ID:

dwi_2663

 Coordinate:

scf2_1100000004909:1930189-1930339 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-18.9 -18.7 -18.2

Flybase annnotation

exon [dwil_GLEANR_9680:2]; CDS [Dwil\GK25519-cds]; intron [Dwil\GK25519-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCAGCTATTTTGGGCTCAACGCCACAAACTGTAAAAGATCTTTATCAAAGTAGACTGCTCCAATTAGAAATGACGGAAAAAAGTCGAAAAAGCGAACTAAGGGCTCTAGATATTCCATTCTGGTGGGATGACGGAGACCCAGTATCATTTACTAACAGACATACATTTCTAAACCCCAATGTGGTGTCTAATAGAACTGTAGAAAATGTCCTGCGGAAAATATTCAACGACTATTATCTACCAAGCCAAG
********************************************************************************..(((((......)).)))..(((((((...((((((((....))))))))..)))).)))((((.....))))............................********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body		 V119
head
................................................................................AAAGTCGAAAAAGCGAACTAAGGGC.................................................................................................................................................. 25 0 1 7.00 7 7 0 0 0 0
......................................................................................................................................................................................................TGTAGAAAATGTCCTGCGGAAAATAT........................... 26 0 1 6.00 6 0 6 0 0 0
............................................................................................................................................................CAGACATACATTTCTAAACCCCAATG..................................................................... 26 0 1 5.00 5 5 0 0 0 0
................................................................................AAAGTCGAAAAAGCGAACTAAGGGCTC................................................................................................................................................ 27 0 1 4.00 4 4 0 0 0 0
................................................................................AAAGTCGAAAAAGCGAACTAAGGG................................................................................................................................................... 24 0 1 4.00 4 4 0 0 0 0
..........................................................................................................................................CCCAGTATCATTTACTAACAGACA......................................................................................... 24 0 1 3.00 3 3 0 0 0 0
..................................................................................................................................................................TACATTTCTAAACCCCAATGTGGT................................................................. 24 0 1 2.00 2 2 0 0 0 0
......................................................................................................................................................................................TGGTGTCTAATAGAACTGTAGAAAA............................................ 25 0 1 2.00 2 0 2 0 0 0
...................................AAGATCTTTATCAAAGTAGACTGC................................................................................................................................................................................................ 24 0 4 2.00 8 8 0 0 0 0
.....................................................................................................................................................................................GTGGTGTCTAATAGAACTGTAGAAAA............................................ 26 0 1 2.00 2 2 0 0 0 0
..................................................................................................................................................................TACATTTCTAAACCCCAATGTGGTG................................................................ 25 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................TGTCCTGCGGAAAATATTCAACGACTA................. 27 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................TATCATTTACTAACAGACATACAT.................................................................................... 24 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................................................................TGTAGAAAATGTCCTGCGGA................................. 20 0 1 1.00 1 0 1 0 0 0
................................................................................AAAGTCGAAAAAGCGAACTAAGGGCT................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0
.............................................................................................................................................................AGACATACATTTCTAAACCCCAATG..................................................................... 25 0 1 1.00 1 1 0 0 0 0
................................................................................AAAGTCGAAAAATCGAACTAAGGGC.................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
.................................................................................AAGTCGAAAAAGCGAACTAAGG.................................................................................................................................................... 22 0 2 1.00 2 2 0 0 0 0
.................................................................................................................................TGACGGAGACCCAGTATCATTTACT................................................................................................. 25 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................CAGACATACATTTCTAAACCCCAATGTGG.................................................................. 29 0 1 1.00 1 1 0 0 0 0
.....................................................................AATGACGGAAAAAAGTCGAAAAAG.............................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................................................................................GTAGAAAATGTCCTGCGGAAAATATTC......................... 27 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................TGTCATGCGGAAAATATTCAACGAC................... 25 1 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................GTGGTGTCTAAGAGAACTGTAGA............................................... 23 1 1 1.00 1 1 0 0 0 0
............................................................................................................................................................CAGACATACATTTCTAAACCCCAA....................................................................... 24 0 1 1.00 1 1 0 0 0 0
......................................................................CTGACGGAAAAAAGTCGAAAAAGCGA........................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
....................................................................................................................................................TTTACTAACAGACATACATTTCTAAACC........................................................................... 28 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................CAGTATCATTTACTAACAGACATACA..................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................TGACGGAGACCCAGTATCATTTA................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
...............................................................................AAAAGTCGAAAAAGCGAACTAAGGGCT................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0
....................................................................................................................................CGGAGACCCAGTATCATTTACTAAC.............................................................................................. 25 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................TCATTTACTAACAGACATACATT................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.................................................................................AAGTCGAAAAAGCGAACTAAGGGCTC................................................................................................................................................ 26 0 2 1.00 2 2 0 0 0 0
.......................................................................TGACGGAAAAAAGTCGAAAAAGCGA........................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
...........................................TATCAAAGTAGACTGCTCCAATTAG....................................................................................................................................................................................... 25 0 4 1.00 4 4 0 0 0 0
.............................................................................AAAAAAGTCGAAAAAGCGAACTAAGG.................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................................ACCCAGTATCATTTACTAACAGACA......................................................................................... 25 0 1 1.00 1 1 0 0 0 0
................................................................................AAAGTCGAAAAAGCGAACTAAGG.................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................GTGGTGTCTAATAGAACTGTAGA............................................... 23 0 1 1.00 1 1 0 0 0 0
..CAGCTATTTTGGGCTCAACGCCACAAA.............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................AGACCCAGTATCATTTACTAACAGACA......................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...............................................................................AAAAGTCGAAAAAGCGAACTAAGGG................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..CAGCTATTTTGGGCTCAACGCCACA................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................GTATCATTTACTAACAGACATAC...................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...........................................TATCAAAGTAGACTGCTCCAATTAGA...................................................................................................................................................................................... 26 0 4 0.75 3 3 0 0 0 0
.GCAGCTAGTTTGGCCTCAAC...................................................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
..........................................................................................AAGCGAACTAAGGGCTCTAGATATTCCA..................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
...........................................TATCAAAGTAGACTGCTCCAATTAGAA..................................................................................................................................................................................... 27 0 4 0.50 2 2 0 0 0 0
..................................................................................AGTCGAAAAAGCGAACTAAGGGC.................................................................................................................................................. 23 0 2 0.50 1 1 0 0 0 0
.......................................................................................................GCTCTAGATATTCCATTCTGGTGGGA.......................................................................................................................... 26 0 4 0.50 2 2 0 0 0 0
............................................................................................GCGAACTAAGGGCTCTAGATATT........................................................................................................................................ 23 0 2 0.50 1 0 1 0 0 0
..........................................................................................AAGCGAACTAAGGGCTCTAGATA.......................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
.................................................................................AAGTCGAAAAAGCGAACTAAGGGC.................................................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
...................................................................................................................................................................................................................................ACGACTATTATCTACCAAGCCAAG 24 0 3 0.33 1 1 0 0 0 0
..................................................................................................TAAGGGCTCTAGATATTCCATTCTGG............................................................................................................................... 26 0 3 0.33 1 0 1 0 0 0
...............................................................................................................TATTCCATTCTGGTGGGATGACGGAG.................................................................................................................. 26 0 4 0.25 1 0 1 0 0 0
...........................................TATCAAAGTAGACTGCTCCAATT......................................................................................................................................................................................... 23 0 4 0.25 1 1 0 0 0 0
........................................CTTTATCAAAGTAGACTGCTCCAATT......................................................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0
....................................AGATCTTTATCAAAGTAGACTGCT............................................................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
...................................................TAGACTGCTCCAATTAGAAATGACGGA............................................................................................................................................................................. 27 0 4 0.25 1 1 0 0 0 0
............................................ATCAAAGTAGACTGCTCCAATTAG....................................................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
.......................................................................................................................TCTGGTGGGATGACGGAGACCC.............................................................................................................. 22 0 4 0.25 1 1 0 0 0 0
............................................ATCAAAGTAGACTGCTCCAATTAGAAA.................................................................................................................................................................................... 27 0 4 0.25 1 1 0 0 0 0
.................................................................................................................TTCCATTCTGGTGGGATGACGGAGACTA.............................................................................................................. 28 2 4 0.25 1 1 0 0 0 0
...................................AAGATCTTTATCAAAGTAGACTGCTC.............................................................................................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0
.............................................TCAAAGTAGACTGCTCCAATTAGAAAA................................................................................................................................................................................... 27 1 4 0.25 1 0 1 0 0 0
........................................................................................................CTCTAGATATTCCATTCTGGTGGG........................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
...................................AAGATCTTTATCAAAGTAGACTGCTCCAA........................................................................................................................................................................................... 29 0 4 0.25 1 1 0 0 0 0
...................................AAGATCTTTATCAAAGTACACTGCTCCA............................................................................................................................................................................................ 28 1 4 0.25 1 1 0 0 0 0
.......................................TCTTTATCAAAGTAGACTGCTCCA............................................................................................................................................................................................ 24 0 4 0.25 1 1 0 0 0 0
...........................AACTGTAAAAGATCTTTATCA........................................................................................................................................................................................................... 21 0 4 0.25 1 0 0 0 0 1
........................................................................................................................................................................................................TAGAAAATGTCCTGCGGTT................................ 19 2 4 0.25 1 1 0 0 0 0
...........................................TATCAAAGTAGACTGCTCCAATTA........................................................................................................................................................................................ 24 0 4 0.25 1 1 0 0 0 0
............................................................................................................AGATATTCCATTCTGGTGGGATGA....................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
......................................................................................................GGCTCTAGATATTCCATTCTGGTGGGA.......................................................................................................................... 27 0 4 0.25 1 0 1 0 0 0
.......................................................................................................................TCTGGTGGGATGACGGAGACCCAG............................................................................................................ 24 0 4 0.25 1 1 0 0 0 0
.....................................GATCTTTATCAAAGTAGACTGCTCCA............................................................................................................................................................................................ 26 0 4 0.25 1 1 0 0 0 0
......................................ATCTTTATCAGAGTAGACTGCTC.............................................................................................................................................................................................. 23 1 4 0.25 1 1 0 0 0 0
...................................AAGATCTTTATCAAAGTAGACT.................................................................................................................................................................................................. 22 0 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................................................GCTGTAGAAAATGTCCTGAC................................... 20 3 9 0.11 1 1 0 0 0 0
.GCAGCTAGTTTGGCCTCAACA..................................................................................................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CCGTCGATAAAACCCGAGTTGCGGTGTTTGACATTTTCTAGAAATAGTTTCATCTGACGAGGTTAATCTTTACTGCCTTTTTTCAGCTTTTTCGCTTGATTCCCGAGATCTATAAGGTAAGACCACCCTACTGCCTCTGGGTCATAGTAAATGATTGTCTGTATGTAAAGATTTGGGGTTACACCACAGATTATCTTGACATCTTTTACAGGACGCCTTTTATAAGTTGCTGATAATAGATGGTTCGGTTC
*********************************************************************..(((((......)).)))..(((((((...((((((((....))))))))..)))).)))((((.....))))............................******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 V119
head
 M020
head
...................TGCGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 26 0 4 14.50 58 40 14 4 0 0
.........................................................................................................................................................................................................................TTTTATAAGTTGCTGATAATAGATGGT....... 27 0 3 10.00 30 12 15 3 0 0
....................GCGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 25 0 4 5.50 22 10 11 1 0 0
.........................................................................................................................................................................................................................TTTTATAAGTTGCTGATAATAGAT.......... 24 0 3 4.33 13 3 10 0 0 0
............................TGACATTTTCTAGAAATAGTTTCAT...................................................................................................................................................................................................... 25 0 4 4.00 16 2 14 0 0 0
.............................................AGTTTCATCTGACGAGGTTAATCTT..................................................................................................................................................................................... 25 0 4 4.00 16 6 8 0 2 0
...........................................................................................................................................GGTCATAGTAAATGATTGTCTGTATGT..................................................................................... 27 0 1 3.00 3 3 0 0 0 0
.............................................AGTTTCATCTGACGAGGTTAATCT...................................................................................................................................................................................... 24 0 4 2.25 9 3 6 0 0 0
.....................CGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 24 0 4 2.00 8 3 5 0 0 0
.................................................................................................................................ACTGCCTCTGGGTCATAGTAAATGAT................................................................................................ 26 0 1 2.00 2 2 0 0 0 0
.....................................................................................................................................................................................................GACATCTTTTACAGGACGCCTTTTAT............................ 26 0 1 2.00 2 0 2 0 0 0
....................................TCTAGAAATAGTTTCATCTGACGAGGT............................................................................................................................................................................................ 27 0 4 2.00 8 2 6 0 0 0
..................TTGCGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 27 0 4 1.75 7 7 0 0 0 0
............................................................................................................................ACCCTACTGCCTCTGGGTCATAGT....................................................................................................... 24 0 4 1.50 6 6 0 0 0 0
...........................TTGACATTTTCTAGAAATAGTTTCAT...................................................................................................................................................................................................... 26 0 4 1.50 6 1 5 0 0 0
.................GTTGCGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 28 0 4 1.50 6 6 0 0 0 0
......................GGTGTTTGACATTTTCTAGAAATAGTT.......................................................................................................................................................................................................... 27 0 4 1.25 5 1 4 0 0 0
.............................................................................................................CTATAAGGTAAGACCACCCTACTGCCT................................................................................................................... 27 0 4 1.25 5 5 0 0 0 0
............................TGACATTTTCTAGAAATAGTTTCATCT.................................................................................................................................................................................................... 27 0 4 1.25 5 4 1 0 0 0
......................................................................................................................................................................................................................GCCTTTTATAAGTTGCTGATAATAGAT.......... 27 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................CTTGACATCTTTTACAGGACGCC.................................. 23 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................CACCCTACTGCCTCTGGGTCATAGTAAAT................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................TTGGGGTTACACCACAGATTATCT....................................................... 24 0 1 1.00 1 1 0 0 0 0
.............................................AGTTTCATCTGACGAGGTTAATCTTT.................................................................................................................................................................................... 26 0 4 1.00 4 2 2 0 0 0
..................................................................................................................................................GTAAATGATTGTCTGTATGTAAAGAT............................................................................... 26 0 1 1.00 1 1 0 0 0 0
.....................................CTAGAAATAGTTTCATCTGACGAGGT............................................................................................................................................................................................ 26 0 4 1.00 4 2 2 0 0 0
....................................................................................................................................................................................................TGACATCTTTTACAGGACGCCTTTT.............................. 25 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................TTTTACAGGACGCCTTTTATAAGT........................ 24 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................................ATAGTAAATGATTGTCTGTATGTAAA.................................................................................. 26 0 1 1.00 1 0 1 0 0 0
......................GGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 23 0 4 1.00 4 2 2 0 0 0
.....................................................................................................................................................................................................................CGCCTTTTATAAGTTGCTGATAATAGAT.......... 28 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................TGACATCTTTTACAGGACGCCTTTTAT............................ 27 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................GGGTCATAGTAAATGATTGTCTGTATGT..................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.............................................AGTTTCATCTGACGAGGTT........................................................................................................................................................................................... 19 0 4 1.00 4 1 3 0 0 0
...............................................................TAATCTTTACTGCCTTTTTTCAGCTTTT................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................CCTACTGCCTCTGGGTCATAGTAAAT................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.........................................................................TGCCTTTTTTCAGCTTTTTCGCTTGATT...................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................TATCTTGACATCTTTTACAGGACGCCT................................. 27 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................CTGCCTCTGGGTCATAGTAAATGAT................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................GCCTCTGGGTCATAGTAAATGAT................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................CTTTTACAGGACGCCTTTTATAAG......................... 24 0 1 1.00 1 1 0 0 0 0
...................TGCGGTGTTTGACATTTTCTAGAAA............................................................................................................................................................................................................... 25 0 4 1.00 4 4 0 0 0 0
.CGTCGATAAAACCCGAGTTGCGGT.................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................TGCCTCTGGGTCATAGTAAATGAT................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................GGTCATAGTAAATGATTGTCTGTATG...................................................................................... 26 0 1 1.00 1 0 0 1 0 0
..........................................................................................................................................................................................................CTTTTACAGGACGCCTTTTATAAGT........................ 25 0 1 1.00 1 0 1 0 0 0
.CGTCGATAAAACCCGAGTTGCGGTGT................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................GTAAAGATTTGGGGTTACACCACAGAT............................................................ 27 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................................TTTATAAGTTGCTGATAATAGATGGT....... 26 0 3 1.00 3 3 0 0 0 0
.......................................................................................................................................................................................CCACAGATTATCTTGACATCTTTT............................................ 24 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................................TTTTATAAGTTGCTGATAATAGATGG........ 26 0 3 1.00 3 2 1 0 0 0
...........................................................................................TCGCTTGATTCCCGAGATCTATAAGGT..................................................................................................................................... 27 0 2 1.00 2 2 0 0 0 0
.........................................................CGAGGTTAATCTTTACTGCCTTTTT......................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.........................................................CGAGGTTAATCTTTACTGCCTTTTTT........................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0
.........................................................................................TTTCGCTTGATTCCCGAGATCTAT.......................................................................................................................................... 24 0 2 1.00 2 2 0 0 0 0
..........................................................................................TTCGCTTGATTCCCGAGATCTATAAGGT..................................................................................................................................... 28 0 2 1.00 2 2 0 0 0 0
...........................................................................................................................................................TGTCTGTATGTAAAGATTTGGGGT........................................................................ 24 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................GGGTCATAGTAAATGATTGTCTGTATG...................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.................................................................................................................AAGGTAAGACCACCCTACTGCCTCT................................................................................................................. 25 0 4 1.00 4 4 0 0 0 0
......................GGTGTTTGACATTTTCTAGAAATAGT........................................................................................................................................................................................................... 26 0 4 0.75 3 2 1 0 0 0
......................................................................................................................AAGACCACCCTACTGCCTCTGGGTCAT.......................................................................................................... 27 0 4 0.75 3 3 0 0 0 0
..........................................................................................................................CCACCCTACTGCCTCTGGGTCATAGT....................................................................................................... 26 0 4 0.75 3 3 0 0 0 0
...........................................................................................................................................................................................................................TTATAAGTTGCTGATAATAGATGGT....... 25 0 3 0.67 2 2 0 0 0 0
.....................................................................................................CCCGAGATCTATAAGGTAAGACCACCCT.......................................................................................................................... 28 0 3 0.67 2 2 0 0 0 0
....................................................................................................TCCCGAGATCTATAAGGTAAGACCACCCT.......................................................................................................................... 29 0 3 0.67 2 2 0 0 0 0
.......................................................................................TTTTTCGCTTGATTCCCGAGATCTAT.......................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
.............................................................................................GCTTGATTCCCGAGATCTATAAGGT..................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
............................................................................................................TCTATAAGGTAAGACCACCCTACTGCCT................................................................................................................... 28 0 4 0.50 2 2 0 0 0 0
...........................................................................................TCGCTTGATTCCCGAGATCT............................................................................................................................................ 20 0 2 0.50 1 1 0 0 0 0
.............................................................................................................CTATAAGGTAAGACCACCCTACTGCC.................................................................................................................... 26 0 4 0.50 2 2 0 0 0 0
......................................................TGACGAGGTTAATCTTTACTGCCTT............................................................................................................................................................................ 25 0 4 0.50 2 2 0 0 0 0
........................................................................................................................GACCACCCTACTGCCTCTGGGTCAT.......................................................................................................... 25 0 4 0.50 2 2 0 0 0 0
..........................................................................................................................AATCCCTACTGCCTCTGGGTCATAGT....................................................................................................... 26 3 4 0.50 2 0 0 0 0 2
.........................GTTTGACATTTTCTAGAAATAGTTT......................................................................................................................................................................................................... 25 0 4 0.50 2 1 1 0 0 0
......................................................................................................CCGAGATCTATAAGGTAAGACCACCCT.......................................................................................................................... 27 0 4 0.50 2 2 0 0 0 0
.....................................................................................................CCCGAGATCTATAAGGTAAGACCAC............................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0
.........................................................................................................................................................................................................................TTTTATAAGTTGCTGATAATAGATCT........ 26 2 3 0.33 1 0 1 0 0 0
.........................................................................................................................................................................................................................TTTTATAAGTTGCTGATAATAGATGGTT...... 28 0 3 0.33 1 0 1 0 0 0
.........................................................................................................................................................................................................................TTTTATAAGTTGCTGATAATATAT.......... 24 1 3 0.33 1 0 1 0 0 0
.........................................................................................................................................................................................................................TCTTATAAGTTGCTGATAATAGATGGT....... 27 1 3 0.33 1 1 0 0 0 0
....................................................................................................TCCCGAGATCTATAAGGTAAGACCAC............................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0
.........................................................................................................................................................................................................................TTTTATAAGTTGCTGATAATAGGTGGT....... 27 1 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................................................................AGTTGCTGATAATAGATGGT....... 20 0 3 0.33 1 0 1 0 0 0
.........................................................................................................................................................................................................................TTTTATAAGTTGCTGATAATAGATGT........ 26 1 3 0.33 1 0 1 0 0 0
............................................................................................................................................................................................................................TATAAGTTGCTGATAATAGATGGT....... 24 0 3 0.33 1 1 0 0 0 0
.........................................................................................................................................................................................................................TTTTATAAGTTGCTGATAA............... 19 0 3 0.33 1 0 1 0 0 0
..........................................................................................................................................................................................................................CTTATAAGTTGCTGATAATAGATGGT....... 26 1 3 0.33 1 1 0 0 0 0
...............................................................................................................ATAAGGTAAGACCACCCTACTGCCTCT................................................................................................................. 27 0 4 0.25 1 1 0 0 0 0
....................................TCTAGAAATAGTTTCATCTGACGAGG............................................................................................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0
.........................................................................................................................ACCACCCTACTGCCTCTGGGTCATAG........................................................................................................ 26 0 4 0.25 1 1 0 0 0 0
..........................................................................................................GATCTATAAGGTAAGACCACCCTACT....................................................................................................................... 26 0 4 0.25 1 0 1 0 0 0
.............................................AGTTTCATCTGACGAGGTTGATCT...................................................................................................................................................................................... 24 1 4 0.25 1 0 1 0 0 0
.............................................................................................................................CCCTACTGCCTCTGGGTCATAGT....................................................................................................... 23 0 4 0.25 1 1 0 0 0 0
.........................................................CGAGGTTAATCTTTACTGCCTT............................................................................................................................................................................ 22 0 4 0.25 1 1 0 0 0 0
....................................................................................................................GTAAGACCACCCTACTGCCTCTGGGT............................................................................................................. 26 0 4 0.25 1 1 0 0 0 0
.................................................................................................................AAGGTAAGACCACCCTACTGCCTC.................................................................................................................. 24 0 4 0.25 1 1 0 0 0 0
.....................................CTAGAAATAGTTTCATCTGACGAGGTT........................................................................................................................................................................................... 27 0 4 0.25 1 1 0 0 0 0
..................TAATGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 27 3 4 0.25 1 0 1 0 0 0
.........................GTTTGACATTTTCTAGAAATAGTTTCAT...................................................................................................................................................................................................... 28 0 4 0.25 1 1 0 0 0 0
...................AGCGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 26 1 4 0.25 1 0 1 0 0 0
.....................................................CTGACGAGGTTAATCTTTACTGCCT............................................................................................................................................................................. 25 0 4 0.25 1 1 0 0 0 0
..................................................................................................................AGGTAAGACCACCCTACGGCCTCT................................................................................................................. 24 1 4 0.25 1 1 0 0 0 0
.....................................................CTGACGAGGTTAATCTTTACTGCCTT............................................................................................................................................................................ 26 0 4 0.25 1 1 0 0 0 0
......................................TAGAAATAGTTTCATCTGACGAGGT............................................................................................................................................................................................ 25 0 4 0.25 1 1 0 0 0 0
...................TGCGGTGTTTGACATTTTCTAGAAATAGTT.......................................................................................................................................................................................................... 30 0 4 0.25 1 0 0 1 0 0
........................................................................................................................GACCACCCTACTGCCTCTGGGTCATAGT....................................................................................................... 28 0 4 0.25 1 1 0 0 0 0
........................................................ACGAGGTTAATCTTTACTGCCTTT........................................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
.......................................................................................................CGAGATCTATAAGGTAAGACCACCCTAC........................................................................................................................ 28 0 4 0.25 1 1 0 0 0 0
....................GCGGTGTTTGACATTTTCTAGAAATAGT........................................................................................................................................................................................................... 28 0 4 0.25 1 1 0 0 0 0
...................CGCGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 26 1 4 0.25 1 0 1 0 0 0
..........................................AATAGTTTCATCTGACGAGGTTAATCT...................................................................................................................................................................................... 27 0 4 0.25 1 1 0 0 0 0
.............................................................................................................CTATAAGGTAAGACCACCCTACTGCCTCT................................................................................................................. 29 0 4 0.25 1 1 0 0 0 0
......................................TAGAAATAGTTTCATCTGACGAGGTT........................................................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0
..................................TTTCTAGAAATAGTTTCATCTGACG................................................................................................................................................................................................ 25 0 4 0.25 1 0 1 0 0 0
...........................................................................................................................CACCCTACTGCCTCTGGGTCATAGT....................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
........................TGTTTGACATTTTCTAGAAATAGT........................................................................................................................................................................................................... 24 0 4 0.25 1 0 1 0 0 0
...............GAGTTGCGGTGTTTGACATTTTCTAG.................................................................................................................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0
.......................................................................................................................AGACCACCCTACTGCCTCTGGGTCAT.......................................................................................................... 26 0 4 0.25 1 1 0 0 0 0
.................................................................................................................AAGGTAAGACCACCCTACTGCCTCTGGGT............................................................................................................. 29 0 4 0.25 1 1 0 0 0 0
............................................................................................................................ACCCTACTGCCTCTGGGTCATAGTA...................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
......................................................................................................................GTTACCACCCTACTGCCTCTGGGTCAT.......................................................................................................... 27 3 4 0.25 1 1 0 0 0 0
.......................................AGAAATAGTTTCATCTGACGAGGTT........................................................................................................................................................................................... 25 0 4 0.25 1 0 1 0 0 0
.................GTTGCGGTGTTTGACATTTTCTAGAAA............................................................................................................................................................................................................... 27 0 4 0.25 1 1 0 0 0 0
................................................TTCATCTGACGAGGTTAATCTTTACT................................................................................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0
....................................................................................................................CATAGACCACCCTACTGCCTCTGGGTCAT.......................................................................................................... 29 3 4 0.25 1 1 0 0 0 0
.................................................................................................................AAGGTAAGACCACCCTACTGCCT................................................................................................................... 23 0 4 0.25 1 1 0 0 0 0
....................................TCTAGAAATAGTTTCATCTAACGAGGT............................................................................................................................................................................................ 27 1 4 0.25 1 0 0 0 1 0
..................ATGCGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 27 1 4 0.25 1 1 0 0 0 0
..............................................GTTTCATCTGACGAGGTTAATCT...................................................................................................................................................................................... 23 0 4 0.25 1 1 0 0 0 0
................................................TTCATCTGACGAGGTTAATCT...................................................................................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0
.................AATGCGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 28 2 4 0.25 1 0 0 1 0 0
....................GCGGCGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 25 1 4 0.25 1 1 0 0 0 0
..............................................................................................................................CCTACTGCCTCTGGGTCATAG........................................................................................................ 21 0 4 0.25 1 1 0 0 0 0
...............................................................................................................ATAAGGTAAGACCACCCTACTGCCT................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
...................TGCGGTGTTTGACATTTTCTAGAAATC............................................................................................................................................................................................................. 27 1 4 0.25 1 1 0 0 0 0
.................ATTGCGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 28 1 4 0.25 1 0 1 0 0 0
......................GGTGTTTGACATTTTCTAGAAATGGT........................................................................................................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0
..............................................................................................................................CCTACTGCCTCTGGGTCATAGT....................................................................................................... 22 0 4 0.25 1 1 0 0 0 0
..................................................................................................................AGGTAAGACCACCCTACTGCCTCTGGGT............................................................................................................. 28 0 4 0.25 1 0 1 0 0 0
..................................TTTCTAGAAATAGTTTCATCTGACGA............................................................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0
..................TTGCGGTGTTTGACATTTTCTAGA................................................................................................................................................................................................................. 24 0 4 0.25 1 1 0 0 0 0
....................................................................................................................AAAAGACCACCCTACTGCCTCTGGGTCA........................................................................................................... 28 2 4 0.25 1 1 0 0 0 0
.................GTTGCGGTGTTTGACATTTTCTAGAA................................................................................................................................................................................................................ 26 0 4 0.25 1 1 0 0 0 0
............................................................................................................................ACCCTACTGCCTCTGGGTCATGG........................................................................................................ 23 1 4 0.25 1 1 0 0 0 0
..........................TTTGACATTTTCTAGAAATAGTTTCAT...................................................................................................................................................................................................... 27 0 4 0.25 1 0 1 0 0 0
............................................................................................................................ACCCTACTGCCTCTGGGTCATAG........................................................................................................ 23 0 4 0.25 1 1 0 0 0 0
..................................................................................................................AGGTAAGACCACCCTACTGCCTCT................................................................................................................. 24 0 4 0.25 1 1 0 0 0 0
..................CTGCGGTGTTTGACATTTTCTAGAAAT.............................................................................................................................................................................................................. 27 1 4 0.25 1 0 1 0 0 0
..............CGAGTTTCGGTGGTTGAC........................................................................................................................................................................................................................... 18 2 14 0.14 2 2 0 0 0 0
..................................................................................................................AGGTAAGACTAGCCTAATGC..................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004909:1930139-1930389 + dwi_2663 GGCAGCTATTTTGGGCTCAACGCCACAAACTGTAAAAGATCTTTATCAAAGTAGACTGCTCCAATTAGAAATGACGGAAAAAAGTCGAAAAAGCGAACTAAGGGCTCTAGATATTCCATTCTGGTGGGATGACGGAGACCCAGTATCATTTACTAACAGACATACATTTCTAAACCCCAATGTGGTGTCTAATAGAACTGTAGAAAATGTCCTGCGGAAAATATTCAACGACTATTATCTACCAAGCCAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GGCAGCTATTTTGGGCTCAACGCCACAAACTGTAAAAGATCTTTATCAAAGTAGACTGCTCCAATTAGAAATGACGGAAAAAAGTCGAAAAAGCGAACTAAGGGCTCTAGATATTCCATTCTGGTGGGATGACGGAGACCCAGTATCATTTACTAACAGACATACATTTCTAAACCCCAATGTGGTGTCTAATAGAACTGTAGAAAATGTCCTGCGGAAAATATTCAACGACTATTATCTACCAAGCCAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................AAAGTCGAAAAAGCGAACTAAGGGC..................................................................................................................................................2517.00707000
......................................................................................................................................................................................................TGTAGAAAATGTCCTGCGGAAAATAT...........................2616.00600060
............................................................................................................................................................CAGACATACATTTCTAAACCCCAATG.....................................................................2615.00505000
................................................................................AAAGTCGAAAAAGCGAACTAAGGGCTC................................................................................................................................................2714.00404000
................................................................................AAAGTCGAAAAAGCGAACTAAGGG...................................................................................................................................................2414.00404000
..........................................................................................................................................CCCAGTATCATTTACTAACAGACA.........................................................................................2413.00303000
..................................................................................................................................................................TACATTTCTAAACCCCAATGTGGT.................................................................2412.00202000
......................................................................................................................................................................................TGGTGTCTAATAGAACTGTAGAAAA............................................2512.00200020
...................................AAGATCTTTATCAAAGTAGACTGC................................................................................................................................................................................................2442.00808000
.....................................................................................................................................................................................GTGGTGTCTAATAGAACTGTAGAAAA............................................2612.00202000
..................................................................................................................................................................TACATTTCTAAACCCCAATGTGGTG................................................................2511.00101000
...............................................................................................................................................................................................................TGTCCTGCGGAAAATATTCAACGACTA.................2711.00101000
...............................................................................................................................................TATCATTTACTAACAGACATACAT....................................................................................2411.00100010
......................................................................................................................................................................................................TGTAGAAAATGTCCTGCGGA.................................2011.00100010
................................................................................AAAGTCGAAAAAGCGAACTAAGGGCT.................................................................................................................................................2611.00110000
.............................................................................................................................................................AGACATACATTTCTAAACCCCAATG.....................................................................2511.00101000
.................................................................................AAGTCGAAAAAGCGAACTAAGG....................................................................................................................................................2221.00202000
.................................................................................................................................TGACGGAGACCCAGTATCATTTACT.................................................................................................2511.00101000
............................................................................................................................................................CAGACATACATTTCTAAACCCCAATGTGG..................................................................2911.00101000
.....................................................................AATGACGGAAAAAAGTCGAAAAAG..............................................................................................................................................................2411.00100010
.......................................................................................................................................................................................................GTAGAAAATGTCCTGCGGAAAATATTC.........................2711.00101000
............................................................................................................................................................CAGACATACATTTCTAAACCCCAA.......................................................................2411.00101000
....................................................................................................................................................TTTACTAACAGACATACATTTCTAAACC...........................................................................2811.00101000
............................................................................................................................................CAGTATCATTTACTAACAGACATACA.....................................................................................2611.00101000
.................................................................................................................................TGACGGAGACCCAGTATCATTTA...................................................................................................2311.00100010
...............................................................................AAAAGTCGAAAAAGCGAACTAAGGGCT.................................................................................................................................................2711.00100100
....................................................................................................................................CGGAGACCCAGTATCATTTACTAAC..............................................................................................2511.00101000
.................................................................................................................................................TCATTTACTAACAGACATACATT...................................................................................2311.00101000
.................................................................................AAGTCGAAAAAGCGAACTAAGGGCTC................................................................................................................................................2621.00202000
.......................................................................TGACGGAAAAAAGTCGAAAAAGCGA...........................................................................................................................................................2511.00100010
...........................................TATCAAAGTAGACTGCTCCAATTAG.......................................................................................................................................................................................2541.00404000
.............................................................................AAAAAAGTCGAAAAAGCGAACTAAGG....................................................................................................................................................2611.00100010
.........................................................................................................................................ACCCAGTATCATTTACTAACAGACA.........................................................................................2511.00101000
................................................................................AAAGTCGAAAAAGCGAACTAAGG....................................................................................................................................................2311.00101000
.....................................................................................................................................................................................GTGGTGTCTAATAGAACTGTAGA...............................................2311.00101000
..CAGCTATTTTGGGCTCAACGCCACAAA..............................................................................................................................................................................................................................2711.00100010
.......................................................................................................................................AGACCCAGTATCATTTACTAACAGACA.........................................................................................2711.00101000
...............................................................................AAAAGTCGAAAAAGCGAACTAAGGG...................................................................................................................................................2511.00101000
..CAGCTATTTTGGGCTCAACGCCACA................................................................................................................................................................................................................................2511.00101000
..............................................................................................................................................GTATCATTTACTAACAGACATAC......................................................................................2311.00101000
...........................................TATCAAAGTAGACTGCTCCAATTAGA......................................................................................................................................................................................2640.75303000
..........................................................................................AAGCGAACTAAGGGCTCTAGATATTCCA.....................................................................................................................................2820.50101000
...........................................TATCAAAGTAGACTGCTCCAATTAGAA.....................................................................................................................................................................................2740.50202000
..................................................................................AGTCGAAAAAGCGAACTAAGGGC..................................................................................................................................................2320.50101000
.......................................................................................................GCTCTAGATATTCCATTCTGGTGGGA..........................................................................................................................2640.50202000
............................................................................................GCGAACTAAGGGCTCTAGATATT........................................................................................................................................2320.50100010
..........................................................................................AAGCGAACTAAGGGCTCTAGATA..........................................................................................................................................2320.50101000
.................................................................................AAGTCGAAAAAGCGAACTAAGGGC..................................................................................................................................................2420.50101000
...................................................................................................................................................................................................................................ACGACTATTATCTACCAAGCCAAG2430.33101000
..................................................................................................TAAGGGCTCTAGATATTCCATTCTGG...............................................................................................................................2630.33100010
...............................................................................................................TATTCCATTCTGGTGGGATGACGGAG..................................................................................................................2640.25100010
...........................................TATCAAAGTAGACTGCTCCAATT.........................................................................................................................................................................................2340.25101000
........................................CTTTATCAAAGTAGACTGCTCCAATT.........................................................................................................................................................................................2640.25101000
....................................AGATCTTTATCAAAGTAGACTGCT...............................................................................................................................................................................................2440.25101000
...................................................TAGACTGCTCCAATTAGAAATGACGGA.............................................................................................................................................................................2740.25101000
............................................ATCAAAGTAGACTGCTCCAATTAG.......................................................................................................................................................................................2440.25101000
.......................................................................................................................TCTGGTGGGATGACGGAGACCC..............................................................................................................2240.25101000
............................................ATCAAAGTAGACTGCTCCAATTAGAAA....................................................................................................................................................................................2740.25101000
.................................................................................................................TTCCATTCTGGTGGGATGACGGAGACTA..............................................................................................................2840.25101000
...................................AAGATCTTTATCAAAGTAGACTGCTC..............................................................................................................................................................................................2640.25101000
.............................................TCAAAGTAGACTGCTCCAATTAGAAAA...................................................................................................................................................................................2740.25100010
........................................................................................................CTCTAGATATTCCATTCTGGTGGG...........................................................................................................................2440.25101000
...................................AAGATCTTTATCAAAGTAGACTGCTCCAA...........................................................................................................................................................................................2940.25101000
.......................................TCTTTATCAAAGTAGACTGCTCCA............................................................................................................................................................................................2440.25101000
...........................AACTGTAAAAGATCTTTATCA...........................................................................................................................................................................................................2140.25100001
........................................................................................................................................................................................................TAGAAAATGTCCTGCGGTT................................1940.25101000
...........................................TATCAAAGTAGACTGCTCCAATTA........................................................................................................................................................................................2440.25101000
............................................................................................................AGATATTCCATTCTGGTGGGATGA.......................................................................................................................2440.25101000
......................................................................................................GGCTCTAGATATTCCATTCTGGTGGGA..........................................................................................................................2740.25100010
.......................................................................................................................TCTGGTGGGATGACGGAGACCCAG............................................................................................................2440.25101000
.....................................GATCTTTATCAAAGTAGACTGCTCCA............................................................................................................................................................................................2640.25101000
...................................AAGATCTTTATCAAAGTAGACT..................................................................................................................................................................................................2240.25101000

Generated: 05/18/2015 at 05:01 AM