ID:

dwi_267

 Coordinate:

scf2_1100000002384:9759-9909 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.6 -18.0 -18.0

Flybase annnotation

exon [dwil_GLEANR_2944:5]; CDS [Dwil\GK20250-cds]; intron [Dwil\GK20250-in]

Repeatable elements

NameClassFamilyStrand
BEL-1_DWil-LTRLTRPao-
BEL-1_DWil-I-intLTRPao-
mature
  1. scf2_1100000002619:696-720 +
  2. scf2_1100000001231:1062-1086 +
  3. scf2_1100000002702:15-39 +
  4. scf2_1100000001396:4400-4424 +
  5. scf2_1100000010709:345-369 +
  6. scf2_1100000003173:615-639 +
  7. dwi_267  scf2_1100000002384:9771-9795 +
  8. scf2_1100000002384:13083-13107 +
  9. scf2_1100000014490:230-254 +
  10. scf2_1100000004666:4128-4152 +
  11. scf2_1100000004813:8462-8486 +
  12. scf2_1100000004852:184520-184544 +
  13. scf2_1100000004895:19558-19582 +
  14. scf2_1100000004936:29443-29467 +
  15. scf2_1100000004936:115896-115920 +
  16. scf2_1100000004961:474087-474111 +
  17. scf2_1100000004961:477629-477653 +
  18. scf2_1100000004963:218039-218063 +
  19. scf2_1100000004968:1692426-1692450 +
  20. scf2_1100000000141:719-743 +
  21. scf2_1100000002921:4360-4384 +
  22. scf2_1100000004961:1487634-1487658 +
  23. scf2_1100000004961:1490196-1490220 +
  24. scf2_1100000004961:3184875-3184899 +
  25. scf2_1100000004968:2613844-2613868 +
  26. scf2_1100000004969:195269-195293 +
star
  1. scf2_1100000001317:800-824 +
  2. scf2_1100000001414:897-921 +
  3. scf2_1100000002870:748-772 +
  4. scf2_1100000005532:1101-1125 +
  5. scf2_1100000010709:430-454 +
  6. scf2_1100000003173:700-724 +
  7. scf2_1100000011343:775-799 +
  8. scf2_1100000002181:2917-2941 +
  9. scf2_1100000002346:16215-16239 +
  10. dwi_267  scf2_1100000002384:9856-9880 +
  11. scf2_1100000004529:56724-56748 +
  12. scf2_1100000004529:64994-65018 +
  13. scf2_1100000004666:4213-4237 +
  14. scf2_1100000004681:42180-42204 +
  15. scf2_1100000004813:8547-8571 +
  16. scf2_1100000004946:197445-197469 +
  17. scf2_1100000004946:210154-210178 +
  18. scf2_1100000004936:119801-119825 +
  19. scf2_1100000004961:1624907-1624931 +
  20. scf2_1100000007322:211-235 +
  21. scf2_1100000002619:782-806 +
  22. scf2_1100000002639:308-332 +
  23. scf2_1100000014490:316-340 +
  24. scf2_1100000004816:34780-34804 +
  25. scf2_1100000004816:37981-38005 +
  26. scf2_1100000004865:77581-77605 +
  27. scf2_1100000004887:64474-64498 +
  28. scf2_1100000004946:201083-201107 +
  29. scf2_1100000004946:213173-213197 +
  30. scf2_1100000004947:1083781-1083805 +
  31. scf2_1100000004959:7910-7934 +
  32. scf2_1100000004963:218125-218149 +
  33. scf2_1100000004967:2172037-2172061 +
  34. scf2_1100000004968:1725059-1725083 +
  35. scf2_1100000004973:1968-1992 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGAAAAAAGGTATATTATCGAAAGCAATGAAAGAACGGGTGTTCGGGTTAGATGCTCATACTGGATTGAATATGGCGATTTACAGGAGAACCCTTCGTCACCCTCCTCAGTATGACCGAATTCGGTTTTGGAAAAAACCCTACCCCTCACTCTCTGCTGTTCACCCGGTGGCGTGAACATACCGCACCCCTTGCAACAAGTTGCAATTGCCTCGCTGGACATGTCTAAGGATGGGGGATGGCAGCGTTCT
**************************************************************......((((.(((..((....(((((..............)))))....))..))).))))((((((....))))))..............((((((......))))))******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 V119
head
 M020
head
..............................................................TGGATTGAATATGGCGATTTACAGG.................................................................................................................................................................... 25 0 20 3.95 79 49 30 0 0 0
...................................................................................................................................................TCACTCTCTGCTGTTCACCCGGTGG............................................................................... 25 0 20 2.55 51 51 0 0 0 0
..................................................................................................................................................................................................................CCTCGCTGGACATGTCTAAGGATGGG............... 26 0 20 2.10 42 10 32 0 0 0
...................................................................................................................................................................................................................CTCGCTGGACATGTCTAAGGATGGG............... 25 0 20 2.00 40 0 40 0 0 0
..........................................................................................................CTCAGTATGACCGAATTCGGTTT.......................................................................................................................... 23 0 20 1.85 37 0 37 0 0 0
...........................................................................................................................................................TGCTGTTCACCCGGTGGCGTGA.......................................................................... 22 0 20 1.35 27 27 0 0 0 0
..........................................................................................................................................................................................................TGCAATTGCCTCGCTGGACATGTCT........................ 25 0 20 1.35 27 23 4 0 0 0
...................................................................................................................................................TCACTCTCTGCTGTTCACCCGGTGGCG............................................................................. 27 0 20 1.25 25 25 0 0 0 0
..................................................................................................................................................................................................................CCTCGCTGGACATGTCTAAGGATGG................ 25 0 20 1.20 24 0 24 0 0 0
..........................................................................................................................................................................................................TGCAATTGCCTCGCTGGACATGTC......................... 24 0 20 1.15 23 0 23 0 0 0
........................................................................................................TCCTCAGTATGACCGAATTCGGTTT.......................................................................................................................... 25 0 20 0.95 19 18 1 0 0 0
........................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGATG.......... 25 0 20 0.80 16 0 15 1 0 0
..........................................................................................................................................................................................................TGCAATTGCCTCGCTGGACATGTCTA....................... 26 0 20 0.70 14 0 14 0 0 0
..........................................................................................................CTCAGTATGACCGAATTCGGTTTTGGA...................................................................................................................... 27 0 20 0.65 13 13 0 0 0 0
..........................................................................................................CTCAGTATGACCGAATTCGGTTTTGGAA..................................................................................................................... 28 0 20 0.60 12 1 11 0 0 0
..............................................................TGGATTGAATATGGCGATTTACAGGA................................................................................................................................................................... 26 0 20 0.55 11 11 0 0 0 0
................TATCGAAAGCAATGAAAGAACGGG................................................................................................................................................................................................................... 24 0 20 0.50 10 6 3 1 0 0
.........................................................................TGGCGATTTACAGGAGAACCCTTCGT........................................................................................................................................................ 26 0 20 0.40 8 2 6 0 0 0
....................................................................................................................................................................................................................TCGCTGGACATGTCTAAGGATGGGGG............. 26 0 20 0.40 8 2 6 0 0 0
.............................................................................................................................................TACCCCTCACTCTCTGCTGTTCACC..................................................................................... 25 0 20 0.40 8 8 0 0 0 0
..............ATTATCGAAAGCAATGAAAGAACGG.................................................................................................................................................................................................................... 25 0 20 0.35 7 5 2 0 0 0
..................TCGAAAGCAATGAAAGAACGGGTGT................................................................................................................................................................................................................ 25 0 20 0.30 6 0 6 0 0 0
...................................................................................................................................................................................................................CTCGCTGGACATGTCTAAGGATGGGG.............. 26 0 20 0.30 6 6 0 0 0 0
...................................................................TGAATATGGCGATTTACAGGAGAACCC............................................................................................................................................................. 27 0 20 0.30 6 0 6 0 0 0
..........................................................................................................................................................................................................TGCAATTGCCTCGCTGGACATG........................... 22 0 20 0.25 5 0 5 0 0 0
.........................................................................................................................................................................................................TTGCAATTGCCTCGCTGGACATGTC......................... 25 0 20 0.25 5 2 3 0 0 0
.....................................................................................................................................................................................................................CGCTGGACATGTCTAAGGATGGG............... 23 0 20 0.25 5 1 4 0 0 0
...............................................................................................................................TTTGGAAAAAACCCTACCCCTCACTCTC................................................................................................ 28 0 20 0.20 4 4 0 0 0 0
..............................................................................................................................................................................................................................TGTCTAAGGATGGGGGATGGC........ 21 0 20 0.20 4 0 4 0 0 0
....................................................................GAATATGGCGATTTACAGGAGAACCCT............................................................................................................................................................ 27 0 20 0.20 4 4 0 0 0 0
.......................................................................................................................................................TCTCTGCTGTTCACCCGGTGGCGTGA.......................................................................... 26 0 20 0.20 4 4 0 0 0 0
...............TTATCGAAAGCAATGAAAGAACGGGTG................................................................................................................................................................................................................. 27 0 20 0.20 4 1 3 0 0 0
.................................................................................................................TGACCGAATTCGGTTTTGGAAAAAACCC.............................................................................................................. 28 0 20 0.20 4 4 0 0 0 0
..............................................................................................................................................................................................................................TGTCTAAGGATGGGGGATGGCAGCGT... 26 0 20 0.20 4 1 3 0 0 0
....................................................................................................................................................................................................................TCGCTGGACATGTCTAAGGATGGGG.............. 25 0 20 0.20 4 0 4 0 0 0
.............TATTATCGAAAGCAATGAAAGAACG..................................................................................................................................................................................................................... 25 0 20 0.20 4 0 4 0 0 0
.........................................................CATACTGGATTGAATATGGCGATT.......................................................................................................................................................................... 24 0 5 0.20 1 0 1 0 0 0
................................................................................................................................................................................................................TGCCTCGCTGGACATGTCTAAGGATGG................ 27 0 20 0.20 4 0 3 0 1 0
..........................................................................................................................................................................................................TGCAATTGCCTCGCTGGACATGTCTT....................... 26 1 20 0.15 3 1 2 0 0 0
..............................................................................................................................................ACCCCTCACTCTCTGCTGTTCACCCGG.................................................................................. 27 0 20 0.15 3 3 0 0 0 0
........................................................................................................................................................CTCTGCTGTTCACCCGGTGGCGTG........................................................................... 24 0 20 0.15 3 3 0 0 0 0
........................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGG............. 22 0 20 0.15 3 3 0 0 0 0
...................................................................................................................................................................................................................CTCGCTGGACATGTCTAAGGATGG................ 24 0 20 0.15 3 0 3 0 0 0
..........................................................................................................CTCAGTATGACCGAATTCGGTTTTG........................................................................................................................ 25 0 20 0.15 3 0 3 0 0 0
................................................................................TTACAGGAGAACCCTTCGTCACCC................................................................................................................................................... 24 0 20 0.15 3 0 3 0 0 0
..............................................................................................................................................................................................................................TGTCTAAGGATGGGGGATGG......... 20 0 20 0.15 3 3 0 0 0 0
...............................................................................................................................................................................................................TTGCCTCGCTGGACATGTCTAAGGATG................. 27 0 20 0.15 3 0 3 0 0 0
.......................................................................................................................................AAACCCTACCCCTCACTCTCTGCTG........................................................................................... 25 0 20 0.15 3 3 0 0 0 0
..............................................................................................................................................................TGTTCACCCGGTGGCGTGAA......................................................................... 20 0 20 0.15 3 0 3 0 0 0
...........................................................................................................TCAGTATGACCGAATTCGGTTT.......................................................................................................................... 22 0 20 0.15 3 3 0 0 0 0
.......................................................................................................................................AAACCCTACCCCTCACTCTCTGCT............................................................................................ 24 0 20 0.10 2 2 0 0 0 0
..................................................................................................................................................................................................................CCTCGCTGGACATGTCTAAGGATTGG............... 26 1 20 0.10 2 0 2 0 0 0
.......................................................................................................................................................TCTCTGCTGTTCACCCGGTGGCGT............................................................................ 24 0 20 0.10 2 0 2 0 0 0
...............................................................................TTTACAGGAGAACCCTTCGTCACCCTCC................................................................................................................................................ 28 0 20 0.10 2 0 2 0 0 0
........................GCAATGAAAGAACGGGTGTTCGGG........................................................................................................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0
................................................................................TTACAGGAGAACCCTTCGTCACCCT.................................................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0
......................................................................................................CCTCCTCAGTATGACCGAATTCGGTTT.......................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
.........................................................................TGGCGATTTACAGGAGAACCCTTCG......................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................................................................................GTCTAAGGATGGGGGATGGCAGCGTT.. 26 0 20 0.10 2 2 0 0 0 0
.........................................................................................................................................................TCTGCTGTTCACCCGGTGGCGTGAACA....................................................................... 27 0 20 0.10 2 2 0 0 0 0
..............ATTATCGAAAGCAATGAAAGAACGGGT.................................................................................................................................................................................................................. 27 0 20 0.10 2 0 2 0 0 0
...............................................................................................TCGTCACCCTCCTCAGTATGACCGAATT................................................................................................................................ 28 0 20 0.10 2 2 0 0 0 0
..............ATTATCGAAAGCAATGAAAGAACG..................................................................................................................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0
...........................................................................................................TCAGTATGACCGAATTCGGTTTTG........................................................................................................................ 24 0 20 0.10 2 2 0 0 0 0
..................................................................................................TCACCCTCCTCAGTATGACCGAATTCGG............................................................................................................................. 28 0 20 0.10 2 2 0 0 0 0
.........................................................................................................................................ACCCTACCCCTCACTCTCTGCTGTTCA....................................................................................... 27 0 20 0.10 2 2 0 0 0 0
.....................................................................................................................................................................................................................CGCTGGACATGTCTAAGGATGG................ 22 0 20 0.10 2 0 2 0 0 0
........................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGAT........... 24 0 20 0.10 2 2 0 0 0 0
..........................................................................................................................TCGGTTTTGGAAAAAACCCTACCCCT....................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
..............ATTATCGAAAGCAATGAAAGAACGGGTG................................................................................................................................................................................................................. 28 0 20 0.10 2 2 0 0 0 0
...................................................................................................................................................................................................AACAAGTTGCAATTGCCTCGCTGGACA............................. 27 0 20 0.10 2 0 2 0 0 0
..........................................................................................................................................................................................................................GACATGTCTAAGGATGGGGGATGG......... 24 0 20 0.10 2 0 2 0 0 0
..............................................................................................................................................................................................................................TGTCTAAGGATGGGGGATGGCA....... 22 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................................................................................GTCTAAGGATGGGGGATGGCAGCG.... 24 0 20 0.10 2 2 0 0 0 0
.......................................................................................................................................................................................................................CTGGACATGTCTAAGGATGGG............... 21 0 20 0.05 1 0 0 0 1 0
...................................................................................................................................GAAAAAACCCTACCCCTCACTCTCTG.............................................................................................. 26 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................TCGCTGGACATGTCTAAGGATGGG............... 24 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGATC.......... 25 1 20 0.05 1 0 1 0 0 0
.......................AGCAATGAAAGAACGGGTGTTCGGG........................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
......................AAGCAATGAAAGAACGGGTGTTC.............................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................TGCAATTGCCTCGCTGGACA............................. 20 0 20 0.05 1 1 0 0 0 0
...............................................................GGATTGAATATGGCGATTTACAGGAGA................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGATGT......... 26 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................TCTGCTGTTCACCCGGTGGCGTGAA......................................................................... 25 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................TACCCCTCACTCTCTGCTGTTC........................................................................................ 22 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................CTACCCCTCACTCTCTGCTGTTCAC...................................................................................... 25 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGATG............ 23 3 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................................CTCTGGACATGTCTAAGGATGGGGG............. 25 1 20 0.05 1 0 1 0 0 0
................................................................................................................................................................................................TGCAACAAGTTGCAATTGCCTCGCTGGA............................... 28 0 20 0.05 1 1 0 0 0 0
.................................................................................TACAGGAGAACCCTTCGTCACCCTCCTCA............................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................CCCTACCCCTCACTCTCTGCTGTTC........................................................................................ 25 0 20 0.05 1 0 1 0 0 0
......................AAGCAATGAAAGAACGGGTGT................................................................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
.........................CAATGAAAGAACGGGTGTTC.............................................................................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0
............................................................................................................................................................GCTGTTCACCCGGTGGCG............................................................................. 18 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................ACATGTCTAAGGATGGGGGATGGC........ 24 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................................................................CCTCGCTGGACATGTCTAAGGATGGT............... 26 1 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................................................................CCTCGCTGGACATGTCTAAGGA................... 22 0 20 0.05 1 0 1 0 0 0
..................TCGAAAGCAATGAAAGAACGGGTGTT............................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
.................ATCGAAAGCAATGAAAGAACGGG................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...........................................................................................................TCAGTATGACCGAATTCGGTTTT......................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
................TATCGAAAGCAATGAAAGAACG..................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
.................................................................................TACAGGAGAACCCTTCGTCACC.................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
.........................................................................................................CCTCAGTATGACCGAATTCGGT............................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0
....................................................................GAATATGGCGATTTACAGGAGAACCC............................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0
..............................................................TGGATTGAATATGGCGATTTACA...................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................................TGCCTCGCTGGACATGTCTAAGGAT.................. 25 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................ACTCTCTGCTGTTCACCCGGTGGCG............................................................................. 25 0 20 0.05 1 0 1 0 0 0
...................................................................TGAATATGGCGATTTACAGGAGAAC............................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................................................................AATTGCCTCGCTGGACATGTC......................... 21 0 20 0.05 1 1 0 0 0 0
..............................................................TGGATTGAATATGGCGATTTACAGGTC.................................................................................................................................................................. 27 2 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................................................CTCGCTGGACATGTCTAAGGATGGA............... 25 1 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................................................................................GGATGGGGGATGGCAGCGTTCA 22 1 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................TGCTGTTCACCCGGTGGCGTGAACATAC.................................................................... 28 0 20 0.05 1 1 0 0 0 0
...........................................................................................................TCAGTATGACCGAATTCGGTTTTGGA...................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
...................................................................TGAATATGGCGATTTACAGGAGAACCCTT........................................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0
...............................................................................TTTACAGGAGAACCCTTCGTCACCCTC................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
...................................................................................................CACCCTCCTCAGTATGACCGAATTCGG............................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
..........................................................................................................CTCAGTATGACCGAATTCGGTTTTGGT...................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................................................................CCTCGCTGGACATGTCTAAG..................... 20 0 20 0.05 1 0 1 0 0 0
...........TATATTATCGAAAGCAATGAAAGAACG..................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
................................................................................TTACAGGAGAACCCTTCGCCACCCT.................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................AAAACCCTACCCCTCACTCTCTGCTGTTC........................................................................................ 29 0 20 0.05 1 1 0 0 0 0
....................................................................................................ACCCTCCTCAGTATGACCGAATTC............................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................CACTCTCTGCTGTTCACCCGGTGGCGTG........................................................................... 28 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................ACCCTACCCCTCACTCTCTGCTGTT......................................................................................... 25 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................................GACATGTCTAAGGATGGGGG............. 20 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................TGCAACAAGTTGCAATTGCCTCGC................................... 24 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................TGCAACAGTTTGCAATTGCCTCGCTG................................. 26 2 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................TTGCAATTGCCTCGCTGGACATGT.......................... 24 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................TCACTCTCTGCTGTTCACCCGG.................................................................................. 22 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................TCGCTGGACATGTCTAAGGATGGGGC............. 26 1 20 0.05 1 1 0 0 0 0
...................................................................TGAATATGGCGATTTACGGGAGAACC.............................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0
............ATATTATCGAAAGCAATGAAAGAACG..................................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
............................................................................................................CAGTATGACCGAATTCGGTTTTGGAAAA................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
...........................................................TACTGGATTGAATATGGCGATT.......................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
............ATATTATCGAAAGCAATGAAAGAAC...................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................TGGACATGTCTAAGGATGG................ 19 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................................AGGATGGGGGATGGCAGCGTT.. 21 0 20 0.05 1 0 0 0 1 0
.........................................................................TGGCGATTTACAGGAGAACCCTTCGTC....................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.................................................................................................................TGACCGAATTCGATTTTGGAAAAAACCC.............................................................................................................. 28 1 20 0.05 1 1 0 0 0 0
.........................................................................................AACCCTTCGTCACCCTCCTCAGTATGAC...................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
...................................................................TGAATATGGCGATTTACAGGAGAACCCT............................................................................................................................................................ 28 0 20 0.05 1 0 0 1 0 0
.....................................................................................................................................................ACTCTCTGCTGTTCACCCGGTGG............................................................................... 23 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................TGCAATTACCTCGCTGGACATGTC......................... 24 1 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................................................GCAATTGCCTCGCTGGACATGTCTA....................... 25 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGG.............. 21 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................ACAAGTTGCAATTGCCTCGCTGGAC.............................. 25 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................TCGCTGGACATGTCTAAGGATGGGT.............. 25 1 20 0.05 1 1 0 0 0 0
..............ATTATCTAAAGCAATGAAAGAACGGG................................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
................................................................................TTACAGGAGAACCCTTCGTCACC.................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................................GACATGTCTAAGGATGGGGGATGGC........ 25 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................................................................................TAAGGATGGGGGATGGCAGCGTTTG 25 2 20 0.05 1 0 1 0 0 0
......................................................................................................................................AAAACCCTACCCCTCACTCTCTG.............................................................................................. 23 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................CCTCGCTGGACATGTCTAAGGATAG................ 25 1 20 0.05 1 0 1 0 0 0
.......................................................................TATGGCGATTTACAGGAGAACCCT............................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
...............................................................................................TCGTCACCCTCCTCAGTATGACCG.................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................AAAAAACCCTACCCCTCACTCTC................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................TGTTCACCCGGTGGCGTGAACATACCG.................................................................. 27 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................................TTGCCTCGCTGGACATGTCTAAGGAT.................. 26 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................CTCTGCTGTTCACCCGGTGGCG............................................................................. 22 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................TGCAATTGCCTCGCTGTACATGTCTA....................... 26 1 20 0.05 1 0 1 0 0 0
................................................................................................................................................................................................................TGCCTCGCTGGACATGTCTAAGGATG................. 26 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................TCTCTGCTGTTCACCCGGTGGC.............................................................................. 22 0 20 0.05 1 1 0 0 0 0
..........................................................................GGCGATTTACAGGAGAACCCTTCG......................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
...................................................................TGAATATGGCGATTTACAGGAGAACC.............................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................TGGAAAAAACCCTACCCCTCAC.................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGATGG......... 26 0 20 0.05 1 0 0 1 0 0
............................TGAAAGAACGGGTGTTCGGGTTAGAA..................................................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................................................................TCGACATGTCTAAGGATGGGGGATG.......... 25 1 20 0.05 1 0 1 0 0 0
.........................CAATGAAAGAACGGGTGTTCGGGT.......................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................TGGAAAAAACCCTACCCCTCACTCTCTG.............................................................................................. 28 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................GCATGTCTAAGGATGGTAG............. 19 3 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................................................................GATGGGGGATGGCAGCGTTCT 21 0 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGA............ 23 0 20 0.05 1 1 0 0 0 0
..................................................................................ACAGGAGAACCCTTCGTCACCCTCC................................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 1
.................................................................................................................................................................................................GCAACAAGTTGCAATTGCCTCGCTGGA............................... 27 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................TGCTGATCACCCGGGGGCGTGAA......................................................................... 23 2 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................................TCGCTGGACATGTCTAAGGAGG................. 22 1 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................CCTCGCTGGACATTTCTAAGGATGG................ 25 1 20 0.05 1 1 0 0 0 0
..........................................................................................................CTCAGTATGACCGAATTCG.............................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0
.................................GAACGGGTGTTCGGGTTAGATG.................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

AACTTTTTTCCATATAATAGCTTTCGTTACTTTCTTGCCCACAAGCCCAATCTACGAGTATGACCTAACTTATACCGCTAAATGTCCTCTTGGGAAGCAGTGGGAGGAGTCATACTGGCTTAAGCCAAAACCTTTTTTGGGATGGGGAGTGAGAGACGACAAGTGGGCCACCGCACTTGTATGGCGTGGGGAACGTTGTTCAACGTTAACGGAGCGACCTGTACAGATTCCTACCCCCTACCGTCGCAAGA
*******************************************************************************......((((.(((..((....(((((..............)))))....))..))).))))((((((....))))))..............((((((......))))))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 M020
head
 V119
head
...........................................................................................GGGAAGCAGTGGGAGGAGTCATACT....................................................................................................................................... 25 0 20 1.50 30 30 0 0 0 0
..........................................................................................TGGGAAGCAGTGGGAGGAGTCATACT....................................................................................................................................... 26 0 20 0.80 16 0 16 0 0 0
............................................................................................................................................GATGGGGAGTGAGAGACGACAAGTG...................................................................................... 25 0 20 0.70 14 14 0 0 0 0
............................................................................................................................................GATGGGGAGTGAGAGACGACAAGT....................................................................................... 24 0 20 0.45 9 5 4 0 0 0
........................................................................................................................................................................................CGTGGGGGACGTTGTTCA................................................. 18 1 3 0.33 1 1 0 0 0 0
..........................................................TATGACCTAACTTATACCGCTAAAT........................................................................................................................................................................ 25 0 5 0.20 1 0 1 0 0 0
.......................................................................................................................................................................................GCGTGGAGAACGTAGTTCA................................................. 19 2 5 0.20 1 0 0 1 0 0
..................................................................................................AGTGGGAGGAGTCATACTGGCTT.................................................................................................................................. 23 0 20 0.15 3 0 3 0 0 0
............................................GCCCAATCCACCAGTATG............................................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 1 0
..........................................................................................................................................................GACGACAAGTGGGCCACCGCACTT......................................................................... 24 0 20 0.10 2 0 2 0 0 0
....................................................................................................................................................................................................TGTTCAACGTTAACGGAGCGACCTG.............................. 25 0 20 0.10 2 0 2 0 0 0
...........................TACTTTCTTGCCCACAAGCCCAAT........................................................................................................................................................................................................ 24 0 20 0.10 2 2 0 0 0 0
.....................................................................................................................................................................................TGGCGTGAGGAGCGTTGTG................................................... 19 3 20 0.10 2 1 0 1 0 0
............................ACTTTCTTGCCCACAAGCCCAATCT...................................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0
................................TCTTGCCCACAAGCCCAATC....................................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
.ACTTTTTTCCATATAATAGCTTTCG................................................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
......................................................................................AAATTGGGAAGCAGTGGGAGGAGTCAT.......................................................................................................................................... 27 3 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................................................................................TAGATATTCCTACCCCCTACCGTCGCAAG. 29 2 20 0.05 1 1 0 0 0 0
.................................................................................................................................................GGAGTGAGAGACGACAAGCG...................................................................................... 20 1 20 0.05 1 1 0 0 0 0
..............................................................................................................................................TGGGGAGTGAGAGACGACAAGTGGGC................................................................................... 26 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................GGAGTGAGAGACGACAAGTGGGCCAC................................................................................ 26 0 20 0.05 1 0 0 0 0 1
...............................................................................................................................................................................................................................CAGATTCCTACCCCCTACCGTCGCAAG. 27 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................................CCTGTACAGATTCCTACCCCCTACCGT....... 27 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................GGATGGGGAGTGAGAGACGACA.......................................................................................... 22 0 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................................................................GCGACCTGTACAGATTCCTACCC............... 23 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................GGGAGTGAGAGACGACAAGTGGG.................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...................GCTTTCGTTACTTTCTTGC..................................................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................AAGTGAGAGACGACAAGTG...................................................................................... 19 1 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................TGTTCAACGTTAACGGAGCGACCTGT............................. 26 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000002384:9709-9959 + dwi_267 TTGAAAAAAGGTATATTATCGAAAGCAATGAAAGAACGGGTGTTCGGGTTAGATGCTCATACTGGATTGAATATGGCGATTTACAGGAGAACCCTTCGTCACCCTCCTCAGTATGACCGAATTCGGTTTTGGAAAAAACCCTACCCCTCACTCTCTGCTGTTCACCCGGTGGCGTGAACATACCGCACCCCTTGCAACAAGTTGCAATTGC--------CTCGCTGGACATGTCTAAGGATGGGGGATGGCAGCGTTCT
droVir3 scaffold_12272:80803-80826 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----CA-----------------------------------------------------------TATATTAGGATGGGAGCCGCC--------
droKik1 scf7180000302747:25964-26052 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACGTGAACATTCTGCCCCCCTTGCAATCACTCG-GCTTGCAATAAGCCCTTACAGGACGATGGTATGGAGGGCATCAGACCGCTGCGT
droFic1 scf7180000453433:18191-18218 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------GCCTGAACATTCCGCCCCCCTTGCAAC-------------------------------------------------------------
droEle1 scf7180000490201:15096-15124 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----TGGCCTGAACATTCCGCCCCCCTTGCAA--------------------------------------------------------------
droRho1 scf7180000778294:25166-25194 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----CGGCGTAAACATTCCGCCCCCCTTGCAA--------------------------------------------------------------
droTak1 scf7180000410990:5581-5668 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----CGGCGTAAACATTCCGCCCCCCTTGCAATCGCTAG-CGTTGCAACGAAACCCCACGTGTCA--TCTAGGACTGGTTGCAGGCACCGGACA
dm3 chr2R:1255244-1255292 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCCGTAACTTGAACATTCCGCCCCCCTTGCAATCACTGG-GGTTGCAA----------------------------------------------
droSec2 scaffold_87:31640-31688 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCCGTAACTTGAACATTCCGCCCCCCTTGCAATCACTGGGGGTTGC------------------------------------------------
droYak3 v2_chr2h_random_003:279219-279303 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCCGTAACATGGACATTCCGCCCCCCTTGCAATCACTGG-GGTTGCAACATAGC---------CA-TCCTACGGTAGGCTGCAGGCACCGGACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTGAAAAAAGGTATATTATCGAAAGCAATGAAAGAACGGGTGTTCGGGTTAGATGCTCATACTGGATTGAATATGGCGATTTACAGGAGAACCCTTCGTCACCCTCCTCAGTATGACCGAATTCGGTTTTGGAAAAAACCCTACCCCTCACTCTCTGCTGTTCACCCGGTGGCGTGAACATACCGCACCCCTTGCAACAAGTTGCAATTGC--------CTCGCTGGACATGTCTAAGGATGGGGGATGGCAGCGTTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................TGGATTGAATATGGCGATTTACAGG............................................................................................................................................................................25203.95790490300
...................................................................................................................................................TCACTCTCTGCTGTTCACCCGGTGG.......................................................................................25202.5551051000
..................................................................................................................................................................................................................C--------CTCGCTGGACATGTCTAAGGATGGG...............26202.10420100320
...........................................................................................................................................................................................................................CTCGCTGGACATGTCTAAGGATGGG...............25202.0040000400
..........................................................................................................CTCAGTATGACCGAATTCGGTTT..................................................................................................................................23201.8537000370
...........................................................................................................................................................TGCTGTTCACCCGGTGGCGTGA..................................................................................22201.3527027000
..........................................................................................................................................................................................................TGCAATTGC--------CTCGCTGGACATGTCT........................25201.3527023040
...................................................................................................................................................TCACTCTCTGCTGTTCACCCGGTGGCG.....................................................................................27201.2525025000
..................................................................................................................................................................................................................C--------CTCGCTGGACATGTCTAAGGATGG................25201.2024000240
..........................................................................................................................................................................................................TGCAATTGC--------CTCGCTGGACATGTC.........................24201.1523000230
........................................................................................................TCCTCAGTATGACCGAATTCGGTTT..................................................................................................................................25200.9519018010
................................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGATG..........25200.8016001150
..........................................................................................................................................................................................................TGCAATTGC--------CTCGCTGGACATGTCTA.......................26200.7014000140
..........................................................................................................CTCAGTATGACCGAATTCGGTTTTGGA..............................................................................................................................27200.6513013000
..........................................................................................................CTCAGTATGACCGAATTCGGTTTTGGAA.............................................................................................................................28200.6012010110
..............................................................TGGATTGAATATGGCGATTTACAGGA...........................................................................................................................................................................26200.5511011000
................TATCGAAAGCAATGAAAGAACGGG...........................................................................................................................................................................................................................24200.501006130
.........................................................................TGGCGATTTACAGGAGAACCCTTCGT................................................................................................................................................................26200.40802060
............................................................................................................................................................................................................................TCGCTGGACATGTCTAAGGATGGGGG.............26200.40802060
.............................................................................................................................................TACCCCTCACTCTCTGCTGTTCACC.............................................................................................25200.40808000
..............ATTATCGAAAGCAATGAAAGAACGG............................................................................................................................................................................................................................25200.35705020
..................TCGAAAGCAATGAAAGAACGGGTGT........................................................................................................................................................................................................................25200.30600060
...........................................................................................................................................................................................................................CTCGCTGGACATGTCTAAGGATGGGG..............26200.30606000
...................................................................TGAATATGGCGATTTACAGGAGAACCC.....................................................................................................................................................................27200.30600060
..........................................................................................................................................................................................................TGCAATTGC--------CTCGCTGGACATG...........................22200.25500050
.........................................................................................................................................................................................................TTGCAATTGC--------CTCGCTGGACATGTC.........................25200.25502030
.............................................................................................................................................................................................................................CGCTGGACATGTCTAAGGATGGG...............23200.25501040
...............................................................................................................................TTTGGAAAAAACCCTACCCCTCACTCTC........................................................................................................28200.20404000
......................................................................................................................................................................................................................................TGTCTAAGGATGGGGGATGGC........21200.20400040
....................................................................GAATATGGCGATTTACAGGAGAACCCT....................................................................................................................................................................27200.20404000
.......................................................................................................................................................TCTCTGCTGTTCACCCGGTGGCGTGA..................................................................................26200.20404000
...............TTATCGAAAGCAATGAAAGAACGGGTG.........................................................................................................................................................................................................................27200.20401030
.................................................................................................................TGACCGAATTCGGTTTTGGAAAAAACCC......................................................................................................................28200.20404000
......................................................................................................................................................................................................................................TGTCTAAGGATGGGGGATGGCAGCGT...26200.20401030
............................................................................................................................................................................................................................TCGCTGGACATGTCTAAGGATGGGG..............25200.20400040
.............TATTATCGAAAGCAATGAAAGAACG.............................................................................................................................................................................................................................25200.20400040
.........................................................CATACTGGATTGAATATGGCGATT..................................................................................................................................................................................2450.20100010
................................................................................................................................................................................................................TGC--------CTCGCTGGACATGTCTAAGGATGG................27200.20400031
..........................................................................................................................................................................................................TGCAATTGC--------CTCGCTGGACATGTCTT.......................26200.15301020
..............................................................................................................................................ACCCCTCACTCTCTGCTGTTCACCCGG..........................................................................................27200.15303000
........................................................................................................................................................CTCTGCTGTTCACCCGGTGGCGTG...................................................................................24200.15303000
................................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGG.............22200.15303000
...........................................................................................................................................................................................................................CTCGCTGGACATGTCTAAGGATGG................24200.15300030
..........................................................................................................CTCAGTATGACCGAATTCGGTTTTG................................................................................................................................25200.15300030
................................................................................TTACAGGAGAACCCTTCGTCACCC...........................................................................................................................................................24200.15300030
......................................................................................................................................................................................................................................TGTCTAAGGATGGGGGATGG.........20200.15303000
...............................................................................................................................................................................................................TTGC--------CTCGCTGGACATGTCTAAGGATG.................27200.15300030
.......................................................................................................................................AAACCCTACCCCTCACTCTCTGCTG...................................................................................................25200.15303000
..............................................................................................................................................................TGTTCACCCGGTGGCGTGAA.................................................................................20200.15300030
...........................................................................................................TCAGTATGACCGAATTCGGTTT..................................................................................................................................22200.15303000
.......................................................................................................................................AAACCCTACCCCTCACTCTCTGCT....................................................................................................24200.10202000
.......................................................................................................................................................TCTCTGCTGTTCACCCGGTGGCGT....................................................................................24200.10200020
...............................................................................TTTACAGGAGAACCCTTCGTCACCCTCC........................................................................................................................................................28200.10200020
........................GCAATGAAAGAACGGGTGTTCGGG...................................................................................................................................................................................................................24200.10200020
................................................................................TTACAGGAGAACCCTTCGTCACCCT..........................................................................................................................................................25200.10202000
......................................................................................................CCTCCTCAGTATGACCGAATTCGGTTT..................................................................................................................................27200.10202000
.........................................................................TGGCGATTTACAGGAGAACCCTTCG.................................................................................................................................................................25200.10202000
.......................................................................................................................................................................................................................................GTCTAAGGATGGGGGATGGCAGCGTT..26200.10202000
.........................................................................................................................................................TCTGCTGTTCACCCGGTGGCGTGAACA...............................................................................27200.10202000
..............ATTATCGAAAGCAATGAAAGAACGGGT..........................................................................................................................................................................................................................27200.10200020
...............................................................................................TCGTCACCCTCCTCAGTATGACCGAATT........................................................................................................................................28200.10202000
..............ATTATCGAAAGCAATGAAAGAACG.............................................................................................................................................................................................................................24200.10200020
...........................................................................................................TCAGTATGACCGAATTCGGTTTTG................................................................................................................................24200.10202000
..................................................................................................TCACCCTCCTCAGTATGACCGAATTCGG.....................................................................................................................................28200.10202000
.........................................................................................................................................ACCCTACCCCTCACTCTCTGCTGTTCA...............................................................................................27200.10202000
.............................................................................................................................................................................................................................CGCTGGACATGTCTAAGGATGG................22200.10200020
................................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGAT...........24200.10202000
..........................................................................................................................TCGGTTTTGGAAAAAACCCTACCCCT...............................................................................................................26200.10202000
..............ATTATCGAAAGCAATGAAAGAACGGGTG.........................................................................................................................................................................................................................28200.10202000
...................................................................................................................................................................................................AACAAGTTGCAATTGC--------CTCGCTGGACA.............................27200.10200020
..................................................................................................................................................................................................................................GACATGTCTAAGGATGGGGGATGG.........24200.10200020
......................................................................................................................................................................................................................................TGTCTAAGGATGGGGGATGGCA.......22200.10202000
.......................................................................................................................................................................................................................................GTCTAAGGATGGGGGATGGCAGCG....24200.10202000
...............................................................................................................................................................................................................................CTGGACATGTCTAAGGATGGG...............21200.05100001
...................................................................................................................................GAAAAAACCCTACCCCTCACTCTCTG......................................................................................................26200.05101000
............................................................................................................................................................................................................................TCGCTGGACATGTCTAAGGATGGG...............24200.05101000
................................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGATC..........25200.05100010
.......................AGCAATGAAAGAACGGGTGTTCGGG...................................................................................................................................................................................................................25200.05101000
......................AAGCAATGAAAGAACGGGTGTTC......................................................................................................................................................................................................................23200.05101000
..........................................................................................................................................................................................................TGCAATTGC--------CTCGCTGGACA.............................20200.05101000
...............................................................GGATTGAATATGGCGATTTACAGGAGA.........................................................................................................................................................................27200.05101000
................................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGATGT.........26200.05101000
.........................................................................................................................................................TCTGCTGTTCACCCGGTGGCGTGAA.................................................................................25200.05101000
.............................................................................................................................................TACCCCTCACTCTCTGCTGTTC................................................................................................22200.05101000
............................................................................................................................................CTACCCCTCACTCTCTGCTGTTCAC..............................................................................................25200.05101000
................................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGATG............23200.05101000
................................................................................................................................................................................................TGCAACAAGTTGCAATTGC--------CTCGCTGGA...............................28200.05101000
.................................................................................TACAGGAGAACCCTTCGTCACCCTCCTCA.....................................................................................................................................................29200.05101000
..........................................................................................................................................CCCTACCCCTCACTCTCTGCTGTTC................................................................................................25200.05100010
......................AAGCAATGAAAGAACGGGTGT........................................................................................................................................................................................................................21200.05101000
.........................CAATGAAAGAACGGGTGTTC......................................................................................................................................................................................................................20200.05100010
............................................................................................................................................................GCTGTTCACCCGGTGGCG.....................................................................................18200.05101000
...................................................................................................................................................................................................................................ACATGTCTAAGGATGGGGGATGGC........24200.05100010
..................................................................................................................................................................................................................C--------CTCGCTGGACATGTCTAAGGATGGT...............26200.05100010
..................................................................................................................................................................................................................C--------CTCGCTGGACATGTCTAAGGA...................22200.05100010
..................TCGAAAGCAATGAAAGAACGGGTGTT.......................................................................................................................................................................................................................26200.05100010
.................ATCGAAAGCAATGAAAGAACGGG...........................................................................................................................................................................................................................23200.05101000
...........................................................................................................TCAGTATGACCGAATTCGGTTTT.................................................................................................................................23200.05101000
................TATCGAAAGCAATGAAAGAACG.............................................................................................................................................................................................................................22200.05101000
.................................................................................TACAGGAGAACCCTTCGTCACC............................................................................................................................................................22200.05101000
.........................................................................................................CCTCAGTATGACCGAATTCGGT....................................................................................................................................22200.05101000
....................................................................GAATATGGCGATTTACAGGAGAACCC.....................................................................................................................................................................26200.05100010
..............................................................TGGATTGAATATGGCGATTTACA..............................................................................................................................................................................23200.05101000
................................................................................................................................................................................................................TGC--------CTCGCTGGACATGTCTAAGGAT..................25200.05101000
.....................................................................................................................................................ACTCTCTGCTGTTCACCCGGTGGCG.....................................................................................25200.05100010
...................................................................TGAATATGGCGATTTACAGGAGAAC.......................................................................................................................................................................25200.05100010
.............................................................................................................................................................................................................AATTGC--------CTCGCTGGACATGTC.........................21200.05101000
..............................................................TGGATTGAATATGGCGATTTACAGGTC..........................................................................................................................................................................27200.05100010
...........................................................................................................................................................................................................................CTCGCTGGACATGTCTAAGGATGGA...............25200.05100010
.............................................................................................................................................................................................................................................GGATGGGGGATGGCAGCGTTCA22200.05100010
...........................................................................................................................................................TGCTGTTCACCCGGTGGCGTGAACATAC............................................................................28200.05101000
...........................................................................................................TCAGTATGACCGAATTCGGTTTTGGA..............................................................................................................................26200.05100010
...................................................................TGAATATGGCGATTTACAGGAGAACCCTT...................................................................................................................................................................29200.05101000
...............................................................................TTTACAGGAGAACCCTTCGTCACCCTC.........................................................................................................................................................27200.05101000
...................................................................................................CACCCTCCTCAGTATGACCGAATTCGG.....................................................................................................................................27200.05101000
..........................................................................................................CTCAGTATGACCGAATTCGGTTTTGGT..............................................................................................................................27200.05100010
..................................................................................................................................................................................................................C--------CTCGCTGGACATGTCTAAG.....................20200.05100010
...........TATATTATCGAAAGCAATGAAAGAACG.............................................................................................................................................................................................................................27200.05101000
......................................................................................................................................AAAACCCTACCCCTCACTCTCTGCTGTTC................................................................................................29200.05101000
....................................................................................................ACCCTCCTCAGTATGACCGAATTC.......................................................................................................................................24200.05101000
....................................................................................................................................................CACTCTCTGCTGTTCACCCGGTGGCGTG...................................................................................28200.05101000
.........................................................................................................................................ACCCTACCCCTCACTCTCTGCTGTT.................................................................................................25200.05101000
..................................................................................................................................................................................................................................GACATGTCTAAGGATGGGGG.............20200.05101000
................................................................................................................................................................................................TGCAACAAGTTGCAATTGC--------CTCGC...................................24200.05101000
.........................................................................................................................................................................................................TTGCAATTGC--------CTCGCTGGACATGT..........................24200.05100010
...................................................................................................................................................TCACTCTCTGCTGTTCACCCGG..........................................................................................22200.05101000
............................................................................................................................................................................................................................TCGCTGGACATGTCTAAGGATGGGGC.............26200.05101000
............ATATTATCGAAAGCAATGAAAGAACG.............................................................................................................................................................................................................................26200.05101000
............................................................................................................CAGTATGACCGAATTCGGTTTTGGAAAA...........................................................................................................................28200.05101000
...........................................................TACTGGATTGAATATGGCGATT..................................................................................................................................................................................22200.05100010
............ATATTATCGAAAGCAATGAAAGAAC..............................................................................................................................................................................................................................25200.05101000
................................................................................................................................................................................................................................TGGACATGTCTAAGGATGG................19200.05101000
............................................................................................................................................................................................................................................AGGATGGGGGATGGCAGCGTT..21200.05100001
.........................................................................TGGCGATTTACAGGAGAACCCTTCGTC...............................................................................................................................................................27200.05101000
.........................................................................................AACCCTTCGTCACCCTCCTCAGTATGAC..............................................................................................................................................28200.05101000
...................................................................TGAATATGGCGATTTACAGGAGAACCCT....................................................................................................................................................................28200.05100100
.....................................................................................................................................................ACTCTCTGCTGTTCACCCGGTGG.......................................................................................23200.05101000
...........................................................................................................................................................................................................GCAATTGC--------CTCGCTGGACATGTCTA.......................25200.05101000
................................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGG..............21200.05100010
....................................................................................................................................................................................................ACAAGTTGCAATTGC--------CTCGCTGGAC..............................25200.05101000
............................................................................................................................................................................................................................TCGCTGGACATGTCTAAGGATGGGT..............25200.05101000
................................................................................TTACAGGAGAACCCTTCGTCACC............................................................................................................................................................23200.05101000
..................................................................................................................................................................................................................................GACATGTCTAAGGATGGGGGATGGC........25200.05100010
..........................................................................................................................................................................................................................................TAAGGATGGGGGATGGCAGCGTTTG25200.05100010
......................................................................................................................................AAAACCCTACCCCTCACTCTCTG......................................................................................................23200.05101000
.......................................................................TATGGCGATTTACAGGAGAACCCT....................................................................................................................................................................24200.05101000
...............................................................................................TCGTCACCCTCCTCAGTATGACCG............................................................................................................................................24200.05101000
....................................................................................................................................AAAAAACCCTACCCCTCACTCTC........................................................................................................23200.05101000
..............................................................................................................................................................TGTTCACCCGGTGGCGTGAACATACCG..........................................................................27200.05101000
...............................................................................................................................................................................................................TTGC--------CTCGCTGGACATGTCTAAGGAT..................26200.05101000
........................................................................................................................................................CTCTGCTGTTCACCCGGTGGCG.....................................................................................22200.05101000
................................................................................................................................................................................................................TGC--------CTCGCTGGACATGTCTAAGGATG.................26200.05101000
.......................................................................................................................................................TCTCTGCTGTTCACCCGGTGGC......................................................................................22200.05101000
..........................................................................GGCGATTTACAGGAGAACCCTTCG.................................................................................................................................................................24200.05100010
...................................................................TGAATATGGCGATTTACAGGAGAACC......................................................................................................................................................................26200.05100010
.................................................................................................................................TGGAAAAAACCCTACCCCTCAC............................................................................................................22200.05101000
................................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGATGG.........26200.05100100
............................TGAAAGAACGGGTGTTCGGGTTAGAA.............................................................................................................................................................................................................26200.05100010
.........................CAATGAAAGAACGGGTGTTCGGGT..................................................................................................................................................................................................................24200.05101000
.................................................................................................................................TGGAAAAAACCCTACCCCTCACTCTCTG......................................................................................................28200.05101000
..............................................................................................................................................................................................................................................GATGGGGGATGGCAGCGTTCT21200.05100010
................................................................................................................................................................................................................................TGGACATGTCTAAGGATGGGGGA............23200.05101000
..................................................................................ACAGGAGAACCCTTCGTCACCCTCC........................................................................................................................................................25200.05110000
.................................................................................................................................................................................................GCAACAAGTTGCAATTGC--------CTCGCTGGA...............................27200.05101000
..........................................................................................................CTCAGTATGACCGAATTCG......................................................................................................................................19200.05101000
.................................GAACGGGTGTTCGGGTTAGATG............................................................................................................................................................................................................22200.05101000
droVir3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----CA-----------------------------------------------------------TATATTAGGATGGGAGCCGCC--------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................TATTAGGATGGGAGCCGC.........18200.153000000002000000000000000000000000000001000000000000000000000000
........................................................................................................................................................................................................................................TATTAGGATGGGAGCCGAT--------19200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................TATTAGGATGGGAGCCGCC--------19200.051000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................A-----CA-----------------------------------------------------------TATATTAGGATGGGAGCC...........21200.051000000000000000000000000000000000000000100000000000000000000000
droKik1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACGTGAACATTCTGCCCCCCTTGCAATCACTCG-GCTTGCAATAAGCCCTTACAGGACGATGGTATGGAGGGCATCAGACCGCTGCGTSizeHit CountTotal NormTotal
No Reads
droFic1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------GCCTGAACATTCCGCCCCCCTTGCAAC-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----TGGCCTGAACATTCCGCCCCCCTTGCAA--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----CGGCGTAAACATTCCGCCCCCCTTGCAA--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----CGGCGTAAACATTCCGCCCCCCTTGCAATCGCTAG-CGTTGCAACGAAACCCCACGTGTCA--TCTAGGACTGGTTGCAGGCACCGGACASizeHit CountTotal NormTotal
No Reads
dm3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCCGTAACTTGAACATTCCGCCCCCCTTGCAATCACTGG-GGTTGCAA----------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................TTCCGCCCCCCTTGCAATCACTGG-GGT...................................................27200.60120000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CATTCCGCCCCCCTTGCAATCACTGG-GGT...................................................29200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000102040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TCCGCCCCCCTTGCAATCACTGG-GGT...................................................26200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CATTCCGCCCCCCTTGCAATCACT.........................................................24200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TGAACATTCCGCCCCCCTTGCAATCAC..........................................................27200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TGAACATTCCGCCCCCCTTGCAATCACT.........................................................28200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CCGTAACTTGAACATTCCGCC........................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CATTCCGCCCCCCTTGCAATCACTGG-G.....................................................27200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................CCCCGTAACTTGAACATT.............................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CCCTTGCAATCACTGG-GGTTG.................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CATTCCGCCCCCCTTGCAATCACTGG-......................................................26200.1530000000000000000000000000000000000000000000000100000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TTGCAATCACTGG-GGTTG.................................................18200.1530000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCCTTGC................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CGCCCCCCTTGCAATCACTGG-GGT...................................................24200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................ACATTCCGCCCCCCTTGCAATCACT.........................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TTGAACATTCCGCCCCCCTTGCAATCACT.........................................................29200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCCTTG.................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TTGAACATTCCGCCCCCCTTGCAATC............................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................CCCGTAACTTGAACATTCCGCCCCCCT...................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCCTTGCAA..............................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TTCCGCCCCCCTTGCAATCACTGG-G.....................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CCCCGTAACTTGAACATTCCGCCCCCC....................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TTGAACATTCCGCCCCCCTTGCAAT.............................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TTCCGCCCCCCTTGCAATCACTGG-GG....................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CCCCGTAACTTGAACATTCCGCCCC......................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................CCCGTAACTTGAACATTCC...........................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................ACATTCCGCCCCCCTTGCAATCACTGG-G.....................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................ACCCCGTAACTTGAACATT.............................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CTTGCAATCACTGG-GGTTGCA...............................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................ACCCCGTAACTTGAACATTCCGCC........................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................CGTAACTTGAACATTCCGCCCCCCT...................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CCCCCTTGCAATCACTGG-GT....................................................20200.0510000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CTTGCAATCACTGG-GGTTGC................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCCTTGCAAT.............................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CATTCCGCCCCCCTTGCAATCAC..........................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................ACTTGAACATTCCGCCCCCCTTGCA...............................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CTTGCAATCACTGG-GGTTGCAA----------------------------------------------22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCCT...................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CTTGAACATTCCGCCCCCCTTGCAAT.............................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TCCGCCCCCCTTGCAATCACTGG-GGTTGC................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CCTTGCAATCACTGG-GGTTG.................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................ACCCCGTAACTTGAACATTC............................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TGAACATTCCGCCCCCCTTGCAATC............................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................ACATTCCGCCCCCCTTGCAA..............................................................20200.0510000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CCCCGTAACTTGAACATTCCGCCCCC.....................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................ACTTGAACATTCCGCCCCCCTTGCAA..............................................................26200.0510000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CATTCCGCCCCCCTTGCAATCACTG........................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TGAACATTCCGCCCCCCTTGCT...............................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................AACATTCCGCCCCCCTTGCAATCACTGG-......................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATTCCGCCCCCCTTGCAATCACT.........................................................23200.0510000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CCCCTTGCAATCACTGG-GGTTGC................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CTTGCAATCACTGG-GGTTG.................................................19200.0510000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................CATTCCGCCCCCCTTGCAATCACTGG-GG....................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CCCCGTAACTTGAACATTCCGCC........................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................ACTTGAACATTCCGCCCCCCTTGCAATC............................................................28200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................GCCCCCCTTGCAATCACTGG-GGTA..................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................CCCGTAACTTGAACATTCCGCCCCC.....................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATTCCGCCCCCCTTGCAATCACTGG-......................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TTCCGCCCCCCTTGCAATCACTGG-......................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSec2
------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCCGTAACTTGAACATTCCGCCCCCCTTGCAATCACTGGGGGTTGC------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCC....................................................................22203.857777000
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCCTT..................................................................24202.404848000
..........................................................................................................................................................................AACTTGAACATTCCGCCCCCCT...................................................................22200.4599000
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCCTTGCA...............................................................27200.4599000
..........................................................................................................................................................................AACTTGAACATTCCGCCCCCC....................................................................21200.1533000
.............................................................................................................................................................................TTGAACATTCCGCCCCCCTTGCAATCAC..........................................................28200.1022000
..........................................................................................................................................................................AACTTGAACATTCCGCCCCC.....................................................................20200.1022000
.......................................................................................................................................................................CGTAACTTGAACATTCCGCCCCCCT...................................................................25200.1022000
.......................................................................................................................................................................CGTAACTTGAACATTCCGCCCCCC....................................................................24200.0511000
......................................................................................................................................................................CCGTAACTTGAACATTCCGCCCCCC....................................................................25200.0511000
...........................................................................................................................................................................ACTTGAACATTCCGCCCCCCT...................................................................21200.0511000
...............................................................................................................................................................................GAACATTCCGCCCCCCTTGCAATCAC..........................................................26200.0511000
..........................................................................................................................................................................AACTTGAACATTCCGCCCCCCTTGC................................................................25200.0511000
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCCTTGCAAC.............................................................29200.0511000
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCCTTGCAA..............................................................28200.0510001
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCCTTGCAAA.............................................................29200.0511000
..........................................................................................................................................................................AACTTGAACATTCCGCCCCCCTTG.................................................................24200.0511000
...........................................................................................................................................................................ACTTGAACATTCCGCCCCCCTTG.................................................................23200.0511000
.........................................................................................................................................................................TAACTTGAACATTCCGCCCCCCT...................................................................23200.0510010
........................................................................................................................................................................GTAACTTGAACATTCCGCCCCCCTTG.................................................................26200.0511000
droYak3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCCGTAACATGGACATTCCGCCCCCCTTGCAATCACTGG-GGTTGCAACATAGC---------CA-TCCTACGGTAGGCTGCAGGCACCGGACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................TGCAACATAGC---------CA-TCCTACGGTAGGC...............2621.00202000000000
.........................................................................................................................................................................TAACATGGACATTCCGCCCCCCTTGCA...............................................................2711.00101000000000
.........................................................................................................................................................................TAACATGGACATTCCGCCCCCCTTGCAA..............................................................2811.00101000000000
.................................................................................................................................................................................................................GCAACATAGC---------CA-TCCTACGGTAGGC...............2521.00202000000000
....................................................................................................................................................................................................ATCACTGG-GGTTGCAACATAGC---------CA-TC..........................26160.06101000000000
..............................................................................................................................................................................TGGACATTCCGCCCCCCTTGCAATCACT.........................................................28200.05101000000000
....................................................................................................................................................................................TTCCGCCCCCCTTGCAATCACTGG-GGT...................................................27200.05101000000000
..................................................................................................................................................................................CATTCCGCCCCCCTTGCAATCAC..........................................................23200.05101000000000
.....................................................................................................................................................................................TCCGCCCCCCTTGCAATCACTGG-GG....................................................25200.05101000000000
..............................................................................................................................................................................TGGACATTCCGCCCCCCTTGCAATC............................................................25200.05101000000000

Generated: 05/17/2015 at 10:30 PM