ID:

dwi_2637

 Coordinate:

scf2_1100000004908:37096-37246 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-9.5 -9.4 -9.4

Flybase annnotation

intron [Dwil\GK18732-in]; exon [dwil_GLEANR_1936:2]; CDS [Dwil\GK18732-cds]; intron [Dwil\GK18732-in]

No Repeatable elements found

mature
star
  1. scf2_1100000004945:255641-255667 -
  2. dwi_2637  scf2_1100000004908:37136-37162 +

Sense Strand Reads

------------######################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTCATATTTCAGATGCACATTCCACGTCGATTCTATTCGAACTTTCAACAGTAATTTCGTAAATTAATATTATAACAGACGTTTCCATTACCAATCCAAATTGCATAGATGTGAAGAAAAATTTTTCTATATTAACATATCGCGGAATTGGCTGTAATATTTGTATGAATTTAACATGGAAGAAGACTTTTCATTCAAATCCTCATTCAAAAGTGGACTGAAAATGTTGCAAAGCATCTTTTCCATAATTC
******************************************************************************************(((((((.....((...((((((.(((((....))))).......)))))))))).)))))..................********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020
head
 V118
embryo
 M045
female body
 V117
male body
..................................................................................................................................................ATTGGCTGTAATATTTGTATGAA.................................................................................. 23 0 1 3.00 3 3 0 0 0
............................................................................................................AAGTGAAGAAAAATTTTT............................................................................................................................. 18 1 13 1.31 17 0 17 0 0
....................................................................................................................................................................ATGAATTTAACATGGAAGAAGACTTT............................................................. 26 0 1 1.00 1 0 0 0 1
...ATATTTCAGGTGCACATTCCACGTCGA............................................................................................................................................................................................................................. 27 1 2 0.50 1 0 0 1 0
..........................................................................................CCAATCCAAATTGCATAGATGTGAAGA...................................................................................................................................... 27 0 2 0.50 1 0 1 0 0
....................................................................................................TTGCATAGATGTGAAGAAAAAT................................................................................................................................. 22 0 2 0.50 1 0 1 0 0
...................TTCCACGTCGATTCTATTCGAACT................................................................................................................................................................................................................ 24 0 2 0.50 1 0 0 1 0
.................................................................................................................................TATTAACATATCGCGGAATTGGCTG................................................................................................. 25 0 20 0.15 3 0 1 2 0
........................................................................................................................................ATATCGCGGAATTGGCTGTAAT............................................................................................. 22 0 20 0.15 3 2 0 0 1
.................................................................................................................................TATTAACATATCGCGGAATTGGCTC................................................................................................. 25 1 20 0.10 2 2 0 0 0
.................................................................................................................................TATTAACATATCGCGGAATTGGC................................................................................................... 23 0 20 0.10 2 0 0 2 0
............................................................................................................ATGTGAAGAAAATTTTTT............................................................................................................................. 18 1 18 0.06 1 0 1 0 0
...........................................................................................................................................................................TTACATGGTAGAAGACTTT............................................................. 19 2 20 0.05 1 0 1 0 0
.....................................................................................................................................AACATATCGCGGAATTGGCTG................................................................................................. 21 0 20 0.05 1 0 1 0 0
....................................................................................................................................TAACATATCGCGGAATTGGCTGTAATA............................................................................................ 27 0 20 0.05 1 1 0 0 0
......................................................................................................................................CCAGATGGCGGAATTGGCT.................................................................................................. 19 3 20 0.05 1 0 0 0 1
............................................................................................................AAGTGAAGAAAAATTTTTTT........................................................................................................................... 20 2 20 0.05 1 0 1 0 0
................................................................................................................................ATATTAACATATCGCGGAATTG..................................................................................................... 22 0 20 0.05 1 0 1 0 0
...........................................................................................................................TTTCTATATTAACATATCGCGGAAT....................................................................................................... 25 0 20 0.05 1 0 1 0 0
............................................................................................................................TTCTATATTAACATATCGCGGAATT...................................................................................................... 25 0 20 0.05 1 1 0 0 0
.................................................................................................................................TATTAACATATCGCGGAATTGGCTGT................................................................................................ 26 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

AAGTATAAAGTCTACGTGTAAGGTGCAGCTAAGATAAGCTTGAAAGTTGTCATTAAAGCATTTAATTATAATATTGTCTGCAAAGGTAATGGTTAGGTTTAACGTATCTACACTTCTTTTTAAAAAGATATAATTGTATAGCGCCTTAACCGACATTATAAACATACTTAAATTGTACCTTCTTCTGAAAAGTAAGTTTAGGAGTAAGTTTTCACCTGACTTTTACAACGTTTCGTAGAAAAGGTATTAAG
**********************************************************************************(((((((.....((...((((((.(((((....))))).......)))))))))).)))))..................****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
......................................................................................................................................TGTATAGCGCCTTAACCGACATTAT............................................................................................ 25 0 20 1.50 30 17 13
.................GTAAGGTGCAGCTAAGATAAGCTT.................................................................................................................................................................................................................. 24 0 2 0.50 1 0 1
..........................................AAAGTGGTCATTAACGCATAT............................................................................................................................................................................................ 21 3 5 0.20 1 1 0
.................................................................................................................................................................................................AAGTTTAGGTGGAAGTTTT....................................... 19 2 15 0.20 3 1 2
...........................................................................GTCTGCAAAGGTAATGGTTA............................................................................................................................................................ 20 0 8 0.13 1 1 0
....ATAAAGTCTACGTGTAAGGTGCAG............................................................................................................................................................................................................................... 24 0 8 0.13 1 1 0
..................................................................................................................................................................................................AGTTTAGGAGGAAGTTTTTA..................................... 20 2 11 0.09 1 0 1
.................................................................................................................................................................................CCTTCGTCAGAAAAGTAGG....................................................... 19 3 13 0.08 1 1 0
....................................AGCTTGAAATTTGGCATT..................................................................................................................................................................................................... 18 2 19 0.05 1 1 0
....................................AGCTTCAAATTTGTCATT..................................................................................................................................................................................................... 18 2 20 0.05 1 1 0
....................................................................................................................................ATTGTATAGCGCCCTAACCGACATTAT............................................................................................ 27 1 20 0.05 1 1 0
...................................................................................................................................ATTTGTATAGCGCCTTAACCGACAT............................................................................................... 25 1 20 0.05 1 1 0
.................................................................................................................................ATATTTGTATAGCGCCTTAACCAACAT............................................................................................... 27 2 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004908:37046-37296 + dwi_2637 TTCATATTTCAGATGCACATTCCACGTCGATTCTATTCGAACTTTCAACAGTAATTTCGTAAATTAATATTATAACAGACGTTTCCATTACCAATCCAAATTGCATAGATGTGAAGAAAAATTTTTCTATATTAACATATCGCGGAATTGGCTGTAATATTTGTATGAATTTAACATGGAAGAAGACTTTTCATTCAAATCCTCATTCAAAAGTGGACTGAAAATGTTGCAAAGCATCTTTTCCATAATTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTCATATTTCAGATGCACATTCCACGTCGATTCTATTCGAACTTTCAACAGTAATTTCGTAAATTAATATTATAACAGACGTTTCCATTACCAATCCAAATTGCATAGATGTGAAGAAAAATTTTTCTATATTAACATATCGCGGAATTGGCTGTAATATTTGTATGAATTTAACATGGAAGAAGACTTTTCATTCAAATCCTCATTCAAAAGTGGACTGAAAATGTTGCAAAGCATCTTTTCCATAATTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................ATTGGCTGTAATATTTGTATGAA..................................................................................2313.00330000
....................................................................................................................................................................ATGAATTTAACATGGAAGAAGACTTT.............................................................2611.00100100
..........................................................................................CCAATCCAAATTGCATAGATGTGAAGA......................................................................................................................................2720.50100010
....................................................................................................TTGCATAGATGTGAAGAAAAAT.................................................................................................................................2220.50100010
...................TTCCACGTCGATTCTATTCGAACT................................................................................................................................................................................................................2420.50101000
.................................................................................................................................TATTAACATATCGCGGAATTGGCTG.................................................................................................25200.15302010
........................................................................................................................................ATATCGCGGAATTGGCTGTAAT.............................................................................................22200.15320100
.................................................................................................................................TATTAACATATCGCGGAATTGGCTC.................................................................................................25200.10220000
.................................................................................................................................TATTAACATATCGCGGAATTGGC...................................................................................................23200.10202000
.....................................................................................................................................AACATATCGCGGAATTGGCTG.................................................................................................21200.05100010
....................................................................................................................................TAACATATCGCGGAATTGGCTGTAATA............................................................................................27200.05110000
................................................................................................................................ATATTAACATATCGCGGAATTG.....................................................................................................22200.05100010
...........................................................................................................................TTTCTATATTAACATATCGCGGAAT.......................................................................................................25200.05100010
............................................................................................................................TTCTATATTAACATATCGCGGAATT......................................................................................................25200.05110000
.................................................................................................................................TATTAACATATCGCGGAATTGGCTGT................................................................................................26200.05101000

Generated: 05/18/2015 at 05:00 AM