ID:

dwi_2496

 Coordinate:

scf2_1100000004902:4959550-4959700 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dwil\GK11837-cds]; exon [dwil_GLEANR_12013:14]; intron [Dwil\GK11837-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TATCATCAATGGGAAGCTCAGCCAGCCCACCGCCGCCCCCCTTGATAGAGGTAACAACCACCATATCAACATCAACAACATCTACAAAAACAACAACTACAACAACAACAGCCAACTAGCACACTGAGAACAACAAAAAATTATATGAAATTCCTTTTTTTTATTTATGTATATATATTTACTACACAACCAACAACAACAAGAACAACAACCGACAAAAAAGTCTAGTGATGAGGACCCATAACGGGACA
**************************************************..........................................................................((.........................................................................))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
...............GCTCAGCCAGCCAACACCCGC....................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0
....................................................................................................AACAACAACAGCCAACCAG.................................................................................................................................... 19 1 8 0.13 1 0 1
...........................................................................................................................................................................................................................AAAATTTACTGATGAGGACC............ 20 3 18 0.06 1 0 1

Anti-sense strand reads

ATAGTAGTTACCCTTCGAGTCGGTCGGGTGGCGGCGGGGGGAACTATCTCCATTGTTGGTGGTATAGTTGTAGTTGTTGTAGATGTTTTTGTTGTTGATGTTGTTGTTGTCGGTTGATCGTGTGACTCTTGTTGTTTTTTAATATACTTTAAGGAAAAAAAATAAATACATATATATAAATGATGTGTTGGTTGTTGTTGTTCTTGTTGTTGGCTGTTTTTTCAGATCACTACTCCTGGGTATTGCCCTGT
**************************************************..........................................................................((.........................................................................))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V119
head
.......................TCGTTTGTCGGCGGGGGGAAC............................................................................................................................................................................................................... 21 3 1 1.00 1 1 0
.........................................................................................................................................................................................TGTTGGTTGTTGTTGTTCTT.............................................. 20 0 6 0.17 1 0 1
.................................................................................................................................................................................AAATGATATGTTGGATGATGT..................................................... 21 3 8 0.13 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004902:4959500-4959750 + dwi_2496 TATCATCAATGGGAAGCTCAGCCAGCCCACCGCCGCCCCCCTTGATAGAGGTAACAA---------C-CAC------C-A---------------------TA-TCAACATCAA------------------------------------------------CAACAT----------------C-TACAAAA------------------AC---AACAAC------TACAA------CAACAA----CAGCC-------------A---------------------------------ACTAGCACACTGAGAA----C------------A-ACAA---------------------------------------------------AAAATTATATGAAATTCCTTTT---TTTTATTT-------------------ATGTATATA--------TATTTACTACA------CAAC--------------------------------------CAACAA-C--------------------------------------------------AACAA---------------------------------------GAA----CAACAACCGACAAAA-AA-GTCTAGTGATGAGGACCCATAACGGGACA
droVir3 scaffold_13047:6997172-6997443 + dvi_15779 TATCATCTATGGGCAGTTCCACTAGCCCGCCA---------CTGCTCGAGGTAACAA---------C-AAC------A-CCATCACTATCAA---------CA-ACAACAAGAA------------------------------------------------CAA----------------CAAC-AACAAC------------------------------------AAAAA---CAACAACCATACACAT-----------------------------------------TGAGTGT----------------------------------------CA--CTTAATAAC---------------------------AAGAACTA-C-AAAATTAAATGAAA------ATATATATTATTT-------------------ATGTACATATATTTATATATATATTTCAACGAGCTACACATAC----------------------------------ATATA-CA--------TAGAG---------TAA----A-------------------TGCAA----------------------------------------------CAAGAACTGACAGCA--A---CAAGA-GTGAGGACGCATAAAGGGTCA
droMoj3 scaffold_6540:2882898-2883152 + dmo_1779 TCTCATCGATGGGCAGCTCTGCCAGCCCGCCG---------CTGTTCGAGGTAACAA---------C-AAC------A-A---------------------CC-ACAACAAGAA------------------------------------------------CAA----------------CACT-GCCAAAA---------------------------------------ACAACAACAACAACACACAT-----------------------------------------TTGGTGC-CACTTAACA------------------------------------------------------------AAT-------AGGAACAA-CCAAAATTATATGAAA------AT---ATATATTCCCT----------------TTGTATATAAATACATATATATATTACA------TACA--TAC---------------------------------ATGTAT--A------TAGAGAGAG--T--GATAC----A-------------------CGCAG----------------------------------------------CTAAAACTGACAGCA--A---CAAGA-GTGAGGACGTC------CACA
droGri2 scaffold_14830:2871378-2871643 + TATCATCCATGGGCAGCTCCAACAGTCCGCCA---------CTGCTCGAGGTAACAA---------A-CAA--------A---------------------CA-AGAACAAACAA----------------------------------------------ACAACTA-CAACAATAACCACACTCAACAAAA---AT------------------ATCAATA---ACAACAACA------ACAA----CA----------------------A-CA----ACAACA--------AGAAC-CA---------------------------------C--------------------------------------------------A-CCAAAATTAAATCAAA------TTATATATTATTT-------------------AT------G--------TACATACCAGC------CACACAAATACATACC--------------------------TAAAAAGAC--------ATGTGC-ATT--TGTAC----A-------------------TGCAG----------------------------------------------CAACAACTGACAGCA--A---CAAGA-GTGAGGACGCAT---AAGGGG
dp5 2:28713982-28714281 - dps_855 TCTCCTCGATGGGAAGCTCGGCCAGTCCGCCG------CCCATGTTAGAGGTAACAG---------C-CAA------C-A-----------------A---CA-ACAACAACA------------------------------------------------------A----------CAACAAC----AA-----------------------ACAGCAATA---ACAACAACA------AC---AAACAGCT-------------A-------------------------------C-AACAATACACTGAAAA-----------------A-CCAA---------------------------------------------------AAAATTAAATCAAA------TT---TATTATTTCATAAA--------------TGT--ATG--------TATATAGTACA------CACACATACACATACACGCGAAAAAAGAAGAAAGAATGAAAA---------AAAAGTAGATGAGGA--AC-A-GCC-A--ACAACAATAACAACAACAACAACAA---------------------------------------GAGCAGC-----AATGACAGCAGAA---CCAGA-GTGAGGACA------------
droPer2 scaffold_6:4045886-4046176 - TCTCCTCGATGGGAAGCTCGGCCAGTCCGCCG------CCCATGTTAGAGGTAACAG---------C-CAA------C-A-----------------A---CA-ACAACAACA-----------------------------------------------------------------------------A-----------------------ACAGCAATA---ACAACAACA------AC---AAACAGCT-------------A-------------------------------C-AACAATACACTGAAAA-----------------A-CCAA---------------------------------------------------AAAATTAAATCAAA------TT---TATTATTTCATAAA--------------TGT--ATG--------TATATAGTACA------CACACACACACATACACGCGAAAAAAGAAGAAAGAATGAAAA---------AAAAGAAGATGAGGA--AC-A-GCC-A--ACAACAATAACAGCAACAACAACAA---------------------------------------GAGCAGC-----AATGACAGCAGAA---CCAGA-GTGAGGACA------------
droAna3 scaffold_13340:11997538-11997749 + dan_3038 TCTCGTCGATGGGCAGCTCAGCGAGTCCACCA------CCCCTGCTTGAGGTAACAA---------C-AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCT-------------AAAAAAA-AA----ACAACA---AAATCAG--CAAAAATTACACTGAAAG----CT------------A----CA--CACAGAA------------------------------------G-CAGAAACAGAAA-----------------------CAT----------------CT------G--------TATATAATACA------CTTA--------------------------------------ACAA------AAATTAGCGAAGGA--AG-A-GCC----A-------------------AACAA----------------------------------------------AAACAACTGACAGCA--G---CAACA-GTGAGGACACTT-----GACT
droBip1 scf7180000396691:885761-885992 + TCTCGTCGATGGGCAGCTCAGCGAGTCCACCA------CCCCTGCTTGAGGTAACAA---------C-AAC------A----------------------------------------------------------------------------------------------------------------------------------------------------------A------AAACAA----CAGCT-------------A-ACCA----------------------------AAAATTACACTGAGAG----CTCA----------A----CA--CACAGTAAC--------------AGAAAC-------AGGAGACA-A--TGTTTGAATCAAA------AA---TATTATTTCAT----------------CT------G--------TATATAATACA------CTTG--------------------------------------CCAA-----AAAATTATCAAAGGA--AG-A-GCC----A-------------------AACAA----------------------------------------------AAACAACTGACAGCA--A---CCAGA-GTGAGGACACTT-----GACT
droKik1 scf7180000302809:587286-587575 + TCTCTTCGATGGGCAGCTCGGCCAGCCCGCCG------CCCCTGCTAGAGGTAACAG---------C-AAC------A-A---------------------CA-ACAACAACC------------------------------------------------------A----------------C-A---AGA------------------ACAACAGCTATT---ACAGCAACA------AC---------------------------------AAGCA------------GTAAAAC-AACATTACACTGAGAG------------------A----CA--CACAAAGGGAGCAGCAAAAAAAA----A-------AACGAGAAA-A-AGAATTGAATTAAA------TT---TATTATTTCAT----------------ATGTATATA--------TATGTAATACA------CACA--------------------------------------AAGAAA-AA--------AGGAGGA--AG-A-ACC-A--A-------AACAACAACAACAGCAA----------------------------------------------GAATAACTGACAGCA--T---CAAGA-GTGAGGACACCA-----GACA
droFic1 scf7180000453800:195959-196291 - TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCTTGCTAGAGGTAACAT---------C-ATC------A-A---------------------CA-ACAACAACAA---------CAATAACAGCCACCACAGCAAACAACTTCAGAAAATAAACAACTT----------------G-AACAACA---AG------------------CAAAAA---------------------AA----CAGCCAACAACCAGCCTCTGAACAA-CAAACA------------TTAGAGC-AACATTACACTCAGGG----------------C-A----CA--CACAA------------------AGAAAC-------AGGAGCCAACGTGAATTGAATCGAA------TT---TATTATTTTACACA------------CAT------G--------TATATAGTACA------CGCA--------------------------------------GAGAAA-TG--------GGAAGGACTT--CATCCCAAAA-------------------AGCCA----------------------------------------------GAACAACTGACAGCA--A---CAAGA-GTGAGGAGACCA---GAGACA
droEle1 scf7180000491008:2553553-2553848 + TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAAAAACCAGAGCAAC-CAC------C-A---------------------CA-ACAACTTCAA-------------------------------------------ACAAACAACTT----------------T-AACAACA---------------------------------------ACAACAACAACAA----CAGCC-------------TGAATAA-CA----ACAACA---TTATCAGAGC-AAACTTACACTAGGG-------------------A----CA--TGCCAAAAC------------------AGAAGCAGAAGAAGCAA-CTGAAATTGAATCAAA------TT---TATTATTTTATACA------------AAT------G--------TATATAGTACA------CACG--------------------------------------GAAAAA-TA--------AGGA---------ATCC----A-------------------AGCCA----------------------------------------------AAACAACTGACAGCA-AA---CAGGA-GTGGG-ATACCA---GAGACA
droRho1 scf7180000777406:2617-2912 - TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAAAATCCAGAGCAAC-TAC------C-A---------------------CA-ACAACTTCAA-------------------------------------------ACAAACAACTT----------------T-AACAACA---AC------------------AACAATA---A---CAA------CAACAA----CAGCC-------------TGATCAA-CA----ACAACAACATCATCAGAGC-AACATTTCACTAGGC-------------------A----CA--CACCAAA------------------------------------A-CTGAAATTGAATCAAA------TT---TATTATTTCACACA------------AAT------G--------TATATAATACA------CACG--------------------------------------AAGAAA-TA------AGGGGAGGT--TG-AACCA----A-------------------AGCCA----------------------------------------------AAACAACTGACAGCA-AA---CAGGA-GTGAGGACACCA---GAGACA
droBia1 scf7180000302113:3691286-3691581 + TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------T-CAC------C-A-----------------C---CA-ACAACTTCAA-------------------------------------------TCAAACAACTAACAACTATAACAACTTT-AACAACA---------------------------------------ACAACATCAACAA----CAGCC-------------TGAAGTG-CA-ACA------------TCAGAGA-CATATTACACTGAACA------CCAC------------A---------------------------A------------------AA-CCGAAATTG-----AA------TT---TATTATTTCATACATACGATATTACATAT------G--------TATATAGTACA------CACG--------------------------------------GAGAAATTG--------GGGAGGATTTCGCATCC---GA-------------------AGCCA----------------------------------------------AAACAACTGACAGCA--A---CAAGA-GTGAGGACGCCG---GGGACA
droTak1 scf7180000415417:665021-665299 - TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------TCCAC------C-A---------------------CAAACAACTTGAAAACAACAAT----------------------------------AAGAACAACTT----------------T-ATCAACAACAACAACAACCACATCATCAACAAC---------AATAA------TAACAA----CAGCC-------------TGAATAA-CA----ACAACA---A-ATCAGAGC-CACACCACACT---------------------------------------------------------------------------A-CAGAAATTGA-----A------TT---TATTATTTCATAC--------------AT------G--------TATATAGTACA------CACG--------------------------------------AAGAAAATG--------GGGAGGATTT--CATCC---GA-------------------AGCCA----------------------------------------------AAACAACTGACAGCA--A---CAAGA-GTGGGG---------------
droEug1 scf7180000409246:61141-61423 - TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------T-AACAGCCATCACCACCACCATCACCAACAACAACA-ACAACTTGAAA----------------------------------------------ACAACTT----------------T-AGCAACA------------------------------------------------AC---AAACAGCC-------------TGAACAATCTAACA---------T--TCTAAGC-AACATTACACTGAGCGA----------------------CA--CAATACAACAACAACACACACAC----A-------CAGGAGATA-CAGAAA-------------------------------T----------------AT------G--------TATATAGTACA------CATG--------------------------------------AAGAAA-CG--------GGGAGGATTT--CATCC----A-------------------AAAAACA--------------------------------------------GAACAACTGACAGCA--A---CAAGA-GTGAGGACA------------
dm3 chr3R:13715053-13715360 - TCTCGTCCATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------C-CAC------C-A---------------------CA-ACAACTTGAAA----------------------------------------------ACAACTT----------------C-AACAACA---AC------------------AACAACAACAACAACAA------CAACAA----CAGCC-------------TGAACAA-CAAACA------------TCAGAGC-AACACTACACTGATCGAAAGCACCATATAGGAC-A----CATACACA-------------------AGAAACAAGCTTCGGGAGTTA-CAGAAATCGAATCAAT------TT---TATTATTTCAT----------------AT------G--------TATATAGTACA------CATC--------------------------------------GAGAAA-CG--------GGGAGG-TCT--CATTC----A-------------------AGCCA----------------------------------------------AAACAACTGACAGCA--ACAACAAGA-GCGAGAGGACC----------
droSim2 x:18373663-18373947 + TCTCGTCCATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------C-CAC------C-C---------------------CA-ACAACTTGAAA----------------------------------------------ACAACTT----------------C-AACAACA------------------------------------------------ACAA----CAGCC-------------TGAACAA-CAAACA------------TCAGAGC-AACACTTCACTGAGCGAAAGCACCACATAGGAC-A----CA--CACA-------------------AGAAACAAGCATCGGGAGTTA-CAGAAACCGAATCAAA------TT---TATTATTTCAT----------------AT------G--------TATATAGTACA------CATC--------------------------------------GTGAAA-CG--------GGGAGG-TCT--CATCC----A-------------------AACCA----------------------------------------------AAACAACTGACAGCA--ACAACAAGA-GCGAGAAGACC----------
droSec2 scaffold_12:439296-439574 + TCTCGTCCATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------C-CAC------C-A---------------------CA-ACAACTTGAAA----------------------------------------------ACAACTT----------------C-AA------------------------------------------------------CAA----CAGCC-------------TGAACAA-CAAACA------------TCAGAGA-AACACTACACTGAGCGAAAGCACCACATAGGAC-A----CA--CACA-------------------AGAAACAAGCTTCGGGAGTTA-CAGAAACCGAATCAAA------TT---TATTATTTCAT----------------TT------G--------TATATAGTACA------CATC--------------------------------------GAGAAA-CG--------GGGAGG-TCT--CATCC----A-------------------AGCCA----------------------------------------------AAACAACTGACAGCA--ACAACAAGA-GCGAGGAGACC----------
droYak3 4:10605-10743 - AT-----------------------------------------------------AG------CAAC-AAC------A-A---------------------CA-ACAACAACAA------------------------------------------------CAA-------------------C----AACA---ACAACAAC------------AACAAC------AACAA------CAACAACAA-CA----------------------A-CA----ACAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACACTATGCTCAGTACCGAGAGCTGTGTACATTTCTG--------CTGAATCAACAACA--A---CTAAA-GCAA-----------------
droEre2 scaffold_4770:7909933-7910242 + der_573 TCTCGTCCATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------C-CAC------C-A---------------------CA-ACAACTTGAAA----------------------------------------------ACAACTT----------------C-AACAACA---AC------------------AACAATA---ACAACAA------CAACAA----CAGCC-------------TGAACAA-AAAACA------------TCAGAGC-AACACTACACTGAGCGAAAGCGTCACATAGGAC-A----CA--CACA-------------------AGAAACAAGCCTGAGGAGTCA-CAGATACTGAATCAAA------CG---TATTATTTCAT----------------AT------G--------TATATATTACA------CATC--------------------------------------GAGAAA-CG--------GGGAGG-TCT--CATCC----A-------------------AGCCA----------------------------------------------AAACAACTGACAGCA--ACAACAAGA-GCGAGGAGACCA---ACAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TATCATCAATGGGAAGCTCAGCCAGCCCACCGCCGCCCCCCTTGATAGAGGTAACAA---------C-CAC------C-A---------------------TA-TCAACATCAA------------------------------------------------CAACAT----------------C-TACAAAA------------------AC---AACAAC------TACAA------CAACAA----CAGCC-------------A---------------------------------ACTAGCACACTGAGAA----C------------A-ACAA---------------------------------------------------AAAATTATATGAAATTCCTTTT---TTTTATTT-------------------ATGTATATA--------TATTTACTACA------CAAC--------------------------------------CAACAA-C--------------------------------------------------AACAA---------------------------------------GAA----CAACAACCGACAAAA-AA-GTCTAGTGATGAGGACCCATAACGGGACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TATCATCTATGGGCAGTTCCACTAGCCCGCCA---------CTGCTCGAGGTAACAA---------C-AAC------A-CCATCACTATCAA---------CA-ACAACAAGAA------------------------------------------------CAA----------------CAAC-AACAAC------------------------------------AAAAA---CAACAACCATACACAT-----------------------------------------TGAGTGT----------------------------------------CA--CTTAATAAC---------------------------AAGAACTA-C-AAAATTAAATGAAA------ATATATATTATTT-------------------ATGTACATATATTTATATATATATTTCAACGAGCTACACATAC----------------------------------ATATA-CA--------TAGAG---------TAA----A-------------------TGCAA----------------------------------------------CAAGAACTGACAGCA--A---CAAGA-GTGAGGACGCATAAAGGGTCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................AACAAGAA------------------------------------------------CAA----------------CAAC-AACAAC------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.306003000000000000003000000000000000000000000000000000000000000000
..........................................................................................................AACAAGAA------------------------------------------------CAA----------------CAAC-AACAAC------------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.306006000000000000000000000000000000000000000000000000000000000000
...........................................................................................................ACAAGAA------------------------------------------------CAA----------------CAAC-AACAAC------------------------------------AAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.132001000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................CAA----------------CAAC-AACAAC------------------------------------AAAAA---CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................A------------------------------------------------CAA----------------CAAC-AACAAC------------------------------------AAAAA---........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................AAC-AACAAC------------------------------------AAAAA---CAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................AA----------------CAAC-AACAAC------------------------------------AAAAA---CAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCTCATCGATGGGCAGCTCTGCCAGCCCGCCG---------CTGTTCGAGGTAACAA---------C-AAC------A-A---------------------CC-ACAACAAGAA------------------------------------------------CAA----------------CACT-GCCAAAA---------------------------------------ACAACAACAACAACACACAT-----------------------------------------TTGGTGC-CACTTAACA------------------------------------------------------------AAT-------AGGAACAA-CCAAAATTATATGAAA------AT---ATATATTCCCT----------------TTGTATATAAATACATATATATATTACA------TACA--TAC---------------------------------ATGTAT--A------TAGAGAGAG--T--GATAC----A-------------------CGCAG----------------------------------------------CTAAAACTGACAGCA--A---CAAGA-GTGAGGACGTC------CACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--A---CAAGA-GTGAGGACGTC------....1911.001000100
droGri2
TATCATCCATGGGCAGCTCCAACAGTCCGCCA---------CTGCTCGAGGTAACAA---------A-CAA--------A---------------------CA-AGAACAAACAA----------------------------------------------ACAACTA-CAACAATAACCACACTCAACAAAA---AT------------------ATCAATA---ACAACAACA------ACAA----CA----------------------A-CA----ACAACA--------AGAAC-CA---------------------------------C--------------------------------------------------A-CCAAAATTAAATCAAA------TTATATATTATTT-------------------AT------G--------TACATACCAGC------CACACAAATACATACC--------------------------TAAAAAGAC--------ATGTGC-ATT--TGTAC----A-------------------TGCAG----------------------------------------------CAACAACTGACAGCA--A---CAAGA-GTGAGGACGCAT---AAGGGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
TCTCCTCGATGGGAAGCTCGGCCAGTCCGCCG------CCCATGTTAGAGGTAACAG---------C-CAA------C-A-----------------A---CA-ACAACAACA------------------------------------------------------A----------CAACAAC----AA-----------------------ACAGCAATA---ACAACAACA------AC---AAACAGCT-------------A-------------------------------C-AACAATACACTGAAAA-----------------A-CCAA---------------------------------------------------AAAATTAAATCAAA------TT---TATTATTTCATAAA--------------TGT--ATG--------TATATAGTACA------CACACATACACATACACGCGAAAAAAGAAGAAAGAATGAAAA---------AAAAGTAGATGAGGA--AC-A-GCC-A--ACAACAATAACAACAACAACAACAA---------------------------------------GAGCAGC-----AATGACAGCAGAA---CCAGA-GTGAGGACA------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCTCCTCGATGGGAAGCTCGGCCAGTCCGCCG------CCCATGTTAGAGGTAACAG---------C-CAA------C-A-----------------A---CA-ACAACAACA-----------------------------------------------------------------------------A-----------------------ACAGCAATA---ACAACAACA------AC---AAACAGCT-------------A-------------------------------C-AACAATACACTGAAAA-----------------A-CCAA---------------------------------------------------AAAATTAAATCAAA------TT---TATTATTTCATAAA--------------TGT--ATG--------TATATAGTACA------CACACACACACATACACGCGAAAAAAGAAGAAAGAATGAAAA---------AAAAGAAGATGAGGA--AC-A-GCC-A--ACAACAATAACAGCAACAACAACAA---------------------------------------GAGCAGC-----AATGACAGCAGAA---CCAGA-GTGAGGACA------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TCTCGTCGATGGGCAGCTCAGCGAGTCCACCA------CCCCTGCTTGAGGTAACAA---------C-AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCT-------------AAAAAAA-AA----ACAACA---AAATCAG--CAAAAATTACACTGAAAG----CT------------A----CA--CACAGAA------------------------------------G-CAGAAACAGAAA-----------------------CAT----------------CT------G--------TATATAATACA------CTTA--------------------------------------ACAA------AAATTAGCGAAGGA--AG-A-GCC----A-------------------AACAA----------------------------------------------AAACAACTGACAGCA--G---CAACA-GTGAGGACACTT-----GACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................C-AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCT-------------AAAAAAA-AA----AC.........................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
TCTCGTCGATGGGCAGCTCAGCGAGTCCACCA------CCCCTGCTTGAGGTAACAA---------C-AAC------A----------------------------------------------------------------------------------------------------------------------------------------------------------A------AAACAA----CAGCT-------------A-ACCA----------------------------AAAATTACACTGAGAG----CTCA----------A----CA--CACAGTAAC--------------AGAAAC-------AGGAGACA-A--TGTTTGAATCAAA------AA---TATTATTTCAT----------------CT------G--------TATATAATACA------CTTG--------------------------------------CCAA-----AAAATTATCAAAGGA--AG-A-GCC----A-------------------AACAA----------------------------------------------AAACAACTGACAGCA--A---CCAGA-GTGAGGACACTT-----GACTSizeHit CountTotal NormTotal
No Reads
droKik1
TCTCTTCGATGGGCAGCTCGGCCAGCCCGCCG------CCCCTGCTAGAGGTAACAG---------C-AAC------A-A---------------------CA-ACAACAACC------------------------------------------------------A----------------C-A---AGA------------------ACAACAGCTATT---ACAGCAACA------AC---------------------------------AAGCA------------GTAAAAC-AACATTACACTGAGAG------------------A----CA--CACAAAGGGAGCAGCAAAAAAAA----A-------AACGAGAAA-A-AGAATTGAATTAAA------TT---TATTATTTCAT----------------ATGTATATA--------TATGTAATACA------CACA--------------------------------------AAGAAA-AA--------AGGAGGA--AG-A-ACC-A--A-------AACAACAACAACAGCAA----------------------------------------------GAATAACTGACAGCA--T---CAAGA-GTGAGGACACCA-----GACASizeHit CountTotal NormTotal
No Reads
droFic1
TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCTTGCTAGAGGTAACAT---------C-ATC------A-A---------------------CA-ACAACAACAA---------CAATAACAGCCACCACAGCAAACAACTTCAGAAAATAAACAACTT----------------G-AACAACA---AG------------------CAAAAA---------------------AA----CAGCCAACAACCAGCCTCTGAACAA-CAAACA------------TTAGAGC-AACATTACACTCAGGG----------------C-A----CA--CACAA------------------AGAAAC-------AGGAGCCAACGTGAATTGAATCGAA------TT---TATTATTTTACACA------------CAT------G--------TATATAGTACA------CGCA--------------------------------------GAGAAA-TG--------GGAAGGACTT--CATCCCAAAA-------------------AGCCA----------------------------------------------GAACAACTGACAGCA--A---CAAGA-GTGAGGAGACCA---GAGACASizeHit CountTotal NormTotal
No Reads
droEle1
TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAAAAACCAGAGCAAC-CAC------C-A---------------------CA-ACAACTTCAA-------------------------------------------ACAAACAACTT----------------T-AACAACA---------------------------------------ACAACAACAACAA----CAGCC-------------TGAATAA-CA----ACAACA---TTATCAGAGC-AAACTTACACTAGGG-------------------A----CA--TGCCAAAAC------------------AGAAGCAGAAGAAGCAA-CTGAAATTGAATCAAA------TT---TATTATTTTATACA------------AAT------G--------TATATAGTACA------CACG--------------------------------------GAAAAA-TA--------AGGA---------ATCC----A-------------------AGCCA----------------------------------------------AAACAACTGACAGCA-AA---CAGGA-GTGGG-ATACCA---GAGACASizeHit CountTotal NormTotal
No Reads
droRho1
TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAAAATCCAGAGCAAC-TAC------C-A---------------------CA-ACAACTTCAA-------------------------------------------ACAAACAACTT----------------T-AACAACA---AC------------------AACAATA---A---CAA------CAACAA----CAGCC-------------TGATCAA-CA----ACAACAACATCATCAGAGC-AACATTTCACTAGGC-------------------A----CA--CACCAAA------------------------------------A-CTGAAATTGAATCAAA------TT---TATTATTTCACACA------------AAT------G--------TATATAATACA------CACG--------------------------------------AAGAAA-TA------AGGGGAGGT--TG-AACCA----A-------------------AGCCA----------------------------------------------AAACAACTGACAGCA-AA---CAGGA-GTGAGGACACCA---GAGACASizeHit CountTotal NormTotal
No Reads
droBia1
TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------T-CAC------C-A-----------------C---CA-ACAACTTCAA-------------------------------------------TCAAACAACTAACAACTATAACAACTTT-AACAACA---------------------------------------ACAACATCAACAA----CAGCC-------------TGAAGTG-CA-ACA------------TCAGAGA-CATATTACACTGAACA------CCAC------------A---------------------------A------------------AA-CCGAAATTG-----AA------TT---TATTATTTCATACATACGATATTACATAT------G--------TATATAGTACA------CACG--------------------------------------GAGAAATTG--------GGGAGGATTTCGCATCC---GA-------------------AGCCA----------------------------------------------AAACAACTGACAGCA--A---CAAGA-GTGAGGACGCCG---GGGACASizeHit CountTotal NormTotal
No Reads
droTak1
TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------TCCAC------C-A---------------------CAAACAACTTGAAAACAACAAT----------------------------------AAGAACAACTT----------------T-ATCAACAACAACAACAACCACATCATCAACAAC---------AATAA------TAACAA----CAGCC-------------TGAATAA-CA----ACAACA---A-ATCAGAGC-CACACCACACT---------------------------------------------------------------------------A-CAGAAATTGA-----A------TT---TATTATTTCATAC--------------AT------G--------TATATAGTACA------CACG--------------------------------------AAGAAAATG--------GGGAGGATTT--CATCC---GA-------------------AGCCA----------------------------------------------AAACAACTGACAGCA--A---CAAGA-GTGGGG---------------SizeHit CountTotal NormTotal
No Reads
droEug1
TCTCGTCGATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------T-AACAGCCATCACCACCACCATCACCAACAACAACA-ACAACTTGAAA----------------------------------------------ACAACTT----------------T-AGCAACA------------------------------------------------AC---AAACAGCC-------------TGAACAATCTAACA---------T--TCTAAGC-AACATTACACTGAGCGA----------------------CA--CAATACAACAACAACACACACAC----A-------CAGGAGATA-CAGAAA-------------------------------T----------------AT------G--------TATATAGTACA------CATG--------------------------------------AAGAAA-CG--------GGGAGGATTT--CATCC----A-------------------AAAAACA--------------------------------------------GAACAACTGACAGCA--A---CAAGA-GTGAGGACA------------SizeHit CountTotal NormTotal
No Reads
dm3
TCTCGTCCATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------C-CAC------C-A---------------------CA-ACAACTTGAAA----------------------------------------------ACAACTT----------------C-AACAACA---AC------------------AACAACAACAACAACAA------CAACAA----CAGCC-------------TGAACAA-CAAACA------------TCAGAGC-AACACTACACTGATCGAAAGCACCATATAGGAC-A----CATACACA-------------------AGAAACAAGCTTCGGGAGTTA-CAGAAATCGAATCAAT------TT---TATTATTTCAT----------------AT------G--------TATATAGTACA------CATC--------------------------------------GAGAAA-CG--------GGGAGG-TCT--CATTC----A-------------------AGCCA----------------------------------------------AAACAACTGACAGCA--ACAACAAGA-GCGAGAGGACC----------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................A-CAAACA------------TCAGAGC-AACACTACAC.............................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000
.........................TCCGCCG------CCCCTGCTAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................AC-A----CATACACA-------------------AGAAACA..............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................C-AACAACA---AC------------------AACAACAACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.851700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AACAACAACAACAACAA------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AACA---AC------------------AACAACAACAACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AACAACA---AC------------------AACAACAACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CA---AC------------------AACAACAACAACAACAA------CAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................C------------------AACAACAACAACAACAA------CAACAA----C..........................................................................................................................................................................................................................................................................................................................................................................................................................................25200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC--------------------------------------GAGAAA-CG--------GGGAGT-A....................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................CA---AC------------------AACAACAACAACAACAA------CAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................C------------------AACAACAACAACAACAA------CAACAA----CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................ACAACAACAACAACAA------CAACAA----...........................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CAACA---AC------------------AACAACAACAACAACAA------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................ACA---AC------------------AACAACAACAACAACAA------CAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................C-AACAACA---AC------------------AACAACAACAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AACAACA---AC------------------AACAACAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................ACA---AC------------------AACAACAACAACAACAA------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CA---AC------------------AACAACAACAACAACAA------CAACAA----CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CAACA---AC------------------AACAACAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CAACA---AC------------------AACAACAACAACAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................C------------------AACAACAACAACAACAA------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AACA---AC------------------AACAACAACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AC------------------AACAACAACAACAACAA------CA...................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AACAACAACAA------CAACAA----CAG........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................CAACA---AC------------------AACAACAACAACAACAA------CA...................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCTCGTCCATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------C-CAC------C-C---------------------CA-ACAACTTGAAA----------------------------------------------ACAACTT----------------C-AACAACA------------------------------------------------ACAA----CAGCC-------------TGAACAA-CAAACA------------TCAGAGC-AACACTTCACTGAGCGAAAGCACCACATAGGAC-A----CA--CACA-------------------AGAAACAAGCATCGGGAGTTA-CAGAAACCGAATCAAA------TT---TATTATTTCAT----------------AT------G--------TATATAGTACA------CATC--------------------------------------GTGAAA-CG--------GGGAGG-TCT--CATCC----A-------------------AACCA----------------------------------------------AAACAACTGACAGCA--ACAACAAGA-GCGAGAAGACC----------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................TGAACAA-CAAACA------------TCAGAGC-AACACTT................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
droSec2
TCTCGTCCATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------C-CAC------C-A---------------------CA-ACAACTTGAAA----------------------------------------------ACAACTT----------------C-AA------------------------------------------------------CAA----CAGCC-------------TGAACAA-CAAACA------------TCAGAGA-AACACTACACTGAGCGAAAGCACCACATAGGAC-A----CA--CACA-------------------AGAAACAAGCTTCGGGAGTTA-CAGAAACCGAATCAAA------TT---TATTATTTCAT----------------TT------G--------TATATAGTACA------CATC--------------------------------------GAGAAA-CG--------GGGAGG-TCT--CATCC----A-------------------AGCCA----------------------------------------------AAACAACTGACAGCA--ACAACAAGA-GCGAGGAGACC----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................ACACTACACTGAGCGAAAG...................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droYak3
AT-----------------------------------------------------AG------CAAC-AAC------A-A---------------------CA-ACAACAACAA------------------------------------------------CAA-------------------C----AACA---ACAACAAC------------AACAAC------AACAA------CAACAACAA-CA----------------------A-CA----ACAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACACTATGCTCAGTACCGAGAGCTGTGTACATTTCTG--------CTGAATCAACAACA--A---CTAAA-GCAA-----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------CTGAATCAACAACA--A---CTAAA-GCA..................25190.5310010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGAGAGCTGTGTACATTTCTG--------C..............................................25200.40800800000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGAGAGCTGTGTACATTTCTG--------CT.............................................26200.20400400000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACACTATGCTCAGTACCGAGAGC.....................................................................27200.20401300000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------CTGAATCAACAACA--A---CTAAA-GC...................24190.16303000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------CTGAATCAACAACA--A---CTAAA-G....................23190.16303000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTACCGAGAGCTGTGTACATTTC.........................................................26200.15303000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACTATGCTCAGTACCGAGAGC.....................................................................25200.10200200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGAGAGCTGTGTACATTTC.........................................................22200.10201100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTCAGTACCGAGAGCTGTGTACAT............................................................28200.10202000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACTATGCTCAGTACCGAGAGCTG...................................................................27200.10201100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGTACATTTCTG--------CTGAATCAAC.....................................26200.10202000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG--------CTGAATCAACAACA--A---CTAA.......................22190.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTG--------CTGAATCAACAACA--A---CTAAA-GC...................27190.05101000000000
..............................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACACTATGCTCAGTACCGAG........................................................................27190.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------CTGAATCAACAACA--A---CTAAA-GC...................23190.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------CTGAATCAACAACA--A---CTAAA-GCA..................24190.05101000000000
.............................................................................................................................................................................................................................................................................................CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACACTATGCTCAGTACCGAG........................................................................28190.05101000000000
..............................................................................................................ACAA------------------------------------------------CAA-------------------C----AACA---ACAACAAC------------AAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
....................................................................................................................................................................A-------------------C----AACA---ACAACAAC------------AACAAC------AAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGAGCTGTGTACATTTC.........................................................21200.05101000000000
..............................................................................................................................................................................................ACA---ACAACAAC------------AACAAC------AACAA------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAGCTGTGTACATTTCTG--------CTGAA..........................................26200.05100100000000
...........................................................................................................ACAACAA------------------------------------------------CAA-------------------C----AACA---ACAACAAC------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGTACCGAGAGCTGTGTACATTTC.........................................................27200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGAGCTGTGTACATTTC.........................................................20200.05101000000000
............................................................................................................................................................................................................................AC------AACAA------CAACAACAA-CA----------------------A-CA----AC.........................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
.....................................................................................................................................................................................................................................ACAA------CAACAACAA-CA----------------------A-CA----ACAAC......................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTACCGAGAGCTGTGTACATTTCT........................................................27200.05100100000000
.........................................................................................................................................................................................................................ACAAC------AACAA------CAACAACAA-CA----------------------A-C................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCAGTACCGAGAGCTGTGTACAT............................................................26200.05101000000000
.......................................................................................................................................................................................................ACAAC------------AACAAC------AACAA------CAACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTGTACATTTCTG--------CTGAATCA.......................................26200.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACACTATGCTCAGTACCGAGA.......................................................................26200.05101000000000
..............................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAACACTATGCTCAGT..............................................................................21200.05101000000000
..........................................................................................................................................................................................................AC------------AACAAC------AACAA------CAACAACAA-C..........................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACACTATGCTCAGTACCGAGAGC.....................................................................26200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGAGAGCTGTGTACATTTCTG--------C..............................................26200.05100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGTGTACATTTCTG--------CTGAATC........................................25200.05101000000000
........................................................................................................ACAACAACAA------------------------------------------------CAA-------------------C----AACA---ACAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
....................................................................................................................................................................................................ACAACAAC------------AACAAC------AACAA------CAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
.................................................................................................................A------------------------------------------------CAA-------------------C----AACA---ACAACAAC------------AACAAC------................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACCGAGAGCTGTGTACATTTCTG--------C..............................................27200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCAGTACCGAGAGCTGTGTACATT...........................................................27200.05101000000000
droEre2
TCTCGTCCATGGGCAGCTCAGCGAGTCCGCCG------CCCCTGCTAGAGGTAACAG---------C-CAC------C-A---------------------CA-ACAACTTGAAA----------------------------------------------ACAACTT----------------C-AACAACA---AC------------------AACAATA---ACAACAA------CAACAA----CAGCC-------------TGAACAA-AAAACA------------TCAGAGC-AACACTACACTGAGCGAAAGCGTCACATAGGAC-A----CA--CACA-------------------AGAAACAAGCCTGAGGAGTCA-CAGATACTGAATCAAA------CG---TATTATTTCAT----------------AT------G--------TATATATTACA------CATC--------------------------------------GAGAAA-CG--------GGGAGG-TCT--CATCC----A-------------------AGCCA----------------------------------------------AAACAACTGACAGCA--ACAACAAGA-GCGAGGAGACCA---ACAACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................C-AACAACA---AC------------------AACAATA---ACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.0610100000

Generated: 05/18/2015 at 04:36 AM