dwi_272

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCTGCATGCAGAAGTTACTACGTAAACCTAAATAACGTGAAGATAATCGAGAATATGCCAATAATCATGTGATCTCTTGGGCAACGAAAGACCACGTTTACGTAAGCTGCGACGTTCACAGACCCAAGCGGATGGAGAGAACTCTCATTCGGAGCAGGAGAACGATGATTTGCAATTGGCTATGTGGGTTACACCAATCAGTCGGGCAGTCGTCGCTTCAGCATCGAGGACTCACGTTTCCCTCCGGCCCA **********************************************************************((.((((((..............((..((((........))))..))...))))))......))*****************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V117 male body	V118 embryo	M020 head	V119 head
....................................................................................CGAAAGACGACGTATAGG.....................................................................................................................................................	18	3	20	14.40	288	274	9	0	2	3
...................................................................................................................................................................................CTATTTGGGTTAAACCAATTA...................................................	21	3	20	0.55	11	11	0	0	0	0
........................................................................TCTCTTGGGCAACGAAAGACCACGTT.........................................................................................................................................................	26	0	2	0.50	1	0	1	0	0	0
......................................................................GATCTCTTGGGCAACGAAAGACCACGTT.........................................................................................................................................................	28	0	2	0.50	1	0	1	0	0	0
...................................................................................................................................................................................CTATTTGGGTTAAACCAAT.....................................................	19	2	8	0.38	3	2	0	0	0	1
.........................................................................................................................................................GCAGGAGAACGATGATCTGC..............................................................................	20	1	4	0.25	1	0	1	0	0	0
......................................................................................................................CAGACCCAAGCGGATGGA...................................................................................................................	18	0	4	0.25	1	0	0	1	0	0
.....ATGCAGAAGTTACTACGTAAA.................................................................................................................................................................................................................................	21	0	4	0.25	1	0	0	1	0	0
.........................................................................................................................AACCAAGCGGATGGAGAGAACTCT..........................................................................................................	24	1	4	0.25	1	0	1	0	0	0
..................................................................................................................................GATCGAGAGAACTCTCGTT......................................................................................................	19	2	4	0.25	1	1	0	0	0	0
........................................................................................................................GACCCAAGCGGATGGAGAGA...............................................................................................................	20	0	4	0.25	1	0	1	0	0	0
....................................................................................................CGTAAGGCGCGACGTTAACAG..................................................................................................................................	21	3	4	0.25	1	0	1	0	0	0
......................................................................................................................CAGACCCAAGCGGATGGAGA.................................................................................................................	20	0	4	0.25	1	0	1	0	0	0
.......................................................................................................................AGACCCAAGCGGATGGAGA.................................................................................................................	19	0	4	0.25	1	0	1	0	0	0
..............................................................................................................................AGCGGATGGAGAGAACTCT..........................................................................................................	19	0	4	0.25	1	1	0	0	0	0
........................................................................................................................................GAGAACTCTCATTCGGAGC................................................................................................	19	0	4	0.25	1	0	0	1	0	0
.........................................................................................................................ACCCAAGCGGATGGAGAGAACTCTC.........................................................................................................	25	0	4	0.25	1	0	0	0	1	0
..........................................................................................................................CCCAAGCGGATGGAGAGAAC.............................................................................................................	20	0	4	0.25	1	0	1	0	0	0
....................................................................................CGAAAGACGACGTATAGGT....................................................................................................................................................	19	3	9	0.11	1	1	0	0	0	0
......................................................................................................................CACACCCAAGCTGATGGA...................................................................................................................	18	2	10	0.10	1	1	0	0	0	0
..............................................................................................................................AGGTGATCGAGAGAACTCT..........................................................................................................	19	3	20	0.10	2	0	1	0	0	1
....................................................................................................................................................................................TATTTGGGTTAAACCAATTAGT.................................................	22	3	20	0.10	2	0	0	2	0	0
...............................................................................GGCCACGAATGAGCACGTT.........................................................................................................................................................	19	3	10	0.10	1	1	0	0	0	0
....................................................................................CGAAAGACCACGTATAGGG....................................................................................................................................................	19	3	10	0.10	1	1	0	0	0	0
....................................................................................CGAAAGACGACGTTTAGGG....................................................................................................................................................	19	3	11	0.09	1	0	1	0	0	0
...................................................................................ACGAAAGACGACGTATAGG.....................................................................................................................................................	19	3	11	0.09	1	1	0	0	0	0
....................................................................................CGAAAGACGACGTATACGG....................................................................................................................................................	19	3	18	0.06	1	0	1	0	0	0
........................................................................................................................................................................................TGGGTTAAACCAATTAGT.................................................	18	2	20	0.05	1	0	0	1	0	0

GGACGTACGTCTTCAATGATGCATTTGGATTTATTGCACTTCTATTAGCTCTTATACGGTTATTAGTACACTAGAGAACCCGTTGCTTTCTGGTGCAAATGCATTCGACGCTGCAAGTGTCTGGGTTCGCCTACCTCTCTTGAGAGTAAGCCTCGTCCTCTTGCTACTAAACGTTAACCGATACACCCAATGTGGTTAGTCAGCCCGTCAGCAGCGAAGTCGTAGCTCCTGAGTGCAAAGGGAGGCCGGGT *****************************************************************************************************************((.((((((..............((..((((........))))..))...))))))......))**********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V117 male body	M045 female body
.......................................................................................................................................................................................................................................AGTGGAAAGGGAGGCCATG.	19	3	7	0.14	1	1	0
..........................................................................................................................................................................................................................GTCGTAGGTACTGAATGCA..............	19	3	14	0.07	1	0	1
...............................................................................................................................GGCCTACCTCTCTTTAGG..........................................................................................................	18	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000002604:2294-2544 +	dwi_272	CCTGCATGCAGAAGTTACTACGTAAACCTAAATAACGTGAAGATAATCGAGAATATGCCAATAATCATGTGATCTCTTGGGCAACGAAAGACCACGT---TTACGTAAGCTGCGACGTTCACAGACCCAAGCGGATGGAGAGAACTCTCATTCGGAGCA------GGAGAACGATGATTTGCAA----------------------------------------------------------------------------------------TTGGCTATGTGGGTTACACCAATCAGTCGGGCAGTCGTCGCTTCAGCATCGAGGACTCACGTTTCCCTCCGGCCCA
droVir3	scaffold_10324:680488-680564 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGGCTACATGGAGTACAGCACGCAGTCGGGCAGTCGACGCTTCAGCATTGAAGACTCACGTTTTCCGGCCGCGCA
droMoj3	scaffold_6496:2519665-2519741 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGGATATATGGAATACAGTACGCAGTCCGGCAGTCGACGCTTCAGCATCGAGGACTCGCGTTTTCCGGCTGCACA
droGri2	scaffold_15245:8395108-8395184 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGGCTACATGGAGTACAACACGCAGTCTGGCAGTCGACGCTTTAGCATCGAGGACTCACGCTTTCCGGCAGCCCG
dp5	3:14951099-14951361 -		----------------------------------------------------------------------GATCTCTCGGGAA--GCAACAGGCCGCAA-TCACGAAAGCTTCGTCGCTCCCAGACCCAGGCCGACGGCGATGCCTCCCAGTCCGAGGG------CGAGG---ACGGACTGCAGCTGGACACGTGCCAGAGATTCCGCAGCGTGGAGATGCTCTCCAACAGGGACAAGGAACGGACAGCCCAGTACGGTCCGCGCAGGCGCACCGGCTACATGGAGTACAAC---CAATCGGGCAGTCGTCGCTTCAGCATCGAGGACTCGCGCTTCCCGGCGGCGCA
droPer2	scaffold_4:4100319-4100581 +		----------------------------------------------------------------------GATCTCTCGGGAA--GCAACAGGCCGCAA-TCACGAAAGCTTCGTCGCTCCCAGACCCAGGCCGACGGCGATGCCTCCCAGTCCGAGGG------CGAGG---ACGGACTGCAGCTGGACACGTGCCAGAGATTCCGCAGCGTGGAGATGCTCTCCAACAGGGACAAGGAACGGACAGCCCAGTACGGTCCGCGCAGGCGCACCGGCTACATGGAGTACAAC---CAATCGGGCAGTCGTCGCTTCAGCATCGAGGACTCGCGCTTCCCGGCGGCGCA
droAna3	scaffold_13266:2199301-2199371 +		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGTACATGGAGTATAAT---CAGTCGGGCAGCCGGCGTTTGAGCATCGAGGATTCACGGTTCCCGGCAGCCCA
droBip1	scf7180000396384:381382-381647 -		----------------------------------------------------------------------GATCTTTCGGGGCCGGAGAGAGCTCGCAACTCCCGAAAGCTAAGACGTTCCCAAACCCATCCCGATGGCGATGGCTCTCAGTCGGACAT------GGAGG---AAGGGCTCCAGCTGGACTCCCGCCAGAGGTTCCGCAGTGCCGAAATGCTCTCCAACCGAGACAAGGAGCGGCGGGCCCAGTACGGACCCTACCGGCGCACTGGGTACATGGAGTACAAT---CAGTCGGGCAGCCGGCGCTTGAGCATCGAGGATTCCCGCTTCCCGGCAGCCCA
droKik1	scf7180000302471:1308191-1308426 -		-------------------------------------------------------------------------------------------------------CGCAAGCTTCGACGCTCTCAGACCCATGCCGAGGGCGAGGGCTCCCAGTCGGAGGC------GGAGGACTCTAGCCTGCAGCTGGACAGCCGCCAGAGGTTCCGCAGCGTGGAGATGCTGTCCAACCGGGACAAGGAGCGCACAGCGCAGTACGGACCCTACCGCCGCACAGGCCACATGGAATACAGC---CAGTCTGGCAGCCGGCGCTTTAGCATCGAGGACTCGCGCTTCCCGGCCGCCCA
droFic1	scf7180000454066:2085282-2085356 +		A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGGTTACATGGAGTACAAC---CAATCGGGAAGTCGGATTTTCAGCACCGAGGATGCCCGTTTCCCAGCAGCTCA
droEle1	scf7180000491282:94255-94533 -		AATG--------------------------------------------------------------ATG-GATCTCTCGGGACCCCAAAGAGCCCGCAACTCCCGCAAGCTGAGACGATCGCAAACGCAGGCCGACTGTGAGGGCTCCCAATCGGAGGCGGAGGCGGAGG---ATGGACTGCAGCTGGACTCCCGCCAGCGATTCCGCAGCGTGGAGATGCTCTCGAATCGGGACAAGGAGAGAACGGCCCAGTATGGACCGTATAGGCGAACCGGTTACATGGAGTACAAT---CAGTCGGGCAGCCGACGATTCAGCATCGAGGACTCCCGCTTCCCGGCGGCCCA
droRho1	scf7180000778226:46312-46577 -		----------------------------------------------------------------------GATCTCTCGGGGCCCGAAAGAGCCCGCAACTCCCGGAAACTCAGGCGATCACAGACCCATGCCGAGGGCGATGGCTCCCAGTCGGAGGC------GGAGG---AGGGACTGCAGCTGGACAGCCGGCAGCGGTTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGAGGACCGCCCAATATGGACCCTACCGGCGAACCGGTTACATGGAATACAAT---CAGTCGGGCAGCCGGCGCTTCAGCATCGAGGACTCCCGCTTTCCGGCGGCCCA
droBia1	scf7180000302143:2527606-2527878 -		AATG--------------------------------------------------------------ATG-GACCTCTCGGGTCCAGAAAGGACCCGCAACTCCCGCAAGCTGAGAAGGTCGCAAACCCATGCCGAGGGCGAGGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTGGACTCTCGCCAGCGCTTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGAGAACCGCCCAGTACGGGCCTTATAGGCGAACTGGGTACATGGAGTACAAC---CAGTCGGGCAGCCGCCGCTTCAGCATCGAGGACTCCCGCTTCCCGGCAGCCCA
droTak1	scf7180000415739:37115-37380 +		----------------------------------------------------------------------GATCTCTCGGGACCCGAAAGAGCTCGCAACTCCCGGAAGCTGAGACGCTCGCAAACCCAGGCGGACGGTGAGGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTGGACTCCCGCCAGAGATTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGCGAACAGCCCAGTATGGACCTTACAGGCGAACCGGTTACATGGAGTACAAT---CAGTCGGGTAGTCGGCGCTTCAGCATCGAGGACTCGCGATTCCCGGCGGCCCA
droEug1	scf7180000409672:6086132-6086404 +		AATG--------------------------------------------------------------ATG-GATCTCTCGGGTCCCGAAAGAGCTCGCAACTCCCGAAAGCTGAGACGCTCACAGACCCAAGCTGATGGAGATGGTTCCCAGTCGGAGGC------GGAGG---ATGGACTGCAGCTGGACTCCCGCCAGAGATTCCGCAGCGTGGAGATGCTCTCGAACAGGGACAAGGAAAGAACCGCCCAATATGGACCCTACAGGCGAACTGGTTACATGGAGTACAAT---CAGTCGGGAAGCCGGCGTTTCAGCATCGAGGACTCCCGGTTCCCGGCTGCCCA
dm3	chr2R:18183487-18183759 +		AATG--------------------------------------------------------------ATG-GATCTCTCGGGACCAGAAAGAGCCCGCAACTCACGGAAGCTCAGACGATCGCAGACCCATGCCGATGGTGATGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAACTGGACTCTCGCCAGCGATTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAAAGAACCGCCCAATACGGACCGTACAGACGCACTGGTTACATGGAGTACAAT---CAGTCGGGCAGTCGACGCTTTAGCATCGAGGACTCCCGATTCCCCGCCGCCCA
droSim2	2r:18721491-18721756 +		----------------------------------------------------------------------GATCTCTCAGGACCCGAACGAGCCCGCAACTCCCGGAAGCTCAGACGATCGCAGACCCATGCCGATGGTGATGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTTGACTCTCGCCAGCGATTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGAGAACCGCCCAATACGGACCGTACAGACGCACTGGTTACATGGAGTACAAT---CAGTCGGGCAGTCGACGTTTTAGCATCGAGGACTCCCGCTTCCCCGCCGCCCA
droSec2	scaffold_9:1493531-1493803 +		AATG--------------------------------------------------------------ATG-GATCTCTCAGGACCCGAAAGAGCCCGCAACTCCCGGAAGCTCAGACGATCGCAGACCCATGCCGATGGTGATGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTGGACTCTCGCCAGCGATTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGAGAACCGCCCAATACGGACCGTACAGACGCACTGGTTACATGGAGTACAAT---CAGTCGGGCAGTCGACGCTTTAGCATCGAGGACTCCCGCTTCCCCGCCGCCCA
droYak3	2R:17934715-17934980 +		----------------------------------------------------------------------GATCTCTCGGGACCCGAAAGAGCTCGCAACTCCCGGAAGCTGAGACGATCGCAGACCCATGCCGATGGTGAGGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTAGACTCGCGGCAGAGATTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGCGAACCGCCCAGTATGGACCGTATAGACGCACTGGCTACATGGAGTACAAT---CAGTCGGGCAGTCGGCGCTTTAGCATCGAGGATTCGCGGTTCCCCGCCGCTCA
droEre2	scaffold_4845:12324271-12324543 +		AATG--------------------------------------------------------------ATG-GATCTCTCGGGACCCGAAAGAGCCCGCAACTCGCGGAGGCTCAGACGATCGCAGACCCATGCCGATGGCGACGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTGGACTCTCGGCAGCGGTTCCGCAGCGTGGAGATGCTCTCAAACCGGGAGAAGGAGAGAACCGCCCAATATGGACCGTACAGACGCACTGGCTACATGGAGTACAAT---CAGTCGGGCAGCCGACGCTTTAGCATCGAGGACTCCCGATTCCCCGCCGCCCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

CCTGCATGCAGAAGTTACTACGTAAACCTAAATAACGTGAAGATAATCGAGAATATGCCAATAATCATGTGATCTCTTGGGCAACGAAAGACCACGT---TTACGTAAGCTGCGACGTTCACAGACCCAAGCGGATGGAGAGAACTCTCATTCGGAGCA------GGAGAACGATGATTTGCAA----------------------------------------------------------------------------------------TTGGCTATGTGGGTTACACCAATCAGTCGGGCAGTCGTCGCTTCAGCATCGAGGACTCACGTTTCCCTCCGGCCCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................TCTCTTGGGCAACGAAAGACCACGT---T.......................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	1	0	0
......................................................................GATCTCTTGGGCAACGAAAGACCACGT---T.......................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	1	0	0
.........................................................................................................................CAGACCCAAGCGGATGGA.................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	1	0
.....ATGCAGAAGTTACTACGTAAA..................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	1	0
...........................................................................................................................GACCCAAGCGGATGGAGAGA.............................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0
.........................................................................................................................CAGACCCAAGCGGATGGAGA...............................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0
..........................................................................................................................AGACCCAAGCGGATGGAGA...............................................................................................................................................................................................................	19	4	0.25	1	0	0	1	0	0
.................................................................................................................................AGCGGATGGAGAGAACTCT........................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0
...........................................................................................................................................GAGAACTCTCATTCGGAGC..............................................................................................................................................................................................	19	4	0.25	1	0	0	0	1	0
............................................................................................................................ACCCAAGCGGATGGAGAGAACTCTC.......................................................................................................................................................................................................	25	4	0.25	1	1	0	0	0	0
.............................................................................................................................CCCAAGCGGATGGAGAGAAC...........................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0

droVir3

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGGCTACATGGAGTACAGCACGCAGTCGGGCAGTCGACGCTTCAGCATTGAAGACTCACGTTTTCCGGCCGCGCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................GTACAGCACGCAGTCGGGCAGT.........................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................GTCGACGCTTCAGCATTGA........................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATGGAGTACAGCACGCAGTCGGGCAGT.........................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................TACATGGAGTACAGCACGCA...................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................GTACAGCACGCAGTCGGGCAGTC........................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................GCTACATGGAGTACAGCACGCAGTCGGGC............................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ACATGGAGTACAGCACGCAGT.................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGGATATATGGAATACAGTACGCAGTCCGGCAGTCGACGCTTCAGCATCGAGGACTCGCGTTTTCCGGCTGCACA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................................TCAGCATCGAGGACTCGC................	18	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................CTTCAGCATCGAGGACTCGC................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ACTGGATATATGGAATACAGTACGC....................................................	25	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGACGCTTCAGCATCGAGG......................	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................ATACAGTACGCAGTCCGGCAGTCGA......................................	25	1	1.00	1	1	0	0	0	0	0

droGri2

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGGCTACATGGAGTACAACACGCAGTCTGGCAGTCGACGCTTTAGCATCGAGGACTCACGCTTTCCGGCAGCCCG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

----------------------------------------------------------------------GATCTCTCGGGAA--GCAACAGGCCGCAA-TCACGAAAGCTTCGTCGCTCCCAGACCCAGGCCGACGGCGATGCCTCCCAGTCCGAGGG------CGAGG---ACGGACTGCAGCTGGACACGTGCCAGAGATTCCGCAGCGTGGAGATGCTCTCCAACAGGGACAAGGAACGGACAGCCCAGTACGGTCCGCGCAGGCGCACCGGCTACATGGAGTACAAC---CAATCGGGCAGTCGTCGCTTCAGCATCGAGGACTCGCGCTTCCCGGCGGCGCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................GACAAGGAACGGACAGCCCA................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CAGAGATTCCGCAGCGTGGA....................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................G------CGAGG---ACGGACTGCAGCT..................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................GGCGATGCCTCCCAGTCCGAGGG------C......................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GTACAAC---CAATCGGGCAGT.........................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GGACAAGGAACGGACAGCCCA................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................ATGCTCTCCAACAGGGACAAGG.............................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................GG---ACGGACTGCAGCTGGACACGTGC........................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GAGATGCTCTCCAACAGGGACA................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................TACAAC---CAATCGGGCAGT.........................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TACAAC---CAATCGGGCAGTCGTCGCTTC................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................GAGTACAAC---CAATCGGGC............................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGTCGCTTCAGCATCGAGGA.....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................GGCCGCAA-TCACGAAAGCTTCGTCG.......................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................ACAGGGACAAGGAACGGACAGCCCA................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................GATCTCTCGGGAA--GCAACA.................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AGCCCAGTACGGTCCGCGCAGG................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GTACGGTCCGCGCAGGCGCACCG.........................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GACAGCCCAGTACGGTCCGC.....................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................ATGCCTCCCAGTCCGAGGG------CGAGG---ACG............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................GGACTGCAGCTGGACACG...........................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GATGCTCTCCAACAGGGACAAGG.............................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................CCGCAGCGTGGAGATGCTCTCC..........................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GAGGACTCGCGCTTCCCGGCGGCGCA	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................CAGACCCAGGCCGACGGCG................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................CTCCCAGTCCGAGGG------CGAGG---ACG............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................CACGAAAGCTTCGTCGCTCCCAGA...............................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ACTCGCGCTTCCCGGCGGCG..	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GAGATGCTCTCCAACAGGGA..................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GGGACAAGGAACGGACAGCCC.................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AGAGATTCCGCAGCGTGGA....................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................GGCCGCAA-TCACGAAAGC..............................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GGTCCGCGCAGGCGCACCGG........................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CAAC---CAATCGGGCAGTCGTCG....................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GTACAAC---CAATCGGGCAGTCGTCGCT..................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AATCGGGCAGTCGTCGCT..................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ACATGGAGTACAAC---CAATCGGGCAGTC........................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GGACTCGCGCTTCCCGGCGGC...	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................AAAGCTTCGTCGCTCCCA.................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................CTCTCGGGAA--GCAACAGGCCGCAA-T.......................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GATTCCGCAGCGTGGAGATGCTCTC...........................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................GACTGCAGCTGGACACGTGC........................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................A-TCACGAAAGCTTCGTCGCTCCC..................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................GG------CGAGG---ACGGACTGCAGCTGGACAC............................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................CTCGCGCTTCCCGGCGGCG..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GGACACGTGCCAGAGATTCCGCAGCGT.......................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................ATCTCTCGGGAA--GCAACAGGC..............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................CGTCGCTCCCAGACCCAGGC........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................GAGG---ACGGACTGCAGCTGGAC..............................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................CTACATGGAGTACAAC---CAATCGGGC............................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................CGAAAGCTTCGTCGCTCC...................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AGCCCAGTACGGTCCGCGCAG.................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................CCCAGTCCGAGGG------CGAGG---ACGGAC.........................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GATTCCGCAGCGTGGAGATGCTC.............................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ATCGGGCAGTCGTCGCTTCAGCAT...........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GATGCTCTCCAACAGGGAC.................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

----------------------------------------------------------------------GATCTCTCGGGAA--GCAACAGGCCGCAA-TCACGAAAGCTTCGTCGCTCCCAGACCCAGGCCGACGGCGATGCCTCCCAGTCCGAGGG------CGAGG---ACGGACTGCAGCTGGACACGTGCCAGAGATTCCGCAGCGTGGAGATGCTCTCCAACAGGGACAAGGAACGGACAGCCCAGTACGGTCCGCGCAGGCGCACCGGCTACATGGAGTACAAC---CAATCGGGCAGTCGTCGCTTCAGCATCGAGGACTCGCGCTTCCCGGCGGCGCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................CTACATGGAGTACAAC---CAATCGGGC............................................	25	1	4.00	4	4	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AGTCGTCGCTTCAGCATCGAGGACT...................	25	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................G---ACGGACTGCAGCTGGACACGT..........................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................GCCTCCCAGTCCGAGGG------C......................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................GATGCTCTCCAACAGGGACAAGG.............................................................................................................	23	1	2.00	2	0	1	0	0	0	1
.............................................................................................................................................................................................................................................................................................GTACAAC---CAATCGGGCAGT.........................................	19	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................GCCTCCCAGTCCGAGGG------CGAGG---ACGGACT........................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AAC---CAATCGGGCAGTCGTCGCTT.................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................CGTCGCTCCCAGACCCAGGC........................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................GTCCGAGGG------CGAGG---ACGGACTGC......................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................CAAGGAACGGACAGCCCAGTACG...........................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ACTCGCGCTTCCCGGCGGCG..	20	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................GCCAGAGATTCCGCAGCGTGGA....................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................CATCGAGGACTCGCGCTTCCCGGCGGC...	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AC---CAATCGGGCAGTCGTCGCTTCAGC.............................	26	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................CTCCAACAGGGACAAGGAACG.........................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................CGGACTGCAGCTGGACACGT..........................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GACTCGCGCTTCCCGGCGGC...	20	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................AACAGGGACAAGGAACGGACAGCCCAGT..............................................................................................	28	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................CTCCCAGTCCGAGGG------CGAGG---ACGGACT........................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CAGCATCGAGGACTCGCGCTTCCCG........	25	1	1.00	1	0	0	0	0	0	1

droAna3

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGTACATGGAGTATAAT---CAGTCGGGCAGCCGGCGTTTGAGCATCGAGGATTCACGGTTCCCGGCAGCCCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................................................................................ATCGAGGATTCACGGTTCCC.........	20	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................GTACATGGAGTATAAT---CAGTCGGGC............................................	25	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................GTATAAT---CAGTCGGGCAGCC........................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCGGGCAGCCGGCGTTTGA...............................	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GGATTCACGGTTCCCGGCAGC...	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GTATAAT---CAGTCGGGCAGC.........................................	19	1	1.00	1	0	0	0	0	1	0

droBip1

----------------------------------------------------------------------GATCTTTCGGGGCCGGAGAGAGCTCGCAACTCCCGAAAGCTAAGACGTTCCCAAACCCATCCCGATGGCGATGGCTCTCAGTCGGACAT------GGAGG---AAGGGCTCCAGCTGGACTCCCGCCAGAGGTTCCGCAGTGCCGAAATGCTCTCCAACCGAGACAAGGAGCGGCGGGCCCAGTACGGACCCTACCGGCGCACTGGGTACATGGAGTACAAT---CAGTCGGGCAGCCGGCGCTTGAGCATCGAGGATTCCCGCTTCCCGGCAGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-------------------------------------------------------------------------------------------------------CGCAAGCTTCGACGCTCTCAGACCCATGCCGAGGGCGAGGGCTCCCAGTCGGAGGC------GGAGGACTCTAGCCTGCAGCTGGACAGCCGCCAGAGGTTCCGCAGCGTGGAGATGCTGTCCAACCGGGACAAGGAGCGCACAGCGCAGTACGGACCCTACCGCCGCACAGGCCACATGGAATACAGC---CAGTCTGGCAGCCGGCGCTTTAGCATCGAGGACTCGCGCTTCCCGGCCGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGGTTACATGGAGTACAAC---CAATCGGGAAGTCGGATTTTCAGCACCGAGGATGCCCGTTTCCCAGCAGCTCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATG--------------------------------------------------------------ATG-GATCTCTCGGGACCCCAAAGAGCCCGCAACTCCCGCAAGCTGAGACGATCGCAAACGCAGGCCGACTGTGAGGGCTCCCAATCGGAGGCGGAGGCGGAGG---ATGGACTGCAGCTGGACTCCCGCCAGCGATTCCGCAGCGTGGAGATGCTCTCGAATCGGGACAAGGAGAGAACGGCCCAGTATGGACCGTATAGGCGAACCGGTTACATGGAGTACAAT---CAGTCGGGCAGCCGACGATTCAGCATCGAGGACTCCCGCTTCCCGGCGGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

----------------------------------------------------------------------GATCTCTCGGGGCCCGAAAGAGCCCGCAACTCCCGGAAACTCAGGCGATCACAGACCCATGCCGAGGGCGATGGCTCCCAGTCGGAGGC------GGAGG---AGGGACTGCAGCTGGACAGCCGGCAGCGGTTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGAGGACCGCCCAATATGGACCCTACCGGCGAACCGGTTACATGGAATACAAT---CAGTCGGGCAGCCGGCGCTTCAGCATCGAGGACTCCCGCTTTCCGGCGGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AATG--------------------------------------------------------------ATG-GACCTCTCGGGTCCAGAAAGGACCCGCAACTCCCGCAAGCTGAGAAGGTCGCAAACCCATGCCGAGGGCGAGGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTGGACTCTCGCCAGCGCTTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGAGAACCGCCCAGTACGGGCCTTATAGGCGAACTGGGTACATGGAGTACAAC---CAGTCGGGCAGCCGCCGCTTCAGCATCGAGGACTCCCGCTTCCCGGCAGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

----------------------------------------------------------------------GATCTCTCGGGACCCGAAAGAGCTCGCAACTCCCGGAAGCTGAGACGCTCGCAAACCCAGGCGGACGGTGAGGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTGGACTCCCGCCAGAGATTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGCGAACAGCCCAGTATGGACCTTACAGGCGAACCGGTTACATGGAGTACAAT---CAGTCGGGTAGTCGGCGCTTCAGCATCGAGGACTCGCGATTCCCGGCGGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AATG--------------------------------------------------------------ATG-GATCTCTCGGGTCCCGAAAGAGCTCGCAACTCCCGAAAGCTGAGACGCTCACAGACCCAAGCTGATGGAGATGGTTCCCAGTCGGAGGC------GGAGG---ATGGACTGCAGCTGGACTCCCGCCAGAGATTCCGCAGCGTGGAGATGCTCTCGAACAGGGACAAGGAAAGAACCGCCCAATATGGACCCTACAGGCGAACTGGTTACATGGAGTACAAT---CAGTCGGGAAGCCGGCGTTTCAGCATCGAGGACTCCCGGTTCCCGGCTGCCCA	Size	Hit Count	Total Norm	Total
No Reads

dm3

AATG--------------------------------------------------------------ATG-GATCTCTCGGGACCAGAAAGAGCCCGCAACTCACGGAAGCTCAGACGATCGCAGACCCATGCCGATGGTGATGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAACTGGACTCTCGCCAGCGATTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAAAGAACCGCCCAATACGGACCGTACAGACGCACTGGTTACATGGAGTACAAT---CAGTCGGGCAGTCGACGCTTTAGCATCGAGGACTCCCGATTCCCCGCCGCCCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................CCCAGTCGGAGGC------GGAGG---AC.............................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TGATGGATCCCAGTCGGAGGC------G......................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................GCTTTAGCATCGAGGACTCCC................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGTC........................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GGAGTACAAT---CAGTCGGGCAGTC........................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................ATCGCAGACCCATGCCGATG...................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ACATGGAGTACAAT---CAGTCGGGCAGT.........................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GACGCTTTAGCATCGAGGACTCCC................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................GGTGATGGATCCCAGTCGGAGGC------.......................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GACCCATGCCGATGGTGAT..............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................CAAT---CAGTCGGGCAGTCGAC.....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGATGCTCTCGAACCGGGACAA...............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GGATCCCAGTCGGAGGC------GGAGG---AC.............................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................GATGGATCCCAGTCGGAGGC------GGAG...................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TTCCGCAGCGTGGAGATGCCGA............................................................................................................................	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSim2

----------------------------------------------------------------------GATCTCTCAGGACCCGAACGAGCCCGCAACTCCCGGAAGCTCAGACGATCGCAGACCCATGCCGATGGTGATGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTTGACTCTCGCCAGCGATTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGAGAACCGCCCAATACGGACCGTACAGACGCACTGGTTACATGGAGTACAAT---CAGTCGGGCAGTCGACGTTTTAGCATCGAGGACTCCCGCTTCCCCGCCGCCCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................AACCGCCCAATACGGACC.......................................................................................	18	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGTCGACG....................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TGATGGATCCCAGTCGGAGGC------.......................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................CTCAGGACCCGAACGAGCCCGC...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CGAACCGGGACAAGGAGAGAACCGCC..................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGGAGAGAACCGCCCAATACGGACC.......................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GACGTTTTAGCATCGAGG......................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CAATACGGACCGTACAGACGCACTG.........................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ACTGCAGCTTGACTCTCGCC.......................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AAT---CAGTCGGGCAGTCGA......................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CGTTTTAGCATCGAGGAC....................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGTCGACGTTTT................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................ATACGGACCGTACAGACGCACTGGTTAC....................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCGGAGGC------GGAGG---ACGGACT........................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GTACAGACGCACTGGTTACATGGA...............................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGT.........................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CAGACGCACTGGTTACATGGA...............................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GATTCCGCAGCGTGGAGATGCTCT............................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................ACCGGGACAAGGAGAGAACC.....................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CAAGGAGAGAACCGCCCAATACGGACC.......................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AATG--------------------------------------------------------------ATG-GATCTCTCAGGACCCGAAAGAGCCCGCAACTCCCGGAAGCTCAGACGATCGCAGACCCATGCCGATGGTGATGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTGGACTCTCGCCAGCGATTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGAGAACCGCCCAATACGGACCGTACAGACGCACTGGTTACATGGAGTACAAT---CAGTCGGGCAGTCGACGCTTTAGCATCGAGGACTCCCGCTTCCCCGCCGCCCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................AACTCCCGGAAGCTCAGACGATCGCA.................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................GCTCTCGAACCGGGACAAGGAG...........................................................................................................	22	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................GGTTACATGGAGTACAAT---C....................................................	19	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................................................GGGACAAGGAGAGAACCGC...................................................................................................	19	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................TGGTTACATGGAGTACAAT---CA...................................................	21	1	1.00	1	0	1	0	0
....................................................................................................................................................CAGTCGGAGGC------GGAGG---ACGGACTGC......................................................................................................................................................................	25	1	1.00	1	0	0	0	1
.........................................................................................................................................................................................................ATTCCGCAGCGTGGAGATGCTCT............................................................................................................................	23	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGTCGACG....................................	24	1	1.00	1	0	0	1	0
...............................................................................................................................CATGCCGATGGTGATGGATCCCAGT....................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGTC........................................	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................AATACGGACCGTACAGACGCACTGG........................................................................	25	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGT.........................................	19	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................AGTCGGGCAGTCGACGCTTTAGC.............................	23	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGTCGAC.....................................	23	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................GCCCAATACGGACCGTACAGAC...............................................................................	22	1	1.00	1	0	0	1	0
................................................................................................CAACTCCCGGAAGCTCAGACGAT.....................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................GATTCCGCAGCGTGGAGATG................................................................................................................................	20	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................AAGGAGAGAACCGCCCAATACGGACC.......................................................................................	26	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................GAGTACAAT---CAGTCGGGCAGTC........................................	22	1	1.00	1	0	1	0	0

droYak3

----------------------------------------------------------------------GATCTCTCGGGACCCGAAAGAGCTCGCAACTCCCGGAAGCTGAGACGATCGCAGACCCATGCCGATGGTGAGGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTAGACTCGCGGCAGAGATTCCGCAGCGTGGAGATGCTCTCGAACCGGGACAAGGAGCGAACCGCCCAGTATGGACCGTATAGACGCACTGGCTACATGGAGTACAAT---CAGTCGGGCAGTCGGCGCTTTAGCATCGAGGATTCGCGGTTCCCCGCCGCTCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................ATGGACCGTATAGACGCACTGGC.......................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGTCGGC.....................................	23	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
.....................................................................................................................................................AGTCGGAGGC------GGAGG---ACGGACT........................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................AGAGCTCGCAACTCCCGGAAGCTGAG..........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................ATGGACCGTATAGACGCACTG.........................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................AGGAGCGAACCGCCCAGTATGG..........................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................AAT---CAGTCGGGCAGTCGGCG....................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................GCTCGCAACTCCCGGAAGC..............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................ATCGCAGACCCATGCCGATGGTGAGG.............................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GTGGAGATGCTCTCGAACCGGGACA................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................GGCTACATGGAGTACAAT---CAGTCG...............................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................AGATGCTCTCGAACCGGGACAAGGAGC..........................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GCAGCGTGGAGATGCTCTCGAACCGGGAC.................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................CTACATGGAGTACAAT---CAGTCG...............................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................CTCGGGACCCGAAAGAGCTCG............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................CGCAACTCCCGGAAGCTGAGACGATCG...................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................ACTCCCGGAAGCTGAGACGAT.....................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................GAAAGAGCTCGCAACTCCCGGAAGCT.............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CTTTAGCATCGAGGATTCGC................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................AAT---CAGTCGGGCAGTCGGCGCTTTAGCAT...........................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................TTAGCATCGAGGATTCGCGG..............	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................CGCAGACCCATGCCGATGGTGAGGGA...........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................GCAGAGATTCCGCAGCGTGGAGA..................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................ACTCCCGGAAGCTGAGACGATCGC..................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................CGGAGGC------GGAGG---ACGGACTGCAGCTA.................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................ATGGACCGTATAGACGCACT..........................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................GGACCCGAAAGAGCTCGCAACT.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................CGCAGACCCATGCCGATGGTGAGG.............................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GAACCGCCCAGTATGGACC.......................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GATGCTCTCGAACCGGGACAAGGA............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................GTGAGGGATCCCAGTCGGAGGC------GG.....................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GAGATGCTCTCGAACCGGGACAAGGA............................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................TTAGCATCGAGGATTCGCGGTTCCCCGC......	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................GATCCCAGTCGGAGGC------GGAGG---...............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................AAT---CAGTCGGGCAGTCGGC.....................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................GCTGAGACGATCGCAGACCCATGCCGATG...................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................AAAGAGCTCGCAACTCCCGGAAGCT.............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................AGAGATTCCGCAGCGTGGAGATGCTCT............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................GAGTACAAT---CAGTCGGGCAGTCGGC.....................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TTTAGCATCGAGGATTCGCGGT.............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................CTACATGGAGTACAAT---CAGTCGGGC............................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................CAGACCCATGCCGATGGTGAGG.............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CGAACCGGGACAAGGAGCGAACCGCCCA................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GAACCGGGACAAGGAGCGAACC.....................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................CCGCAGCGTGGAGATGCTCTC...........................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TCCGCAGCGTGGAGATGCT..............................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................ATGCTCTCGAACCGGGACAAGGAGC..........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................AGCTAGACTCGCGGCAGAGATTCCGC............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AATG--------------------------------------------------------------ATG-GATCTCTCGGGACCCGAAAGAGCCCGCAACTCGCGGAGGCTCAGACGATCGCAGACCCATGCCGATGGCGACGGATCCCAGTCGGAGGC------GGAGG---ACGGACTGCAGCTGGACTCTCGGCAGCGGTTCCGCAGCGTGGAGATGCTCTCAAACCGGGAGAAGGAGAGAACCGCCCAATATGGACCGTACAGACGCACTGGCTACATGGAGTACAAT---CAGTCGGGCAGCCGACGCTTTAGCATCGAGGACTCCCGATTCCCCGCCGCCCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................AGCGGTTCCGCAGCGTGGAGAT.................................................................................................................................	22	1	8.00	8	0	0	0	0	0	0	8
...............................................................................................................................................................................................................CAGCGTGGAGATGCTCTCAAACCGGG...................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	3
...........................................................................................................................................................................................................................GCTCTCAAACCGGGAGAAGGAGA..........................................................................................................	23	1	2.00	2	0	0	0	1	1	0	0
...................................................................................................................................................................................................GCAGCGGTTCCGCAGCGTGGA....................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TTTAGCATCGAGGACTCCCGATTCCC.........	26	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................GACCCATGCCGATGGCGACG.............................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................GGAGATGCTCTCAAACCGGGAGAAGGAG...........................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................GGTTCCGCAGCGTGGAGATGCT..............................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0
............................................................................................CCCGCAACTCGCGGAGGCTCAGACG.......................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................GCTCTCAAACCGGGAGAAGGAGAGAA.......................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................GACCCATGCCGATGGCGAC..............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................GGAGGCTCAGACGATCGCAGACC.............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................GACTCTCGGCAGCGGTTCCGCAGC.........................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................ACCGCCCAATATGGACCGTACAGACGCA............................................................................	28	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................CAAACCGGGAGAAGGAGAG.........................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................GGATCCCAGTCGGAGGC------GGA....................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
AATG--------------------------------------------------------------ATG-GATCTCTCGGGAC.........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.......................................................................ATCTCTCGGGACCCGAAAGAGC...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGCC........................................	20	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CAATATGGACCGTACAGACGC.............................................................................	21	1	1.00	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................GCTGGACTCTCGGCAGCGGTTCC..............................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................CTGGACTCTCGGCAGCGGTTCCGCAGCGT.......................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................CTCAAACCGGGAGAAGGAG...........................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.......................................................................ATCTCTCGGGACCCGAAAG..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................CAGACGATCGCAGACCCATGCCGA.....................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................CATGGAGTACAAT---CAGTCGGGC............................................	22	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................ACAGACGCACTGGCTACATGGAGTACA..........................................................	27	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................GCAGCCGACGCTTTAGCATCGAGGA.....................	25	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................GAGAACCGCCCAATATGGACCGT.....................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGCCGACG....................................	24	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................TAGCATCGAGGACTCCCGATTCCCCGC......	27	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................CCGTACAGACGCACTGGCTACATGGAGT.............................................................	28	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TACATGGAGTACAAT---CAGTCGGGC............................................	24	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................ACGCACTGGCTACATGGAGTACA..........................................................	23	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................CTACATGGAGTACAAT---CAGT.................................................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................CTCAGACGATCGCAGACCCATGCCGATGGC.................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................GTACAAT---CAGTCGGGCAGCCGAC.....................................	23	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................CGCAGACCCATGCCGATGGCGACGG............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................CAAACCGGGAGAAGGAGA..........................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................GATGCTCTCAAACCGGGA..................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................AGACCCATGCCGATGGCGACGGATCC........................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................GGCTACATGGAGTACAAT---CAGTCG...............................................	24	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................ACATGGAGTACAAT---CAGTCG...............................................	20	1	1.00	1	0	0	0	1	0	0	0

-12.2	-12.1	-11.8	-11.8

dwi_272

scf2_1100000002604:2344-2494 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads