ID:

dwi_2632

Coordinate:

scf2_1100000004902:12028829-12028979 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-50.8 -50.8 -50.8 -50.5

Flybase annnotation

exon [dwil_GLEANR_11089:3]; CDS [Dwil\GK10826-cds]; intron [Dwil\GK10826-in]

Repeatable elements

NameClassFamilyStrand
(CCA)nSimple_repeatSimple_repeat+
mature
  1. scf2_1100000004902:1398018-1398042 -
  2. dwi_2632  scf2_1100000004902:12028941-12028965 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGTCCACAAGATGCAGGTGCAGGTGGAGGTGGAGGTGGTGGCGTTGGTGCTAATAACGGTGCTGGTGGTGGCGGTGGTGGTGGTGGTGGTGCTGGCAATGGCAATGGTAATGGTGCAAATGCGCTATTTACCAATGTCAGTGCCAACAATAGCGGCAATGCAGGCGATTGCATAAAATATCCGCAAGAGTTCTGATCTCAGGCTACCATCAGGCAACAACAGCAGCAGCAGACAGACGATGATCAGCAGCA
**************************************************...........(((((((..(((((.((....((..((.((((((((.(((((.((((((((((((....)))))))).)))).))))).)))))......))).))..))..)).))))).........))))..............)))**************************************************
Read size # Mismatch Hit Count Total Norm Total V117
male body
M045
female body
V119
head
M020
head
.................................GGTGGAGGCGTTGGTGCGA....................................................................................................................................................................................................... 19 2 2 1.50 3 2 1 0 0
................................................................GTGGTGGCGGTGGTGGTGGTGGTGG.................................................................................................................................................................. 25 0 2 1.00 2 0 0 2 0
.................................GGTGGAGGCGTTGGTGCGAT...................................................................................................................................................................................................... 20 3 11 0.82 9 4 5 0 0
............GCAGGTGCAGGTGGAGGTGGC.......................................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0
..................................GTGGAGGCGTTGGTGCGA....................................................................................................................................................................................................... 18 2 4 0.50 2 1 0 0 1
........AGATGCAGGTGCAGGTGGAG............................................................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0
..................................................................GGTGGCGGTGGTGGTGGTGGTGGT................................................................................................................................................................. 24 0 4 0.50 2 1 0 1 0
.................................GGTGGAGGCGTTGGTGATA....................................................................................................................................................................................................... 19 2 8 0.38 3 1 2 0 0
...............................................................GGTGGTGGCGGTGGTGGTGGTGG..................................................................................................................................................................... 23 0 3 0.33 1 0 0 1 0
.................................................................TGGTGGCGGTGGTGGTGGTGGTGGTG................................................................................................................................................................ 26 0 4 0.25 1 0 1 0 0
.......................................................................................AGTGCTGGCAAAGGCAATG................................................................................................................................................. 19 2 4 0.25 1 0 1 0 0
..................................GTGGAGGCGTTGGTGATA....................................................................................................................................................................................................... 18 2 17 0.24 4 1 3 0 0
.................................GGTGGAGGCGTTGGTGCG........................................................................................................................................................................................................ 18 2 17 0.18 3 2 1 0 0
.................................................................TGGTGGCGGTGGTGGTGGTGGT.................................................................................................................................................................... 22 0 6 0.17 1 0 0 1 0
...............................................................GGTGGTGGCGGTGGTGGTGG........................................................................................................................................................................ 20 0 11 0.09 1 0 0 1 0
...............................................................................GTGGGGGTGGTGCTGGCCA......................................................................................................................................................... 19 2 14 0.07 1 0 1 0 0
................................CGGTGGAGGCGTTGGTGCGA....................................................................................................................................................................................................... 20 3 14 0.07 1 0 1 0 0
.................................................................TGGTGGCGGTGGTGGTGGTG...................................................................................................................................................................... 20 0 14 0.07 1 0 1 0 0
.................................................................TGGGGGCGGTGGTGGTGGTGGTG................................................................................................................................................................... 23 1 15 0.07 1 0 1 0 0
........................................................................CGTGGTGGTGGTGGTGGTGCT.............................................................................................................................................................. 21 1 20 0.05 1 0 0 1 0
...............................................................GGTGGTGGCGGTGGTGGT.......................................................................................................................................................................... 18 0 20 0.05 1 0 0 1 0
.........................................................................GTGGTGGTGGTGGTGGTGCT.............................................................................................................................................................. 20 0 20 0.05 1 0 0 1 0
......................................................................GCGGTGGTGGTGGTGGTGGTG................................................................................................................................................................ 21 0 20 0.05 1 0 1 0 0
..........................................................GTGCTGGTGGTGGCGGCGGT............................................................................................................................................................................. 20 1 20 0.05 1 0 0 1 0
...................................................................................................................................................................................................................................GCACACAGTCGATGGTCAG..... 19 3 20 0.05 1 0 1 0 0

Anti-sense strand reads

CCAGGTGTTCTACGTCCACGTCCACCTCCACCTCCACCACCGCAACCACGATTATTGCCACGACCACCACCGCCACCACCACCACCACCACGACCGTTACCGTTACCATTACCACGTTTACGCGATAAATGGTTACAGTCACGGTTGTTATCGCCGTTACGTCCGCTAACGTATTTTATAGGCGTTCTCAAGACTAGAGTCCGATGGTAGTCCGTTGTTGTCGTCGTCGTCTGTCTGCTACTAGTCGTCGT
**************************************************...........(((((((..(((((.((....((..((.((((((((.(((((.((((((((((((....)))))))).)))).))))).)))))......))).))..))..)).))))).........))))..............)))**************************************************
Read size # Mismatch Hit Count Total Norm Total V117
male body
V118
embryo
M045
female body
..............................................................................................................................................................................................................................GTCGTCATCTGTCTGCCA........... 18 2 6 0.17 1 0 1 0
..CGGTGTTCTACGTGCAAGTC..................................................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0
...................................................................................................................................................................................................................................CATCTGTCTGCCACTGGTC..... 19 3 12 0.08 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004902:12028779-12029029 - dwi_2632 GGTCCACAAGATGCA---GGTGCAGGTGGAGGTGGA-----------G-GTGGT---------------------------GGCGTTG------GTGCTAATAAC---GGTGCTGG-TGGT------GGC---------------GGTG------GTGG--T-------------------------------GGTGGTGGTGCTG---GCAATGGCAATGGTAAT---GGTGCAAATGCGCTATTTACCAATGTCAGTGCCA------------ACAATAGCGGCAATGCA---GGCGATTGCATAAAATATCCGCAAGAGTTCTGATCTCAGGCTACCATCAGGCAACAACAGCAGCAG------C---------AGAC------AGACG------AT-----------------------GATCA---GCAG-------CA
droVir3 scaffold_13047:6078281-6078510 + GGCTCTCAGGATGCT---ACCGCG----------G------------------C---------------------------GGCGTCG----------------------------GTGCT------A--G--------------------------GCAGCGCCAGCGTCGGC-------------------GGCGGAGCTGGCAGCAACATTGGCGCCGGAAAC---GGACCCAATTCGCTGTTCAGCTCCGCCGCGGCGGTGGCCAATGCCAGCA---ATACCAAT------GCCGACTGCATCAAATATCCTCAAGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGGAGCAG------C---------AGCA------GCAG----------------------------------TCG-CAGCAA-------CA
droMoj3 scaffold_6540:16482523-16482767 + GGCCCTCAGGATCCG---ACCGCA----------T-----------------------CGGCAT----------------------CG----------------------------GTGCT------G--GGCAGCGTCAGCGTCGGCG------CCAAT---------------GCCAACGGCG------------GACCTGGCAGCACCATTGGCACCGGCAAC---GGTCCCAACTCGCTGTTCAGCTCCGCCGCGGCGGTGGCCAATGCCAGCA---ATACCAAT------GCCGACTGCATTAAATATCCTCAAGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCAG------CAGC------AGTC------AGAG----------------------------------CAG-TCACAG-------CA
droGri2 scaffold_14906:11423511-11423779 + GGCTCTCAGGATGCT---A---CA----------G------------------C---------------------------GGCCTCG----------------------------GTG-----------------------------------------------------CTCGGCAGCGGCAGCGCCAATGGCGGAGGTGGCAGCAATCTTGGGGCCGGCAATGCCGTCTCCAATTCGCTATTCAGCTCCGCCGCGGCGGTGGCCAATGCCAGCA---ATGCCAAT------GCCGATTGCATTAAATATCCGCAAGAGTTCTGATCTCAGGTTATCATCAGGCAGCACCAGCAGCAG------CAGCAGCAGCAGC-----------AACAGCATCAGCAGCAGCACCAACAGCAGCAACAGCTGCAGCAG-------CA
dp5 2:19719117-19719370 + GGGCCGCAGGATGCT---GTGTCCCTTGGCGGTAAT-----------G-GTAA---------------------------------TGGTGGTGGAGGTAGTGGT---GTCGTTGG-TGGT------GGT---------------GGTG------CGGGTGTGACAGGC------------------------GGCGGTGGAGGCA---GCAATAGTACCGGCAAC---GGTCCCAATTCGCTCTTCTCATCCGCTGCCAGCA------------------ACTCCAATG------CCGATTGCCTCAAGTATCCGCAAGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGGCGGAG------C---------AGGA------GGAGCAC-----------------------------AATCG---TCAT----CCGCA
droPer2 scaffold_3:2462580-2462833 + GGGCCGCAGGATGCT---GTGTCCCTTGGCGGTAAT-----------G-GTAA---------------------------------TGGTGGTGGAGGTAGTGGT---GTCGTTGG-TGGT------GGT---------------GGTG------CGGGTGTGACAGGC------------------------GGCGGTGGAGGCA---GCAATAGTACCGGCAAC---GGTCCCAATTCGCTCTTCTCATCCGCTGCCAGCA------------------ACTCCAATG------CCGATTGCCTCAAGTATCCGCAAGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGGCGGAG------C---------AGGA------GGAGCAC-----------------------------AATCG---TCAT----CCGCA
droAna3 scaffold_13340:4279315-4279556 - CAT--------CAATCCCGGCGTA---GTT------GCGGGTGCAG-----------GGGGAGGGGGTAGCGGTACAGAAG-C---CACTGGTGGAGGCGGCGGC---GGCAGCG-GTGGC------AGT---------------G-----------GCAGCGGCAGTGTCGCT-------------------GGCTGTGGCAGTCACAACATTGTCGCCGG-----------------------------CAGTCATGACCA------------------GCTCGCCAATGTCGCTGTCATGCATCCAACATACG--GCAGT-----TGCCACAACAACAATA-GCAACAGCAACAGCAA------C---------AGCA------A--TAACAAC---------------------------AACA---ACAG-------CA
droBip1 scf7180000396708:3411484-3411731 - G-A--------CAGC---AGTGC---------------GGGGGCAG-----------TGGCAGTGGCCGGAGGAG------GGCCTGG--------GCTGGG---------------------------------------------------------------------AGTGCCCAATGGGG------------------GCAGCAGCAACGGCACCGGCAGC---GGACCCAATTCCCTGTTCGCCTCCACAGCCAGCA------------------GCTCACAAGCTCCTCCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCATCTGCCGC------AGCAGCCGGAGCATGGTAATCCCGCC--------------------------CA---GGAT-CAGCGGCT
droKik1 scf7180000302639:2297866-2298122 + G-A--------CAGT---GGCGCTGTGGGC------GGTGGTTCGG--------GGGTGGGAGTGGGTGG----------------------------------------CGTGGG-AGGTGGTGGC------------------G---------------GGGCAGGAGCGCTGTCCAACGGCG------------------GCA---GCAATGGCCCCGGCAAC---GGACCCAACTCCCTGTTCGCCTCCGCGGCCTCCA------------------GCTCCCAGGCG---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCAG------CAGCGGCGACAGCA---GGATGATGATCCTGCG-----------------------GACCG---GAGC-------CA
droFic1 scf7180000453835:91933-92165 - G-A--------CGGC---GGCTCCGTGGGC------GGTGGCTCAG-----------TGGGCGTGGG-----------------------------AGTGGG--AGTGGGCGGTGG-TGGT------GGA---------------GGAG------CGGGTGGGCCAGGTGGCCTGCCCAA---------------------------------------CGGCAAC---GGGCCCAACTCCCTGTTCGCCTCCACCGCCTCCG------------------GCTCGCAGGCG---ACCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCAG------C---------AGCA------ACAGC------TA-----------------------AAGCA---GCAG-------CC
droEle1 scf7180000491278:1440576-1440800 - AGA--------CGGC---GGCGGA------------GGTGGCTCCGTGG-----GGGTGGGAGTGGGTGGTGGTGCGGGGT-----CA----------------------------GTTGC------A--------------------------------CTGACC---------GCCAACGGCG------------------GCA---GCAA------TGGCAAC---GGTCCCAACTCCCTGTTCGCCTCCACCGCCCCCG------------------GCTCCCAGGCG---ACCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCTGCAT------C---------AGCA------GCAGC------AG-----------------------CAGCA---GCAG-------CA
droRho1 scf7180000771020:428-685 + GT--CGCAGGACGGA---GGCTCCGTGGGCGTGGGTGGTGGCTCGG-----------TGGGGGTGGG-----------------------------CGTGGG--TGTG------GG-TGGTGGTGGTC---------------------------CAG---GGGCAGGTGCCCTGCCCAACGGCG------------------GCA---GCAA------TGGCAAC---GGTCCCAACTCCCTGTTCGCCTCCACCGCCTCCG------------------GCTCCCAGGCG---ACCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCAG------C------------A------GGATAACCCCACG-----------------------GATCG---CATTC-AGGATCG
droBia1 scf7180000302155:2008153-2008402 + C----GCAGGACGGT---GGCTCA---------------------G-----------TGGGGGTGGG-----------------------GGTGGGAGTGGG--AGTGGGCGTGGG-TGGA------GCA---------------GGGGCAGGTGCGGGAGGGCCGGGCTCGCTGGCCAACGGCG------------------GCA---CCAA------TGGCAAC---GGGCCCAACTCCCTGTTCGCCTCCACCGCCTCCG------------------GCTCCCAGGCA---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCGG------C------------A------GGATAACCCCGTC-----------------------GATCG---GAGC-------CA
droTak1 scf7180000415671:383921-384156 + GG---------------------------------------CTCGG-----------TGGGGGTAGGC-----------------------------GTGGG--TGTG------GG-TGGAGCAGGT------------------GGAG------CAGGAGGGCCGGGTTCGCTGCCCAACGGCG------------G---CGGTA---CCAA------TGGCAAC---GGTCCCAACTCCCTGTTCGCCTCCACCGCCTCCG------------------GCTCCCAGGCG---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGGAGCAGGAG------CCGCAG---CAGCG------GGATAACCCCGTC-----------------------GATCG---GCAT-------CA
droEug1 scf7180000409886:231849-232089 + C----GCAGGACGGT---GGCTCAGTGGGTGGT---GGTGGCTCCG-----------TGGGGGTGGGTGGTGGTG--------------------------------------------------------------------------------CAGGAGGGCCGGGTTCGCTGTCCAATGGCG------------------GCA---GCAA------CGGCAAC---GGTCCCAACTCCCTCTTCGCCTCCACCGCCTCCA------------------GTTCCCAGGCG---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAACAGCAGCAC------CAC------CAGCA------GGATGATCCCGTC-----------------------GATCG---GAAT-------CA
dm3 chr3R:2650769-2650999 - GGA--------CGGC---GGTCCAATTGGT------GGCGGCTCGG-----------TGGGAGTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGCCGGGCTCGCTGGCCAACGGTG------------------GCA---GCAA------TGGCAGC---GGTCCCAACTCTCTCTTCGCCTCCGCCGCCTCCA------------------GCTCCCAGGCT---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCATCAGCAG------C---------AGCA------GGATAACTCCATG-----------------------GATCG---GAAT-------CA
droSim2 3r:2544880-2545110 - GGA--------CGGC---GGTCCAATTGGT------GGCGGCTCGG-----------TGGGAGTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGCCGGGCTCGCTGGCCAACGGTG------------------GCA---GCAA------TGGCAGC---GGTCCCAACTCTCTCTTCGCCTCCGCCACCTCCA------------------GCTCCCAGGCT---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCATCAGCAG------C---------AGCA------GGATAACTCCATG-----------------------GATCG---GAAT-------CA
droSec2 scaffold_6:2742016-2742246 - GGA--------CGGC---GGTCAAATTGGT------GGCGGATCGG-----------TGGGAGTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGCCGGGCTCGCTGGCCAACGGTG------------------GCA---GCAA------TGGCAGC---GGTCCCAACTCTCTCTTCGCCTCCGCCGCCTCCA------------------GCTCCCAGGCT---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCATCAGCAG------C---------AGCA------GGATAACTCCATG-----------------------GATCG---GAAT-------CA
droYak3 3R:7762210-7762442 + G-A--------CGGT---GCTCCAGTGGGT------GGTGGCTCGG-----------TAGGAGTGGGTGGCGGTG--------------------------------------------------------------------------------CGG---TGCCGGGCTCGCTGGCCAACGGTG------------------GCA---GCAA------CGGCAGC---GGTCCCAACTCCCTCTTCTCCTCCGCCGCCTCCA------------------GCTCCCAGGCT---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCACCAG------CAGCAG---CAGCA------GGATAATTTCATT-----------------------GATCG---GAAT-------CA
droEre2 scaffold_4770:2900067-2900296 - G-A--------CGGT---GGCGCAGTGGGT------GGTGGCTCGG-----------TGGGAGTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGAGGACCTGGCTCGCTGACCAACGGTG------------------GCA---GCAA------TGGCAGC---GGTCCGAACTCACTCTTCGCCTCCGCCGCCTCCA------------------GCTCCCAGGCT---CCCGACTGTATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCAG------C---------AGCA------GGATAGCTCCATT-----------------------GATCG---GAAT-------CA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GGTCCACAAGATGCA---GGTGCAGGTGGAGGTGGA-----------G-GTGGT---------------------------GGCGTTG------GTGCTAATAAC---GGTGCTGG-TGGT------GGC---------------GGTG------GTGG--T-------------------------------GGTGGTGGTGCTG---GCAATGGCAATGGTAAT---GGTGCAAATGCGCTATTTACCAATGTCAGTGCCA------------ACAATAGCGGCAATGCA---GGCGATTGCATAAAATATCCGCAAGAGTTCTGATCTCAGGCTACCATCAGGCAACAACAGCAGCAG------C---------AGAC------AGACG------AT-----------------------GATCA---GCAG-------CASizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
...................................................................................................................G-TGGT------GGC---------------GGTG------GTGG--T-------------------------------GGTGGTGG...................................................................................................................................................................................................................................................2521.00200002
............GCA---GGTGCAGGTGGAGGTGGC-----------.............................................................................................................................................................................................................................................................................................................................................................................................................2120.50100100
........AGATGCA---GGTGCAGGTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100100
......................................................................................................................GGT------GGC---------------GGTG------GTGG--T-------------------------------GGTGGTGGT..................................................................................................................................................................................................................................................2440.50200101
..................................................................................................................GG-TGGT------GGC---------------GGTG------GTGG--T-------------------------------GGTGG......................................................................................................................................................................................................................................................2330.33100001
.....................................................................................................................TGGT------GGC---------------GGTG------GTGG--T-------------------------------GGTGGTGGTG.................................................................................................................................................................................................................................................2640.25101000
.....................................................................................................................TGGT------GGC---------------GGTG------GTGG--T-------------------------------GGTGGT.....................................................................................................................................................................................................................................................2260.17100001
..................................................................................................................GG-TGGT------GGC---------------GGTG------GTGG--T-------------------------------GG.........................................................................................................................................................................................................................................................20110.09100001
.....................................................................................................................TGGT------GGC---------------GGTG------GTGG--T-------------------------------GGTG.......................................................................................................................................................................................................................................................20140.07101000
..................................................................................................................GG-TGGT------GGC---------------GGTG------GTGG--T-------------------------------...........................................................................................................................................................................................................................................................18200.05100001
..................................................................................................................................................GTG------GTGG--T-------------------------------GGTGGTGGTGCT...............................................................................................................................................................................................................................................20200.05100001
................................................................................................................................GC---------------GGTG------GTGG--T-------------------------------GGTGGTGGTG.................................................................................................................................................................................................................................................21200.05101000
droVir3
GGCTCTCAGGATGCT---ACCGCG----------G------------------C---------------------------GGCGTCG----------------------------GTGCT------A--G--------------------------GCAGCGCCAGCGTCGGC-------------------GGCGGAGCTGGCAGCAACATTGGCGCCGGAAAC---GGACCCAATTCGCTGTTCAGCTCCGCCGCGGCGGTGGCCAATGCCAGCA---ATACCAAT------GCCGACTGCATCAAATATCCTCAAGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGGAGCAG------C---------AGCA------GCAG----------------------------------TCG-CAGCAA-------CASizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
......CAGGATGCT---ACCGCG----------G------------------C---------------------------GGC........................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................................................................................................................................................................GGAGCAG------C---------AGCA------GCAG----------------------------------TC.................1830.331000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGAGCAG------C---------AGC................................................................18200.102001000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................AG------C---------AGCA------GCAG----------------------------------TCG-CAGCA..........19150.071001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGGAGCAG------C---------AGCA------GCA......................................................24190.051000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGAGCAG------C---------AGCA------.........................................................19200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
GGCCCTCAGGATCCG---ACCGCA----------T-----------------------CGGCAT----------------------CG----------------------------GTGCT------G--GGCAGCGTCAGCGTCGGCG------CCAAT---------------GCCAACGGCG------------GACCTGGCAGCACCATTGGCACCGGCAAC---GGTCCCAACTCGCTGTTCAGCTCCGCCGCGGCGGTGGCCAATGCCAGCA---ATACCAAT------GCCGACTGCATTAAATATCCTCAAGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCAG------CAGC------AGTC------AGAG----------------------------------CAG-TCACAG-------CASizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
................................................................................................................................................................................CCAACGGCG------------GACCTGGCAGCACC.........................................................................................................................................................................................................................................2311.001000010
...............................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAG------CAGC------AGTC------AG.......................................................20110.091000100
droGri2
GGCTCTCAGGATGCT---A---CA----------G------------------C---------------------------GGCCTCG----------------------------GTG-----------------------------------------------------CTCGGCAGCGGCAGCGCCAATGGCGGAGGTGGCAGCAATCTTGGGGCCGGCAATGCCGTCTCCAATTCGCTATTCAGCTCCGCCGCGGCGGTGGCCAATGCCAGCA---ATGCCAAT------GCCGATTGCATTAAATATCCGCAAGAGTTCTGATCTCAGGTTATCATCAGGCAGCACCAGCAGCAG------CAGCAGCAGCAGC-----------AACAGCATCAGCAGCAGCACCAACAGCAGCAACAGCTGCAGCAG-------CASizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................AACAGCATCAGCAGCAGCA..................................19200.05110
dp5
GGGCCGCAGGATGCT---GTGTCCCTTGGCGGTAAT-----------G-GTAA---------------------------------TGGTGGTGGAGGTAGTGGT---GTCGTTGG-TGGT------GGT---------------GGTG------CGGGTGTGACAGGC------------------------GGCGGTGGAGGCA---GCAATAGTACCGGCAAC---GGTCCCAATTCGCTCTTCTCATCCGCTGCCAGCA------------------ACTCCAATG------CCGATTGCCTCAAGTATCCGCAAGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGGCGGAG------C---------AGGA------GGAGCAC-----------------------------AATCG---TCAT----CCGCASizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................GCAGGCGGAG------C---------AGGA------GGAGCAC-----------------------------.....................2211.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................AGCAGCAGGCGGAG------C---------AGG................................................................1840.2510100000000
droPer2
GGGCCGCAGGATGCT---GTGTCCCTTGGCGGTAAT-----------G-GTAA---------------------------------TGGTGGTGGAGGTAGTGGT---GTCGTTGG-TGGT------GGT---------------GGTG------CGGGTGTGACAGGC------------------------GGCGGTGGAGGCA---GCAATAGTACCGGCAAC---GGTCCCAATTCGCTCTTCTCATCCGCTGCCAGCA------------------ACTCCAATG------CCGATTGCCTCAAGTATCCGCAAGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGGCGGAG------C---------AGGA------GGAGCAC-----------------------------AATCG---TCAT----CCGCASizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
No Reads
droAna3
CAT--------CAATCCCGGCGTA---GTT------GCGGGTGCAG-----------GGGGAGGGGGTAGCGGTACAGAAG-C---CACTGGTGGAGGCGGCGGC---GGCAGCG-GTGGC------AGT---------------G-----------GCAGCGGCAGTGTCGCT-------------------GGCTGTGGCAGTCACAACATTGTCGCCGG-----------------------------CAGTCATGACCA------------------GCTCGCCAATGTCGCTGTCATGCATCCAACATACG--GCAGT-----TGCCACAACAACAATA-GCAACAGCAACAGCAA------C---------AGCA------A--TAACAAC---------------------------AACA---ACAG-------CASizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
.......................A---GTT------GCGGGTGCAG-----------GGGGAGG............................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...............................................................................................................................................................................................................CAACATTGTCGCCGG-----------------------------CAGTCA...........................................................................................................................................................................................2111.001100000
........................................................................GTACAGAAG-C---CACTGGTGGAGGCGGC......................................................................................................................................................................................................................................................................................................................................................2611.001010000
.........................................................................................................................................................................................................................................................................................GCTCGCCAATGTCGCTGTCA...............................................................................................................................................2011.001100000
CAT--------CAATCCCGGCGTA---GTT------GC......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................TGTCGCCGG-----------------------------CAGTCATGACCA------------------GC.................................................................................................................................................................2311.001100000
......................................................................................................................................................................................................................GTCGCCGG-----------------------------CAGTCATGACCA------------------GCT................................................................................................................................................................2311.001100000
......................................................................................................................................................................................................................GTCGCCGG-----------------------------CAGTCATGACCA------------------G..................................................................................................................................................................2111.001100000
.............ATCCCGGCGTA---GTT------GCGGGTGCAG-----------GG.................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
..................................................................GTAGCGGTACAGAAG-C---CACTGGT...............................................................................................................................................................................................................................................................................................................................................................2311.001000001
................................................................................................................GCG-GTGGC------AGT---------------G-----------GCAGCGGC.......................................................................................................................................................................................................................................................................................2020.501000001
...............................................................................................................AGCG-GTGGC------AGT---------------G-----------GCAGCGGCA......................................................................................................................................................................................................................................................................................2220.501000001
.............................................................................................................GCAGCG-GTGGC------AGT---------------G-----------GCAGCGGCA......................................................................................................................................................................................................................................................................................2420.501100000
.............................................................................................................GCAGCG-GTGGC------AGT---------------G-----------GCAGC..........................................................................................................................................................................................................................................................................................2020.501010000
...............................................................................................................AGCG-GTGGC------AGT---------------G-----------GCAGC..........................................................................................................................................................................................................................................................................................1820.501100000
..........................................................................................GGTGGAGGCGGCGGC---GGC.............................................................................................................................................................................................................................................................................................................................................1870.141000001
.....................GTA---GTT------GCGGGTGCAG-----------TA.................................................................................................................................................................................................................................................................................................................................................................................................1880.131100000
....................................................................................................................................................................................................................................................................................................................................................AATA-GCAACAGCAACAGCAA------C---------...................................................................21110.091010000
droBip1
G-A--------CAGC---AGTGC---------------GGGGGCAG-----------TGGCAGTGGCCGGAGGAG------GGCCTGG--------GCTGGG---------------------------------------------------------------------AGTGCCCAATGGGG------------------GCAGCAGCAACGGCACCGGCAGC---GGACCCAATTCCCTGTTCGCCTCCACAGCCAGCA------------------GCTCACAAGCTCCTCCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCATCTGCCGC------AGCAGCCGGAGCATGGTAATCCCGCC--------------------------CA---GGAT-CAGCGGCTSizeHit CountTotal NormTotal
No Reads
droKik1
G-A--------CAGT---GGCGCTGTGGGC------GGTGGTTCGG--------GGGTGGGAGTGGGTGG----------------------------------------CGTGGG-AGGTGGTGGC------------------G---------------GGGCAGGAGCGCTGTCCAACGGCG------------------GCA---GCAATGGCCCCGGCAAC---GGACCCAACTCCCTGTTCGCCTCCGCGGCCTCCA------------------GCTCCCAGGCG---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCAG------CAGCGGCGACAGCA---GGATGATGATCCTGCG-----------------------GACCG---GAGC-------CASizeHit CountTotal NormTotal
No Reads
droFic1
G-A--------CGGC---GGCTCCGTGGGC------GGTGGCTCAG-----------TGGGCGTGGG-----------------------------AGTGGG--AGTGGGCGGTGG-TGGT------GGA---------------GGAG------CGGGTGGGCCAGGTGGCCTGCCCAA---------------------------------------CGGCAAC---GGGCCCAACTCCCTGTTCGCCTCCACCGCCTCCG------------------GCTCGCAGGCG---ACCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCAG------C---------AGCA------ACAGC------TA-----------------------AAGCA---GCAG-------CCSizeHit CountTotal NormTotal
No Reads
droEle1
AGA--------CGGC---GGCGGA------------GGTGGCTCCGTGG-----GGGTGGGAGTGGGTGGTGGTGCGGGGT-----CA----------------------------GTTGC------A--------------------------------CTGACC---------GCCAACGGCG------------------GCA---GCAA------TGGCAAC---GGTCCCAACTCCCTGTTCGCCTCCACCGCCCCCG------------------GCTCCCAGGCG---ACCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCTGCAT------C---------AGCA------GCAGC------AG-----------------------CAGCA---GCAG-------CASizeHit CountTotal NormTotal
No Reads
droRho1
GT--CGCAGGACGGA---GGCTCCGTGGGCGTGGGTGGTGGCTCGG-----------TGGGGGTGGG-----------------------------CGTGGG--TGTG------GG-TGGTGGTGGTC---------------------------CAG---GGGCAGGTGCCCTGCCCAACGGCG------------------GCA---GCAA------TGGCAAC---GGTCCCAACTCCCTGTTCGCCTCCACCGCCTCCG------------------GCTCCCAGGCG---ACCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCAG------C------------A------GGATAACCCCACG-----------------------GATCG---CATTC-AGGATCGSizeHit CountTotal NormTotal
No Reads
droBia1
C----GCAGGACGGT---GGCTCA---------------------G-----------TGGGGGTGGG-----------------------GGTGGGAGTGGG--AGTGGGCGTGGG-TGGA------GCA---------------GGGGCAGGTGCGGGAGGGCCGGGCTCGCTGGCCAACGGCG------------------GCA---CCAA------TGGCAAC---GGGCCCAACTCCCTGTTCGCCTCCACCGCCTCCG------------------GCTCCCAGGCA---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCGG------C------------A------GGATAACCCCGTC-----------------------GATCG---GAGC-------CASizeHit CountTotal NormTotal
No Reads
droTak1
GG---------------------------------------CTCGG-----------TGGGGGTAGGC-----------------------------GTGGG--TGTG------GG-TGGAGCAGGT------------------GGAG------CAGGAGGGCCGGGTTCGCTGCCCAACGGCG------------G---CGGTA---CCAA------TGGCAAC---GGTCCCAACTCCCTGTTCGCCTCCACCGCCTCCG------------------GCTCCCAGGCG---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGGAGCAGGAG------CCGCAG---CAGCG------GGATAACCCCGTC-----------------------GATCG---GCAT-------CASizeHit CountTotal NormTotal
No Reads
droEug1
C----GCAGGACGGT---GGCTCAGTGGGTGGT---GGTGGCTCCG-----------TGGGGGTGGGTGGTGGTG--------------------------------------------------------------------------------CAGGAGGGCCGGGTTCGCTGTCCAATGGCG------------------GCA---GCAA------CGGCAAC---GGTCCCAACTCCCTCTTCGCCTCCACCGCCTCCA------------------GTTCCCAGGCG---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAACAGCAGCAC------CAC------CAGCA------GGATGATCCCGTC-----------------------GATCG---GAAT-------CASizeHit CountTotal NormTotal
No Reads
dm3
GGA--------CGGC---GGTCCAATTGGT------GGCGGCTCGG-----------TGGGAGTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGCCGGGCTCGCTGGCCAACGGTG------------------GCA---GCAA------TGGCAGC---GGTCCCAACTCTCTCTTCGCCTCCGCCGCCTCCA------------------GCTCCCAGGCT---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCATCAGCAG------C---------AGCA------GGATAACTCCATG-----------------------GATCG---GAAT-------CASizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGG............................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000
...............................................................TGGGTGGTGGTG--------------------------------------------------------------------------------CGGGG............................................................................................................................................................................................................................................................................................1714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGG.........................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010020000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGG...........................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...............................................................TGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGG...........................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGA...........................................................................................................................................................................................................................................................................................1922.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGT.........................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGG..........................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................GT------GGCGGCTCGG-----------TGGGAGTGGGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................GTGGTG--------------------------------------------------------------------------------CGGGGGGGCCGGG....................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................GGCTCGG-----------TGGGAGTGGGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................TGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGT...........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGT..........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................GGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGC........................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
....................................GGCGGCTCGG-----------TGGGAGTGGGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................TGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGA.........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGCCGGG....................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.....................................GCGGCTCGG-----------TGGGAGTGGGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................GGAGTGGGTGGTGGTG--------------------------------------------------------------------------------C................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AATTGGT------GGCGGCTCGG-----------TGGGA..............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................................................................................CATCAGGCAGCAGCATCAGCA....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGCC.......................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................TGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGA..........................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................A------GGATAACTCCATG-----------------------GATCG---GA...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...............................................................TGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGG.........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGC...........................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGA.........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................GTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGC........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGA..........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AGCA------GGATAACTCCATG-----------------------GATCG---GA...........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GGATAACTCCATG-----------------------GATCG---GA...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................GT------GGCGGCTCGG-----------TGGGAGTGGG.........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................TGGCAGC---GGTCCCAACTCTCT.........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGCCGGGC...................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.............................................G-----------TGGGAGTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGG...........................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................TGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGA...........................................................................................................................................................................................................................................................................................1840.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TGGGAGTGGGTGGTGGTG--------------------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..................................................................GTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGT........................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGA............................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGCT..........................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGCT..........................................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGA--------CGGC---GGTCCAATTGGT------GGCGGCTCGG-----------TGGGAGTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGCCGGGCTCGCTGGCCAACGGTG------------------GCA---GCAA------TGGCAGC---GGTCCCAACTCTCTCTTCGCCTCCGCCACCTCCA------------------GCTCCCAGGCT---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCATCAGCAG------C---------AGCA------GGATAACTCCATG-----------------------GATCG---GAAT-------CASizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................CAGGTTATCATCAGGCAGCAG............................................................................................2121.00200002000000000000
..................................................................................................................................................................................................................................................................................................................................TTCTGATCTCAGGTTATCATC.....................................................................................................2121.00200002000000000000
..................................................................................................................................................................................................................CAA------TGGCAGC---GGTCCCAACTC............................................................................................................................................................................................................2121.00200000000000002000
.........................................................................................................................................................................................................................................................................................................................................................................................AGCA------GGATAACTCCATG-----------------------GA...................1921.00200002000000000000
.............................................................................................................................................................................................................A---GCAA------TGGCAGC---GGTCCCA................................................................................................................................................................................................................1921.00200002000000000000
...............................................................................................................................................................................................................................................................................................................CATCAAGTATCCGCAGGAGTTC.......................................................................................................................2221.00200002000000000000
............................................................................................................................................................................................................................................................................................................................................AGGTTATCATCAGGCAGCA.............................................................................................1921.00200002000000000000
.................................................................................................................................................................................................................................................................................................................................................ATCATCAGGCAGCAGCATCA.......................................................................................2021.00200002000000000000
..........................................................................................................................................................................................................................................................................................................................................TCAGGTTATCATCAGGCAGCA.............................................................................................2121.00200000000000002000
.............................................................................................................................................................................................................................GCAGC---GGTCCCAACTCTCTCT.......................................................................................................................................................................................................2121.00200002000000000000
.............................................................................................................................................................................................................A---GCAA------TGGCAGC---GGTCCCAAC..............................................................................................................................................................................................................2121.00200002000000000000
..........................................................................................................................................................................................................................................................................................................................CGCAGGAGTTCTGATCTCAG..............................................................................................................2020.50100000000000001000
............................................................................................................................................................................................................................................................................................................................................AGGTTATCATCAGGCAGCAGTT..........................................................................................2220.50100000000000001000
.................................................................................................................................................................................CAACGGTG------------------GCA---GCAA------TGGCAT...........................................................................................................................................................................................................................2120.50100000000000001000
........................................................................................................................................................................................................................................................................................................................................TCTCAGGTTATCATCAGGC.................................................................................................1920.50100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GCA------GGATAACTCCATG-----------------------GATCG---T............2220.50100000000000001000
.............................................................................................................................................................................................................................GCAGC---GGTCCCAACTCTCTCTT......................................................................................................................................................................................................2220.50100000000000001000
..................................................................................................................................................................................................................................................................................................................CAAGTATCCGCAGGAGTTCTG.....................................................................................................................2120.50100000000000001000
.................................................................................................................................................................................CAACGGTG------------------GCA---GCAA------TGGCAG...........................................................................................................................................................................................................................2120.50100000000000001000
.............................................................................................................................................................................................................................................................GCCACCTCCA------------------GCTCC..............................................................................................................................................................1570.14100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................AGCAGCATCAGCAG------C---------AGC................................................................18200.05100000000001000000
droSec2
GGA--------CGGC---GGTCAAATTGGT------GGCGGATCGG-----------TGGGAGTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGGGGGCCGGGCTCGCTGGCCAACGGTG------------------GCA---GCAA------TGGCAGC---GGTCCCAACTCTCTCTTCGCCTCCGCCGCCTCCA------------------GCTCCCAGGCT---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCATCAGCAG------C---------AGCA------GGATAACTCCATG-----------------------GATCG---GAAT-------CASizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
.............................................................................................................................................................................................................A---GCAA------TGGCAGC---GGTCCCAA...............................................................................................................................................................................................................2020.5010001
droYak3
G-A--------CGGT---GCTCCAGTGGGT------GGTGGCTCGG-----------TAGGAGTGGGTGGCGGTG--------------------------------------------------------------------------------CGG---TGCCGGGCTCGCTGGCCAACGGTG------------------GCA---GCAA------CGGCAGC---GGTCCCAACTCCCTCTTCTCCTCCGCCGCCTCCA------------------GCTCCCAGGCT---CCCGACTGCATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCACCAG------CAGCAG---CAGCA------GGATAATTTCATT-----------------------GATCG---GAAT-------CASizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................AGCAGCACCAG------CAGCAG---CAGCA------GG.......................................................2411.00100010000000
................................................................................................................................................................................................................................................................................................................................................................CAGCACCAG------CAGCAG---CAGC................................................................19200.05101000000000
droEre2
G-A--------CGGT---GGCGCAGTGGGT------GGTGGCTCGG-----------TGGGAGTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGAGGACCTGGCTCGCTGACCAACGGTG------------------GCA---GCAA------TGGCAGC---GGTCCGAACTCACTCTTCGCCTCCGCCGCCTCCA------------------GCTCCCAGGCT---CCCGACTGTATCAAGTATCCGCAGGAGTTCTGATCTCAGGTTATCATCAGGCAGCAGCAGCAGCAG------C---------AGCA------GGATAGCTCCATT-----------------------GATCG---GAAT-------CASizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
..............................................................GTGGGTGGTGGTG--------------------------------------------------------------------------------CGGGAGGAC........................................................................................................................................................................................................................................................................................2211.0010100000

Generated: 05/18/2015 at 05:01 AM