ID:

dwi_256

 Coordinate:

scf2_1100000001990:15417-15567 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.8 -26.8 -26.8

Flybase annnotation

exon [dwil_GLEANR_2877:1]; CDS [Dwil\GK20218-cds]; intron [Dwil\GK20218-in]

No Repeatable elements found

mature
  1. dwi_256  scf2_1100000001990:15428-15445 -
  2. scf2_1100000004511:3704266-3704283 +
  3. scf2_1100000004590:1184371-1184388 +
  4. scf2_1100000004902:10775431-10775448 -
star
  1. scf2_1100000001164:4790-4812 -
  2. scf2_1100000001171:774-796 -
  3. scf2_1100000007953:1158-1180 -
  4. scf2_1100000001287:4933-4955 -
  5. scf2_1100000001545:3785-3807 -
  6. scf2_1100000003240:1064-1086 -
  7. scf2_1100000011007:654-676 +
  8. dwi_256  scf2_1100000001990:15542-15564 -
  9. scf2_1100000006280:497-519 +
  10. scf2_1100000004519:46169-46191 +
  11. scf2_1100000000908:218-240 +
  12. scf2_1100000004358:9494-9516 -
  13. scf2_1100000004389:41613-41635 -
  14. scf2_1100000004561:10658-10680 +
  15. scf2_1100000004649:51684-51706 +
  16. scf2_1100000004689:12631-12653 -
  17. scf2_1100000004865:42902-42924 -
  18. scf2_1100000004947:1206444-1206466 -
  19. scf2_1100000004928:60847-60869 -
  20. scf2_1100000004961:4414406-4414428 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAAAGATCAACATCGAACCCAGTGAGCGGAATGGAGTCCATGAATCTATGGTAGGCCGTACTACTGGGAGCTATGCCTCGATCGCGGAGCGTATAACTAAATGGAAATATCTATTTCATAGAGCAAATAGAGACTCGAGCCGCGACTTACCGTTTGAGTTTGGAGACACTGCCTCCGATGATGATGATGATCTTATTGACCGGACGGGCCGAAAGCTGGTGGCAAACCAGCGGGTATCCGGAGATGACATG
*****************************************************(((.(((((......)).))))))((.(((((((((.(((................(((((((........)))))))(((((((((...........))))))))).........)))))))).))))))......************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
............................................................................................................................................................................CTCCGATGATGATGATGA............................................................. 18 0 4 0.25 1 0 1 0
..........................................................................................................................................................TGAGTTTGGAGACACTGCCTCCGA......................................................................... 24 0 20 0.20 4 4 0 0
..........................................................................................................................................................TGAGTTTGGAGACACTGCCTCCG.......................................................................... 23 0 20 0.15 3 3 0 0
.....................................................GGCCGTACTACTGGGAGCTATGC............................................................................................................................................................................... 23 0 20 0.10 2 0 2 0
................................................................................................................................................................................................TTATTGACCGGACGGGCCGAAAG.................................... 23 0 14 0.07 1 1 0 0
...................................................................................................................TCATAGAGCAAATAGAGACTCGAG................................................................................................................ 24 0 15 0.07 1 1 0 0
...................................................................................................................TCATAGAGCAAATAGAGACTCGAGC............................................................................................................... 25 0 15 0.07 1 1 0 0
.........................................................................................................................................................TTGAGTTTGGAGACACTGCCTCCGA......................................................................... 25 0 16 0.06 1 0 1 0
...................................................................................................................TCATAGAGCAAATAGAGACTCGA................................................................................................................. 23 0 16 0.06 1 1 0 0
......TCAACATCGAACCCAGTGAGCGGAA............................................................................................................................................................................................................................ 25 0 17 0.06 1 1 0 0
..........................................................................................................................................................TGAGTTTGGAGACACTGCCTCCGATGAA..................................................................... 28 1 19 0.05 1 1 0 0
...........................................................................................................................................................GAGTTTGGAGACACTGCCTCCGATG....................................................................... 25 0 19 0.05 1 1 0 0
....................................TTCATGAATCTATGGTAGGCCGTACTAC........................................................................................................................................................................................... 28 1 19 0.05 1 1 0 0
...................................................TAGGCCGTACTACTGGGAGCT................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0
....................................TCCATGAATCTATGGTAGGCCGTAC.............................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0
.................................................................................................................................................................................................TATTGACCGGACGGGCCGAAAGCTG................................. 25 0 20 0.05 1 1 0 0
.......................................ATGAATCTATGGTAGGCCGTACTA............................................................................................................................................................................................ 24 0 20 0.05 1 0 0 1
..........................................................................................................................................................................................................................GTGGCAGACCAGGGGGTAGC............. 20 3 20 0.05 1 1 0 0
..................................................................GGAGCTATGCCTCGATCGCGGT................................................................................................................................................................... 22 1 20 0.05 1 1 0 0
.................................................................................................................................................................................................TATTGACCGGACGGGCCGAAAGCTGG................................ 26 0 20 0.05 1 1 0 0
....................................................AGGCCGTACTACTGGGAGCTA.................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0
...........................................................................................................................................................................................................ACGGGCCGAAAGCTGGTGGCAA.......................... 22 0 20 0.05 1 1 0 0
...............................................................CTGGGAGCTATGCCTCGATCGC...................................................................................................................................................................... 22 0 20 0.05 1 1 0 0
.....................................................GGCCGTACTACTGGGAGCTATGCCT............................................................................................................................................................................. 25 0 20 0.05 1 1 0 0
..........................................AATCTATGGTAGGCCGTACT............................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0
..........................................................................................................................................................................................................GACGGGCCGAAAGCTGGTGG............................. 20 0 20 0.05 1 0 1 0
..............................................................................................................................................................................................................GGACGAACGCTGGTGGCA........................... 18 2 20 0.05 1 1 0 0
...........................................ATCTATGGTAGGCCGTACTACTGGG....................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0
..................................................GTAGGCCGTACTACTGGGAGCTATGCC.............................................................................................................................................................................. 27 0 20 0.05 1 1 0 0
...............................................................CTGGGAGCTATGCCTCGATCGCGG.................................................................................................................................................................... 24 0 20 0.05 1 0 1 0
...........................................................ACTACTGGGAGCTATGCCTCGA.......................................................................................................................................................................... 22 0 20 0.05 1 0 1 0
...............................................................................................................................................................................CGAAGATGCTGATGACCTT......................................................... 19 3 20 0.05 1 0 1 0

Anti-sense strand reads

GTTTCTAGTTGTAGCTTGGGTCACTCGCCTTACCTCAGGTACTTAGATACCATCCGGCATGATGACCCTCGATACGGAGCTAGCGCCTCGCATATTGATTTACCTTTATAGATAAAGTATCTCGTTTATCTCTGAGCTCGGCGCTGAATGGCAAACTCAAACCTCTGTGACGGAGGCTACTACTACTACTAGAATAACTGGCCTGCCCGGCTTTCGACCACCGTTTGGTCGCCCATAGGCCTCTACTGTAC
*************************************************************(((.(((((......)).))))))((.(((((((((.(((................(((((((........)))))))(((((((((...........))))))))).........)))))))).))))))......***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 M020
head
 V119
head
.......................................................GGCATGATGACCCTCGATACGGAGCT.......................................................................................................................................................................... 26 0 20 1.35 27 5 22 0 0 0
................................................ACCATCCGGCATGATGACCCTCGAT.................................................................................................................................................................................. 25 0 20 1.20 24 18 6 0 0 0
...........................................TAGATACCATCCGGCATGATGACCCT...................................................................................................................................................................................... 26 0 20 0.85 17 15 2 0 0 0
..........................................................................................................................................................................................................................CACCGTTTGGTCGCCCATAGGCCTCT....... 26 0 20 0.75 15 12 3 0 0 0
.......................................................................................................................................................................................................GGCCTGCCCGGCTTTCGACCACCGT........................... 25 0 20 0.75 15 9 6 0 0 0
......................................................................................................................................................................................................TGGCCTGCCCGGCTTTCGACCACCGT........................... 26 0 20 0.60 12 12 0 0 0 0
..............................................................................................................................................................................................................................GTTTGGTCGCCCATAGGCCTCTACT.... 25 0 20 0.45 9 6 2 1 0 0
..................................TCAGGTACTTAGATACCATCCGGCAT............................................................................................................................................................................................... 26 0 20 0.45 9 7 2 0 0 0
.............................................................................................................................................................................................................................CGTTTGGTCGCCCATAGGCCTCTACT.... 26 0 20 0.40 8 4 4 0 0 0
......................................................CGGCATGATGACCCTCGATACGGAGCT.......................................................................................................................................................................... 27 0 20 0.40 8 1 7 0 0 0
......AGTTGTAGCTTGGGTCACTCGCCTT............................................................................................................................................................................................................................ 25 0 17 0.35 6 4 2 0 0 0
.....................................GGTACTTAGATACCATCCGGCATGAT............................................................................................................................................................................................ 26 0 20 0.30 6 6 0 0 0 0
...........................................................................................................................................................................................................................ACCGTTTGGTCGCCCATAGGCCTCTACT.... 28 0 20 0.30 6 4 2 0 0 0
..................................TCAAGTACTTAGATACCATCCGGCATGAT............................................................................................................................................................................................ 29 1 19 0.26 5 5 0 0 0 0
...................................CAAGTACTTAGATACCATCCGGCATGAT............................................................................................................................................................................................ 28 1 19 0.26 5 4 0 0 1 0
...........................................................................................................................................GGCGCTGAATGGCAAACTCAAACCT....................................................................................... 25 0 12 0.25 3 1 2 0 0 0
..........................................................................................................................................................................................................................CACCGTTTGGTCGCCCATAGGCCTCTACT.... 29 0 20 0.25 5 5 0 0 0 0
..................................TCAAGTACTTAGATACCATCCGGCAT............................................................................................................................................................................................... 26 1 20 0.25 5 5 0 0 0 0
................................................................................................................................................................................................................................TTGGTCGCCCATAGGCCTCTACTGT.. 25 0 20 0.25 5 3 2 0 0 0
................................................................................................................................................................................................................................TTGGTCGCCCATAGGCCTCTACT.... 23 0 20 0.25 5 1 4 0 0 0
...........................................TAGATACCATCCGGCATGATGACCC....................................................................................................................................................................................... 25 0 20 0.25 5 5 0 0 0 0
......................................GTACTTAGATACCATCCGGCATGAT............................................................................................................................................................................................ 25 0 20 0.20 4 4 0 0 0 0
............................................AGATACCATCCGGCATGATGACCCT...................................................................................................................................................................................... 25 0 20 0.20 4 4 0 0 0 0
...............................................TACCATCCGGCATGATGACCCTCGAT.................................................................................................................................................................................. 26 0 20 0.20 4 3 1 0 0 0
.......GTTGTAGCTTGGGTCACTCGCCTT............................................................................................................................................................................................................................ 24 0 17 0.18 3 0 3 0 0 0
.........................................................................................................................................................................................................................CCACCGTTTGGTCGCCCATAGGCCTCT....... 27 0 20 0.15 3 1 2 0 0 0
.....................................................CCGGCATGATGACCCTCGATACGGAGCT.......................................................................................................................................................................... 28 0 20 0.15 3 3 0 0 0 0
.................................................CCATCCGGCATGATGACCCTCGAT.................................................................................................................................................................................. 24 0 20 0.15 3 3 0 0 0 0
..........................................TTAGATACCATCCGGCATGATGACCCT...................................................................................................................................................................................... 27 0 20 0.15 3 3 0 0 0 0
........................................................GCATGATGACCCTCGATACGGAGCT.......................................................................................................................................................................... 25 0 20 0.15 3 0 3 0 0 0
.........................................CTTAGATACCATCCGGCATGATGACCCT...................................................................................................................................................................................... 28 0 20 0.15 3 3 0 0 0 0
.....................................................................................................................................................................................................................TCGACCACCGTTTGATCGCCCAT............... 23 1 7 0.14 1 1 0 0 0 0
...................................CAGGTACTTAGATACCATCCGGCATGAT............................................................................................................................................................................................ 28 0 18 0.11 2 2 0 0 0 0
..................................TCAGGTACTTAGATACCATCCGGCATGAT............................................................................................................................................................................................ 29 0 18 0.11 2 2 0 0 0 0
............................................AGATACCATCCGGCATGATGACCCTCGAT.................................................................................................................................................................................. 29 0 18 0.11 2 2 0 0 0 0
......................................................................................................................................................................................................TGGCCTGCCCGGCTTTCGACCAC.............................. 23 0 20 0.10 2 0 2 0 0 0
.....................................................................................................................................................................................................CTGGCCTGCCCGGCTTTCGACCACCGT........................... 27 0 20 0.10 2 1 0 0 0 1
........................................ACTTAGATACCATCCGGCATGATGACCC....................................................................................................................................................................................... 28 0 20 0.10 2 2 0 0 0 0
...TCTAGTTGTAGCTTGGGTCACTCGCCT............................................................................................................................................................................................................................. 27 0 20 0.10 2 0 2 0 0 0
.................................CTCAGGTACTTAGATACCATCCGGCAT............................................................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
..........................................TTAGATACCATCCGGCATGATGACCC....................................................................................................................................................................................... 26 0 20 0.10 2 1 1 0 0 0
..............................................................TGACCCTCGATACGGAGCTAGCGCCT................................................................................................................................................................... 26 0 20 0.10 2 1 1 0 0 0
..............................................ATACCATCCGGCATGATGACCCTCGAT.................................................................................................................................................................................. 27 0 20 0.10 2 1 1 0 0 0
..................................................................................................................................................................................................TAACTGGCCTGCCCGGCTTTCGACCAC.............................. 27 0 20 0.10 2 2 0 0 0 0
........................................................................................................................................................................................................GCCTGCCCGGCTTTCGACCACCGT........................... 24 0 20 0.10 2 1 1 0 0 0
................................................ACCATCCGGCATGATGACCCTCGATAC................................................................................................................................................................................ 27 0 20 0.10 2 1 1 0 0 0
................................................................................................................................................................................................................................TTGGTCGCCCATAGGCCTCTACTGCAC 27 1 20 0.10 2 2 0 0 0 0
...........................................................................................................................................................................................................TGCCCGGCTTTCGACCACCGTTTGGT...................... 26 0 20 0.10 2 0 2 0 0 0
...............................................................GACCCTCGATACGGAGCTAGCGCCT................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
....CTAGTTGTAGCTTGGGTCACTCGCCT............................................................................................................................................................................................................................. 26 0 20 0.10 2 1 1 0 0 0
........................................................................................................................................CTCGGCGCTGAATGGCAAACTCAAACCT....................................................................................... 28 0 11 0.09 1 1 0 0 0 0
...........................................................................................................................................GGCGCTGAATGGCAAACTCAAACCTCT..................................................................................... 27 0 12 0.08 1 0 1 0 0 0
..............................................................................................................................................GCTGAATGGCAAACTCAAACCTCT..................................................................................... 24 0 12 0.08 1 0 1 0 0 0
..........................................................................................................................................CGGCGCTGAATGGCAAACTCAAACCT....................................................................................... 26 0 12 0.08 1 0 0 1 0 0
..................................................................................................................AAGTATCTCGTTTATCTCTGAGCT................................................................................................................. 24 0 16 0.06 1 1 0 0 0 0
....CTAGTTGTAGCTTGGGTCACTCGCCTT............................................................................................................................................................................................................................ 27 0 17 0.06 1 0 1 0 0 0
.........TGTAGCTTGGGTCACTCGCCTT............................................................................................................................................................................................................................ 22 0 18 0.06 1 1 0 0 0 0
...........................................TAGATACCATCCGGCATGATGACCCTC..................................................................................................................................................................................... 27 0 18 0.06 1 1 0 0 0 0
.................................................................................................................................................................................................................................TGGTCGCCCATAGGCCTCTACTGTAC 26 0 18 0.06 1 1 0 0 0 0
..................................................................................................................................................................................................................................GGTCGCCCATAGGCCTCTACTGTAC 25 0 18 0.06 1 1 0 0 0 0
....................................AGGTACTTAGATACCATCCGGCATGAT............................................................................................................................................................................................ 27 0 18 0.06 1 1 0 0 0 0
...................................................................................................................................................................................................................................GTCGCCCATAGGCCTCTACTGTAC 24 0 19 0.05 1 1 0 0 0 0
.......................................TACTTAGATACCATCCGGCATGATGAC......................................................................................................................................................................................... 27 0 19 0.05 1 1 0 0 0 0
..........GTAGCTTGGGTCACTCGCCTT............................................................................................................................................................................................................................ 21 0 19 0.05 1 0 1 0 0 0
..................................ACAGGTACTTAGATACCGTCCGGCATGAT............................................................................................................................................................................................ 29 2 19 0.05 1 1 0 0 0 0
.............................................GATACCATCCGGCATGATGACCCTCGAT.................................................................................................................................................................................. 28 0 19 0.05 1 1 0 0 0 0
...................................CAGGTACTTAGATACCATCCGGCAT............................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.........................................CCTAGATACCATCCGGCAT............................................................................................................................................................................................... 19 1 20 0.05 1 1 0 0 0 0
................................................ACCATCCAGCATGATGACCCTCGAT.................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................................................................................CGTTTGGTCGCCCATAGGCCTCTAC..... 25 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................GGCCTGCCCGGCATTCGACCACCG............................ 24 1 20 0.05 1 1 0 0 0 0
.....................................................CCGGCATGATGACCCTCGATACGGA............................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
......................................................CGGCATGATGACCCTCGAT.................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0
.......................................................GGCATGATGACCCTCGATACGGAGC........................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................GTTTGGTCGCCCATAGGCATCTACT.... 25 1 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................................GGGCCTGCCCGGCTTTCGACCACCGT........................... 26 1 20 0.05 1 0 1 0 0 0
.......................................................TGCATGATGACCCTCGATACGGAGCT.......................................................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
...................................CAGGTACTTAGATACCATCCGGC................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................TGCCTGCCCGGCTTTCGACCACCGT........................... 25 1 20 0.05 1 0 1 0 0 0
...TCTAGTTGTAGCTTGGGTCACT.................................................................................................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0
...................................CAAGTACTTAGATACCATCCGGCATGA............................................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
........................................ACTTAGATACCATCCGGCA................................................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................................TGGCCTGCCCGGCTTTCGACCACCG............................ 25 0 20 0.05 1 0 1 0 0 0
................................................................ACCCTCGATACGGAGCTAGCGCCT................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................................................................................CACCGTTTGGTCGCCCATAGGCCT......... 24 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................................................TGCCCGGCTTTCGACCACCGT........................... 21 0 20 0.05 1 0 0 1 0 0
.......................................................GGCATGATGACCCTCGATACGGAGCTA......................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................................TGGCCTGCCCGGCTTTCGACAACCGT........................... 26 1 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................................TGGCCTGCCCGGCTTTCGACCGCCGT........................... 26 1 20 0.05 1 1 0 0 0 0
............................................................................................................................................................TCAAACCTCTGTGACGGAGGCTACTA..................................................................... 26 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................................................TTGGTCGCACATAGGCCTCTACT.... 23 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................ACTGGCCTGCCCGGCTTTCGACCAC.............................. 25 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................................CCGGCTTTCGACCACCGTTTGGTCGC................... 26 0 20 0.05 1 1 0 0 0 0
...........................................TAGATACCATCCGGCATGATGACC........................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................................CACCGTTTGGTCGCCCATAGGCCTC........ 25 0 20 0.05 1 1 0 0 0 0
...................................CAAGTACTTAGATACCATCCGGCAT............................................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................................TGGCCTGCCCGGCTTTCTACCACCGT........................... 26 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................................AACTGGCCTGCCCGGCTTTCGACCAC.............................. 26 0 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................................................................CTGCCCGGCTTTCGACCACCTT........................... 22 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................GGCCTGCCCGGCTTTCGACCACCG............................ 24 0 20 0.05 1 1 0 0 0 0
...................................................ATCCGGCATGATGACCCTCGAT.................................................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0
......................................................CGGCATGATGACCCTCGATACGGAGC........................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................................CCTGCCCGGCTTTCGACCACCGT........................... 23 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................TAACTGGCCTGCCCGGCTTTCGACCA............................... 26 0 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................................................................CTGCCCGGCTTTCGACCACCGT........................... 22 0 20 0.05 1 1 0 0 0 0
........................................ACTTAGATACCATCCGGCATGATGA.......................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.................................................CCATCCGGCATGATGACCCTCGATAC................................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0
...........................................TAGATACCATCCGGCATGA............................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0
...............................................................GACCCTCGATACGGAGCTAGCGCC.................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
......AGTTGTAGCTTGGGTCACTCGCCT............................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
...............................................TACCATCCGGCATGATGACCCTCGA................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
....................................AAGTACTTAGATACCATCCGGCATGA............................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................................TGGTCGCCCATAGGCCTCTACTGT.. 24 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................................................................................................CCGTTTGGTCGCCCATAGGCCTCTACT.... 27 0 20 0.05 1 0 1 0 0 0
.........TGTAGCTTGGCTCACTCGCCT............................................................................................................................................................................................................................. 21 1 20 0.05 1 0 1 0 0 0
.................................................CCATCCGGCATGATGACCCTCGA................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................ACCGTTTGGTCGCCCATAGGCCTCTAC..... 27 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................................TGGCCTGCCCGGCTTTCGACCACCGTT.......................... 27 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................ACCACCGTTTGGTCGCCCATAGGCCTCT....... 28 0 20 0.05 1 1 0 0 0 0
..................................TCAGGTACTTAGATACCATCCGGCATGA............................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0 0
.....................................................ACGGCATGATGACCCTCGATACGGAGCT.......................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................................................AAACTGGCCTGCCCGGCTTTCGACCAC.............................. 27 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................................................................GTCCCACATAGGCCTCTGC..... 19 3 20 0.05 1 0 0 1 0 0
....................................AGGTACTTAGATACCATCCGGCATG.............................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000001990:15367-15617 - dwi_256 CAAAGATCA--------ACATCGAA--C-CCAGTGAGCGGAATGGAG----TCCATGAATCTATGGTAGGCCGTAC-TACTGGGAGCTATGCCTCGATCGCGGAGCGTATAACTAAA----TGGAAATATCTATTTCATAGAGCAAATAGAGACTCGAGCCGCGACTTACCGTTTGAGTTTG------------------------------------------------GAGACACTGCCTCCGATGATGATGATGATCTTATTGACCGGACGGGCCGAAAGCTGGTGGCAAACCAGCGGGTATCCGGAGATGACATG
droVir3 scaffold_244:903-1013 + GAAATACAG----------G-------C-ACGTA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGGGTCC--------------------------ACCCTAGCGGTAGAAAGGGCTTTGAGAGTAGACGTCAGCTTAGGGGGAAA-AACGATCAGCATGACGATGCTCATC--------------------------------------------------------------------
droMoj3 scaffold_6264:9276-9383 - ACTTCACAAC--G-------TTGACGCAACT---AACCCAGATGGAT----GCTGGGA----------GA-----GCA-------------------------------------------------------------------CCCCACGATGCGAGACGCAA---------------------------------------------CAGATCCGGAAGAAGAACGCGACGCAAGGCCGGCCCTCGGA--------------------------------------------------------------------
dp5 Unknown_group_133:28573-28640 - AACTGAGAAG--T-------CTGACGCAATT---AACGATGTTGGCCACAGAGTTCGA----------GA-----GCATCCAGGAACGGAACATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_55:40393-40447 + AGTTCGAGAC--G-------TTACCAGAACT---GACCCAGTTGATAGTAGCGTACGA----------GA-----CAACGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12911:1512570-1512594 - AGTTTAAAAC--A-------GTGACGGCATT---GAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000392143:1177-1219 + GATAAGC-------------------------------------------------------------------------------------TTCGGC--------------------------------------------------------------------------------------------------------------------------AACAG-GACAAAGACACTGAACCTGTTGGTG--------------------------------------------------------------------
droKik1 scf7180000300801:5201-5315 - GCGAGAG------ATTCGCA-------C-CCGGA-----------------------------------------------------TCCTATTGGCA------------------------------------------GATAGATCC--------------------------CATCGAGACCTCACAAGGGGTCTAGTAGTGACCATTCACCTGGGCCAACA-GCAAGTAAAACTGTTCTTGCTGGTG--------------------------------------------------------------------
droFic1 scf7180000449829:189-309 + TCGATTCAAAGAAATTCGAA-------C-CCAGA-----------------------------------------------------TAAGTCTTGCC------------------------------------------GATAACTCG--------------------------AGGATAGAGGTGTCAAAATTATTCATAGCCAAGATCACACTAGTACAGGA-TCTCCTCGAGGTGCCACTACTTTTC--------------------------------------------------------------------
droEle1 scf7180000490490:5185-5377 + AGTTCCGAAC--C-------ATTGGGGAACT---GGCTCAGTTGGCCACCGAGTTCGA----------GG-----CTGCCCAGAAGCGAAGCCTCGAGAGGAGCAATTATAACCACGCCCCTGGAAATA------------------------------CGACGGCTTACCGCCTAGAGTAGAAGTAACGAGGTTACTCCTGGCGGACGTGACGCTCGCCCGGAA-GACAATTCAGGTCCCCCTTCTAGTA--------------------------------------------------------------------
droRho1 scf7180000764233:258-370 - GGGAGA--------TTCGCA-------C-CCAGA-----------------------------------------------------TTAATCTCGCT------------------------------------------GACACGTCT--------------------------CGAGTAGAAGTAACAAGGTTACTCCTTGCGGACGTGACGCTCGCCCGGAA-GACAATTCAGGTTCCCCTTCTAGTA--------------------------------------------------------------------
droBia1 scf7180000302049:20657-20738 - ACTTCACCAC--T-------TTGCAGCAACT---TACCACTTTAGCGGTAAATTACGA----------GG-----TCACCCGCGATCGGAGCACA--------------------------------------------------------------------------------------------------------------------------GGAGAGAA-GACGA-------------------C--------------------------------------------------------------------
droTak1 scf7180000412262:3778-3898 + TCAATTCAAAGAAATGCGAA-------C-CCAGA-----------------------------------------------------TAAGTCTTGCC------------------------------------------GATAATTCG--------------------------ATGATTGAGGTATCGAAGATTTTTATAGCCAGGATCACACTCGTGCATGA-CCTTCTCGAAGTACCGCTGCTCGTC--------------------------------------------------------------------
droEug1 scf7180000408208:28001-28068 - ACTTCACCAC--T-------TTGGAGCAACT---TACCGCTTTAGCGGTAAACTACGA----------GG-----TCACCCGCAATCGGAGCACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:2212105-2212114 - CTGTCCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUn_120:111991-112043 - ATTTTCGAGC--A-------CTGGCTGAACT---GACTTAGCTAGTAGTAGATTTTGA----------GA-----CAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CAAAGATCA--------ACATCGAA--C-CCAGTGAGCGGAATGGAG----TCCATGAATCTATGGTAGGCCGTAC-TACTGGGAGCTATGCCTCGATCGCGGAGCGTATAACTAAA----TGGAAATATCTATTTCATAGAGCAAATAGAGACTCGAGCCGCGACTTACCGTTTGAGTTTG------------------------------------------------GAGACACTGCCTCCGATGATGATGATGATCTTATTGACCGGACGGGCCGAAAGCTGGTGGCAAACCAGCGGGTATCCGGAGATGACATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................CTCCGATGATGATGATGA.............................................................1840.25100010
..............................................................................................................................................................................TGAGTTTG------------------------------------------------GAGACACTGCCTCCGA.........................................................................24200.20404000
..............................................................................................................................................................................TGAGTTTG------------------------------------------------GAGACACTGCCTCCG..........................................................................23200.15303000
....................................................................GGCCGTAC-TACTGGGAGCTATGC...................................................................................................................................................................................................................................23200.10200020
....................................................................................................................................................................................................................................................................TTATTGACCGGACGGGCCGAAAG....................................23140.07101000
.......................................................................................................................................TCATAGAGCAAATAGAGACTCGAG................................................................................................................................................................24150.07101000
.......................................................................................................................................TCATAGAGCAAATAGAGACTCGAGC...............................................................................................................................................................25150.07101000
.............................................................................................................................................................................TTGAGTTTG------------------------------------------------GAGACACTGCCTCCGA.........................................................................25160.06100010
.......................................................................................................................................TCATAGAGCAAATAGAGACTCGA.................................................................................................................................................................23160.06101000
......TCA--------ACATCGAA--C-CCAGTGAGCGGAA.....................................................................................................................................................................................................................................................................................25170.06101000
..............................................................................................................................................................................TGAGTTTG------------------------------------------------GAGACACTGCCTCCGATGAA.....................................................................28190.05101000
...............................................................................................................................................................................GAGTTTG------------------------------------------------GAGACACTGCCTCCGATG.......................................................................25190.05101000
..................................................................TAGGCCGTAC-TACTGGGAGCT.......................................................................................................................................................................................................................................21200.05101000
...................................................TCCATGAATCTATGGTAGGCCGTAC-..................................................................................................................................................................................................................................................25200.05100010
.....................................................................................................................................................................................................................................................................TATTGACCGGACGGGCCGAAAGCTG.................................25200.05101000
......................................................ATGAATCTATGGTAGGCCGTAC-TA................................................................................................................................................................................................................................................24200.05110000
..................................................................................GGAGCTATGCCTCGATCGCGGT.......................................................................................................................................................................................................................22200.05101000
.....................................................................................................................................................................................................................................................................TATTGACCGGACGGGCCGAAAGCTGG................................26200.05101000
...................................................................AGGCCGTAC-TACTGGGAGCTA......................................................................................................................................................................................................................................21200.05101000
...............................................................................................................................................................................................................................................................................ACGGGCCGAAAGCTGGTGGCAA..........................22200.05101000
...............................................................................CTGGGAGCTATGCCTCGATCGC..........................................................................................................................................................................................................................22200.05101000
....................................................................GGCCGTAC-TACTGGGAGCTATGCCT.................................................................................................................................................................................................................................25200.05101000
.........................................................AATCTATGGTAGGCCGTAC-T.................................................................................................................................................................................................................................................20200.05101000
..............................................................................................................................................................................................................................................................................GACGGGCCGAAAGCTGGTGG.............................20200.05100010
..........................................................ATCTATGGTAGGCCGTAC-TACTGGG...........................................................................................................................................................................................................................................25200.05100010
.................................................................GTAGGCCGTAC-TACTGGGAGCTATGCC..................................................................................................................................................................................................................................27200.05101000
...............................................................................CTGGGAGCTATGCCTCGATCGCGG........................................................................................................................................................................................................................24200.05100010
..........................................................................AC-TACTGGGAGCTATGCCTCGA..............................................................................................................................................................................................................................22200.05100010
droVir3
GAAATACAG----------G-------C-ACGTA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGGGTCC--------------------------ACCCTAGCGGTAGAAAGGGCTTTGAGAGTAGACGTCAGCTTAGGGGGAAA-AACGATCAGCATGACGATGCTCATC--------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCA......................................................................252012.952590020300290100010000000900917052022070132340101713000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCAT.....................................................................262010.30206004350200080300000001000110403260010001824151212000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTC.......................................................................24207.70154112000010000000000000010014882317962105405019000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCATC--------------------------------------------------------------------27204.75950010084100000000000000005090160040921112400000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGC.........................................................................22204.00800046111100300030000000000000131050140300330000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATG..........................................................................21203.95790030830413830010000000000016302451002019200000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACG.............................................................................18202.30463000300014200000000000010404503120001020100000000000000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTAGGGGGA................................................................................................28191.9537000000000000000000000000000000000000000024333332313020000410000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTAGGGG..................................................................................................26191.6832000000000000000000000000000000000030000027411200121311100200000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCT........................................................................23201.4529000100300200000000000003025300021012013000000000000000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTAGG....................................................................................................24191.3726000000000010000000000000001100000000000005310220222200100100000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTAGGG...................................................................................................25191.2123000000002000000000000000000100000000000022011021401212000010000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGAT...........................................................................20200.7515000000402000000000000002001010010030001000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCATA--------------------------------------------------------------------27200.7515000000000000000000000001102102002002004000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTTT......................................................................25200.7014001000100000000000000003101200000002102000000000000000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTAGGGGG.................................................................................................27190.6813001000000000000000000000000000000010000020100100114000000010000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCT......................................................................25200.6513000001000000000000000000401000000000006100000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCATT--------------------------------------------------------------------27200.6012001000200000000000000001013000011001100000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTT.......................................................................24200.5010000000200000000000000000002400010000001000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCC......................................................................25200.357001040000000000000000000000001010000000000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGA............................................................................19200.357000010001000000000000001000000110010100000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCAA.....................................................................26200.306000000300000000000000001000000000002000000000000000000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTAGGGGT.................................................................................................27190.214000000000000000000000000000000000000000000100000210000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTAGGGGGAA...............................................................................................29180.173000000000000000000000000000000000000000010010100000000000000000
................................................................................................................................................................................................................................A-AACGATCAGCATGACGATGCTCATC--------------------------------------------------------------------26200.153003000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................A-AACGATCAGCATGACGATGCTCA......................................................................24200.153003000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCAG.....................................................................26200.153000010100000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................GGCTTTGAGAGTAGACGTCAGCTTAG.....................................................................................................26190.112000000000000000000000000000200000000000000000000000000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTAG.....................................................................................................23190.112000000000000000000000000000000000000000000000100000000000010000
............................................................................................................................................................................................................................GGAAA-AACGATCAGCATGACGAT...........................................................................23200.102000000001000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................A-AACGATCAGCATGACGATGC.........................................................................21200.102000010000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTA.......................................................................24200.102000000200000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TTAGGGGGAAA-AACGATCAGCATG................................................................................24200.102000000000010000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................GACGTCAGCTTAGGGGGA................................................................................................18200.102000010000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................AACGATCAGCATGACGATGCTCAT.....................................................................24200.102001000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCAGT--------------------------------------------------------------------27200.102000000000000000000000000000000000000020000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCTA.....................................................................26200.102000000000000000000000000002000000000000000000000000000000000000
............................................................................................................................................................................................................................GGAAA-AACGATCAGCATGACGATG..........................................................................24200.102000000000000000000000000000000010001000000000000000000000000000
.................................A-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGGGTCC--------------------------................................................................................................................................................21200.102000000000000000000000000001000000000010000000000000000000000000
..............................................................................................................................................................................................................................AAA-AACGATCAGCATGACGATGCTCA......................................................................26200.102000000000000000000000001000000000000100000000000000000000000000
................................................................................................................................................................................................................................A-AACGATCAGCATGACGATGCTC.......................................................................23200.102000010000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTAGGGGGAAA-.............................................................................................30160.061000000000000000000000000000000000000000000100000000000000000000
.................................................................................................................................................................................................................TCAGCTTAGGGGGAAA-AACGATCAGC...................................................................................26170.061000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TCAGCTTAGGGGGAAA-AACGA........................................................................................21180.061000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTAGGGGGT................................................................................................28190.051000000000000000000000000000000000000000010000000000000000000000
................................................................................................................................................................................................GGCTTTGAGAGTAGACGTCAGCTT.......................................................................................................24190.051000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCT........................................................................................................20190.051000000000000000000000000000000000000000000000100000000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTA......................................................................................................22190.051000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................GGCTTTGAGAGTAGACGTCAGCTA.......................................................................................................24190.051000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTT.......................................................................................................21190.051000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................TTGAGAGTAGACGTCAGCTTAGGGGG.................................................................................................26190.051000000000000000000000000000000000010000000000000000000000000000
...........................C-ACGTA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGGG.............................................................................................................................................................................23200.051000000000000000000000000000100000000000000000000000000000000000
......CAG----------G-------C-ACGTA-----------------------------------------------------TCCGCC..................................................................................................................................................................................................................................16200.051000000000000000000000000000000000000000000010000000000000000000
...........................................................................................CCTGGCA------------------------------------------GATGGGTCC--------------------------ACCCTAG.........................................................................................................................................23200.051000000000000000000000000000000010000000000000000000000000000000
.......AG----------G-------C-ACGTA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGGGT............................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AGGGGGAAA-AACGATCAGCATGACG.............................................................................25200.051000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................A-AACGATCAGCATGACGATGCTCAT.....................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGT............................................................................19200.051000000100000000000000000000000000000000000000000000000000000000
.............................ACGTA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGGGTCC--------------------------AC..............................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................GAAA-AACGATCAGCATGACGATGCTCAT.....................................................................28200.051000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCG......................................................................25200.051000000000000000000000001000000000000000000000000000000000000000
....TACAG----------G-------C-ACGTA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GA.................................................................................................................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................GGAAA-AACGATCAGCATGACGATGCTCA......................................................................28200.051000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................CTTAGGGGGAAA-AACGATCAGCATGAT..............................................................................27200.051000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................AAA-AACGATCAGCATGACGAT...........................................................................21200.051000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCTAT--------------------------------------------------------------------27200.051000000000000000000000000000000000001000000000000000000000000000
.AAATACAG----------G-------C-ACGTA-----------------------------------------------------TCCGCCT.................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.............................ACGTA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGG..............................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................................CCGCCTGGCA------------------------------------------GATGGGTCC--------------------------ACC.............................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................A-AACGATCAGCATGACGA............................................................................18200.051000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................AAA-AACGATCAGCATGACGATG..........................................................................22200.051000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................GAGTAGACGTCAGCTTAGGGG..................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................TTTGAGAGTAGACGTCAGCTTAAA....................................................................................................24200.051100000000000000000000000000000000000000000000000000000000000000
................................TA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGGGTCC--------------------------ACCCTAG.........................................................................................................................................29200.051100000000000000000000000000000000000000000000000000000000000000
..AATACAG----------G-------C-ACGTA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GA.................................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
................................TA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGGGTCC--------------------------A...............................................................................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................TTGAGAGTAGACGTCAGCTTAGG....................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATC..........................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
................................TA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGGGTCC--------------------------................................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................GGCTTTGAGAGTAGACGTC............................................................................................................19200.051000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................GAAA-AACGATCAGCATGACGATGCTCA......................................................................27200.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................AGACGTCAGCTTAGGGGG.................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................TCCGCCTGGCA------------------------------------------GATGGGTCC--------------------------A...............................................................................................................................................21200.051000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................ATCAGCATGACGATGCTCATC--------------------------------------------------------------------21200.051000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................TTGAGAGTAGACGTCAGCTTAGGGG..................................................................................................25200.051000000000000000000000000000000000000000000000000000001000000000
....TACAG----------G-------C-ACGTA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATG...............................................................................................................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................CTTAGGGGGAAA-AACGATCAGCATGA...............................................................................26200.051000000000000000000000000010000000000000000000000000000000000000
...........................C-ACGTA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGGGT............................................................................................................................................................................24200.051000000000000000000000000000000000000001000000000000000000000000
....TACAG----------G-------C-ACGTA-----------------------------------------------------TCCGCCTGGCA------------------------------------------GATGG..............................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................CGCCTGGCA------------------------------------------GATGGGTCC--------------------------ACC.............................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
GAAATACAG----------G-------C-ACGTA-----------------------------------------------------TCCGCCTGG...............................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................AA-AACGATCAGCATGACGATGCTCAC.....................................................................26200.051000100000000000000000000000000000000000000000000000000000000000
droMoj3
ACTTCACAAC--G-------TTGACGCAACT---AACCCAGATGGAT----GCTGGGA----------GA-----GCA-------------------------------------------------------------------CCCCACGATGCGAGACGCAA---------------------------------------------CAGATCCGGAAGAAGAACGCGACGCAAGGCCGGCCCTCGGA--------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................TCCGGAAGAAGAACGCGACGCAAGG................................................................................2580.756600000
......................................................................................................................................................................................................................TCCGGAAGAAGAACGCGACGCA...................................................................................2280.504400000
......................................................................................................................................................................................................................TCCGGAAGAAGAACGCGACGCAAGGCC..............................................................................2780.383200001
......................................................................................................................................................................................................................TCCGGAAGAAGAACGCGACGCAAGGC...............................................................................2680.383300000
........................................................................................................................................................................................................................CGGAAGAAGAACGCGACGCAAGG................................................................................23120.253200010
........................................................................................................................................................................................................................CGGAAGAAGAACGCGACGCAAGGC...............................................................................24120.172200000
................................................................................................................................................................CGCAA---------------------------------------------CAGATCCGGAAGAAGAACGCGAC......................................................................................2870.141100000
......................................................................................................................................................................................................................TCCGGAAGAAGAACGCGACGCAAG.................................................................................2480.131100000
......................................................................................................................................................................................................................TCCGGAAGAAGAACGCGACGCAAGGTT..............................................................................2780.131100000
.....................................................................................................................................................................................................................ATCCGGAAGAAGAACGCGACGC....................................................................................2280.131100000
......................................................................................................................................................................................................................TCCGGAAGAAGAACGCGA.......................................................................................1880.131100000
......................................................................................................................................................................................................................TCCGGAAGAAGAACGCGACGCAA..................................................................................2380.131100000
........................................................................................................................................................................................................................CGGAAGAAGAACGCGACGCAAG.................................................................................22120.081100000
dp5
AACTGAGAAG--T-------CTGACGCAATT---AACGATGTTGGCCACAGAGTTCGA----------GA-----GCATCCAGGAACGGAACATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................GAGTTCGA----------GA-----GCATCCAGGAAC........................................................................................................................................................................................................................................22112.642902310001310
..................................................GAGTTCGA----------GA-----GCATCCAGGA..........................................................................................................................................................................................................................................20112.182402310000000
..................................................GAGTTCGA----------GA-----GCATCCAGGAACG.......................................................................................................................................................................................................................................23112.092301800000410
..................................................GAGTTCGA----------GA-----GCATCCAGGAACGG......................................................................................................................................................................................................................................2412.0020200000000
................................................CAGAGTTCGA----------GA-----GCATCCAGGAACGG......................................................................................................................................................................................................................................2611.0010100000000
.................................................AGAGTTCGA----------GA-----GCATCCAGGAACGG......................................................................................................................................................................................................................................2511.0010000000100
..................................................GAGTTCGA----------GA-----GCATCCAGGAA.........................................................................................................................................................................................................................................21110.911001000000000
..............................................CACAGAGTTCGA----------GA-----GCATCCAGGA..........................................................................................................................................................................................................................................24110.3640400000000
..................................................GAGTTCGA----------GA-----GCATCCAGG...........................................................................................................................................................................................................................................19110.2730300000000
...................................................AGTTCGA----------GA-----GCATCCAGGAACG.......................................................................................................................................................................................................................................22110.2730300000000
.....................TGACGCAATT---AACGATGTTGG..................................................................................................................................................................................................................................................................................2140.2510000000010
.ACTGAGAAG--T-------CTGACGCAATT---AACG.........................................................................................................................................................................................................................................................................................2540.2510100000000
..................................................GAGTTCGA----------GA-----GCATCCAGGAAA........................................................................................................................................................................................................................................22110.1820200000000
.......................................TGTTGGCCACAGAGTTCGA----------GA-----GCAT................................................................................................................................................................................................................................................25110.1820000001010
.......................................TGTTGGCCACAGAGTTCGA----------GA-----GCATC...............................................................................................................................................................................................................................................26110.1820200000000
..........................................TGGCCACAGAGTTCGA----------GA-----GCATCC..............................................................................................................................................................................................................................................24110.1820200000000
...................................................AGTTCGA----------GA-----GCATCCAGG...........................................................................................................................................................................................................................................18110.1820200000000
..............................................CACAGAGTTCGA----------GA-----GCATC...............................................................................................................................................................................................................................................19130.1520200000000
..............................T---AACGATGTTGGCCACAGAGTTCGA----------GA-----....................................................................................................................................................................................................................................................2780.1310100000000
.............................TT---AACGATGTTGGCCACT.............................................................................................................................................................................................................................................................................1880.1310100000000
....................................................GTTCGA----------GA-----GCATCCAGGA..........................................................................................................................................................................................................................................18110.0910100000000
.................................................AGAGTTCGA----------GA-----GCATCCAGG...........................................................................................................................................................................................................................................20110.0910100000000
..........................................TGGCCACAGAGTTCGA----------GA-----GCATCCA.............................................................................................................................................................................................................................................25110.0910000001000
...................................................AGTTCGA----------GA-----GCATCCAGGA..........................................................................................................................................................................................................................................19110.0910100000000
.......................................TGTTGGCCACAGAGTTCGA----------GA-----GC..................................................................................................................................................................................................................................................23110.0910100000000
..........................................TGGCCACAGAGTTCGA----------GA-----GCATC...............................................................................................................................................................................................................................................23110.0910000001000
...............................................ACAGAGTTCGA----------GA-----GCATCCAGGAA.........................................................................................................................................................................................................................................24110.0910100000000
................................................CAGAGTTCGA----------GA-----GCATCCAGGA..........................................................................................................................................................................................................................................22110.0910100000000
..................................................GAGTTCGA----------GA-----GCATCCAGGT..........................................................................................................................................................................................................................................20110.0910100000000
..........................................TGGCCACAGAGTTCGA----------GA-----GCAT................................................................................................................................................................................................................................................22110.0910000000010
...........................................GGCCACAGAGTTCGA----------GA-----GCATCC..............................................................................................................................................................................................................................................23110.0910100000000
...................................................AGTTCGA----------GA-----GCATCCAGGAAC........................................................................................................................................................................................................................................21110.0910100000000
.......................................TGTTGGCCACAGAGTTCGA----------GA-----GCAA................................................................................................................................................................................................................................................25120.0810100000000
...............................................ACAGAGTTCGA----------GA-----GCATCCA.............................................................................................................................................................................................................................................20130.0810100000000
..............................................CACAGAGTTCGA----------GA-----GCATCCA.............................................................................................................................................................................................................................................21130.0810100000000
droPer2
AGTTCGAGAC--G-------TTACCAGAACT---GACCCAGTTGATAGTAGCGTACGA----------GA-----CAACGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................CCAGAACT---GACCCAGTTGATAGTAGA...........................................................................................................................................................................................................................................................................2620.501010000
.......................CCAGAACT---GACCCAGTTGATAGTA.............................................................................................................................................................................................................................................................................2420.501010000
droAna3
AGTTTAAAAC--A-------GTGACGGCATT---GAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GATAAGC-------------------------------------------------------------------------------------TTCGGC--------------------------------------------------------------------------------------------------------------------------AACAG-GACAAAGACACTGAACCTGTTGGTG--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCGAGAG------ATTCGCA-------C-CCGGA-----------------------------------------------------TCCTATTGGCA------------------------------------------GATAGATCC--------------------------CATCGAGACCTCACAAGGGGTCTAGTAGTGACCATTCACCTGGGCCAACA-GCAAGTAAAACTGTTCTTGCTGGTG--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCGATTCAAAGAAATTCGAA-------C-CCAGA-----------------------------------------------------TAAGTCTTGCC------------------------------------------GATAACTCG--------------------------AGGATAGAGGTGTCAAAATTATTCATAGCCAAGATCACACTAGTACAGGA-TCTCCTCGAGGTGCCACTACTTTTC--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGTTCCGAAC--C-------ATTGGGGAACT---GGCTCAGTTGGCCACCGAGTTCGA----------GG-----CTGCCCAGAAGCGAAGCCTCGAGAGGAGCAATTATAACCACGCCCCTGGAAATA------------------------------CGACGGCTTACCGCCTAGAGTAGAAGTAACGAGGTTACTCCTGGCGGACGTGACGCTCGCCCGGAA-GACAATTCAGGTCCCCCTTCTAGTA--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGGAGA--------TTCGCA-------C-CCAGA-----------------------------------------------------TTAATCTCGCT------------------------------------------GACACGTCT--------------------------CGAGTAGAAGTAACAAGGTTACTCCTTGCGGACGTGACGCTCGCCCGGAA-GACAATTCAGGTTCCCCTTCTAGTA--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACTTCACCAC--T-------TTGCAGCAACT---TACCACTTTAGCGGTAAATTACGA----------GG-----TCACCCGCGATCGGAGCACA--------------------------------------------------------------------------------------------------------------------------GGAGAGAA-GACGA-------------------C--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCAATTCAAAGAAATGCGAA-------C-CCAGA-----------------------------------------------------TAAGTCTTGCC------------------------------------------GATAATTCG--------------------------ATGATTGAGGTATCGAAGATTTTTATAGCCAGGATCACACTCGTGCATGA-CCTTCTCGAAGTACCGCTGCTCGTC--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACTTCACCAC--T-------TTGGAGCAACT---TACCGCTTTAGCGGTAAACTACGA----------GG-----TCACCCGCAATCGGAGCACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSim2
CTGTCCGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droYak3
ATTTTCGAGC--A-------CTGGCTGAACT---GACTTAGCTAGTAGTAGATTTTGA----------GA-----CAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 05/17/2015 at 10:26 PM