ID:

dwi_2734

 Coordinate:

scf2_1100000004909:5719921-5720071 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.4 -25.4 -25.3

Flybase annnotation

exon [dwil_GLEANR_9817:2]; CDS [Dwil\GK25670-cds]; intron [Dwil\GK25670-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey+
mature
star
  1. scf2_1100000004909:3798050-3798073 -
  2. dwi_2734  scf2_1100000004909:5719931-5719954 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TATTGGATGGAATACCAGCGCTAAAGAAACGCAAATCTTTAACAGTCTATGTGAGTCCCAAACAACAGCATCAGCAGCAGCAGCAGCAGACCTACCATCAACAGCAACAACAACATCAGAAGCACCAGCTACAGCAGCAACAACAGCAACAACAAATGCAGGCAACCCCATTGACAGGCGGTTGGGCAGCGTGTGGTGGCGGTAATAGTAACGCTGGCAGTAGTAGTGGTGTTGGTGGTGGCGAAACACTA
************************************************************..........((.((.((....)).)).))....((((((...((...............(((....)))......((.......)).........(((...(((((((.......)).))))).)))))...)))))).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M045
female body
 V118
embryo
...........................................................................................................................................................................................................AATAGTAACGCTGGCAGTAGTAGT........................ 24 0 1 1.00 1 1 0 0
.....................................................................................................................................................................................TTGGGCAGCGTGTGGTGGC................................................... 19 0 1 1.00 1 0 1 0
TATTGGATGGAATACCAGCGCTAAA.................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................................TAATAGTAACGCTGGCAGTA............................. 20 0 1 1.00 1 1 0 0
............................................................AACAACAGCATCAGCAGCAGCAGC....................................................................................................................................................................... 24 0 2 0.50 1 1 0 0
............................................................AACAACAGCATCAGCAGCAGC.......................................................................................................................................................................... 21 0 5 0.40 2 0 0 2
...............................................................AACAGCATCAGCAGCAGCAGCAGCA................................................................................................................................................................... 25 0 6 0.17 1 0 0 1
.............................................................ACAACAGCATCAGCAGCAGC.......................................................................................................................................................................... 20 0 6 0.17 1 0 0 1
..............................................................................................................................................................................CAGGCGGTAGGGGAGCGTT.......................................................... 19 3 14 0.14 2 1 1 0
...............................................................AACAGCATCAGCAGCAGCAGC....................................................................................................................................................................... 21 0 10 0.10 1 1 0 0
...........................................................................................................................ACCAGTTACAGCAGCAACAT............................................................................................................ 20 2 12 0.08 1 0 0 1
............TACCAGCACTAAAGCACCG............................................................................................................................................................................................................................ 19 3 12 0.08 1 0 1 0
............................................................AACAACAGCATCAGCAGC............................................................................................................................................................................. 18 0 16 0.06 1 0 0 1
.....................................................................................................................................GCAGCAACAACAGCAACAA................................................................................................... 19 0 20 0.05 1 0 1 0
..............................................................................................................................................................................CAGGCGGTAAGGCAGCGG........................................................... 18 3 20 0.05 1 0 1 0
....................................................................CATCAGCAGCAGCAGCAGCAG.................................................................................................................................................................. 21 0 20 0.05 1 0 1 0
................................................................ACAGCATCAGCAGCAGCA......................................................................................................................................................................... 18 0 20 0.05 1 0 0 1
.........................................................................................................................................................................................GCGGCGTGTGGTGGCTGGA............................................... 19 3 20 0.05 1 0 1 0
.....................................................................ATCAGCAGCAGCAGCAGC.................................................................................................................................................................... 18 0 20 0.05 1 0 0 1

Anti-sense strand reads

ATAACCTACCTTATGGTCGCGATTTCTTTGCGTTTAGAAATTGTCAGATACACTCAGGGTTTGTTGTCGTAGTCGTCGTCGTCGTCGTCTGGATGGTAGTTGTCGTTGTTGTTGTAGTCTTCGTGGTCGATGTCGTCGTTGTTGTCGTTGTTGTTTACGTCCGTTGGGGTAACTGTCCGCCAACCCGTCGCACACCACCGCCATTATCATTGCGACCGTCATCATCACCACAACCACCACCGCTTTGTGAT
***************************************************..........((.((.((....)).)).))....((((((...((...............(((....)))......((.......)).........(((...(((((((.......)).))))).)))))...)))))).************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M020
head
 M045
female body
 V117
male body
......................................................................................................TCGTTGTTGTTGTAGTCT................................................................................................................................... 18 0 5 0.20 1 1 0 0
........................................................................................................................................CGTTGTTGTCGTTGTTGTT................................................................................................ 19 0 20 0.05 1 0 0 1
............................................................................................................................................GTTGTCGTCGTTGTTTACGTC.......................................................................................... 21 1 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004909:5719871-5720121 + dwi_2734 TATTGGATGGAATACCAGCGCTAAAGA-----------AACGCAA-ATCTTTAACA------------------GTCTAT---------------------------------------------------------------------------------------------GTGAGTCCCAA---ACAACA---------GCATC---AGCAGCAGCAGCAGCAGACCTACCATCA------------------------ACAGCAACAACAACAT---------------CAGAAGCACCA---------------------GC--------------------------------------TACAGCAGCAAC--------------------------------------------------------------------AACAGCAACAACAAATGCAGGCAACCCCAT---------------------------------------------------------------------------------------TGACA-----GG----C------------------------GGTTGGGCAGCGTGTGGTGGCGGTAATAGTAACGCTGGCAGTAGTAGTG--GTGT-------------------------------------------------TGGT---G----G-----------TGGC--GAAACACTA
droVir3 scaffold_12472:186687-186916 - TATTGGATGGCATACCCTCGCTGAAGA-----------AACGCAA-ATCGTTAACA------------------GTCTAT---------------------------------------------------------------------------------------------GTGAGTCCAAA---GCAAC------------------AGCTACAACAACAACAA---CAACAACA------------------------ACAGCATCAGCAGCAA---------------CAACAACAACA---------------------AC--------------------------------------AGCAGCAGCAGC--------------------------------------------------------------------AGCAGCAACAACAACAGAATGTTGCAAGAACAAC---------------------------------------------------------------------------------------GAGCGCGGCGGC----------------------------------------G---GAGTCACAGCAAACACTGCAGACCCTTTTA--TTGC-------------------------------------------------AGGTGCCC----------------------TCAACAACA
droMoj3 scaffold_6359:3383787-3383995 - dmo_578 TTTTGGATGGCATACCGTCGCTGAAGA-----------AACGCAA-ATCGTTAACA------------------GTTTAT---------------------------------------------------------------------------------------------GTGAGTCCAAA---GCAAC------------------AGCTACAACAGCAACAA---CAACAGCT------------------------ACAACAGCAGCAGCAG---------------CAGCAGCAACA---------------------GC--------------------------------------AACAACAACAAC--------AACAGCAGC---------------------------------------------------AGCAGGTGCAGC------ATACAGCAAGAGCAA---------------------------------------------------------------------------------------CGAGCGCGGCGGC----------------------------------------G---GAATCACAGCAAACGCT-----------------GC-------------------------------------------------AG-------------------------------ACCCTT
droGri2 scaffold_25:4071-4321 - AAACGGCAG-CA--CCAACAGCA----GCAGCAGCAGCAGCG--------TCAACA--TCAG----C------A----GCA-----GCG-------TC--AACATCAGCAGCAGCAGC---------AGCA----------------------------G-----CAGCAGCAGCA-----GCAGCAGCAGCAGCAGCAGCAGCAGCA------------------------------------------------------------------G------------------CG------GCAGCAGCAGCAGCA---------GC---GGCAGCAGCAGCAGCAGCAGCAGC--AGCAGCAGCGGCAGCAGC------------------------------------------------------------------------------------------AGCGGCAGCAGC------------------------------------------------------------------------------------------AGCAGCGG----------------------------------------------CAGCAGCAGCAGTAGCAGCGGCAGCAGCAGCAGC----AG--------------------------------------C---------AGC---G----G---------------CAGCAGCAGCA
dp5 2:6797190-6797410 + CAGCAACAGGAA-----------------------------------CAGCAGCAATATATG----C------A----ACA-------------------G-------CAACATATGC---------AACA----------------------------G-----CAAAATATGCA-----GCAGCAACATCTGCAACAGCAACATCTGCAGCAGCAACAGCAGAAG---CAGCAGCA------------------------ACAGAAGCAGCAGCAA---------------CAGCAGCAGCA------ACAG------CAGCAGCAAC-----------------------------------AACAGAAGCAGC--------------------------------------------------------------------AGCAACAGCAGCAGCA-GAAGCAGCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC----AG--------------------------------------G---------TGC---A----G---------------CAGCAACATCA
droPer2 scaffold_2:5826681-5826920 - CAACAAATGTGACGTCGACA-------AGTGCTGATAAAATGCAA-ATG-----------------------------------------------------------CAAATGAAGC---------AACG----------------------------C-----CAGCAGAAGCA-----GCAGCAGCAACAGCAGCAGAAACAGCAGCAGCAGCAACAGCAGCAA---CAACAGCA------------------------ACAGCAGCAACAGCAG---------------CAACAGCAACA------------------GCAGC--------------------------------------AACAGCAACAGC--------------------------------------------------------------------AGCAGCAGCAACAACA-GCAACAGCAACAACAG------------------------------------------------------------------------------------CAA-------------------------------------------------------------------------------CAGCAGCAGC----AG--------------------------------------C---------AGC---A----AGTTTTTGCTGT----CAGCAGCATTA
droAna3 scaffold_13340:4279183-4279433 - CATTGTCGC-CGGCAG-TCATGACCAG-----CT----CGCCAAT-GTCGCTGTCATGCATC------------------C-------------------AACAT-----------ACGGCAGTTGCCACAACAACAATAGCAACAGCAACAGC--------------------------------------------------------AACAGCAATAACAACAA---CAACAGCA------------------------GTAGCAGCAGCAGCCA---------------CAACAGCAATTGCAA-----------TCA------------------------------GCAAATCAGCAACT---------------------------------------------------------------------------------------------------ACAGCAATAACAAT---------------------------------------------------------------------------------AACAGCAACAGCAA----C------------------------AACATCAGCA---ATAGCAGCAACAGCAGTGGCAGTGGCAATCATATGA--GTGC-------------------------------------------------AG----------------------------------GCA
droBip1 scf7180000396759:1274713-1274977 + TGCCAGAAG-CAATACAAACACGAACA-----------CTCAT-----------CA------------------AGTTCTAGTCCAATGAAGAGCATGC-----------------------GCTG-----------------------------------------------------------C-ACGACA---------ACAGTAGCAGTAGCAGGAGCAACAC---CAGCAGCA------------------------GCAACACCATCAGCAA---------------CAGCAGCAAAC---------------------AC--------------------------------------AGTAGCAACATCAGTGCGCC--C---------------------------------------------------------AGCAGCAACATCAACTTCTGGCCAT-----------------------------------------------------------------------------------------------------------------------CAGTCGCAGTCGCTAGTTGGACAGCC-----------------------------------------------------ATTGATGGCTCTGT--TAATTGGATTGCTGCTACTGAATATGCGCCTGGTGT-----------CGGG---TAAGTACT
droKik1 scf7180000302472:745907-746160 - TTTGGGACAG---ATC--TGGGAAACA-----------ATTACAA-TCCATTTACTCAGCAA----------------GCA-------------------CTCGC-----------ACAACAGCA-----------------------------------------------------------------------------ACACCAGCAGCAGCAACAGCAACAC---CAGCAGCA------------------------ACAGCAACATCAGCAG---------------CAGCAGCAACA---------------------TC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAACTGCAATTCCATGCC----------------------------AATCCCTTTGGAAATCCAGGTGGCA-GCCAC----TG-----------------------------GGAGA-----GC----AAGTTCT----CGGCGGCAGCCGT------------------GGCAGC-------AG---CAGCCGCAGTGGCAGC----GG-------------------------------------------------G----A----G-----------CA--------ACGAA
droFic1 scf7180000453773:39929-40165 + GATGCCAGAG--------CGCGAGACT-----------AAAGTGA-ATTTGGCACA------------------GGCCATA-------------------GTCCA-----------AAAACAGCAGC-----------------------------------------------------------------------------------AACAACAACAGCAGCAG---CAGCAGCA------------------------ACAGCAACTCCAGCAA---------------CAGCAGCAGCA------ACAACTCATCCAACAGCAGC-----------------------------------AACTC------G--------AGCAGC------------AGAACTACTATTCGTACATGCAACAGCAACAGGAGAACCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAG------------CAGCAACAACAGCAAC----TGGAACCGCCA--AATGGCTTGGT--T-----------------------------------------------------AAACGCAA
droEle1 scf7180000491044:921463-921704 + ATGGAT-------CCCCGCACAAGCGA-----------GCCTCCA-GTC----ACA------------------GTTTGG------AGGAG------------GA-----------GCACCTGCAGC-----------------------------------------------------------------------------------AACACCGCGAACAGCAG---CATCAGCA------------------------GCAACATCAGCAGCAT---------------CAACAGCAACA---------------------TC--------------------------------------TTCAGCAGCAGCAAC-----ATCAGCAACATCAGCAAC------------------------------------------ACCTCCAACAGCAATT-----TGGCAGCAACAAT------------------------------------------------------------------------------CAAGCGGTCT------------------ACACCAA----------------------------------------TGGCAGTGGCAGC-------------A---------A--GATGGCTTTAT--TGAGC--AGTGC-----------A-GCTGCCA----------------------ATGTGGCA
droRho1 scf7180000779334:988781-989009 - CAGCAGCAG------------------------------------------------------------------------------------------------------------------CAGC---------------AACAGCAGCAGCAGCAGCAACAGCAGCAGCAACA-----GCAGC-ACAACAGCAGCAGCCACAGCA------------G------------------------------------------------------------------------CA------GCAGCAACTGCAACT---------GC---AGCAGCAACAGCAACTGCAACAGC--AACAGCAACTGCAGCAGCAACAGCAACTG--CAGC------------------------------------------------------AGCAACAGCAACACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGCTCTACCGCCAGCAGCAGC-------A---------A--CATCGCACTAGCATGAGT--GGCATAGC--------CAGCC---------------------------AGCAGCA
droBia1 scf7180000302261:770002-770261 - TTGTGGGTGGCAAGCCGATGACAAAAA-----------ACCATAA-GCCGCCGCCATACATC----------------ACA-------------------GCCGT-----------GCAACAGCTGC-----------------------------------------------------------------------------------AGCTGCAGAAGCAGCAACAGCAGCAGCA------------------------GCAACAACAGCAGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAGCGACAACTGGCGGCGGCCGTAACCAT---------------------------------------------------------------------------------GTTGCCCAGTGCGA----C------------------------GACCCTGAAGCGAGTGGAGATCACAAAGGTCACACCGCCGGTCACGGCA--GAGC-------------------------------------------------AGGCTCCCAGCA-------------------TAACCCCA
droTak1 scf7180000415158:218051-218279 - ATTCGATTGGCGGCCAG-GGCCAAA-------------------T-GAAGCCGCTGCGC-------------------------------------------------------------CAGCAG---------------------------------C-----CCGTCAATCTGAATACCCA---GCAGCA---------G---------------------------CAGCAGCA------------------------GCAGAAGTCGCAGCTGCAGCAGCAGCAGCAGCAGCAGAGGAA---------------------GA--------------------------------------ACCAGCGG-----------------------------------------------------------------------------------GAGCCA---GCAGCAGTGAGTA------TGAATCCAACGCAGTT---------------------CACCATTCCGCGGAACGGCGTCTTCATAGCCGTCAACGAGTGGTCG------------------GAGCCGA-------------------------------------------------------------------------------------------------------------------TGGCC-----------------------------AACAG
droEug1 scf7180000409464:879991-880232 - AATTGTTCAAT------------------------------------TG-----------------------CAGC-----------------GTCGGC-----------------------GTTG---------------------------------C-----CTGCCAAAATG-----TCACCCACTCCCACAGCAACCACAGCAGCAGCAGCAGCAGCAACAC---CAACAGCA------------------------GCAACATCAACAACAG---------------CAACATCAGCA------------------GCAGCCAC-----------------------------------ATCAA------T--------GGCAGC------------------------------------------------------AACAACAATGCCGCC-GCAAGCAACCATAA---------------------------------------------------------------------------------------CAATA-----GG----TGCCTGT----CAGCGGCAGGCGG------------------AGTAACCGAA---AA---CGGCCGGAATCGGAGC----CG-------------------------------------------------G----A----G-----------TGGC--GAATCGCTC
dm3 chrX:11789281-11789541 + CGCTG---------------ATGAAGA-----------ATCAGAATGTTGTCAACGCACACGTGTCTGATTGCAAG-----------------TCTAGCGA--TA-----------GCAACAACAA-----------------------------------------------------------------CA---------GCAC---------------CAGCAG---CAGCAACAACAACAGCACCATCAGCAGCAACAACAACAACACTAGCAG---------------CG------CCAGCAACAACAACACTGGCAGCAGC----------------------------------------------------------------------------------------------------------------------AGCAGTTGCAGCAACAGAACAAAGCC--AGCCAA---------------------------------------------------------------------------------ATGGCTCAATGAGA---------------------------------------------ACAGTAGCAGCAGTAGCAGCAGCAACAATAATA--ATAT-------------------------------------------------CAGCTGCAGAAA-------------------TAACAACA
droSim2 2l:12309479-12309685 + TGCTGGCAA-CAACAC-TTGCCAACAA-----------TTC--CC-ATCATCAACA-----------------------CT---------------------------------------------------------------------------------------------TGAG-------C-ACAACA---------------GCAGCAGCAA---CAGCAA---CTGCAGCA------------------------GCAACTGCAGCAGCAG---------------CAGCAGCAACA---------------------GC--------------------------------------AACTGCAGCAGC--------------------------------------------------------------------AACAGCA----------------------ACCATGTTGCTGACTTCACCGACAG----------------------CAGCAACTCATTGCCTG---------------------------------------------------------------------------------GCTGCTG------------CAA---CATCGGCAG----CA-------------------------------------------------GGTGTTAATGT-------------------TCAAATTA
droSec2 scaffold_5:3399085-3399341 - TCGTGGGTGGCAAGCCGATGACAAAAA-----------ACCATAA-GCCGCCGCCATACATC----------------ACA-------------------GCCGT-----------GCAACAGCTGC-----------------------------------------------------------------------------------AGCTGCAGAAGCAACAA---CAGCAGCA------------------------GCAACAACAGCAGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAGCGACAACTGGCGGCGGCCGTAACCAT---------------------------------------------------------------------------------GTTGCCAAGTGCGA----C------------------------GACCCTGAAGCGTGTGGAGATAACAAAGGTCACACCGCAGGTCACGGCA--GAGC-------------------------------------------------AGGCCCCTAGCA-------------------TAAACCCA
droYak3 2L:13876801-13877057 + TCGTGGGTGGCAAGCCGATGACAAAAA-----------ACCATAA-GCCGCCGCCATACATC----------------ACA-------------------GCCGT-----------GCAACAGCTGC-----------------------------------------------------------------------------------AGTTGCAGAAGCAACAA---CAGCAGCA------------------------GCAACAACAGCAGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAGCGACAACTGGCGGCGGCCGTAACCAT---------------------------------------------------------------------------------GTTGCCCAGTGCGA----C------------------------GACCCTGAAGCGTGTGGAGATAACAAAGGTCACACCGCAGGTCACGGCA--GAGC-------------------------------------------------AGGCTCCTAGCA-------------------TAAACCCA
droEre2 scaffold_4929:5402068-5402324 - TTGTGGGTGGCAAGCCGATGACAAAAA-----------ACCATAA-GCCGCCGCCATACATC----------------ACA-------------------GCCGT-----------GCAACAGCTGC-----------------------------------------------------------------------------------AGCTGCAGAAGCAACAA---CAGCAGCA------------------------GCAACAACAGCAGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAGCGACAACTGGCGGCGGCCGTAACCAT---------------------------------------------------------------------------------GTTGCCCAGTGCGA----C------------------------GACCCTGAAGCGTGTGGAGATAACAAAGGTCACACCGCAGGTCACGGCA--GAGC-------------------------------------------------AGGCTCCTAGCA-------------------TAAACCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TATTGGATGGAATACCAGCGCTAAAGA-----------AACGCAA-ATCTTTAACA------------------GTCTAT---------------------------------------------------------------------------------------------GTGAGTCCCAA---ACAACA---------GCATC---AGCAGCAGCAGCAGCAGACCTACCATCA------------------------ACAGCAACAACAACAT---------------CAGAAGCACCA---------------------GC--------------------------------------TACAGCAGCAAC--------------------------------------------------------------------AACAGCAACAACAAATGCAGGCAACCCCAT---------------------------------------------------------------------------------------TGACA-----GG----C------------------------GGTTGGGCAGCGTGTGGTGGCGGTAATAGTAACGCTGGCAGTAGTAGTG--GTGT-------------------------------------------------TGGT---G----G-----------TGGC--GAAACACTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGTAACGCTGGCAGTAGTAGT...............................................................................................2411.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGCAGCGTGTGGTGGC..........................................................................................................................1911.00101000
TATTGGATGGAATACCAGCGCTAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGTAACGCTGGCAGTA....................................................................................................2011.00100100
.......................................................................................................................................................................................A---ACAACA---------GCATC---AGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100100
.......................................................................................................................................................................................A---ACAACA---------GCATC---AGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.40200020
.............................................................................................................................................................................................AACA---------GCATC---AGCAGCAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.17100010
...........................................................................................................................................................................................ACAACA---------GCATC---AGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.17100010
.............................................................................................................................................................................................AACA---------GCATC---AGCAGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.10100100
.......................................................................................................................................................................................A---ACAACA---------GCATC---AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18160.06100010
.................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC--------------------------------------------------------------------AACAGCAACAA..................................................................................................................................................................................................................................................................................................19200.05101000
...........................................................................................................................................................................................................CATC---AGCAGCAGCAGCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..............................................................................................................................................................................................ACA---------GCATC---AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
............................................................................................................................................................................................................ATC---AGCAGCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
droVir3
TATTGGATGGCATACCCTCGCTGAAGA-----------AACGCAA-ATCGTTAACA------------------GTCTAT---------------------------------------------------------------------------------------------GTGAGTCCAAA---GCAAC------------------AGCTACAACAACAACAA---CAACAACA------------------------ACAGCATCAGCAGCAA---------------CAACAACAACA---------------------AC--------------------------------------AGCAGCAGCAGC--------------------------------------------------------------------AGCAGCAACAACAACAGAATGTTGCAAGAACAAC---------------------------------------------------------------------------------------GAGCGCGGCGGC----------------------------------------G---GAGTCACAGCAAACACTGCAGACCCTTTTA--TTGC-------------------------------------------------AGGTGCCC----------------------TCAACAACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................GAAGA-----------AACGCAA-ATCGTTAACA------------------GTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002001000000000010000000000000000000000000000000000000000000000000
.............ACCCTCGCTGAAGA-----------AACGCAA-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000001000000000000000000000100000000000000000000000000
........................................CGCAA-ATCGTTAACA------------------GTCTAT---------------------------------------------------------------------------------------------GTGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000100000000000000000000000000000
..................CGCTGAAGA-----------AACGCAA-ATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........ATACCCTCGCTGAAGA-----------AACGCAA-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000010000000000000000000000000
..............CCCTCGCTGAAGA-----------AACGCAA-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................CAA---CAACAACA------------------------ACAGCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.222000000000000000000000000000011000000000000000000000000000000000
...........................................................................................................................................................................................................................................ACA------------------------ACAGCATCAGCAGCAA---------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................ACAGCATCAGCAGCAA---------------CA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................18160.132000000000020000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GC--------------------------------------------------------------------AGCAGCAACAACAACAGA...........................................................................................................................................................................................................................................................................................20140.071001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AACAACA------------------------ACAGCATCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.051000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGC--------------------------------------------------------------------AGCAGCAACAAC.................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................CAACAACA---------------------AC--------------------------------------AGCAGCAGCAGC--------------------------------------------------------------------AGC..........................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................ACAACAA---CAACAACA------------------------ACAGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AA---------------CAACAACAACA---------------------AC--------------------------------------AGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC--------------------------------------------------------------------AGCAGCAACAA..................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CAA---------------CAACAACAACA---------------------AC--------------------------------------AGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CATCAGCAGCAA---------------CAACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AACA---------------------AC--------------------------------------AGCAGCAGCAGC--------------------------------------------------------------------AGCA.........................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ACAACAACA---------------------AC--------------------------------------AGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CAGCAA---------------CAACAACAACA---------------------AC--------------------------------------AGCA.........................................................................................................................................................................................................................................................................................................................................................................................23200.051000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CAACAACA------------------------ACAGCATCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CAA---------------CAACAACAACA---------------------AC--------------------------------------AGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
droMoj3
TTTTGGATGGCATACCGTCGCTGAAGA-----------AACGCAA-ATCGTTAACA------------------GTTTAT---------------------------------------------------------------------------------------------GTGAGTCCAAA---GCAAC------------------AGCTACAACAGCAACAA---CAACAGCT------------------------ACAACAGCAGCAGCAG---------------CAGCAGCAACA---------------------GC--------------------------------------AACAACAACAAC--------AACAGCAGC---------------------------------------------------AGCAGGTGCAGC------ATACAGCAAGAGCAA---------------------------------------------------------------------------------------CGAGCGCGGCGGC----------------------------------------G---GAATCACAGCAAACGCT-----------------GC-------------------------------------------------AG-------------------------------ACCCTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....GGATGGCATACCGTCGCTGAAGA-----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
......................................................................................................................................................................................................................................................................................................................................C--------------------------------------AACAACAACAAC--------AACAGC...................................................................................................................................................................................................................................................................................................................................................................19200.102200000
...........................................................................................................................................................................................................................................................................................................CAACA---------------------GC--------------------------------------AACAACAACAAC--------AA.......................................................................................................................................................................................................................................................................................................................................................................21200.051100000
......................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAG---------------CAGCAGCAACA---------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................ACAACAACAAC--------AACAGCAGC---------------------------------------------------AGC..........................................................................................................................................................................................................................................................................................................23200.051100000
............................................................................................................................................................................................................................................CT------------------------ACAACAGCAGCAGCAG---------------CA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................AACAACAACAAC--------AACAGCA..................................................................................................................................................................................................................................................................................................................................................................19200.051100000
droGri2
AAACGGCAG-CA--CCAACAGCA----GCAGCAGCAGCAGCG--------TCAACA--TCAG----C------A----GCA-----GCG-------TC--AACATCAGCAGCAGCAGC---------AGCA----------------------------G-----CAGCAGCAGCA-----GCAGCAGCAGCAGCAGCAGCAGCAGCA------------------------------------------------------------------G------------------CG------GCAGCAGCAGCAGCA---------GC---GGCAGCAGCAGCAGCAGCAGCAGC--AGCAGCAGCGGCAGCAGC------------------------------------------------------------------------------------------AGCGGCAGCAGC------------------------------------------------------------------------------------------AGCAGCGG----------------------------------------------CAGCAGCAGCAGTAGCAGCGGCAGCAGCAGCAGC----AG--------------------------------------C---------AGC---G----G---------------CAGCAGCAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................CAGCAGCAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.25550
......................................................................................................................................................................................CAGCAGCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.25550
dp5
CAGCAACAGGAA-----------------------------------CAGCAGCAATATATG----C------A----ACA-------------------G-------CAACATATGC---------AACA----------------------------G-----CAAAATATGCA-----GCAGCAACATCTGCAACAGCAACATCTGCAGCAGCAACAGCAGAAG---CAGCAGCA------------------------ACAGAAGCAGCAGCAA---------------CAGCAGCAGCA------ACAG------CAGCAGCAAC-----------------------------------AACAGAAGCAGC--------------------------------------------------------------------AGCAACAGCAGCAGCA-GAAGCAGCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC----AG--------------------------------------G---------TGC---A----G---------------CAGCAACATCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA-GAAGCAGCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG...................................................................................................2311.0010010000000
.AGCAACAGGAA-----------------------------------CAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010100000000
......................................................................................................................................................................................................................................................................................................................................CAAC-----------------------------------AACAGAAGCAGC--------------------------------------------------------------------AGC..........................................................................................................................................................................................................................................................................................................1970.1410010000000
................................................................................................................................................................................................................GCAGCAGCAACAGCAGAAG---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.0610100000000
........................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------AGCAACAGCAGCAGCA-G...........................................................................................................................................................................................................................................................................................18200.0510100000000
..............................................................................................................................................................................................................................................................................AGCAGCAA---------------CAGCAGCAGCA------ACAG------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510010000000
.................................................................................................................................................................................................................................................................................AGCAA---------------CAGCAGCAGCA------ACAG------CAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000001
...............................................................................................................................................................................................................................................................................GCAGCAA---------------CAGCAGCAGCA------ACAG------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010000000
................................................................................................................................................................................................................................................................................CAGCAA---------------CAGCAGCAGCA------ACAG------CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510001000000
.................................................................................................................................................................................................................................................................................AGCAA---------------CAGCAGCAGCA------ACAG------CAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000001
.....................................................................................................................................................................................................................................................................................A---------------CAGCAGCAGCA------ACAG------CAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
...............................................................................................................................................................................................................................................................................GCAGCAA---------------CAGCAGCAGCA------ACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
....................................................................................................................................................................................................................................................................................AA---------------CAGCAGCAGCA------ACAG------CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................GCAGC--------------------------------------------------------------------AGCAACAGCAGCAGCA-............................................................................................................................................................................................................................................................................................21200.0510000010000
..................................................................................................................................................................................................................................................................................GCAA---------------CAGCAGCAGCA------ACAG------CAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000001
...............................................................................................................................................................................................................................................................................GCAGCAA---------------CAGCAGCAGCA------ACAG------CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
..........................................................................................................................................................................................................................................................................................................GCAGCA------ACAG------CAGCAGCAAC-----------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
............................................................................................................................................................................................................................................................................GCAGCAGCAA---------------CAGCAGCAGCA------....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000010000
droPer2
CAACAAATGTGACGTCGACA-------AGTGCTGATAAAATGCAA-ATG-----------------------------------------------------------CAAATGAAGC---------AACG----------------------------C-----CAGCAGAAGCA-----GCAGCAGCAACAGCAGCAGAAACAGCAGCAGCAGCAACAGCAGCAA---CAACAGCA------------------------ACAGCAGCAACAGCAG---------------CAACAGCAACA------------------GCAGC--------------------------------------AACAGCAACAGC--------------------------------------------------------------------AGCAGCAGCAACAACA-GCAACAGCAACAACAG------------------------------------------------------------------------------------CAA-------------------------------------------------------------------------------CAGCAGCAGC----AG--------------------------------------C---------AGC---A----AGTTTTTGCTGT----CAGCAGCATTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG------------------------------------------------------------------------------------CAA-------------------------------------------------------------------------------CAGCAGCAGC----AG--------------------------------------C---------A.....................................25150.071001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAG------------------------------------------------------------------------------------CAA-------------------------------------------------------------------------------CAGCAGCAGC----AG--------------------------------------C---------A.....................................24190.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG------------------------------------------------------------------------------------CAA-------------------------------------------------------------------------------CAGCAGCAGC----AG--------------------------------------................................................21200.051001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG------------------------------------------------------------------------------------CAA-------------------------------------------------------------------------------CAGCAGCAGC----........................................................................................21200.051001000
.................................................................................................................................................................................................................................................................................................................................................................................GCAACAGC--------------------------------------------------------------------AGCAGCAGCAACA................................................................................................................................................................................................................................................................................................21200.051001000
droAna3
CATTGTCGC-CGGCAG-TCATGACCAG-----CT----CGCCAAT-GTCGCTGTCATGCATC------------------C-------------------AACAT-----------ACGGCAGTTGCCACAACAACAATAGCAACAGCAACAGC--------------------------------------------------------AACAGCAATAACAACAA---CAACAGCA------------------------GTAGCAGCAGCAGCCA---------------CAACAGCAATTGCAA-----------TCA------------------------------GCAAATCAGCAACT---------------------------------------------------------------------------------------------------ACAGCAATAACAAT---------------------------------------------------------------------------------AACAGCAACAGCAA----C------------------------AACATCAGCA---ATAGCAGCAACAGCAGTGGCAGTGGCAATCATATGA--GTGC-------------------------------------------------AG----------------------------------GCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCAATCATATGA--GTGC-------------------------------------------------.......................................2012.002000002
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGTGGCAGTGGCAATCAT..................................................................................................2511.001010000
..........................G-----CT----CGCCAAT-GTCGCTGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...TGTCGC-CGGCAG-TCATGACCAG-----C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....GTCGC-CGGCAG-TCATGACCAG-----CT----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................................................CAACAGCAATTGCAA-----------TCA------------------------------GCAAAC....................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
....GTCGC-CGGCAG-TCATGACCAG-----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......................................................................................................................................................................................................................................CAACAGCA------------------------GTAGCAGCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.171100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAA----C------------------------AACATCAGC......................................................................................................................................1970.141001000
..........................................................................................................................................................................................................................................AGCA------------------------GTAGCAGCAGCAGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.131100000
........................................................................................................................................AATAGCAACAGCAACAGC--------------------------------------------------------AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.091010000
droBip1
TGCCAGAAG-CAATACAAACACGAACA-----------CTCAT-----------CA------------------AGTTCTAGTCCAATGAAGAGCATGC-----------------------GCTG-----------------------------------------------------------C-ACGACA---------ACAGTAGCAGTAGCAGGAGCAACAC---CAGCAGCA------------------------GCAACACCATCAGCAA---------------CAGCAGCAAAC---------------------AC--------------------------------------AGTAGCAACATCAGTGCGCC--C---------------------------------------------------------AGCAGCAACATCAACTTCTGGCCAT-----------------------------------------------------------------------------------------------------------------------CAGTCGCAGTCGCTAGTTGGACAGCC-----------------------------------------------------ATTGATGGCTCTGT--TAATTGGATTGCTGCTACTGAATATGCGCCTGGTGT-----------CGGG---TAAGTACTSizeHit CountTotal NormTotal
No Reads
droKik1
TTTGGGACAG---ATC--TGGGAAACA-----------ATTACAA-TCCATTTACTCAGCAA----------------GCA-------------------CTCGC-----------ACAACAGCA-----------------------------------------------------------------------------ACACCAGCAGCAGCAACAGCAACAC---CAGCAGCA------------------------ACAGCAACATCAGCAG---------------CAGCAGCAACA---------------------TC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAACTGCAATTCCATGCC----------------------------AATCCCTTTGGAAATCCAGGTGGCA-GCCAC----TG-----------------------------GGAGA-----GC----AAGTTCT----CGGCGGCAGCCGT------------------GGCAGC-------AG---CAGCCGCAGTGGCAGC----GG-------------------------------------------------G----A----G-----------CA--------ACGAASizeHit CountTotal NormTotal
No Reads
droFic1
GATGCCAGAG--------CGCGAGACT-----------AAAGTGA-ATTTGGCACA------------------GGCCATA-------------------GTCCA-----------AAAACAGCAGC-----------------------------------------------------------------------------------AACAACAACAGCAGCAG---CAGCAGCA------------------------ACAGCAACTCCAGCAA---------------CAGCAGCAGCA------ACAACTCATCCAACAGCAGC-----------------------------------AACTC------G--------AGCAGC------------AGAACTACTATTCGTACATGCAACAGCAACAGGAGAACCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAG------------CAGCAACAACAGCAAC----TGGAACCGCCA--AATGGCTTGGT--T-----------------------------------------------------AAACGCAASizeHit CountTotal NormTotal
No Reads
droEle1
ATGGAT-------CCCCGCACAAGCGA-----------GCCTCCA-GTC----ACA------------------GTTTGG------AGGAG------------GA-----------GCACCTGCAGC-----------------------------------------------------------------------------------AACACCGCGAACAGCAG---CATCAGCA------------------------GCAACATCAGCAGCAT---------------CAACAGCAACA---------------------TC--------------------------------------TTCAGCAGCAGCAAC-----ATCAGCAACATCAGCAAC------------------------------------------ACCTCCAACAGCAATT-----TGGCAGCAACAAT------------------------------------------------------------------------------CAAGCGGTCT------------------ACACCAA----------------------------------------TGGCAGTGGCAGC-------------A---------A--GATGGCTTTAT--TGAGC--AGTGC-----------A-GCTGCCA----------------------ATGTGGCASizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAGCAG------------------------------------------------------------------------------------------------------------------CAGC---------------AACAGCAGCAGCAGCAGCAACAGCAGCAGCAACA-----GCAGC-ACAACAGCAGCAGCCACAGCA------------G------------------------------------------------------------------------CA------GCAGCAACTGCAACT---------GC---AGCAGCAACAGCAACTGCAACAGC--AACAGCAACTGCAGCAGCAACAGCAACTG--CAGC------------------------------------------------------AGCAACAGCAACACCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGCTCTACCGCCAGCAGCAGC-------A---------A--CATCGCACTAGCATGAGT--GGCATAGC--------CAGCC---------------------------AGCAGCASizeHit CountTotal NormTotal
No Reads
droBia1
TTGTGGGTGGCAAGCCGATGACAAAAA-----------ACCATAA-GCCGCCGCCATACATC----------------ACA-------------------GCCGT-----------GCAACAGCTGC-----------------------------------------------------------------------------------AGCTGCAGAAGCAGCAACAGCAGCAGCA------------------------GCAACAACAGCAGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAGCGACAACTGGCGGCGGCCGTAACCAT---------------------------------------------------------------------------------GTTGCCCAGTGCGA----C------------------------GACCCTGAAGCGAGTGGAGATCACAAAGGTCACACCGCCGGTCACGGCA--GAGC-------------------------------------------------AGGCTCCCAGCA-------------------TAACCCCASizeHit CountTotal NormTotal
No Reads
droTak1
ATTCGATTGGCGGCCAG-GGCCAAA-------------------T-GAAGCCGCTGCGC-------------------------------------------------------------CAGCAG---------------------------------C-----CCGTCAATCTGAATACCCA---GCAGCA---------G---------------------------CAGCAGCA------------------------GCAGAAGTCGCAGCTGCAGCAGCAGCAGCAGCAGCAGAGGAA---------------------GA--------------------------------------ACCAGCGG-----------------------------------------------------------------------------------GAGCCA---GCAGCAGTGAGTA------TGAATCCAACGCAGTT---------------------CACCATTCCGCGGAACGGCGTCTTCATAGCCGTCAACGAGTGGTCG------------------GAGCCGA-------------------------------------------------------------------------------------------------------------------TGGCC-----------------------------AACAGSizeHit CountTotal NormTotal
No Reads
droEug1
AATTGTTCAAT------------------------------------TG-----------------------CAGC-----------------GTCGGC-----------------------GTTG---------------------------------C-----CTGCCAAAATG-----TCACCCACTCCCACAGCAACCACAGCAGCAGCAGCAGCAGCAACAC---CAACAGCA------------------------GCAACATCAACAACAG---------------CAACATCAGCA------------------GCAGCCAC-----------------------------------ATCAA------T--------GGCAGC------------------------------------------------------AACAACAATGCCGCC-GCAAGCAACCATAA---------------------------------------------------------------------------------------CAATA-----GG----TGCCTGT----CAGCGGCAGGCGG------------------AGTAACCGAA---AA---CGGCCGGAATCGGAGC----CG-------------------------------------------------G----A----G-----------TGGC--GAATCGCTCSizeHit CountTotal NormTotal
No Reads
dm3
CGCTG---------------ATGAAGA-----------ATCAGAATGTTGTCAACGCACACGTGTCTGATTGCAAG-----------------TCTAGCGA--TA-----------GCAACAACAA-----------------------------------------------------------------CA---------GCAC---------------CAGCAG---CAGCAACAACAACAGCACCATCAGCAGCAACAACAACAACACTAGCAG---------------CG------CCAGCAACAACAACACTGGCAGCAGC----------------------------------------------------------------------------------------------------------------------AGCAGTTGCAGCAACAGAACAAAGCC--AGCCAA---------------------------------------------------------------------------------ATGGCTCAATGAGA---------------------------------------------ACAGTAGCAGCAGTAGCAGCAGCAACAATAATA--ATAT-------------------------------------------------CAGCTGCAGAAA-------------------TAACAACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................AACAACAACACTGGCAGCAGC----------------------------------------------------------------------------------------------------------------------AGCAGT.......................................................................................................................................................................................................................................................................................................27119.00190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200002000000000004000000000005100000000000000000000000000000000000000000000000000000000000000000000101000000300000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCAATGAGA---------------------------------------------ACAGTAGCAGCAGT.................................................................................................................27116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000700000000000000020005010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCAATGAGA---------------------------------------------ACAGTAGCAGCAG..................................................................................................................26113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010207100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CAACAACACTGGCAGCAGC----------------------------------------------------------------------------------------------------------------------AGCAGT.......................................................................................................................................................................................................................................................................................................25112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000002000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000420000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................AACAACACTGGCAGCAGC----------------------------------------------------------------------------------------------------------------------AGCAGT.......................................................................................................................................................................................................................................................................................................24110.00100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000003000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000110000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCC--AGCCAA---------------------------------------------------------------------------------ATGGCTCAATGAA.............................................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................AGCAACAACAACAACACTAGCAG---------------CG------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000220000000000000000100000000
....................................................................................................................................................................................................................................................................CAACAACAACACTAGCAG---------------CG------CCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGA---------------------------------------------ACAGTAGCAGCAGTAGCAGCA..........................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000010003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TAGCAG---------------CG------CCAGCAACAACAACACT............................................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AACAACAACAACACTAGCAG---------------CG------CCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000020000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAACAGAACAAAGCC--AGCCAA---------------------------------------------------------------------------------A.........................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................CAGCAACAACAACAGCACCATCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000002000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................CAACAACAACACTAGCAG---------------CG------CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAATAATA--ATAT-------------------------------------------------CAGCTGCAGA.............................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCAATGAGA---------------------------------------------ACAGTAGCAGC....................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................AACAACACTAGCAG---------------CG------CCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCAATGAGA---------------------------------------------ACAGTAGCAGCAGTA................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAATAATA--ATAT-------------------------------------------------C......................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CAG---------------CG------CCAGCAACAACAACACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
TGCTGGCAA-CAACAC-TTGCCAACAA-----------TTC--CC-ATCATCAACA-----------------------CT---------------------------------------------------------------------------------------------TGAG-------C-ACAACA---------------GCAGCAGCAA---CAGCAA---CTGCAGCA------------------------GCAACTGCAGCAGCAG---------------CAGCAGCAACA---------------------GC--------------------------------------AACTGCAGCAGC--------------------------------------------------------------------AACAGCA----------------------ACCATGTTGCTGACTTCACCGACAG----------------------CAGCAACTCATTGCCTG---------------------------------------------------------------------------------GCTGCTG------------CAA---CATCGGCAG----CA-------------------------------------------------GGTGTTAATGT-------------------TCAAATTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGC--------------------------------------------------------------------AACAGCA----------------------AC..............................................................................................................................................................................................................................................................................18204.80960000247200000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------ACCATGTTGCTGACTTCAC.............................................................................................................................................................................................................................................................2011.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGC--------------------------------------------------------------------AACAGCA----------------------ACC.............................................................................................................................................................................................................................................................................1921.00200000200000000000
................................................................................................................................................................................................................................CAA---CTGCAGCA------------------------GCAACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17120.08100000001000000000
..........................................................................................................................................................................................................................................................................................................GCAACA---------------------GC--------------------------------------AACTGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................18200.05100010000000000000
.............................................................................................................................................................................................AACA---------------GCAGCAGCAA---CAGCAA---C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000100000
......................................................................................................................................................................................................................GCAA---CAGCAA---CTGCAGCA------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010000000000000
..................................................................................................................................................................................................................................................................................GCAG---------------CAGCAGCAACA---------------------GC--------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
droSec2
TCGTGGGTGGCAAGCCGATGACAAAAA-----------ACCATAA-GCCGCCGCCATACATC----------------ACA-------------------GCCGT-----------GCAACAGCTGC-----------------------------------------------------------------------------------AGCTGCAGAAGCAACAA---CAGCAGCA------------------------GCAACAACAGCAGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAGCGACAACTGGCGGCGGCCGTAACCAT---------------------------------------------------------------------------------GTTGCCAAGTGCGA----C------------------------GACCCTGAAGCGTGTGGAGATAACAAAGGTCACACCGCAGGTCACGGCA--GAGC-------------------------------------------------AGGCCCCTAGCA-------------------TAAACCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCGTGTGGAGATAACA......................................................................................................................2011.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA----C------------------------GACCCTGAAGCGTGTGGAG............................................................................................................................2311.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCAGGTCACGGCA--GAGC-------------------------------------------------A......................................2111.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCAGGTCACGGCA--GAGC-------------------------------------------------AGGC...................................2511.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTGAAGCGTGTGGA.............................................................................................................................1811.0010010
..................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC--------------------------------------------------------------------AACAGCAGCGACA................................................................................................................................................................................................................................................................................................2020.5011000
............................................................................................................................................................................................................................................................................ACAGCAGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................24200.1530030
................................................................................................................................................................................................................................................................................CAGCAA---------------CAGCAGCAGCA---------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020020
.........................................................................................................................................................................................................................................CAGCA------------------------GCAACAACAGCAGCAA---------------CAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020020
.......................................................................................................................................................................................................................................................................CAACAACAGCAGCAA---------------CAGCAGCAGCA---------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020020
...........................................................................................................................................................................................................................AGCAACAA---CAGCAGCA------------------------GCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020020
..................................................................................................................................................................................................................................................................................GCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................18200.1020020
....................................................................................................................................................................................................................................................................................AA---------------CAGCAGCAGCA---------------------AC--------------------------------------AAC..........................................................................................................................................................................................................................................................................................................................................................................................18200.0510010
.........................................................................................................................................................................................................................................CAGCA------------------------GCAACAACAGCAGCAA---------------CAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510010
.............................................................................................................................................................................................................................................A------------------------GCAACAACAGCAGCAA---------------CAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510010
.........................................................................................................................................................................................................................................................................ACAACAGCAGCAA---------------CAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
..............................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC--------------------------------------------------------------------AACAGCA......................................................................................................................................................................................................................................................................................................18200.0510010
........................................................................................................................................................................................................................................................................AACAACAGCAGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................28200.0510010
.................................................................................................................................................................................................................................................................................AGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AAC..........................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
.........................................................................................................................................................................................................................................................................ACAACAGCAGCAA---------------CAGCAGCAGCA---------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510010
................................................................................................................................................................................................................................................................................CAGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AAC..........................................................................................................................................................................................................................................................................................................................................................................................22200.0510010
...........................................................................................................................................................................................................................................GCA------------------------GCAACAACAGCAGCAA---------------CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510010
..........................................................................................................................................................................................................................................................................CAACAGCAGCAA---------------CAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010
droYak3
TCGTGGGTGGCAAGCCGATGACAAAAA-----------ACCATAA-GCCGCCGCCATACATC----------------ACA-------------------GCCGT-----------GCAACAGCTGC-----------------------------------------------------------------------------------AGTTGCAGAAGCAACAA---CAGCAGCA------------------------GCAACAACAGCAGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAGCGACAACTGGCGGCGGCCGTAACCAT---------------------------------------------------------------------------------GTTGCCCAGTGCGA----C------------------------GACCCTGAAGCGTGTGGAGATAACAAAGGTCACACCGCAGGTCACGGCA--GAGC-------------------------------------------------AGGCTCCTAGCA-------------------TAAACCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----C------------------------GACCCTGAAGCGTGTG...............................................................................................................................1911.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGTGCGA----C------------------------GACCCTGAAGCGTG.................................................................................................................................2511.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACACCGCAGGTCACGGCA--GA..........................................................................................2311.00101000000000
.....................CAAAAA-----------ACCATAA-GCCGCCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................GC--------------------------------------------------------------------AACAGCAGCGACAACTGGCGGC.......................................................................................................................................................................................................................................................................................2411.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC--------------------------------------------------------------------AACAGCAGCGACAACTGGCG.........................................................................................................................................................................................................................................................................................2811.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGA----C------------------------GACCCTGAAGCGTGT................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------AACAGCAGCGACAACTGGCGGCGG.....................................................................................................................................................................................................................................................................................2511.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACACCGCAGGTCACGGCA--............................................................................................2211.00101000000000
..........................................................................................................................................................................................................................................................................................................GCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................20200.15303000000000
........................................................................................................................................................................................................................AGAAGCAACAA---CAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.13101000000000
......................................................................................................................................................................................................................................................................GCAACAACAGCAGCAA---------------CAGCAGCAGCA---------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................27180.06101000000000
..........................................................................................................................................................................................................................................................................................................GCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAGC....................................................................................................................................................................................................................................................................................................29180.06100100000000
..........................................................................................................................................................................................................................................................................................................GCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AAC..........................................................................................................................................................................................................................................................................................................23200.05101000000000
............................................................................................................................................................................................................................................................................................................AGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGC.......................................................................................................................................................................................................................................................................................................24200.05100100000000
.................................................................................................................................................................................................................................................................................AGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAGC.......................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000001
..........................................................................................................................................................................................................................................................................................................GCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACA.........................................................................................................................................................................................................................................................................................................24200.05101000000000
...........................................................................................................................................................................................................................................GCA------------------------GCAACAACAGCAGCAA---------------CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
..........................................................................................................................................................................................................................................................................................................GCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAG........................................................................................................................................................................................................................................................................................................25200.05101000000000
...........................................................................................................................................................................................................................................................................................................CAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGC.......................................................................................................................................................................................................................................................................................................25200.05100100000000
........................................................................................................................................................................................................................................................................AACAACAGCAGCAA---------------CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
.............................................................................................................................................................................................................................................................................................................GCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AA...........................................................................................................................................................................................................................................................................................................19200.05101000000000
....................................................................................................................................................................................................................................................................................AA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAG........................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000
.......................................................................................................................................................................................................................................................................CAACAACAGCAGCAA---------------CAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000000000
.........................................................................................................................................................................................................................................................................................................AGCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGC.......................................................................................................................................................................................................................................................................................................27200.05100100000000
........................................................................................................................................................................................................................................................................AACAACAGCAGCAA---------------CAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
..............................................................................................................................................................................................................................................................................................................CA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAG.....................................................................................................................................................................................................................................................................................................24200.05101000000000
..........................................................................................................................................................................................................................................................................................................GCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGC.......................................................................................................................................................................................................................................................................................................26200.05101000000000
droEre2
TTGTGGGTGGCAAGCCGATGACAAAAA-----------ACCATAA-GCCGCCGCCATACATC----------------ACA-------------------GCCGT-----------GCAACAGCTGC-----------------------------------------------------------------------------------AGCTGCAGAAGCAACAA---CAGCAGCA------------------------GCAACAACAGCAGCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAGCGACAACTGGCGGCGGCCGTAACCAT---------------------------------------------------------------------------------GTTGCCCAGTGCGA----C------------------------GACCCTGAAGCGTGTGGAGATAACAAAGGTCACACCGCAGGTCACGGCA--GAGC-------------------------------------------------AGGCTCCTAGCA-------------------TAAACCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................TACATC----------------ACA-------------------GCCGT-----------GCAACAGCTGC-----------------------------------------------------------------------------------AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGCA--GAGC-------------------------------------------------AGGCTCCT...............................1911.0010000010
.........................................ATAA-GCCGCCGCCATACATC----------------ACA-------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGGTCACGGCA--GAGC-------------------------------------------------AGGC...................................2311.0011000000
.......................AAAA-----------ACCATAA-GCCGCCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
..........................................TAA-GCCGCCGCCATACATC----------------ACA-------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
...................................................CGCCATACATC----------------ACA-------------------GCCGT-----------GCAACAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
......................................................................................................................................................................................................................GCAGAAGCAACAA---CAGCAGCA------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5011000000
.................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC--------------------------------------------------------------------AACAGCAGCGACAACT.............................................................................................................................................................................................................................................................................................2420.5010100000
....................................................................................................................................................................................................................................................................................AA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAGCA......................................................................................................................................................................................................................................................................................................................................................................................22200.1020000200
.............................................................................................................................................................................................................................................A------------------------GCAACAACAGCAGCAA---------------CAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.0910000010
...........................................................................................................................................................................................................................................GCA------------------------GCAACAACAGCAGCAA---------------CAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................23160.0610000100
.................................................................................................................................................................................................................................AA---CAGCAGCA------------------------GCAACAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000000
.....................................................................................................................................................................................................................................................................................................................................AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGC.......................................................................................................................................................................................................................................................................................................20200.0511000000
.......................................................................................................................................................................................................................................................................CAACAACAGCAGCAA---------------CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
....................................................................................................................................................................................................................................................................................AA---------------CAGCAGCAGCA---------------------AC--------------------------------------AACAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................24200.0511000000
..................................................................................................................................................................................................................................................................................GCAA---------------CAGCAGCAGCA---------------------AC--------------------------------------AAC..........................................................................................................................................................................................................................................................................................................................................................................................20200.0511000000
........................................................................................................................................................................................................................................................................AACAACAGCAGCAA---------------CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100
.....................................................................................................................................................................................................................................................................................................................................AC--------------------------------------AACAGCAGCAGC--------------------------------------------------------------------AACAGCAG.....................................................................................................................................................................................................................................................................................................22200.0511000000

Generated: 05/18/2015 at 05:13 AM