ID:

dwi_2476

 Coordinate:

scf2_1100000004902:4277742-4277892 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.2 -21.0 -20.9

Flybase annnotation

exon [dwil_GLEANR_11513:1]; CDS [Dwil\GK11290-cds]; intron [Dwil\GK11290-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-
mature
  1. scf2_1100000004521:5590180-5590201 -
  2. dwi_2476  scf2_1100000004902:4277787-4277808 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGCGGCAATACTGGCATCCAGAATGGCCCCACGCCGGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAACCGCCTACGGGCAACAATCTTGCCGGTAATCCGAACAATGTGCAACAACAGCAGCAACAACAGCAACAAAATGCACAGCAACAACACCCATCGTCGGCACAGCAGCCGCAACATCAGCCAAGTGTTCCCCAGCCAGCGCCGCCTCCACATCCCT
**************************************************........(((.....(((..........))).....))).........(((.((((.........(((((((....))).....((((((......((..........)).......)))))))))).........)))).)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body		 V119
head
..................................................................................................................................................................................................CACAGCATCCGGACCATCAGC.................................... 21 3 6 1.50 9 7 1 0 1
............................................................................................................................................................................................................................GTTCCCCAGCCAGCGCCGCCT.......... 21 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................GTGTTCCGCAGCGTGCGCCGCCT.......... 23 3 2 0.50 1 1 0 0 0
......................................................................................................................................ATGTGCAACAACAGCAGCAACA............................................................................................... 22 0 2 0.50 1 0 0 1 0
.......................................................................................................................................................................................................................CACGTCTTCCCCATCCAGCG................ 20 3 3 0.33 1 0 1 0 0
.............................CCACGCCGGCTACACAACAA.......................................................................................................................................................................................................... 20 3 7 0.14 1 0 1 0 0
.........................................................................................CGTCCCAAACTCCTACGGG............................................................................................................................................... 19 3 7 0.14 1 0 1 0 0
.................................................................................................................................................................ATCAAAATGCTCAGCAAGAAC..................................................................... 21 3 8 0.13 1 0 0 1 0
..................................................................................................................................................................................................CACAGCATCCGGACCATCAG..................................... 20 3 14 0.07 1 1 0 0 0
...................................................................................................................................................................................................ACAACAGCCGGAACATCAGC.................................... 20 2 18 0.06 1 0 0 1 0
............................................................................................................................................AACAACAGCAGCAACAACAGC.......................................................................................... 21 0 20 0.05 1 1 0 0 0
............................................................................................................................................................................................CGTCGGCACAGGAGAGGC............................................. 18 3 20 0.05 1 0 0 1 0

Anti-sense strand reads

GTCGCCGTTATGACCGTAGGTCTTACCGGGGTGCGGCCGTTGTGTTAGTCCATTATTACCAAGTGATGAGGATCGATTATCAGTTTACGGGAGGGTTGGCGGATGCCCGTTGTTAGAACGGCCATTAGGCTTGTTACACGTTGTTGTCGTCGTTGTTGTCGTTGTTTTACGTGTCGTTGTTGTGGGTAGCAGCCGTGTCGTCGGCGTTGTAGTCGGTTCACAAGGGGTCGGTCGCGGCGGAGGTGTAGGGA
**************************************************........(((.....(((..........))).....))).........(((.((((.........(((((((....))).....((((((......((..........)).......)))))))))).........)))).)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
 M020
head
 V119
head
............AGCTTAGGTCTTGCCGGGG............................................................................................................................................................................................................................ 19 3 7 2.00 14 6 7 0 0 1
.....................................CGTTGTGTTAGTCGAGTATT.................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0
............................................................................................................GTTGCCAGAATGGCCATTAG........................................................................................................................... 20 3 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................CGTGTCGTAGGCCTGGTAGT...................................... 20 3 7 0.86 6 1 0 1 3 1
................................................................................................................................................................................................CCGTGTCGTAGGCCTGGTAGT...................................... 21 3 3 0.67 2 0 0 2 0 0
.............GCTTAGGTCTTGCCGGGG............................................................................................................................................................................................................................ 18 3 20 0.45 9 9 0 0 0 0
.......................................................................................................................................................................................................GTCGGCGTTGTAGTCGGTTT................................ 20 1 3 0.33 1 1 0 0 0 0
....CCGGTATTACCGTAGGTCT.................................................................................................................................................................................................................................... 19 2 6 0.33 2 0 0 0 2 0
..........................................................................................................................................................................................................GGCGTTGTAGTCGGTTTTC.............................. 19 2 8 0.13 1 1 0 0 0 0
...............GAAGGTCGTGCCGGGGTGC......................................................................................................................................................................................................................... 19 3 9 0.11 1 0 1 0 0 0
.............GCTTAGGTCTTGCCGGGGT........................................................................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0
........................................................................................................................................................................................................................................CGGGCCGAAGGTGTAGGG. 18 3 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................GGTTTTGTAGTCGGTTCAGA............................. 20 3 20 0.05 1 1 0 0 0 0
.......TTATAACCGTAGGTCTTAGT................................................................................................................................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004902:4277692-4277942 - dwi_2476 CAGCGGCAATACTGGCATCCAGAATGGCCCCA---CGCCGGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAACCGCCTA---C----------------G------GG---CAA-------CAA----------TCTTGCCGGTAATCCGAACAATGTGCAACAAC-----------------------------------------------------------------------------------------AGCAG--------------------------------------------CAACAACAGCAA---CAAAAT---------------------------GCACA-------------------------------------GCAACAACACCCA---TCGTCGGCACAGCAGCC------------------GCAACA------------TCAGCCAAGTGTTCCC-----------------------------------CA---------GC---------------------------------------CAG------C------------------------G---CCGCCT-----------------CCAC-------------------------ATCCCT
droVir3 scaffold_13047:3247749-3248029 - dvi_15378 CAGCGGCCATCCGGGCGCCCAGAACGGTCCGA---CGCCAGCAACACAATCAGGTAATAATGGTTCAATACTATTAGCTAATAGTCAG----------------------CAGGCGAGTCAGGGTCAGGGCAACAG---CAG--------------------TAGTGCTGTCAATGCAAATCAGCAG---CAGC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------CAACAACAGCAT---CAACTTGCACAGCAGCAGCAGCAG----------------------------------------------------CAGCAACAACAG---ACCGCACAGCAGCACCA---------------------ACA---------------------------G-----------------------------------CAACA------GCAGCAACA---ACAGCAGCAACAGCAGCAACAACAGCCG---C------C------------------------A---CAGCCG-----------------CAAC-------------------------ATGCCC
droMoj3 scaffold_6473:15007739-15007967 + CAGC-----------------------------------AGCAACACCACCAA--------------------------------------------------------------------------------------CAATTGC-----------CACAA-------------------------------CAACAACAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAACAGCAG---CAACAG---------------------------TTGCAGCAGCGCCACAACGTTGCCATATTGCCCAAGTCTACAGCAGCAACAA---------GTG------------------------------------------------------------CCAAATGCCGTGCCAATACCCACCAGCAACAACAG---CAACA------GCAGTAACAACGAC---------AGCA------G------CAACA------------------------------GCAGCAGCCA-----------------GCACATTCCTCAGCCCGCACCGCAGCAACA----T
droGri2 scaffold_15245:11160327-11160573 + CAGC-----------------------------------AGCAACACCATCAC-----------------------------------------------------------------------------------------------------------------------------------------------------CATCAGCAGCAGCAGCACCAGCAGCAACAATCGTCGCTGCATTTTGCTAGCCAGCAACAGTTGCCCACCCAGCACAGCAGCAACTACTTTAGGCCACCCACTGCACCAATCA----------AACA---T---------------CAGCAACAACAGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGA---CATC-----------------------------------------------GCAGCAACACTTCT---------ATCA------G------AAGCAGCAACAGTCGACAAGGCCCAGCATAACACAG---CAACAG-----------------TTGC---------------CCGCAAC---ATCC-T
dp5 2:29212723-29212974 - dps_862 CCG-----------GAGCCCAGAACGGCCCCA---CGCCGACCACACAATCAGGTAATAATGGTTCACTACTCCTAGCCCCTAGTCAAATGCCCCCCCAACCGCC-G---C----------------C------AG---CGGTGGTCGTGGCCAATGCCCAG----------------------------CAGC-----------------------------------------------------------------------------------------AGCAGCAACAG--------------------------------------CAGCAGCAGCAG---CAGAAC---------------------------GTGCA-------------------------------------GCAGCAGCAGCAG---AATGTG------------------------------------------------------------CCA-----------------------CAGCAGCAGCAGCAGCAGGCACCGCAACAGAATCCCC---------AGCAGCAACAGCAGCCG---C------C---GAA------------------T------GTG-----------------CAGC-------------------------ATCTCC
droPer2 scaffold_77:81166-81393 + CAGC-------------AACAACACCA----------------------ACAG-----------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAACAACAACACCAGCAACACCAAC--------------------------------------------------AACACCAACAT--------------------CAGCTTCAACAACAGCATCAACAACACCAA---CAGCAA---------------------------CAGCA-------------------------------------GCAGCAACACCAA---CAACACCAACAGCAGCA------------------GCAACAGCAACACCACCAGCACCAGCAACAGCTT-----------------------------------CA---------TCATCATCATCAGC---------AGCA------G------CAACA------------------------------GCAGCAGCAACAACGTGTTGCAAGCAGTAGC-------------------------CTGCAA
droAna3 scaffold_13340:10624098-10624313 - -----------------CCCAGAACGGACCAA---CACCCGCATCCCAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCGCCCAGCCGTCCG---C-----------------------------------------GAATGCGCAG----------------------------CAGC-----------------------------------------------------------------------------------------AGTTGCAGCAGGC-----------------------------------T---------------CAGGGATCCCAGCAGCAACAGCAGCAGCCAGGATCGCA-------------------------------------ACAGCCACAGCCA---AGTTCGCAGCAGCA---------------------GCAG------------------CAGAATGTGGTG-----------------------------------CA------------------------------------------------------------------------------------G---CAACAG-----------------CCGC-------------------------ATCCGT
droBip1 scf7180000396374:452437-452652 + -----------------CCCAGAACGGACCCA---CACCCGCATCCCAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCGCCCAGCCGTCCG---C-----------------------------------------GAATGCGCAG----------------------------CAGC-----------------------------------------------------------------------------------------AGCTGCAGCAGGC-----------------------------------T---------------CAGGGATCCCAGCAGCAACAGCAGCAGCCAGGATCGCA-------------------------------------ACAGCCACAGCCA---AGCTCGCAGCAGCA---------------------------------------GCAGCAGAATGTGGCG-----------------------------------CA---------GC------------------------------------------------------------------------------AACAG-----------------CCGC-------------------------ATCCAT
droKik1 scf7180000302276:549542-549781 - -----------------CCCAGAACGGACCCG---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCTCCCAACCGCCGG---C----------------G------AG---CGG-------GGCGAGTGCGCAG----------------------------CAGC-----------------------------------------------------------------------------------------AGCAG-----------------------------------------------------------CAGAATGCGCCGCAGCAGCAGCAGCCACCAAGTGCCCA-------------------------------------ACAACAACATCCG---GGCTCCCAGCAGCAGCA------------------GCAG------------------CAAAACGCAGTG-----------------------------------CA---------GCAACAGCACTTGC---------AGCA------G------CA---------------------------------G---CAGCAA-----------------GCGC-------------------------ATCCCC
droFic1 scf7180000453912:1686706-1686957 - --------------GGCCGCAAAACGGACAAA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGAACG---C----------------G------AG---CGG-------TTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCAGCAGAATGCACAGCAGCAGCAGCAGCAACACAGCTCGCA-------------------------------------GCAACAACAG---------TCG---------CA------------------GCAACAGCA------GCCACCGCAAAATGTGTCG-----------------------------------CA---------GC---AACACATAC---------AACA------G------CAACAGCAGCA------------------------A---CAGCAA-----------------TCGC-------------------------ATCCTC
droEle1 scf7180000491080:2493018-2493281 - --------------GGCCCCAGAACGGACCCATCGCGCCCGCATCACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------C------AG---CGG-------GTCGAGTGGGCAG----------------------------CAACAGCAGCAGCAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAACAGCAA---CAGAAT---------------------------GCGCA-------------------------------------GCAGCAACATCAG---GTCGCGCAGCAGCAACAACAGCA---------GCCGCAACA---------GCAGCAGCAGAGTGTGGGG-----------------------------------CA------ACCGCAGCAGCACCTGC---------AGC------------------------A------------------------G---CAGCAA-----------------TCGC-------------------------ATCCTT
droRho1 scf7180000779097:111014-111256 - --------------GGCCCCAGAACGGACCCA---CGCCCGCATCACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AG---TGG-------GTCGAGTGGGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAACAGCAGAAT---------------------------GCACA-------------------------------------GCAGCAACATCAG---GTATCGCAGCAGCAGCA------------------ACAGCAGC------CGCAGCAGCCGAATGTGGCG-----------------------------------CA---------ACAACAGCATTTGC---------AGCA------G------CAGCAGCAACA------------------------G---CAGCAA-----------------TCGC-------------------------ATCCTT
droBia1 scf7180000302075:3552457-3552711 - --------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAGCGCCTGTGTC----------------G------AGTGGTGG-------GTCGAATGGGCAG----------------------------CAGC-----------------------------------------------------------------------------------------AACAGCAGCAG--------------------------------------CAGCAGCAGCAA---CAGAAT---------------------------GCCCA-------------------------------------GCAGCAACATGCG---AGTGCGCAGCAACAGCAACAGCAGCAGCAGACGTCGCA------------------------------G-----------------------------------CA---------GCAACAGCACCTGC---------AACA------G------CAGCAGCAACA------------------------A---CAGCAA-----------------TCGC-------------------------ATCCCC
droTak1 scf7180000415763:230909-231133 - --------------GGCCCCAAAATGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCGTCGC----------------G------AG---TGG-------CTCGAGTGGGCAG----------------------------CAGC-----------------------------------------------------------------------------------------AGCAG-----------------------------------------------------CAA---CAGACG---------------------------TCGCA-------------------------------------ACAGCAACATGTTAGTAACGTG---CAACAACAACA---------GACGCCGCAAC-----------------------------------------------------------------A---------GCAGCAACATTTGC---------AGCA------G------CAACAGCAA------------------------------CCACAG-----------------TCGC-------------------------ATCCTT
droEug1 scf7180000409797:834754-834998 + TA------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AA---TGG-------GTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAG---CAGAAT---------------------------GCTCA-------------------------------------GCAGCAACATCAG---AGCTCGCAACAGCAGCA------------------ACAACAGCAGCAAGCGCAGCAACAGAATGTGGCG-----------------------------------CA---------ACAACAGCATATGC---------AGCA------G------CAACAGC---A------------------------G---CAGCAA-----------------TCGC-------------------------ATCCTT
dm3 chr3R:7201525-7201770 + --------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGACCG---C----------------G------AG---CGG-------GTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAA---CAGAAT---------------------------GCCCA-------------------------------------GCAGCAGCATCAG---GGCTCGCAGCAGCAGCA------------------GCAACAGAATGTGGTGCAGCAGCAGAATGTGGCG-----------------------------------CA---------GCAGCAGCATATGC---------AGCA------G------CAGCAGCAACA------------------------G---CAGCAG-----------------TCGC-------------------------ATCCTT
droSim2 3r:13890806-13891045 - --------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AG---CGG-------TTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAA---CAGAAT---------------------------GCCCA-------------------------------------GCAGCAGCATCAG---GGCTCGCAGCAGCAGCA------------------GCAACAGAATGTGGTGCAGCAGCAAAATGTGGCG-----------------------------------CA---------GCAGCAGCACATGC---------AGCA------G------CAACA------------------------------G---CAGCAG-----------------TCGC-------------------------ACCCCT
droSec2 scaffold_0:14752899-14753138 - --------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AG---CGG-------TTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAA---CAGAAT---------------------------GCCCA-------------------------------------GCAGCAGCATCAG---GGCTCGCAGCAGCAGCA------------------GCAACAGAATGTGGTGCAGCAGCAAAATGTGGCG-----------------------------------CA---------GCAGCAGCACATGC---------AGCA------G------CAACA------------------------------G---CAGCAG-----------------TCGC-------------------------ATCCCT
droYak3 3R:11243402-11243650 + dya_1008 --------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AG---CGG-------GTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAA---CAGAATGCACAGCAGCAGCA----------------------------------------------------------GCAGCATCAG---GGCTCGCAGCAGCA---------------------GCAACAGAATGTGGTGCAGCAGCAGAATGTGGCG-----------------------------------CA---------GCAGCAGCACATGC---------AGCA------G------CAGCAACAACA------------------------G---CAGCAG-----------------TCGC-------------------------ATCCAT
droEre2 scaffold_4770:14411867-14412112 - der_628 --------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AG---CGG-------TTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAGCAA---CAGAAT---------------------------GCCCA-------------------------------------GCAGCAGCATCAG---GCCTCGCAGCAGCAGCA------------------GCAACAGAATGTGGTGCAGCAGCAGAATGTAGCA-----------------------------------CA---------GCAGCAGCACATGC---------AGCA------G------CAGCAACAACA------------------------G---CAGCAA-----------------TCGC-------------------------ATCCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CAGCGGCAATACTGGCATCCAGAATGGCCCCA---CGCCGGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAACCGCCTA---C----------------G------GG---CAA-------CAA----------TCTTGCCGGTAATCCGAACAATGTGCAACAAC-----------------------------------------------------------------------------------------AGCAG--------------------------------------------CAACAACAGCAA---CAAAAT---------------------------GCACA-------------------------------------GCAACAACACCCA---TCGTCGGCACAGCAGCC------------------GCAACA------------TCAGCCAAGTGTTCCC-----------------------------------CA---------GC---------------------------------------CAG------C------------------------G---CCGCCT-----------------CCAC-------------------------ATCCCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCC-----------------------------------CA---------GC---------------------------------------CAG------C------------------------G---CCGCCT-----------------...................................2111.00100010
......................................................................................................................................................................................ATGTGCAACAAC-----------------------------------------------------------------------------------------AGCAG--------------------------------------------CAACA.................................................................................................................................................................................................................................................................................................................................................................2220.50100100
............................................................................................................................................................................................AACAAC-----------------------------------------------------------------------------------------AGCAG--------------------------------------------CAACAACAGC............................................................................................................................................................................................................................................................................................................................................................21200.05100010
droVir3
CAGCGGCCATCCGGGCGCCCAGAACGGTCCGA---CGCCAGCAACACAATCAGGTAATAATGGTTCAATACTATTAGCTAATAGTCAG----------------------CAGGCGAGTCAGGGTCAGGGCAACAG---CAG--------------------TAGTGCTGTCAATGCAAATCAGCAG---CAGC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------CAACAACAGCAT---CAACTTGCACAGCAGCAGCAGCAG----------------------------------------------------CAGCAACAACAG---ACCGCACAGCAGCACCA---------------------ACA---------------------------G-----------------------------------CAACA------GCAGCAACA---ACAGCAGCAACAGCAGCAACAACAGCCG---C------C------------------------A---CAGCCG-----------------CAAC-------------------------ATGCCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................GC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------CAACAACAGCAT---CA.....................................................................................................................................................................................................................................................................................................................................................2430.331001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAACAACAGCC..................................................................................................2140.251001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAG----------------------------------------------------CAGCAAC....................................................................................................................................................................................................................................................................20200.204004000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---------------------ACA---------------------------G-----------------------------------CAACA------GCAGCAACA---.............................................................................................................................21100.101000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---ACAGCAGCAACAGCAGCAACAAC......................................................................................................28130.081000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TGCACAGCAGCAGCAGCAG----------------------------------------------------C..........................................................................................................................................................................................................................................................................20190.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---------------------ACA---------------------------G-----------------------------------CAACA------GCAGCAC..................................................................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................GC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------CAACAACAGC............................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................GCAG---CAGC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------CAACAAC...............................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------G-----------------------------------CAACA------GCAGCAACA---ACAGCAGC.....................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------ACA---------------------------G-----------------------------------CAACA------GCAGCAACA---.............................................................................................................................20200.051000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................ATCAGCAG---CAGC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------CAA...................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---ACAGCAGCAACAGCAGCA...........................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG----------------------------------------------------CAGCAACAACA................................................................................................................................................................................................................................................................20200.051000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................AGCAG---CAGC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------CAACAACAGCA...........................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ATCAGCAG---CAGC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................21200.051000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---ACAGCAGCAACAGC...............................................................................................................18200.051000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CAGCAG---CAGC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------CA....................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................GCAG---CAGC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------CAACA.................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------GCAGCAACA---ACAGCAGC.....................................................................................................................19200.051000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................ATCAGCAG---CAGC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------CAACA.................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AG---CAGC-----------------------------------------------------------------------------------------AGCAGCAA-----------------------------------------CAACAACAGCA...........................................................................................................................................................................................................................................................................................................................................................25200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
CAGC-----------------------------------AGCAACACCACCAA--------------------------------------------------------------------------------------CAATTGC-----------CACAA-------------------------------CAACAACAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAACAGCAG---CAACAG---------------------------TTGCAGCAGCGCCACAACGTTGCCATATTGCCCAAGTCTACAGCAGCAACAA---------GTG------------------------------------------------------------CCAAATGCCGTGCCAATACCCACCAGCAACAACAG---CAACA------GCAGTAACAACGAC---------AGCA------G------CAACA------------------------------GCAGCAGCCA-----------------GCACATTCCTCAGCCCGCACCGCAGCAACA----TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................AACACCACCAA--------------------------------------------------------------------------------------CAATTGC-----------CACAA-------------------------------CA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
....................................................A--------------------------------------------------------------------------------------CAATTGC-----------CACAA-------------------------------CAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.........................................................................................................................................................................................................ACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAACA..............................................................................................................................................................................................................................................................................................................................................................21200.408800000
................................................................................................................................................................................................................CAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAACAGCAG---CAAC...................................................................................................................................................................................................................................................................................................................................................22200.102000020
........................................................................................................................................................................................................AACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAACA..............................................................................................................................................................................................................................................................................................................................................................22200.102002000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAG---CAACA------GCAG.....................................................................................................................................21200.102200000
...............................................................................................................................................................................................................GCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAACAGCAG---CA.....................................................................................................................................................................................................................................................................................................................................................21200.102200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAACAACAG---CAAC................................................................................................................................................19160.061000010
...............................................................................................................................................................................................................................................................................................................................................CAACAGCAG---CAACAG---------------------------TTGCA.................................................................................................................................................................................................................................................................................................................20160.061100000
..................................................................................................................................................................................................AACAACAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................21200.051000010
......................................................................................................................................................................................................ACAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGC..................................................................................................................................................................................................................................................................................................................................................................20200.051000010
......................................................................................................................................................................................................ACAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAACA..............................................................................................................................................................................................................................................................................................................................................................24200.051000010
....................................................................................................................................................................................................CAACAACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................19200.051000010
..............................................................................................................................................................................................................AGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAACAGCA...........................................................................................................................................................................................................................................................................................................................................................19200.051100000
........................................................................................................................................................................................................AACAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAAC...............................................................................................................................................................................................................................................................................................................................................................21200.051010000
...................................................................................................................................................................................................................CAA----------------------------------------------------------------------------------------------------------------------CAGCAACAGCAG---CAACAG---------------------------......................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
CAGC-----------------------------------AGCAACACCATCAC-----------------------------------------------------------------------------------------------------------------------------------------------------CATCAGCAGCAGCAGCACCAGCAGCAACAATCGTCGCTGCATTTTGCTAGCCAGCAACAGTTGCCCACCCAGCACAGCAGCAACTACTTTAGGCCACCCACTGCACCAATCA----------AACA---T---------------CAGCAACAACAGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGA---CATC-----------------------------------------------GCAGCAACACTTCT---------ATCA------G------AAGCAGCAACAGTCGACAAGGCCCAGCATAACACAG---CAACAG-----------------TTGC---------------CCGCAAC---ATCC-TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................CAC-----------------------------------------------------------------------------------------------------------------------------------------------------CATCAGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05110
................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------GCAGCAG...................................................................................................................................................................................................22200.05110
................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCA-------------------------------------------------------------------------------------------------------------------------GCAGCAGCA.................................................................................................................................................................................................24200.05110
dp5
CCG-----------GAGCCCAGAACGGCCCCA---CGCCGACCACACAATCAGGTAATAATGGTTCACTACTCCTAGCCCCTAGTCAAATGCCCCCCCAACCGCC-G---C----------------C------AG---CGGTGGTCGTGGCCAATGCCCAG----------------------------CAGC-----------------------------------------------------------------------------------------AGCAGCAACAG--------------------------------------CAGCAGCAGCAG---CAGAAC---------------------------GTGCA-------------------------------------GCAGCAGCAGCAG---AATGTG------------------------------------------------------------CCA-----------------------CAGCAGCAGCAGCAGCAGGCACCGCAACAGAATCCCC---------AGCAGCAACAGCAGCCG---C------C---GAA------------------T------GTG-----------------CAGC-------------------------ATCTCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................GCCCAG----------------------------CAGC-----------------------------------------------------------------------------------------AGCAGCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................19180.1120000200000
................................................................................................................................................................................................GC-----------------------------------------------------------------------------------------AGCAGCAACAG--------------------------------------CAGCAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
droPer2
CAGC-------------AACAACACCA----------------------ACAG-----------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAACAACAACACCAGCAACACCAAC--------------------------------------------------AACACCAACAT--------------------CAGCTTCAACAACAGCATCAACAACACCAA---CAGCAA---------------------------CAGCA-------------------------------------GCAGCAACACCAA---CAACACCAACAGCAGCA------------------GCAACAGCAACACCACCAGCACCAGCAACAGCTT-----------------------------------CA---------TCATCATCATCAGC---------AGCA------G------CAACA------------------------------GCAGCAGCAACAACGTGTTGCAAGCAGTAGC-------------------------CTGCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACACCACCAGCACC..................................................................................................................................................................................................2111.001001000
..........................................................................................................................................................................................................................................................................................................................................ATCAACAACACCAA---CAGCAA---------------------------CAGCA-------------------------------------GC..........................................................................................................................................................................................................................................................................2711.001010000
...............................................................................................................................................................................................................................................................................................................................................CAACACCAA---CAGCAA---------------------------CAGCA-------------------------------------GC..........................................................................................................................................................................................................................................................................22200.051010000
..............................................................................................................................................................................................................................................................................................................................................ACAACACCAA---CAGCAA---------------------------CAGCA-------------------------------------GC..........................................................................................................................................................................................................................................................................23200.051010000
droAna3
-----------------CCCAGAACGGACCAA---CACCCGCATCCCAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCGCCCAGCCGTCCG---C-----------------------------------------GAATGCGCAG----------------------------CAGC-----------------------------------------------------------------------------------------AGTTGCAGCAGGC-----------------------------------T---------------CAGGGATCCCAGCAGCAACAGCAGCAGCCAGGATCGCA-------------------------------------ACAGCCACAGCCA---AGTTCGCAGCAGCA---------------------GCAG------------------CAGAATGTGGTG-----------------------------------CA------------------------------------------------------------------------------------G---CAACAG-----------------CCGC-------------------------ATCCGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCCAGGAT.....................................................................................................................................................................................................................................................................................................................1811.001010000
droBip1
-----------------CCCAGAACGGACCCA---CACCCGCATCCCAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCGCCCAGCCGTCCG---C-----------------------------------------GAATGCGCAG----------------------------CAGC-----------------------------------------------------------------------------------------AGCTGCAGCAGGC-----------------------------------T---------------CAGGGATCCCAGCAGCAACAGCAGCAGCCAGGATCGCA-------------------------------------ACAGCCACAGCCA---AGCTCGCAGCAGCA---------------------------------------GCAGCAGAATGTGGCG-----------------------------------CA---------GC------------------------------------------------------------------------------AACAG-----------------CCGC-------------------------ATCCATSizeHit CountTotal NormTotal
No Reads
droKik1
-----------------CCCAGAACGGACCCG---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCTCCCAACCGCCGG---C----------------G------AG---CGG-------GGCGAGTGCGCAG----------------------------CAGC-----------------------------------------------------------------------------------------AGCAG-----------------------------------------------------------CAGAATGCGCCGCAGCAGCAGCAGCCACCAAGTGCCCA-------------------------------------ACAACAACATCCG---GGCTCCCAGCAGCAGCA------------------GCAG------------------CAAAACGCAGTG-----------------------------------CA---------GCAACAGCACTTGC---------AGCA------G------CA---------------------------------G---CAGCAA-----------------GCGC-------------------------ATCCCCSizeHit CountTotal NormTotal
No Reads
droFic1
--------------GGCCGCAAAACGGACAAA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGAACG---C----------------G------AG---CGG-------TTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCAGCAGAATGCACAGCAGCAGCAGCAGCAACACAGCTCGCA-------------------------------------GCAACAACAG---------TCG---------CA------------------GCAACAGCA------GCCACCGCAAAATGTGTCG-----------------------------------CA---------GC---AACACATAC---------AACA------G------CAACAGCAGCA------------------------A---CAGCAA-----------------TCGC-------------------------ATCCTCSizeHit CountTotal NormTotal
No Reads
droEle1
--------------GGCCCCAGAACGGACCCATCGCGCCCGCATCACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------C------AG---CGG-------GTCGAGTGGGCAG----------------------------CAACAGCAGCAGCAGCAGCAGCAA----------------------------------------------------------------------------------------------------------------------CAGCAACAGCAA---CAGAAT---------------------------GCGCA-------------------------------------GCAGCAACATCAG---GTCGCGCAGCAGCAACAACAGCA---------GCCGCAACA---------GCAGCAGCAGAGTGTGGGG-----------------------------------CA------ACCGCAGCAGCACCTGC---------AGC------------------------A------------------------G---CAGCAA-----------------TCGC-------------------------ATCCTTSizeHit CountTotal NormTotal
No Reads
droRho1
--------------GGCCCCAGAACGGACCCA---CGCCCGCATCACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AG---TGG-------GTCGAGTGGGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAACAGCAGAAT---------------------------GCACA-------------------------------------GCAGCAACATCAG---GTATCGCAGCAGCAGCA------------------ACAGCAGC------CGCAGCAGCCGAATGTGGCG-----------------------------------CA---------ACAACAGCATTTGC---------AGCA------G------CAGCAGCAACA------------------------G---CAGCAA-----------------TCGC-------------------------ATCCTTSizeHit CountTotal NormTotal
No Reads
droBia1
--------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAGCGCCTGTGTC----------------G------AGTGGTGG-------GTCGAATGGGCAG----------------------------CAGC-----------------------------------------------------------------------------------------AACAGCAGCAG--------------------------------------CAGCAGCAGCAA---CAGAAT---------------------------GCCCA-------------------------------------GCAGCAACATGCG---AGTGCGCAGCAACAGCAACAGCAGCAGCAGACGTCGCA------------------------------G-----------------------------------CA---------GCAACAGCACCTGC---------AACA------G------CAGCAGCAACA------------------------A---CAGCAA-----------------TCGC-------------------------ATCCCCSizeHit CountTotal NormTotal
No Reads
droTak1
--------------GGCCCCAAAATGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCGTCGC----------------G------AG---TGG-------CTCGAGTGGGCAG----------------------------CAGC-----------------------------------------------------------------------------------------AGCAG-----------------------------------------------------CAA---CAGACG---------------------------TCGCA-------------------------------------ACAGCAACATGTTAGTAACGTG---CAACAACAACA---------GACGCCGCAAC-----------------------------------------------------------------A---------GCAGCAACATTTGC---------AGCA------G------CAACAGCAA------------------------------CCACAG-----------------TCGC-------------------------ATCCTTSizeHit CountTotal NormTotal
No Reads
droEug1
TA------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AA---TGG-------GTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAG---CAGAAT---------------------------GCTCA-------------------------------------GCAGCAACATCAG---AGCTCGCAACAGCAGCA------------------ACAACAGCAGCAAGCGCAGCAACAGAATGTGGCG-----------------------------------CA---------ACAACAGCATATGC---------AGCA------G------CAACAGC---A------------------------G---CAGCAA-----------------TCGC-------------------------ATCCTTSizeHit CountTotal NormTotal
No Reads
dm3
--------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGACCG---C----------------G------AG---CGG-------GTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAA---CAGAAT---------------------------GCCCA-------------------------------------GCAGCAGCATCAG---GGCTCGCAGCAGCAGCA------------------GCAACAGAATGTGGTGCAGCAGCAGAATGTGGCG-----------------------------------CA---------GCAGCAGCATATGC---------AGCA------G------CAGCAGCAACA------------------------G---CAGCAG-----------------TCGC-------------------------ATCCTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................CCCTCCCAAACGACCG---C----------------G------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------------G---CAGCAG-----------------TCGC-------------------------ATCCC.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
................................................ATCAGGTAATAATGGTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAGCAGCAACA------------------------G---CAGCAG-----------------TCGC-------------------------A.....2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCG-----------------------------------CA---------GCAGCAGCATATGA---------T.................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAA---CAGAAT---------------------------GC....................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------G------CAGCAGCAACA------------------------G---CAGCAG-----------------TC.................................2540.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCAGCAGCAGCA------------------GC.......................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACA------------------------G---CAGCAG-----------------TCG................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGC---------AGCA------G------CAGCAGCA.........................................................................................1950.2010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAA---CAGAA..................................................................................................................................................................................................................................................................................................................................................19110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------G------CAGCAGCAACA------------------------G---CAGCAG-----------------T..................................22110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAGCAGCAACA------------------------G---CAGCAG-----------------TC.................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................GCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAA---.......................................................................................................................................................................................................................................................................................................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACA------------------------G---CAGCAG-----------------TCG................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------AGCA------G------CAGCAGCAACA------------------------..............................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................CAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAA---CAGAA..................................................................................................................................................................................................................................................................................................................................................20100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------AGCA------G------CAGCAGCAACA------------------------G---CA........................................................21200.1020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------G------CAGCAGCAACA------------------------G---C.........................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAGCAGCAACA------------------------G---CAGCAG-----------------T..................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACA------------------------G---CAGCAG-----------------T..................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAGCAGCAACA------------------------G---CAGCA.....................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------G------CAGCAGCAACA------------------------G---CAGCAG-----------------...................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------G------CAGCAGCAACA------------------------G---CAGCA.....................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------AGCA------G------CAGCAGCAACA------------------------G---CAGCA.....................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---------AGCA------G------CAGCAGCAACA------------------------..............................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
--------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AG---CGG-------TTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAA---CAGAAT---------------------------GCCCA-------------------------------------GCAGCAGCATCAG---GGCTCGCAGCAGCAGCA------------------GCAACAGAATGTGGTGCAGCAGCAAAATGTGGCG-----------------------------------CA---------GCAGCAGCACATGC---------AGCA------G------CAACA------------------------------G---CAGCAG-----------------TCGC-------------------------ACCCCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------------GCAACAGAAT...............................................................................................................................................................................................................15170.06100000000010000000
droSec2
--------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AG---CGG-------TTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAA---CAGAAT---------------------------GCCCA-------------------------------------GCAGCAGCATCAG---GGCTCGCAGCAGCAGCA------------------GCAACAGAATGTGGTGCAGCAGCAAAATGTGGCG-----------------------------------CA---------GCAGCAGCACATGC---------AGCA------G------CAACA------------------------------G---CAGCAG-----------------TCGC-------------------------ATCCCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------G------CAACA------------------------------G---CAGCAG-----------------TCGC-------------------------A.....1960.1710010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA------------------GCAACAGA.................................................................................................................................................................................................................19200.0510001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---------AGCA------G------CAACA------------------------------G---CAGCA.....................................................19200.0510010
droYak3
--------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AG---CGG-------GTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAA---CAGAATGCACAGCAGCAGCA----------------------------------------------------------GCAGCATCAG---GGCTCGCAGCAGCA---------------------GCAACAGAATGTGGTGCAGCAGCAGAATGTGGCG-----------------------------------CA---------GCAGCAGCACATGC---------AGCA------G------CAGCAACAACA------------------------G---CAGCAG-----------------TCGC-------------------------ATCCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACATGC---------AGCA------G------CAGCA............................................................................................1930.33101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------AGCA------G------CAGCAACAACA------------------------G---CAGC......................................................23200.05100100000000
droEre2
--------------GGCCCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCG---C----------------G------AG---CGG-------TTCGAGTGCGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAGCAA---CAGAAT---------------------------GCCCA-------------------------------------GCAGCAGCATCAG---GCCTCGCAGCAGCAGCA------------------GCAACAGAATGTGGTGCAGCAGCAGAATGTAGCA-----------------------------------CA---------GCAGCAGCACATGC---------AGCA------G------CAGCAACAACA------------------------G---CAGCAA-----------------TCGC-------------------------ATCCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA------------------GCAACAGAA................................................................................................................................................................................................................19180.0610000100

Generated: 05/18/2015 at 04:37 AM