAACGAACGACCAGAACTCGGTCTTTCTGAACACCTCGTACCCACGGCCCGCACGGGGCCACTGATTAACGATCTTTCAAGGGGGAGCACTTGTTGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TATGTGCTCTCTAATGCCAACGAAGGGTTCAATGCCAAACTGGCGCCTAAGTATAAAGGCCCGTATAAAATAATCAAGTTAGACTACAAGAAGCCCAGGGGCGTGAGCGACGTACCGCCGGTCTGGCTGACTTAAAGGCCTTCAATAGTGACGACAACGAACGACCAGAACTCGGTCTTTCTGAACACCTCGTACCCACGGCCCGCACGGGGCCACTGATTAACGATCTTTCAAGGGGGAGCACTTGTTGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................TAAAGGCCTTCAATAGTGACGACAACG............................................................................................2741.25500050
....................................................................................................................................TAAAGGCCTTCAATAGTGACGACAAC.............................................................................................2640.25100010
....................................................................................................................................TAAAGGCCTTCAATAGTGACGACAACGA...........................................................................................2840.25101000
........................................................................................................................................................................................ACACCTCGTACCCACGGCCCGCACG..........................................25200.20404000
.............................................................................................................................GCTGACTTAAAGGCCTTCAATAGTGA....................................................................................................26190.16303000
.....................GAAGGGTTCAATGCCAAACTGGCG..............................................................................................................................................................................................................24200.15303000
........................................................................................................................................................................................ACACCTCGTACCCACGGCCCGCAC...........................................24200.15303000
....................................................................................TACAAGAAGCCCAGGGGCGTGAGCG..............................................................................................................................................2570.14100010
..................................................................................................GGGCGTGAGCGACGTACCGCCGGTC................................................................................................................................2580.13101000
..................................................................................ACTACAAGAAGCCCAGGGGCGTGA.................................................................................................................................................24170.12201010
.................................................................................GACTACAAGAAGCCCAGGGGC.....................................................................................................................................................21170.12201010
.......................................................................................................................................AGGCCTTCAATAGTGACGACAACG............................................................................................2490.11101000
.....................GAAGGGTTCAATGCCAAACTGGC...............................................................................................................................................................................................................23200.10202000
.............................................................................................................................GCTGACTTAAAGGCCTTCAATAGT......................................................................................................24200.10202000
.........................................................................................................................................................................................CACCTCGTACCCACGGCCCGCACG..........................................24200.10202000
...........................................................................................................CGACGTACCGCCGGTCTG..............................................................................................................................18130.08101000
..............TGCCAACGAAGGGTTCAATGCCAAAC...................................................................................................................................................................................................................26140.07100010
.................................................................................................................ACCGCCGGTCTGGCTGACTTAAAG..................................................................................................................24140.07101000
..............TGCCAACGAAGGGTTCAATGC........................................................................................................................................................................................................................21140.07100010
..............TGCCAACGAAGGGTTCAATGCCA......................................................................................................................................................................................................................23140.07101000
................................................................................................................................GACTTAAAGGCCTTCAATAGTGACGA.................................................................................................26160.06101000
.................................................................................GACTACAAGAAGCCCAGGGGCGT...................................................................................................................................................23160.06100100
.................................................................................GACTACAAGAAGCCCAGGGGCGTGA.................................................................................................................................................25160.06101000
.................................................................................GACTACAAGAAGCCCAGGGGCGTG..................................................................................................................................................24160.06101000
..............................................................................................................................CTGACTTAAAGGCCTTCAATAGTGACGA.................................................................................................28160.06101000
...............................................................................TAGACTACAAGAAGCCCAGGGGCGT...................................................................................................................................................25160.06101000
.....................................................................................................................................AAAGGCCTTCAATAGTGACGAC................................................................................................22170.06101000
...............................................................................TAGACTACAAGAAGCCCAGGGGCG....................................................................................................................................................24170.06101000
..............................................................................TTAGACTACAAGAAGCCCAGGGG......................................................................................................................................................23170.06101000
..............................................................................TTAGACTACAAGAAGCCCAGGGGC.....................................................................................................................................................24170.06101000
..............................................................................................................................CTGACTTAAAGGCCTTCAATA........................................................................................................21200.05101000
..............................................................................................................................CTGACTTAAAGGCCTTCAATAGTGA....................................................................................................25200.05101000
..............................................................................................................................CTGACTTAAAGGCCTTCAATAGT......................................................................................................23200.05101000
.........................................................................................................................................................................................CACCTCGTACCCACGGCCC...............................................19200.05101000
.............................................CCTAAGTATAAAGGCCCGTATAAAAA....................................................................................................................................................................................26200.05101000
.................................GCCAAACTGGCGCCTAAGTATAAAG.................................................................................................................................................................................................25200.05101000
..............................................................................................................................CTGACTTAAAGGCCTTCAATAG.......................................................................................................22200.05101000
........................GGGTTCAATGCCAAACTGGCG..............................................................................................................................................................................................................21200.05101000
..............................................................................................................................CTGACTTAAAGGCCTTCAATAGTG.....................................................................................................24200.05101000
.............................................................................................................................GCTGACTTAAAGGCCTTCAATA........................................................................................................22200.05101000

Generated: 05/17/2015 at 10:34 PM