ID:

dwi_274

 Coordinate:

scf2_1100000002710:10732-10882 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.3 -24.3 -24.0

Flybase annnotation

exon [dwil_GLEANR_1466:1]; CDS [Dwil\GK14336-cds]; intron [Dwil\GK14336-in]

No Repeatable elements found

mature
  1. scf2_1100000007905:541-558 +
  2. dwi_274  scf2_1100000002710:10847-10864 -
  3. scf2_1100000003108:530-547 +
  4. scf2_1100000011060:535-552 -
  5. scf2_1100000001940:6858-6875 +
  6. scf2_1100000003747:4005-4022 -
  7. scf2_1100000006477:170-187 -
  8. scf2_1100000004514:687054-687071 -
  9. scf2_1100000004888:491906-491923 -
  10. scf2_1100000004947:103814-103831 -
  11. scf2_1100000004954:393197-393214 -
star
  1. scf2_1100000007905:648-673 +
  2. scf2_1100000002758:2235-2260 +
  3. scf2_1100000002873:1727-1752 +
  4. scf2_1100000001457:1315-1340 +
  5. scf2_1100000003108:637-662 +
  6. scf2_1100000001621:3559-3584 +
  7. scf2_1100000001940:6965-6990 +
  8. scf2_1100000004440:1406-1431 +
  9. scf2_1100000004585:1354639-1354664 +
  10. scf2_1100000004590:3169052-3169077 +
  11. scf2_1100000004678:13193-13218 +
  12. scf2_1100000004854:360613-360638 +
  13. scf2_1100000004912:17023-17048 +
  14. scf2_1100000004953:76569-76594 +
  15. scf2_1100000004953:78446-78471 +
  16. scf2_1100000004958:2551200-2551225 +
  17. scf2_1100000004966:158643-158668 +
  18. scf2_1100000000422:457-482 +
  19. scf2_1100000000154:3005-3030 +
  20. scf2_1100000000632:4469-4494 +
  21. dwi_274  scf2_1100000002710:10741-10766 -
  22. scf2_1100000008274:828-853 -
  23. scf2_1100000011060:420-445 -
  24. scf2_1100000001940:5989-6014 -
  25. scf2_1100000011303:331-356 -
  26. scf2_1100000003747:3890-3915 -
  27. scf2_1100000011656:349-374 -
  28. scf2_1100000006477:55-80 -
  29. scf2_1100000004648:12418-12443 -
  30. scf2_1100000004768:2742819-2742844 -
  31. scf2_1100000004854:377751-377776 -
  32. scf2_1100000004888:491791-491816 -
  33. scf2_1100000004943:2538612-2538637 -
  34. scf2_1100000004947:103699-103724 -
  35. scf2_1100000004947:568385-568410 -
  36. scf2_1100000004912:50438-50463 -
  37. scf2_1100000004953:1300119-1300144 -
  38. dwi_3686  scf2_1100000004954:393082-393107 -
  39. scf2_1100000004961:3411555-3411580 -
  40. scf2_1100000007414:873-898 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GATCTGCTGTTTTGAAAAAGGCAAGCGGCCACCGATTCCACGACGCAAACGTAAGGAGCCGAAAGCCAAGTGTGAGGAGGAAGTTCAGTGTCCAGAGGAAGGCTGTTGTCCGATATATGTTGGCCGATTCTCAGTCCTACACGTTCTGCATAAAAAATTTCGGTCGAGCCGTTTCGGAGTAGTTTGGTAACAAACACCACACTCGAGAATTTTATATATATAGATTCATCATTATGGCGGCGCATTTGTGG
********************************************************************.((((.((((((((...((((.(((...)))..))))(((.(((((....))))).)))))))...))))))))....(((.((((..(((((((.((...))..)))))))..)))))))...*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 M020
head
................................................................................................................................................................................................................................TTCATCATTATGGCGGCGCATTTG... 24 0 12 0.58 7 4 3 0 0
.................................................................................................................................................................................................................................TCATCATTATGGCGGCGCATTTG... 23 0 12 0.50 6 4 2 0 0
.................................................................................................................................................................................................................................TCATCATTATGGCGGCGCATTTGTG. 25 0 12 0.42 5 2 3 0 0
.................................................................................................................................................................................................................................TCATCATTATGGCGGCGCATTTGT.. 24 0 12 0.33 4 4 0 0 0
.................................GATTCTACGACGGATACGT....................................................................................................................................................................................................... 19 3 20 0.20 4 4 0 0 0
....................................................................AGTGTGAGGAGGAAGTTC..................................................................................................................................................................... 18 0 11 0.18 2 0 0 0 2
................................................................................................................................................................................................................................TTCATCATTATGGCGGCGCATTTGTGG 27 0 12 0.17 2 1 1 0 0
................................................................................................................................................................................................................................TTCATCATTATGGCGGCGCATTTGTG. 26 0 12 0.17 2 0 2 0 0
...................................................................................................................................................................................................................................ATCATCATGGCGGCGCGT...... 18 2 16 0.13 2 2 0 0 0
...........................................................................................................................................................................................TAACAAACACCACACTCGAGAATTT....................................... 25 0 20 0.10 2 1 1 0 0
......................................................................................................................................................................AGCCGTTTCGGAGTAGTTTGGTAACA........................................................... 26 0 20 0.10 2 0 2 0 0
..............................................AAACGTAAGGCGCCGAAAGC......................................................................................................................................................................................... 20 1 11 0.09 1 0 0 1 0
................................................ACGTAGGGAGCCGAAAGG......................................................................................................................................................................................... 18 2 11 0.09 1 1 0 0 0
.................................................................................................................................................................................................................................TCATCATTATGGCGGCGCATT..... 21 0 12 0.08 1 0 1 0 0
.............................................................AAAGCCAAGAGAGAGGAGGAA......................................................................................................................................................................... 21 2 12 0.08 1 0 0 1 0
................................................................................................................................................................................................................................TTCATCATTATGGCGGCGCATTTGT.. 25 0 12 0.08 1 1 0 0 0
..................................................................................GTTCAGTGTCCAGAGGAAGG..................................................................................................................................................... 20 0 12 0.08 1 0 0 1 0
................................................................................................................................................................................................................................TTCATCATTATGGCGGCGCATTT.... 23 0 12 0.08 1 1 0 0 0
.................................................................................................................................................................................................................................TCATCATTATGGCGGCGCATTTGG.. 24 1 12 0.08 1 1 0 0 0
................................................................................................................................................................................................................................TTCATCATTATGGCGGCGCATT..... 22 0 12 0.08 1 1 0 0 0
................................................................................................................................................................................................................................TTCATCATTATGGCGGCGCAT...... 21 0 12 0.08 1 1 0 0 0
.......................................................................GTGAGTAGGAAGTTCAATG................................................................................................................................................................. 19 2 12 0.08 1 0 0 1 0
..................................................................................................................................................................................................................................CATCATTATGGCGGCGCATTTGT.. 23 0 12 0.08 1 1 0 0 0
..................................................................................................................................................................................................................................CATCATTACGGCGGCACAAT..... 20 3 19 0.05 1 0 0 1 0
...............................................................................................................................................................TCGGTCGAGCCGTTTCGGAGTAGT.................................................................... 24 0 20 0.05 1 1 0 0 0
.........................................................................................................................................................................CGTTTCGGAGTAGTTTGGTAACAAACA....................................................... 27 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................TCGGTCGAGCCGTTTCGGAGTAGTAA.................................................................. 26 2 20 0.05 1 1 0 0 0
...................................................................................................................................................................................................................................ATCATCATGGCGGCGCGTG..... 19 3 20 0.05 1 1 0 0 0
.........................................................................................................................................................................CGTTTCGGAGTAGTTTGGTAACAAACAC...................................................... 28 0 20 0.05 1 1 0 0 0
...........................................................................................................................................................................TTTCGGAGTAGTTTGCTAACAAACA....................................................... 25 1 20 0.05 1 0 1 0 0
................AAAGGCTGGCGGGCACCG......................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0
.................................................................................................................................................................GGTCGAGCCGTTTCGGAGTAGT.................................................................... 22 0 20 0.05 1 0 0 0 1
...........................................................................................................................................................................GTTCGGAGTAGTTTGGTAACAAACACC..................................................... 27 1 20 0.05 1 1 0 0 0

Anti-sense strand reads

CTAGACGACAAAACTTTTTCCGTTCGCCGGTGGCTAAGGTGCTGCGTTTGCATTCCTCGGCTTTCGGTTCACACTCCTCCTTCAAGTCACAGGTCTCCTTCCGACAACAGGCTATATACAACCGGCTAAGAGTCAGGATGTGCAAGACGTATTTTTTAAAGCCAGCTCGGCAAAGCCTCATCAAACCATTGTTTGTGGTGTGAGCTCTTAAAATATATATATCTAAGTAGTAATACCGCCGCGTAAACACC
***********************************************************.((((.((((((((...((((.(((...)))..))))(((.(((((....))))).)))))))...))))))))....(((.((((..(((((((.((...))..)))))))..)))))))...******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 M020
head
 V119
head
..................................................................................................................................................................CAGCTCGGCAAAGCCTCATCAAACCAT.............................................................. 27 0 20 6.05 121 120 0 1 0 0
...................................................................................................................................................................AGCTCGGCAAAGCCTCATCAAACCAT.............................................................. 26 0 20 4.00 80 69 8 3 0 0
.................................................................................................................................................................CCAGCTCGGCAAAGCCTCATCAAACCAT.............................................................. 28 0 20 2.00 40 38 2 0 0 0
....................................................................................................................................................................GCTCGGCAAAGCCTCATCAAACCAT.............................................................. 25 0 20 1.65 33 28 5 0 0 0
......................................................................................................................................................................TCGGCAAAGCCTCATCAAACCAT.............................................................. 23 0 20 0.75 15 13 2 0 0 0
.................................................................................................................................................................................................TGTGGTGTGAGCTCTTAAAATATAT................................. 25 0 20 0.70 14 0 14 0 0 0
.....................................................................................................................................................................................................GTGTGAGCTCTTAAAATATATATAT............................. 25 0 20 0.35 7 0 7 0 0 0
................................................................................................................................................................GCCAGCTCGGCAAAGCCTCATCAAACCAT.............................................................. 29 0 20 0.35 7 7 0 0 0 0
................................................................................................................................................................................................TTGTGGTGTGAGCTCTTAAAATATAT................................. 26 0 20 0.30 6 0 5 0 0 1
......................................................................................................................................................................TCGGCAAAGCCTCATCAAACCATTGT........................................................... 26 0 20 0.20 4 3 0 1 0 0
....................................................................................................................................................................................................GGTGTGAGCTCTTAAAATATATATAT............................. 26 0 20 0.20 4 0 3 1 0 0
.................................................................................................................................................................CCAGCTCGGCAAAGCCTCATCAAACCA............................................................... 27 0 20 0.20 4 4 0 0 0 0
...................................................................................................................................................................AGCTCGGCAAAGCCTCATCAAACCA............................................................... 25 0 20 0.20 4 4 0 0 0 0
.........................................................................................................................CCGGCTAAGAGTCAGGATGTG............................................................................................................. 21 0 20 0.15 3 0 0 0 3 0
.......................................................................................................................................................................CGGCAAAGCCTCATCAAACCATTGTT.......................................................... 26 0 20 0.15 3 3 0 0 0 0
..................................................................................................................................................................................................GTGGTGTGAGCTCTTAAAATATATAT............................... 26 0 20 0.10 2 0 2 0 0 0
................................................................................................................................................................................................TTGTGGTGTGAGCTCTTAAAATAT................................... 24 0 20 0.10 2 0 2 0 0 0
...................................................................................................................................................................................................TGGTGTGAGCTCTTAAAATATATAT............................... 25 0 20 0.10 2 0 2 0 0 0
....................................................................................................................................................................................................GGTGTGAGCTCTTAAAATATATATATCT........................... 28 0 20 0.10 2 0 2 0 0 0
.....................................................................................................................................................................................................GTGTGAGCTCTTAAAATATATATATCT........................... 27 0 20 0.10 2 0 2 0 0 0
..................................................................................................................................................................CAGCTCGGCAAAGCCTCATCAAACCATT............................................................. 28 0 20 0.10 2 2 0 0 0 0
.....................................................................................................................................................................................CAAACCATTGTTTGTGGTGTGAGCTCT........................................... 27 0 20 0.10 2 1 1 0 0 0
.....................................................................................................................................................................CTCGGCAAAGCCTCATCAAACCA............................................................... 23 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................................................TTTGTGGTGTGAGCTCTTAAAATAT................................... 25 0 20 0.10 2 2 0 0 0 0
.................................................................................................................................................................CCAGCTCGGCAAAGCCTCATCA.................................................................... 22 0 20 0.10 2 2 0 0 0 0
..................................................................................................................................................................................................GTGGTGTGAGCTCTTAAAATATAT................................. 24 0 20 0.10 2 1 1 0 0 0
.................................................GCATTCCACGGCTTGCTGT....................................................................................................................................................................................... 19 3 15 0.07 1 0 1 0 0 0
...................................................................................................................................................................................................TGGTGTGAGCTCTTAAAATATATATAT............................. 27 0 19 0.05 1 0 1 0 0 0
.........................................................................................................................CCGGCTAAGAGTCAGGATGT.............................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................AGCTCGGCAAAGCCACATCAAACCAT.............................................................. 26 1 20 0.05 1 1 0 0 0 0
................................................................................................................................................................GCCAGCTCGGCAAAGCCTC........................................................................ 19 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................GCTCGGCAAAGCCTCATCAAACCATT............................................................. 26 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................AAAGCTCGGCAAAGCCTCATCAAACCAT.............................................................. 28 2 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................AGCTCAGCAAAGCCTCATCAAACCAT.............................................................. 26 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................CGGCTAAGAGTCAGTATGGGC............................................................................................................ 21 2 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................AAACCATTGTTTGTGGTGTGAGCTCT........................................... 26 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................CTCGGCAAAGCCTCATCAAACCATTGTT.......................................................... 28 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................GCTCGGCAAAGCCTCATCAAACCA............................................................... 24 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................CGGCAAAGCCTCATCAAACCATTGTTTGT....................................................... 29 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................CCAGCTCAGCAAAGCCTCATCAAACCAT.............................................................. 28 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................TTTGTGGTGTGAGCTCTTAAAATATAT................................. 27 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................CAGCTCGGCAAAGCCTCAT...................................................................... 19 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................TTTGTGGTGTGAGCTCTTA......................................... 19 0 20 0.05 1 0 0 1 0 0
...............................................................................................................................................................AGCCAGCTCGGCAAAGCCTCATC..................................................................... 23 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................GCTCGGCAAAGCCTCATCAAACTAT.............................................................. 25 1 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................GTGGTGTGAGCTCTTAAAATATATA................................ 25 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................AGCTCAGCAAAGCCTCATCAAACC................................................................ 24 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................ACAACCGGCTAAGAGTCAGGA................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
.................................................GCATTCCACGGCTTGCTG........................................................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0
.......................................................................................................................AACCGGCTAAGAGTCAGGATG............................................................................................................... 21 0 20 0.05 1 0 0 0 1 0
........................................................................................................................................................................................ACCATTGTTTGTGGTGTGAGCTCTT.......................................... 25 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................TGTGGTGTGAGCTCTTAAAATAT................................... 23 0 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................................................TGTTTGTGGTGTGAGCTCT........................................... 19 0 20 0.05 1 0 0 1 0 0
....................................................................................................................................................................................................GGTGTGAGCTCTTAAAATATATATA.............................. 25 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................TCAGCTCGGCAAAGCCTCATCAAACCAT.............................................................. 28 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................GGTGTGAGCTCTTAAAATAT................................... 20 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................CCTCGGCAAAGCCTCATCAAACCAT.............................................................. 25 1 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................GGCAAAGCCTCATCAAACCATTGTTTGT....................................................... 28 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................GTTTGTGGTGTGAGCTCTTAAAAT..................................... 24 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................TCGGCAAAGCCTCATCAAACCATTGTT.......................................................... 27 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................AACCATTGTTTGTGGTGTGAGGTCTT.......................................... 26 1 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................CCAGCTCGGCAAAGCCTCATCAAACCATT............................................................. 29 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................TCGGCAAAGCCTCATCAAACCATTGTTT......................................................... 28 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................CCAGCTCGGCAAAGCCACATCAAACCAT.............................................................. 28 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................CTCGGCAAAGCCTCATCAAACCATT............................................................. 25 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................CCCACCTCGGCAAAGCCTCATCAAACCAT.............................................................. 29 2 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................CTCGGCAAAGCCTCATCAAACCAT.............................................................. 24 0 20 0.05 1 0 1 0 0 0
...............................................................................................................................................................AGCCAGCTCGGCAAAGCCTCATCAAACCA............................................................... 29 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................AAAACCATTGTTTGTGGTGTGAGCTCT........................................... 27 1 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................CAGCTCAGCAAAGCCTCATCAAACCAT.............................................................. 27 1 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................CGGCAAAGCCTCATCAAACCA............................................................... 21 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................TCGGCAAAGCCTCATCAAACC................................................................ 21 0 20 0.05 1 0 0 0 1 0
.................................................................................................................................................................................................TGTGGTGTGAGCTCTTAAAATATATAT............................... 27 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................AGCTCTGCAAAGCCTCATCAAACCAT.............................................................. 26 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................GTGAGCTCTTAAAATATATATATCT........................... 25 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................AGCTCGGCAAAGCCGCATCAAACCAT.............................................................. 26 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................GCTCGGCAAAGCCGCATCAAACCAT.............................................................. 25 1 20 0.05 1 1 0 0 0 0
....................................................................................................................TACAACCGGCTAAGAGTCAGGATGT.............................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................GCCAGCTCGGCAAAGCCTCATCA.................................................................... 23 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................CCAGCTCGGCAAAGCCCCATCAAACCAT.............................................................. 28 1 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000002710:10682-10932 - dwi_274 GATCTGCTGTTTTGAAAAAGGCAAGCGGCCACCGATTCCACGACGCAAACGTAAGGAG-------------CCGAAAGCC--AAGTGTGAGGAGGAAGT-----------------TCAGTGTCCAGAGGAAGGCTGTTGTCCGATATATGTTGGCCGATTCTCAGTCCTACACGTTCTGCATAAAAAATTT---------CGGTCGAGCCGTTTCGGAGTAGTTTGGTAACAAACACCAC-ACTCGAGAATTTTATATATATAGATT-----CATCATTATGGCGGCGCATTTGTGG
droVir3 scaffold_12875:9301483-9301599 - GATCTGTTGCCATGTCAAGGATACGCGCCCACCTTTTGAGCGTCGCAAGCCCAAGGAG----A-GACCCAGCACGGCC---------------------TGCAAGCCACCCCTTGAAAAGTGT---GAGGAATTGGAATGTCCAAA--------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:24849419-24849549 + TAGATGTTG-------------------------------------------------------------------------------------------------------------------------------------------------GCCGATTCTCAGATCTACCAAAACTGCACACAAAATTTCTTGAGAATCGGTCGAACCGTTTCGGAAGAGTTTGGCAACAAACACCGCAACACGAGAACTCTATATAT-AAGATT-----TTTATTT----------------AT
droGri2 scaffold_3063:5558-5611 - GATATGTTGCTATATCACGTCAGAGCGTCCTCCTTTTGAGCGTCGCCAGCGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_103:11095-11256 - GTACC------------CGAAGGAGTGGTC---------------------TTATCGTGATGAAAA------------------------------------------------------------------------------ATAGATGTTGGTCGATGCGCAGACCTCACCGATAAGCACACAAAATTTCACGACAACCGGTCAAGCCATTTCGGAGGAGTTAAGCCACAAAATTTGTGA-ACGAGAATTTCATATAT-TAAATC-----CATTG------------------TT
droPer2 scaffold_2:2409631-2409785 + GATCTGCTGCTACGAGCCGGGGAAGCGGCCGCCCATTGCCCGTCGCAAGCGCAAGGTG----AAGGACGAGTGCGTCGAGGA-----------------CA--------------AGCCCTGCCCCTCGGAGGGACCGTGCCC---------------------------------------------------------------------------------------AAAGATA---------GAAAGTCCCGGATGT-CGGCCG--------GTTAGGAA--TCCCACGCG-CT
droAna3 scaffold_13333:310187-310332 - A------------------------------------------------------------------------------------------------------------------------------------------------TAGATGTTGGCCGATTCTCATAGATACCGGATAAGCACAAAAAATTTCATCAAAATCGGTCAAGCCGTTTCGGAGGAGTATGGTAACGAAAACTGTGACACGAGAATTTTATATAT-TAGATT-----GACTTTTATAA--TCACATTAGTTG
droBip1 scf7180000395087:22412-22593 - AGTGTGATG-----AGGTAGTAACTCACTTTAGG------AGGCACAGGATTTAGGAGGATGAAAA------------------------------------------------------------------------------ATAGATGTTGGCGGATTCTCAGACCTACTCAATACGCTCACAAAATTTCATGAGAATCGGTATAGCCGTTTCGGAGGAGTATGCTAACAAAAACTGTGACACAACAATTTTACATATATAGATA-----------T----------------AT
droKik1 scf7180000302277:110467-110523 + GATCTGCTGCCACATAAAGGCCAAGCACCCGCCCATTCAGCGTCGCAAGCGCAAGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454160:5669-5805 - A------------------------------------------------------------------------------------------------------------------------------------------------TAGATGTTGGTTGATTCTCAGACCTATGCAATACGCTCACAAAATTTCATGAGAATCGGTATAGCCGTTTCGGAGGAGTATGGTAACAAAAACTGTGACACGAGAATTTTATATAT-TAGATA-------ACATTATGGCAT---------CG
droEle1 scf7180000491240:1084342-1084461 + GATCTGCTGCTTCGAGGCGGCCACTCGTCCTCCAATCCCACGACGCAAGCGCAAAGTG-------------TTCGTTGCGGA-----------------CG--------------AAAAGTGTCCCACGGAACAGGTGTGTCCGGT---------------------------------------------------------------------------------------GGCC------------------------------GAGGGCC-TG-------TGT---------CC
droRho1 scf7180000770177:380321-380422 + GATCTGTTGCTTCGAGAAGGCCACCCGTCCGCCGATCCCGCGGCGCAAGCGCAAGGAG-------------TTCGTGGCGGC-----------------CG--------------TGGAGTGTCCCACGGAGAACGTGTGCCCGGT--------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302291:2127846-2127944 + GATCTGCTGCTTCGAGGCAGGCACTCGTCCGCCCATCCCGCGACGCAAGCGCAAGGAG-------------TTCGTGGCCGA-----------------CG--------------TCAAGTGTCCCACGGAGCACGTGTGTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415627:135378-135497 + GATCTGTTGCTACGAGGCGGGCACCCGTCCCCCGATTCCGCGGCGCAAGCGCAAAGTG-------------TTCGTCGCGGA-----------------CG--------------AAAAGTGTCCCACGGAGCAGGTGTGCCCGGT---------------------------------------------------------------------------------------GGCC------------------------------GAGGGCC-TC-------TGC---------CC
droEug1 scf7180000407691:124445-124511 + GATTTGCTGTTTCGAGGCGGGAAAACGTCCTCCAATCCCGCGGCGCAAGCGCAAGGAA-------------TTCGTAGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:4259128-4259235 + GATCTGCTGCTACGAGGCGGGAATTCGTCCGCCGATCCCAAGGCGCAAGCGCAAGAAG-------------TTCGTGACATC-----------------CG--------------CCGAGTGTCCCACGAATGTCGAATGCCCCAC----------------------------------------------------------------------GGAG----------------------------------------------------------------------------GG
droSim2 2r:5077554-5077611 + GATCTGCTGTTATGAGGCGGGAATTCGGCCGCCGATCCCACGGCGCAAGCGCAAGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1:1904886-1904943 + GATCTGCTGTTATGAGGCGGGAATTCGGCCGCCGATCCCACGGCGCAAGCGCAAGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2L:16915656-16915711 + GATCTGCTGCTATGAGGCGGGAGCTCGTCCGCCGATCCCACGGCGCAAGCGCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4929:18373118-18373231 - GATCTGCTGCTATGAGGCGGGCGCTCGTCCGCCGATCCCGCGGCGCAAGCGCAAGGAG-------------TTCGTGCCA--AAGTGCCAAGAGAATGT-----------------CGAATGTCCT----------------------------------------------------------------------------------------TCGGAGGAGGG-----------------------------------------------GG-AC-------TGC---------CC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GATCTGCTGTTTTGAAAAAGGCAAGCGGCCACCGATTCCACGACGCAAACGTAAGGAG-------------CCGAAAGCC--AAGTGTGAGGAGGAAGT-----------------TCAGTGTCCAGAGGAAGGCTGTTGTCCGATATATGTTGGCCGATTCTCAGTCCTACACGTTCTGCATAAAAAATTT---------CGGTCGAGCCGTTTCGGAGTAGTTTGGTAACAAACACCAC-ACTCGAGAATTTTATATATATAGATT-----CATCATTATGGCGGCGCATTTGTGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................TT-----CATCATTATGGCGGCGCATTTG...24120.58704030
...........................................................................................................................................................................................................................................................................T-----CATCATTATGGCGGCGCATTTG...23120.50604020
...........................................................................................................................................................................................................................................................................T-----CATCATTATGGCGGCGCATTTGTG.25120.42502030
...........................................................................................................................................................................................................................................................................T-----CATCATTATGGCGGCGCATTTGT..24120.33404000
...................................................................................AGTGTGAGGAGGAAGT-----------------TC....................................................................................................................................................................................18110.18220000
..........................................................................................................................................................................................................................................................................TT-----CATCATTATGGCGGCGCATTTGTGG27120.17201010
..........................................................................................................................................................................................................................................................................TT-----CATCATTATGGCGGCGCATTTGTG.26120.17200020
....................................................................................................................................................................................................................................TAACAAACACCAC-ACTCGAGAATTT............................................25200.10201010
...............................................................................................................................................................................................................AGCCGTTTCGGAGTAGTTTGGTAACA.................................................................26200.10200020
...........................................................................................................................................................................................................................................................................T-----CATCATTATGGCGGCGCATT.....21120.08100010
..........................................................................................................................................................................................................................................................................TT-----CATCATTATGGCGGCGCATTTGT..25120.08101000
.................................................................................................GT-----------------TCAGTGTCCAGAGGAAGG....................................................................................................................................................................20120.08100100
..........................................................................................................................................................................................................................................................................TT-----CATCATTATGGCGGCGCATTT....23120.08101000
...........................................................................................................................................................................................................................................................................T-----CATCATTATGGCGGCGCATTTGG..24120.08101000
..........................................................................................................................................................................................................................................................................TT-----CATCATTATGGCGGCGCATT.....22120.08101000
..........................................................................................................................................................................................................................................................................TT-----CATCATTATGGCGGCGCAT......21120.08101000
.................................................................................................................................................................................................................................................................................CATCATTATGGCGGCGCATTTGT..23120.08101000
...............................................................................................................................................................................................T---------CGGTCGAGCCGTTTCGGAGTAGT..........................................................................24200.05101000
..................................................................................................................................................................................................................CGTTTCGGAGTAGTTTGGTAACAAACA.............................................................27200.05101000
...............................................................................................................................................................................................T---------CGGTCGAGCCGTTTCGGAGTAGTAA........................................................................26200.05101000
..................................................................................................................................................................................................................CGTTTCGGAGTAGTTTGGTAACAAACAC............................................................28200.05101000
..........................................................................................................................................................................................................GGTCGAGCCGTTTCGGAGTAGT..........................................................................22200.05110000
droVir3
GATCTGTTGCCATGTCAAGGATACGCGCCCACCTTTTGAGCGTCGCAAGCCCAAGGAG----A-GACCCAGCACGGCC---------------------TGCAAGCCACCCCTTGAAAAGTGT---GAGGAATTGGAATGTCCAAA--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........ATGTCAAGGATACGCGCCCACCTTT......................................................................................................................................................................................................................................................................2514.004000000000000000000000000000030010000000000000000000000000000000
...........ATGTCAAGGATACGCGCCCAC..........................................................................................................................................................................................................................................................................2113.003000000000000000000001000000001100000000000000000000000000000000
......................................................................................................................AGTGT---GAGGAATTGGAAT...............................................................................................................................................................1813.003000000000100000000000000000002000000000000000000000000000000000
..................................................................................................................GAAAAGTGT---GAGGAATTG...................................................................................................................................................................1812.002000000000000000000000000000001010000000000000000000000000000000
......................................................................................................................AGTGT---GAGGAATTGGAATGTCCAAA--------------------------------------------------------------------------------------------------------------------------------------------------------2512.002000000000200000000000000000000000000000000000000000000000000000
...........ATGTCAAGGATACGCGCCC............................................................................................................................................................................................................................................................................1912.002000000000000000000001000000010000000000000000000000000000000000
..................................................................................................................GAAAAGTGT---GAGGAATTGGAAT...............................................................................................................................................................2212.002000000000100000000000000000000000100000000000000000000000000000
........GCCATGTCAAGGATACGCGCC.............................................................................................................................................................................................................................................................................2112.002000000010000000000000000000010000000000000000000000000000000000
.....................................................................................................................AAGTGT---GAGGAATTGGAA................................................................................................................................................................1812.002000000020000000000000000000000000000000000000000000000000000000
...................................................................................................................AAAAGTGT---GAGGAATTGGAA................................................................................................................................................................2012.002000000000200000000000000000000000000000000000000000000000000000
.........................................GTCGCAAGCCCAAGGAG----A-GACCCAGC..................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
...........ATGTCAAGGATACGCGCCCACC.........................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................AAGTGT---GAGGAATTGGAATGTCC...........................................................................................................................................................2311.001000000000000000000000000000010000000000000000000000000000000000
.................AGGATACGCGCCCACCTTTTG....................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................AAAGTGT---GAGGAATTGGAATGT.............................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................GT---GAGGAATTGGAATGTCC...........................................................................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
.......................CGCGCCCACCTTTTGAGC.................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................GAAAAGTGT---GAGGAATTGGAATG..............................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
............................CCACCTTTTGAGCGTCGCAAGCCCAAGG..................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................CCCTTGAAAAGTGT---GAGG........................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................TGAAAAGTGT---GAGGAATTGGAAT...............................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
..TCTGTTGCCATGTCAAGGATACGC................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
..TCTGTTGCCATGTCAAGGATACG.................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................AGTGT---GAGGAATTGGAATGTCCA..........................................................................................................................................................2311.001000000000100000000000000000000000000000000000000000000000000000
....................ATACGCGCCCACCTTTTGAGCGTCGCA...........................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
...........ATGTCAAGGATACGCGCCCACCT........................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................AGTGT---GAGGAATTGGAATGTCC...........................................................................................................................................................2211.001000000010000000000000000000000000000000000000000000000000000000
........................................................................................................GCCACCCCTTGAAAAGTGT---GAGGAATT....................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................AGCACGGCC---------------------TGCAAGCCACCC...........................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................AAAAGTGT---GAGGAATTGGAATG..............................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
....................................................AAGGAG----A-GACCCAGCACGGCC---------------------TGCA...................................................................................................................................................................................................2511.001000000010000000000000000000000000000000000000000000000000000000
..........CATGTCAAGGATACGCGCCCACCT........................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................TTGAAAAGTGT---GAGGAAT.....................................................................................................................................................................1811.001000001000000000000000000000000000000000000000000000000000000000
............................................GCAAGCCCAAGGAG----A-GACCC.....................................................................................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
.......TGCCATGTCAAGGATACG.................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
................AAGGATACGCGCCCACCT........................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000100000000000000000000000000000
.........CCATGTCAAGGATACGCG...............................................................................................................................................................................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
...............................................................................................................CTTGAAAAGTGT---GAGGAATTG...................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................AGTGT---GAGGAATTGGAATGTCCAA.........................................................................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
.........................................................................................................CCACCCCTTGAAAAGTGT---GA..........................................................................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
................................................GCCCAAGGAG----A-GACCCAGCACGGCC---------------------.......................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
..........................GCCCACCTTTTGAGCGTCGC............................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................CTTGAAAAGTGT---GAGGAATT....................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................TGAAAAGTGT---GAGGAATTGGA.................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
........................GCGCCCACCTTTTGAGCGTCGC............................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
...........ATGTCAAGGATACGCGCCCA...........................................................................................................................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
.........................................GTCGCAAGCCCAAGGAG----A-GACCCAG...................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................GAAAAGTGT---GAGGAATTGGAATGTCCA..........................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................AAGTGT---GAGGAATTGGAATGTCCAA.........................................................................................................................................................2511.001000001000000000000000000000000000000000000000000000000000000000
...............................................AGCCCAAGGAG----A-GACCCAG...................................................................................................................................................................................................................................1911.001000000000100000000000000000000000000000000000000000000000000000
...CTGTTGCCATGTCAAGGATACGC................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................TGT---GAGGAATTGGAATGTCC...........................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................TGAAAAGTGT---GAGGAATTGGAA................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.................AGGATACGCGCCCACCTTTTGAG..................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
...........ATGTCAAGGATACGCGCCCACCTTTTGA...................................................................................................................................................................................................................................................................2811.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................CCCCTTGAAAAGTGT---GAGGA.......................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
................................................................................................................TTGAAAAGTGT---GAGGAATTGGAATGTC............................................................................................................................................................2711.001000001000000000000000000000000000000000000000000000000000000000
..........................GCCCACCTTTTGAGCGTCGCA...........................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
TAGATGTTG-------------------------------------------------------------------------------------------------------------------------------------------------GCCGATTCTCAGATCTACCAAAACTGCACACAAAATTTCTTGAGAATCGGTCGAACCGTTTCGGAAGAGTTTGGCAACAAACACCGCAACACGAGAACTCTATATAT-AAGATT-----TTTATTT----------------ATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GATATGTTGCTATATCACGTCAGAGCGTCCTCCTTTTGAGCGTCGCCAGCGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
GTACC------------CGAAGGAGTGGTC---------------------TTATCGTGATGAAAA------------------------------------------------------------------------------ATAGATGTTGGTCGATGCGCAGACCTCACCGATAAGCACACAAAATTTCACGACAACCGGTCAAGCCATTTCGGAGGAGTTAAGCCACAAAATTTGTGA-ACGAGAATTTCATATAT-TAAATC-----CATTG------------------TTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GATCTGCTGCTACGAGCCGGGGAAGCGGCCGCCCATTGCCCGTCGCAAGCGCAAGGTG----AAGGACGAGTGCGTCGAGGA-----------------CA--------------AGCCCTGCCCCTCGGAGGGACCGTGCCC---------------------------------------------------------------------------------------AAAGATA---------GAAAGTCCCGGATGT-CGGCCG--------GTTAGGAA--TCCCACGCG-CTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................GTG----AAGGACGAGTGCGTCGAGGA-----------------CA--------------.......................................................................................................................................................................................2511.001000001
.......................................................................................................................CTGCCCCTCGGAGGGACCGTG..............................................................................................................................................................2111.001000001
........................................................TG----AAGGACGAGTGCGTCGTT..........................................................................................................................................................................................................................2020.501000001
droAna3
A------------------------------------------------------------------------------------------------------------------------------------------------TAGATGTTGGCCGATTCTCATAGATACCGGATAAGCACAAAAAATTTCATCAAAATCGGTCAAGCCGTTTCGGAGGAGTATGGTAACGAAAACTGTGACACGAGAATTTTATATAT-TAGATT-----GACTTTTATAA--TCACATTAGTTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
A------------------------------------------------------------------------------------------------------------------------------------------------TAGATGTTGGCCGATTCTCATAGATAC..............................................................................................................................28200.50100100000
.................................................................................................................................................TAGATGTTGGCCGATTCTCATAGATACC.............................................................................................................................28200.255500000
.....................................................................................................................................................................................................................TTCGGAGGAGTATGGTAACGAAAACT...........................................................26200.102020000
........................................................................................................................................................................................................TCGGTCAAGCCGTTTCGGAGGAGT..........................................................................24200.051010000
..................................................................................................................................................................TCATAGATACCGGATAAGCACA..................................................................................................................22200.051100000
........................................................................................................................................................................................................TCGGTCAAGCCGTTTCGGAGGAGC..........................................................................24200.051010000
...............................................................................................................................................................................................................................TATGGTAACGAAAACTGTGACACGAGAA...............................................28200.051100000
...............................................................................................................................................................................................................................TATGGTAACGAAAACTGTGACACGAG.................................................26200.051000010
........................................................................................................................................................................ATACCGGATAAGCACAAAAAATTTCATT......................................................................................................28200.051010000
A------------------------------------------------------------------------------------------------------------------------------------------------TAGATGTTGGCCGATTCTCATAGATT...............................................................................................................................27200.051010000
................................................................................................................................................................................................CATCAAAATCGGTCAAGCCGTTTCGG................................................................................26200.051100000
............................................................................................................................................................................................................TCAAGCCGTTTCGGAGGAGTATGGTA....................................................................26200.051100000
.................................................................................................................................................................................................................................................GACACGAGAATTTTATATAT-TAGATT-----.........................26200.051010000
...........................................................................................................................................................................................AATTTCATCAAAATCGGTCAAGCCGTT....................................................................................27200.051100000
droBip1
AGTGTGATG-----AGGTAGTAACTCACTTTAGG------AGGCACAGGATTTAGGAGGATGAAAA------------------------------------------------------------------------------ATAGATGTTGGCGGATTCTCAGACCTACTCAATACGCTCACAAAATTTCATGAGAATCGGTATAGCCGTTTCGGAGGAGTATGCTAACAAAAACTGTGACACAACAATTTTACATATATAGATA-----------T----------------ATSizeHit CountTotal NormTotal
No Reads
droKik1
GATCTGCTGCCACATAAAGGCCAAGCACCCGCCCATTCAGCGTCGCAAGCGCAAGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
A------------------------------------------------------------------------------------------------------------------------------------------------TAGATGTTGGTTGATTCTCAGACCTATGCAATACGCTCACAAAATTTCATGAGAATCGGTATAGCCGTTTCGGAGGAGTATGGTAACAAAAACTGTGACACGAGAATTTTATATAT-TAGATA-------ACATTATGGCAT---------CGSizeHit CountTotal NormTotal
No Reads
droEle1
GATCTGCTGCTTCGAGGCGGCCACTCGTCCTCCAATCCCACGACGCAAGCGCAAAGTG-------------TTCGTTGCGGA-----------------CG--------------AAAAGTGTCCCACGGAACAGGTGTGTCCGGT---------------------------------------------------------------------------------------GGCC------------------------------GAGGGCC-TG-------TGT---------CCSizeHit CountTotal NormTotal
No Reads
droRho1
GATCTGTTGCTTCGAGAAGGCCACCCGTCCGCCGATCCCGCGGCGCAAGCGCAAGGAG-------------TTCGTGGCGGC-----------------CG--------------TGGAGTGTCCCACGGAGAACGTGTGCCCGGT--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GATCTGCTGCTTCGAGGCAGGCACTCGTCCGCCCATCCCGCGACGCAAGCGCAAGGAG-------------TTCGTGGCCGA-----------------CG--------------TCAAGTGTCCCACGGAGCACGTGTGTCC-----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GATCTGTTGCTACGAGGCGGGCACCCGTCCCCCGATTCCGCGGCGCAAGCGCAAAGTG-------------TTCGTCGCGGA-----------------CG--------------AAAAGTGTCCCACGGAGCAGGTGTGCCCGGT---------------------------------------------------------------------------------------GGCC------------------------------GAGGGCC-TC-------TGC---------CCSizeHit CountTotal NormTotal
No Reads
droEug1
GATTTGCTGTTTCGAGGCGGGAAAACGTCCTCCAATCCCGCGGCGCAAGCGCAAGGAA-------------TTCGTAGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GATCTGCTGCTACGAGGCGGGAATTCGTCCGCCGATCCCAAGGCGCAAGCGCAAGAAG-------------TTCGTGACATC-----------------CG--------------CCGAGTGTCCCACGAATGTCGAATGCCCCAC----------------------------------------------------------------------GGAG----------------------------------------------------------------------------GGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..TCTGCTGCTACGAGGCGGGAATTCGTC.............................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.......................................................................TTCGTGACATC-----------------CG--------------CCGAGTGTCCCACGA........................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GTGACATC-----------------CG--------------CCGAGTGT...............................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCTGCTGCTACGAGGCGGGAATTCGTCCGC..........................................................................................................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................CATC-----------------CG--------------CCGAGTGTCCCACG.........................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TACGAGGCGGGAATTCGTCCGCCGA.......................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................G-------------TTCGTGACATC-----------------CG--------------CCGAGTGT...............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGCTACGAGGCGGGAATTCGTCCG...........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................CATC-----------------CG--------------CCGAGTGTCCCACGA........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TC-----------------CG--------------CCGAGTGTCCCACGAATGTCGAA................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................CCGATCCCAAGGCGCAAG.........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................ATC-----------------CG--------------CCGAGTGTCCCACGAATGTCGAA................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................ATGTCGAATGCCCCAC----------------------------------------------------------------------GGAG----------------------------------------------------------------------------G.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TGACATC-----------------CG--------------CCGAGTGTCCCACGAAT......................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................CATC-----------------CG--------------CCGAGTGTCCCACGAATG.....................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................ATC-----------------CG--------------CCGAGTGTCCCACGA........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ACATC-----------------CG--------------CCGAGTGTCCCACGAATG.....................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........TACGAGGCGGGAATTCGTCCGCCGATC.....................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATCTGCTGCTACGAGGCGGG.....................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCTGCTGCTACGAGGCGGGAATTCGTCCG...........................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................CG--------------CCGAGTGTCCCACGAATGT....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TCCGCCGATCCCAAGGCGCAAGCGCAAGG..................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TC-----------------CG--------------CCGAGTGTCCCACGAATGTCG..................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................CGTGACATC-----------------CG--------------CCGAGTGTCCCACG.........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGCTGCTACGAGGCGGGA....................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TTCGTGACATC-----------------CG--------------CCGAGTGTCCCACGAA.......................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................GACATC-----------------CG--------------CCGAGTGTCCCACGAA.......................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................C-----------------CG--------------CCGAGTGTCCCACGA........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................CGCAAGAAG-------------TTCGTGACATC-----------------C......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...CTGCTGCTACGAGGCGGGA....................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TC-----------------CG--------------CCGAGTGTCCCACGAATGTCGA.................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................CGAGTGTCCCACGAATGTC...................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TC-----------------CG--------------CCGAGTGTCCCACGAATGTCGAAT...............................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................CATC-----------------CG--------------CCGAGTGTCCCACGAATGTCGAAA...............................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GTGTCCCACGAATGTCGAA................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTCGTCCGCCGATCCCAAGGCGCAAGCG.......................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droSim2
GATCTGCTGTTATGAGGCGGGAATTCGGCCGCCGATCCCACGGCGCAAGCGCAAGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GATCTGCTGTTATGAGGCGGGAATTCGGCCGCCGATCCCACGGCGCAAGCGCAAGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GATCTGCTGCTATGAGGCGGGAGCTCGTCCGCCGATCCCACGGCGCAAGCGCAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GATCTGCTGCTATGAGGCGGGCGCTCGTCCGCCGATCCCGCGGCGCAAGCGCAAGGAG-------------TTCGTGCCA--AAGTGCCAAGAGAATGT-----------------CGAATGTCCT----------------------------------------------------------------------------------------TCGGAGGAGGG-----------------------------------------------GG-AC-------TGC---------CCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:34 PM