ID:

dwi_2446

 Coordinate:

scf2_1100000004902:2134744-2134894 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.8 -0.8 -0.4 -0.4

Flybase annnotation

exon [dwil_GLEANR_11853:1]; CDS [Dwil\GK11664-cds]; intron [Dwil\GK11664-in]

Repeatable elements

NameClassFamilyStrand
A-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGACCTAGTGGCGGAGGTGGTGGTGGTGGTGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCAGCCGCAGCTGCAATAGAAGAATAAATGCAGTGCAAAAGAAAAGAAAAAGGAAAAAAAGCACCAGCAGCAGCAGCAAAAAAGACAAAAGAAACAAAATCAAATAAAAACGGAAAGCAAAAGAGCAAAAAACACACATGCAAGAGCAAGAGGAAGAGTGTGAGTGAGTGTGTGTGTGTGTTTGGGGGGTC
**********************************************************************************************((........................................................................................))***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V119
head
.GACCTAGTGGCGGAGGTGGT...................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0
.........GGCGGAGGTGGTGGTGGTGGTGCCAG........................................................................................................................................................................................................................ 26 0 1 2.00 2 2 0 0
.........GGCGGAGGTGGTGGTGGTGGTGC........................................................................................................................................................................................................................... 23 0 2 1.50 3 3 0 0
.........GGCGGAGGTGGTGGTGGTGGTGCC.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0
.......GTGGCGGAGGTGGTGGTGGTGGT............................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0
......AGTGGCGGAGGTGGTGGTGGTGGTGC........................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0
.......................................................................................................................................................................................................................................GTGTGTGTGTTTGGGGGGTC 20 0 1 1.00 1 1 0 0
CGACCTAGTGGCGGAGGT......................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0
.....................................................................................................................................................................AAAAACGGAAAGCAAAAGAGC................................................................. 21 0 1 1.00 1 0 1 0
..............................................................................................GCAAAAGAAAAGAAAAAGGAAA....................................................................................................................................... 22 0 1 1.00 1 0 1 0
...................................................................................ATAAATGCAGTGCAAAAG...................................................................................................................................................... 18 0 1 1.00 1 0 1 0
..........GCGGAGGTGGTGGTGGTGGTGCC.......................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0
.............GAGGTGGTGGTGGTGGCGCCAGCGGC.................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0
.....................................................................................................................................................................................................................AAGAGTGTGAGTGAGTGTGTGTG............... 23 0 1 1.00 1 0 1 0
.......................................................................................ACGCAGTGCAAAAGAAAGGA................................................................................................................................................ 20 2 2 0.50 1 1 0 0
.........GGCGGAGGTGGTGGTGGTGGTG............................................................................................................................................................................................................................ 22 0 4 0.25 1 1 0 0
....................................................ATGAAGAAGCAGCCGCAG..................................................................................................................................................................................... 18 1 5 0.20 1 1 0 0
....................................................ATGAAGAAGCAGCCGCAGCCGC................................................................................................................................................................................. 22 2 6 0.17 1 0 0 1
.................................AGCGGCGTTATTTCAAGGTA...................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0
.....................GGTTGTCGCGCCAGCGGC.................................................................................................................................................................................................................... 18 3 20 0.10 2 2 0 0
.........GGCGGAGGGGGTGGTGGTGGCGC........................................................................................................................................................................................................................... 23 2 10 0.10 1 1 0 0
.............................................TCAAGGTAGGAAGAAGAA............................................................................................................................................................................................ 18 2 10 0.10 1 0 1 0
.........GGCGGAGGGGGTGGTGGTGG.............................................................................................................................................................................................................................. 20 1 18 0.06 1 1 0 0
..............AGTTGGTGGTGGTGGTACC.......................................................................................................................................................................................................................... 19 2 19 0.05 1 1 0 0
.........GGCGGAGGGGGTGGTGGT................................................................................................................................................................................................................................ 18 1 20 0.05 1 1 0 0
.........................................................................................................................................................................................................................GTGTGAGTGAGTGTGTGT................ 18 0 20 0.05 1 1 0 0
......AGTAGCGGACGTGGTGATG.................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0
............GGAGGTGGTGGTGGTGGT............................................................................................................................................................................................................................. 18 0 20 0.05 1 1 0 0

Anti-sense strand reads

GCTGGATCACCGCCTCCACCACCACCACCACGGTCGCCGCCGTAGAGTTCCATTCTTCTTCGTCGGCGTCGACGTTATCTTCTTATTTACGTCACGTTTTCTTTTCTTTTTCCTTTTTTTCGTGGTCGTCGTCGTCGTTTTTTCTGTTTTCTTTGTTTTAGTTTATTTTTGCCTTTCGTTTTCTCGTTTTTTGTGTGTACGTTCTCGTTCTCCTTCTCACACTCACTCACACACACACACAAACCCCCCAG
*****************************************************************((........................................................................................))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020
head
 M045
female body
 V118
embryo
 V117
male body
...................................GCCGACGTAGAGTTTCATTCC................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0
..........................ACCACAGGCGCCGCCCTA............................................................................................................................................................................................................... 18 3 20 0.40 8 0 8 0 0
..........................ACCACTGTCGCCGCCCTA............................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 1 0
...............................................................................................................................GTGGTCGTCGTTTTTACTGTTCT..................................................................................................... 23 3 8 0.25 2 0 2 0 0
......................................................................................................................TTCGCGGTCGCCGTCGTCGTTTT.............................................................................................................. 23 2 4 0.25 1 0 0 1 0
.................................................CCATTCTTGTTCTGCGGCGT...................................................................................................................................................................................... 20 3 9 0.22 2 0 0 0 2
....................................CCGACGTAGAGTTTCATTCC................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0
...............................................................................................................................GTGGTCGTCGTTTTTACTGT........................................................................................................ 20 2 18 0.06 1 0 1 0 0
............CCTCCACCACCACCACCA............................................................................................................................................................................................................................. 18 0 20 0.05 1 0 1 0 0
....................ACCTGCACCACGGTCGCTG.................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004902:2134694-2134944 + dwi_2446 CGACCTAGTGGCGGAGG---TGGTGGT---------------------------------------------------------------GGTGGTGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCAGCC-----------------------------------------------------GCAGCTGCAATAGAA------G----AATAA-ATGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAAAGAAAAGAAAAAGGAAAAAAAGCACCAGCAGCAGCAGCAAAAAAGACAAAAGAAACAAAATCAAATAAAAACG-------GAAAG--------------------CA-----AAAGAG-------------------CAAAAAACACACATGCAAGA--------------------------------------------GCAAGAGGAAGAGTGTGAGTGAGTGTGTG---TGTGTGTTTGGGGGGTC----------------------------------------
droVir3 scaffold_13049:18816679-18816844 - ACAAATACAACAAAAAT---------A---------------------------------------------------------------------TAC---------------AAAAAACCAAAAACA-------------------------------------------------------AAAACATGTGTTTGTA------G----AA-GAAAAACGAAAAA------AAA-------------------------------------------------------------------------------------------AAAACCA-AA-C--CAAAACCAAAATATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAACAAGCCAAT------------------------------------------------------------------------GACAACAGTGGGTGTGCGAGTGTGTGTGCGTGTGTG---TGTGTGTGTGTGAGGG----------------------------------------G
droMoj3 scaffold_4274:5123-5288 - TCAGGGTATAAAAAA------------------------------------------------------------------------------TGAAAAAGA--AAATAAATGAAAAGAAAAAAAAAAA--------------------------------------------------------AAAAATAAATAAATA------A----AAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAAAAGAAATGAATGAAAAGAAAAAAAATAAATAAAAAAA-------AAAAA--------------------TG-----AAAAAT-------------------AAATAAATGAAAAGGAAAAC--------------------------------------------AAAAAAA-----------------------------------------------------------------------AACAAGTAAGA
droGri2 scaffold_14906:4349332-4349519 + CGACCTACTGGCGGAGG---T---GGC---------------------------------------------------------------GGCGCTGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCAGCA------GCAGTTTGCTTGCTGTGCTGCTGCAGTTTAAAAAGTACG-----------------------------A----AGCGA-ATGCAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAACGCACCAAGAAAAACA-------------CGGGTAAATT--------------------------------------------GTT-------------------CGCTGTATAAAATAAAATAC--------------------------------------------TACAAAT-----------------------------------------------------------------------ACAAAGTAAAA
dp5 2:9832716-9832918 - CGACCTAGTGGAGGAGG---TGGCGGT---------------------------------------------------------------GGCGGAGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCAGTGGAA------A----AGCGA-ATGCAAAAAAA--GACAAAAGCGACAGACACAAGGAAAAA----------------------------------------------------------------------AGAAACG-AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAGCGAAAGAAA----------------AAAATAAAACACACACACAAGTGTAAT---------------------------------------------------------------------------------------------CGGTCGTGTGTTGTGTGGGGCTGGTTTGCT----------------------------------------
droPer2 scaffold_0:10652151-10652354 + CGACCTAGTGGAGGAGG---TGGCGGT---------------------------------------------------------------GGCGGAGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCAGTGGAA------A----AGCGA-ATGCAAAAAAA--GACAAAAGCGACAGACACAAGGAAAAA----------------------------------------------------------------------AGAAACG-AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAGCGAA---------------AAAAAAAAAATAAAACACACACACAAGTGTAAT---------------------------------------------------------------------------------------------CGGTCGTGTGTTGTGTGGGGCTGGTTTGCT----------------------------------------
droAna3 scaffold_13340:12819113-12819451 + dan_3056 CGACCTAGCGGCGGTGG---T---GGTGGCGGCAGCGGTGGAGGTGGCAGTGGCGGCGGCGGTGGAGGAGGAGGAGGAGGTGGCGGCGGCGGTGGAGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCATTCGTA------G----TCCGAAATGCGAAAATAAT---------------------------GTGATGAGATGGGATGGGGAGTGGTGATGGTGATGGG---------------------GTGGCATGGGGG---GCCT-CTCGAAAAGAGGGAAAACATACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-------C-------------------------ATACTCACACACAACTGCACC-------------------AGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGCAGCAGCAGCAGCCGCGGC---A-------------------------------------GGCTGGTTTGCT---------------------TTGCTTTT----TTGCTTT
droBip1 scf7180000396691:1702429-1702741 + CGACCTAGCGGCGGTGG---T---GGC---GGCAGCGGTGGAGGTGGCAGCGTCG---------------GAGGAGGAGGTGGCGGTGGCGGCGGAGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA-------------------------------------------------------CCCAGCTGCATTCGCA------G----TCCGAAATGCGAAAATAAT---------------------------G-------------------------------AGGGGATGGGTGGGGAGGTGCAGGAGGTGGCACGGGGG----CCTAGGCGAAAAGAGGAAAAACATACACACACACACACACACCCATACTCGCACACAAGTGCAGTAGCAGCAG--CGGCAGCAGCAGCAGCAGCAGCAGCAGTAG------------------------------------------------------------------TGGCAGTAG---------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCCGCGGC---A-------------------------------------G--------G----------------------------------------CT
droKik1 scf7180000302639:1451755-1452005 - AGACCCAGCGGTGGCGG---A---GGCGC------CGTTGGCGCTGGCGCTGGCG---------------GAGGAGGTGGTGGCGGCGGAGGCGCTCCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAACTGCAGCAGCAGTGGCGAATAAAG-GAAAGAGTCG------GAGAAAGGCGAT---------------G-------------------------------ACGGG---------------------CCGGGCGGGAGG---AGCC-ATCG--AAGAGGGAAAACACACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCACACACCTATGCAGTGCGAATGTGGCG--------------------------------------------------------------------------------------GTG---TGTGTGGGGCTGGTTTGC--------------------------------------GTT
droFic1 scf7180000453851:1782758-1782881 - CAGCCGC--AGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAGCAGCAGCAGCAGGAGATCCAGTAGTGGA---AAGCAGCCGAAAAGGCAAAAGGCAAAAAGCTTTAGCAGCCGCAGCAAAA--------------------------------------AAAAA----------------TAATAAAC-------------------------------------------------------------------------------------AACGC-----------------------------------------------------------------------------------------CA
droEle1 scf7180000491080:998333-998416 + CGACCCACTGGCGGT---------GGC---------------------------------------------------------------GGAGGTGCCAGCGGCGGCATCGCCAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCA------CTGGCGAAAAA--------------------------GAGACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779250:101533-101616 - CGACCCACTGGCGGT---------GGC---------------------------------------------------------------GGAGGTGCCAGCGGCGGCATCGCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCA------CTGGCGAAAAA--------------------------GAGACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302136:826619-826695 + CGACCCACTGGCGGTGGTGGTGGCGGC---------------------------------------------------------------GGAGGAGCTGGCGGCGGCATCGCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415769:1935558-1935649 - CGACCCACTGGCGGTGG---T---GGC---------------------------------------------------------------GGAGGAGCTAGCGGCGGCATCGCCAGGTAAGAAGAAGAAGCA-----------------------------------------------------CCAGCTGCA------CTGGCGAAAAA--------------------------GATACAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG
droEug1 scf7180000409281:117850-117972 - CGACCCACTGGCGGTG---------------------------------------------------------------------------GAGGTGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCA------CTGGCGAAAAA--------------------------GAGACAG------------------------------------------------------------------------------GGGCG----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGCAAAAAGGGTAAAGGGG-----CTGTAACACTGGCA
dm3 chr3L:22803055-22803205 + AATAAAAAAAAAAAAAA---------A---------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAGTT------------------------------------------------------------------------------AAGAA-ATACAAAAAAA--AACTATAAAAAAAATAATATAAAAAAA----------------------------------------------------------------------TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATTATAAGAAATAAG---------------------------A-----AATAAG-------------------AAATATAAA--------------------------------------------------------AAAATA-----------------------------------------------------------------------AAAATATAAGT
droSim2 3r:9993898-9994148 - CGACCCACTGGCGGC------------------------------------------------------------------------------GGTGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCAGCTTGACCAG----------------------------------CACCACCAGCACCCAGCTGCA------CTGGCAAAAAC-------------CAGG--GGCGATAGC-ACAG------------------------------------------------------------------------------GGGCG----T--------------------CATT------------------------------------------------TG-------------------------------------AGCAGGGTGCTGCAGGGGAGCCGAGCACG---GAGAGGCACCAGAGTCAGCAGCAGAG--------------------------------------CGCCATGCCACACAACAAAGGGGGGCACACACGCACACCACTGCATT------------------------------------------------------------------------------------------------------------TGGGGCTGGTTTGCT---------------------TTTGCCTT----TTGC---
droSec2 scaffold_0:10713356-10713437 - CGACCCACTGGCGGC------------------------------------------------------------------------------GGTGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCAGCTTGACCAG-------------------------------------------CACCCAGCTGCA------CTGGCAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:15196916-15196978 - CGACCCACTGGCGGT------------------------------------------------------------------------------GGTGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCAGCT--------------------------------------------------------TCACCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droEre2 scaffold_4784:2814802-2814918 - GATAGTTCCAGTGCCAG---------G---------------------------------------------------------------------ACC------------ACTGCATCATCAACAGCAACA-----------------------------------------------------GGTGCTGCAGCAGCA------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAAC---------------------------------------------------------AGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAA-----------------------------------------------------C-------------------------------------------------------------------------------------AACAG-----------------------------------------------------------------------------------------CA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CGACCTAGTGGCGGAGG---TGGTGGT---------------------------------------------------------------GGTGGTGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCAGCC-----------------------------------------------------GCAGCTGCAATAGAA------G----AATAA-ATGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAAAGAAAAGAAAAAGGAAAAAAAGCACCAGCAGCAGCAGCAAAAAAGACAAAAGAAACAAAATCAAATAAAAACG-------GAAAG--------------------CA-----AAAGAG-------------------CAAAAAACACACATGCAAGA--------------------------------------------GCAAGAGGAAGAGTGTGAGTGAGTGTGTG---TGTGTGTTTGGGGGGTC----------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.GACCTAGTGGCGGAGG---TGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
.........GGCGGAGG---TGGTGGT---------------------------------------------------------------GGTGGTGCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000
.........GGCGGAGG---TGGTGGT---------------------------------------------------------------GGTGGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.50303000
.........GGCGGAGG---TGGTGGT---------------------------------------------------------------GGTGGTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
.......GTGGCGGAGG---TGGTGGT---------------------------------------------------------------GGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
......AGTGGCGGAGG---TGGTGGT---------------------------------------------------------------GGTGGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG---TGTGTGTTTGGGGGGTC----------------------------------------2011.00101000
CGACCTAGTGGCGGAGG---T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACG-------GAAAG--------------------CA-----AAAGAG-------------------C........................................................................................................................................................2111.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGAAAAGAAAAAGGAAA.................................................................................................................................................................................................................................................................................2211.00100010
....................................................................................................................................................................................................................ATAA-ATGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAAAAG................................................................................................................................................................................................................................................................................................1811.00100010
..........GCGGAGG---TGGTGGT---------------------------------------------------------------GGTGGTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTGTGAGTGAGTGTGTG---TG.......................................................2311.00100010
.........GGCGGAGG---TGGTGGT---------------------------------------------------------------GGTGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.25101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAGTGAGTGTGTG---T........................................................18200.05101000
............GGAGG---TGGTGGT---------------------------------------------------------------GGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000
droVir3
ACAAATACAACAAAAAT---------A---------------------------------------------------------------------TAC---------------AAAAAACCAAAAACA-------------------------------------------------------AAAACATGTGTTTGTA------G----AA-GAAAAACGAAAAA------AAA-------------------------------------------------------------------------------------------AAAACCA-AA-C--CAAAACCAAAATATAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAACAAGCCAAT------------------------------------------------------------------------GACAACAGTGGGTGTGCGAGTGTGTGTGCGTGTGTG---TGTGTGTGTGTGAGGG----------------------------------------GSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................AAACGAAAAA------AAA-------------------------------------------------------------------------------------------AAAACCA-..............................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGCGTGTGTG---TGT......................................................19200.051000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGTGTGTG---TGTGTGTG.................................................19200.051000000000000000000000100000000000000000000000000000000000000000
droMoj3
TCAGGGTATAAAAAA------------------------------------------------------------------------------TGAAAAAGA--AAATAAATGAAAAGAAAAAAAAAAA--------------------------------------------------------AAAAATAAATAAATA------A----AAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAAAAAGAAATGAATGAAAAGAAAAAAAATAAATAAAAAAA-------AAAAA--------------------TG-----AAAAAT-------------------AAATAAATGAAAAGGAAAAC--------------------------------------------AAAAAAA-----------------------------------------------------------------------AACAAGTAAGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CGACCTACTGGCGGAGG---T---GGC---------------------------------------------------------------GGCGCTGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCAGCA------GCAGTTTGCTTGCTGTGCTGCTGCAGTTTAAAAAGTACG-----------------------------A----AGCGA-ATGCAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAACGCACCAAGAAAAACA-------------CGGGTAAATT--------------------------------------------GTT-------------------CGCTGTATAAAATAAAATAC--------------------------------------------TACAAAT-----------------------------------------------------------------------ACAAAGTAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
CGACCTAGTGGAGGAGG---TGGCGGT---------------------------------------------------------------GGCGGAGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCAGTGGAA------A----AGCGA-ATGCAAAAAAA--GACAAAAGCGACAGACACAAGGAAAAA----------------------------------------------------------------------AGAAACG-AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAGCGAAAGAAA----------------AAAATAAAACACACACACAAGTGTAAT---------------------------------------------------------------------------------------------CGGTCGTGTGTTGTGTGGGGCTGGTTTGCT----------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAT---------------------------------------------------------------------------------------------CGGTCGTGTGTTGTT.......................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------------------CGGTCGTGTGTTGTGTGGGG..................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGTGTTGTGTGGGGCTT...............................................2011.0010100000000
......................GCGGT---------------------------------------------------------------GGCGGAGCCAGCGGCGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......GTGGAGGAGG---TGGCGGT---------------------------------------------------------------GGCGGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
CGACCTAGTGGAGGAGG---TGGCGGT---------------------------------------------------------------GGCGGAGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCAGTGGAA------A----AGCGA-ATGCAAAAAAA--GACAAAAGCGACAGACACAAGGAAAAA----------------------------------------------------------------------AGAAACG-AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAGCGAA---------------AAAAAAAAAATAAAACACACACACAAGTGTAAT---------------------------------------------------------------------------------------------CGGTCGTGTGTTGTGTGGGGCTGGTTTGCT----------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......GTGGAGGAGG---TGGCGGT---------------------------------------------------------------GGCGGAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000002
.......GTGGAGGAGG---TGGCGGT---------------------------------------------------------------GG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.....................GGCGGT---------------------------------------------------------------GGCGGAGCCAGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droAna3
CGACCTAGCGGCGGTGG---T---GGTGGCGGCAGCGGTGGAGGTGGCAGTGGCGGCGGCGGTGGAGGAGGAGGAGGAGGTGGCGGCGGCGGTGGAGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCATTCGTA------G----TCCGAAATGCGAAAATAAT---------------------------GTGATGAGATGGGATGGGGAGTGGTGATGGTGATGGG---------------------GTGGCATGGGGG---GCCT-CTCGAAAAGAGGGAAAACATACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-------C-------------------------ATACTCACACACAACTGCACC-------------------AGCAGCAGCAGCAGCAGCAGCAGCAGTAGTAGCAGCAGCAGCAGCCGCGGC---A-------------------------------------GGCTGGTTTGCT---------------------TTGCTTTT----TTGCTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................GGTGGAGGAGGAGGAGGAGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2425.5011000038
.................................................GTGGCGGCGGCGGTGGAGGAGGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003000003
..........................................................GCGGTGGAGGAGGAGGAGGAGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003000003
....................................................GCGGCGGCGGTGGAGGAGGAGGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000011
....................................................................................GGCGGCGGTGGAGCCAGCGGCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................................................GCGGTGGAGGAGGAGGAGGAGGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.....................................................................................................................................................................................................................................................................TGAGATGGGATGGGGAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................GGCGGTGGAGGAGGAGGAGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
........................................................................GGAGGAGGTGGCGGCGGCGGTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
............................................................GGTGGAGGAGGAGGAGGAGGTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...........................................................CGGTGGAGGAGGAGGAGGAGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
..................................................TGGCGGCGGCGGTGGAGGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
................................................AGTGGCGGCGGCGGTGGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................GTGGAGGAGGAGGAGGAGGTGGCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
......................................................................GAGGAGGAGGTGGCGGCGGCGGTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..............................GGCAGCGGTGGAGGTGGCAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.......................................................................................GGCGGTGGAGCCAGCGGCGGCATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
........................GGTGGCGGCAGCGGTGGAGGTGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.............................................................GTGGAGGAGGAGGAGGAGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.672000002
..........................................................GCGGTGGAGGAGGAGGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.603000003
............................................................................GAGGTGGCGGCGGCGGTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000001
......................................................................GAGGAGGAGGTGGCGGCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000001
..........................................GGTGGCAGTGGCGGCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000001
.....................................................................GGAGGAGGAGGTGGCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.444000013
..............................................................TGGAGGAGGAGGAGGAGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.331100000
.......................................................................AGGAGGAGGTGGCGGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.331000001
............................................................GGTGGAGGAGGAGGAGGAGGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.331000001
.........GGCGGTGG---T---GGTGGCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.274100003
........................................................................GGAGGAGGTGGCGGCGGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.251100000
..........................................................GCGGTGGAGGAGGAGGAGGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.201000001
......................................................GGCGGCGGTGGAGGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171100000
........CGGCGGTGG---T---GGTGGCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111000001
..................................................................GGAGGAGGAGGAGGTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111100000
............................................................GGTGGAGGAGGAGGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCAGCAG......................................................................................................................24200.102200000
...............................................................GGAGGAGGAGGAGGAGGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.081100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCAGTA....................................................................................................................24170.061100000
...........................GGCGGCAGCGGTGGAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18190.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCA.......................................................................................................................20200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACC-------------------AGCAGCAGCAGCAGCAGCA.............................................................................................................................23200.051000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------AGCAGCAGCAGCAGCAGCAGCAGCA.......................................................................................................................26200.051100000
droBip1
CGACCTAGCGGCGGTGG---T---GGC---GGCAGCGGTGGAGGTGGCAGCGTCG---------------GAGGAGGAGGTGGCGGTGGCGGCGGAGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA-------------------------------------------------------CCCAGCTGCATTCGCA------G----TCCGAAATGCGAAAATAAT---------------------------G-------------------------------AGGGGATGGGTGGGGAGGTGCAGGAGGTGGCACGGGGG----CCTAGGCGAAAAGAGGAAAAACATACACACACACACACACACCCATACTCGCACACAAGTGCAGTAGCAGCAG--CGGCAGCAGCAGCAGCAGCAGCAGCAGTAG------------------------------------------------------------------TGGCAGTAG---------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCCGCGGC---A-------------------------------------G--------G----------------------------------------CTSizeHit CountTotal NormTotal
No Reads
droKik1
AGACCCAGCGGTGGCGG---A---GGCGC------CGTTGGCGCTGGCGCTGGCG---------------GAGGAGGTGGTGGCGGCGGAGGCGCTCCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAACTGCAGCAGCAGTGGCGAATAAAG-GAAAGAGTCG------GAGAAAGGCGAT---------------G-------------------------------ACGGG---------------------CCGGGCGGGAGG---AGCC-ATCG--AAGAGGGAAAACACACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCACACACCTATGCAGTGCGAATGTGGCG--------------------------------------------------------------------------------------GTG---TGTGTGGGGCTGGTTTGC--------------------------------------GTTSizeHit CountTotal NormTotal
No Reads
droFic1
CAGCCGC--AGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAGCAGCAGCAGCAGCAGGAGATCCAGTAGTGGA---AAGCAGCCGAAAAGGCAAAAGGCAAAAAGCTTTAGCAGCCGCAGCAAAA--------------------------------------AAAAA----------------TAATAAAC-------------------------------------------------------------------------------------AACGC-----------------------------------------------------------------------------------------CASizeHit CountTotal NormTotal
No Reads
droEle1
CGACCCACTGGCGGT---------GGC---------------------------------------------------------------GGAGGTGCCAGCGGCGGCATCGCCAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCA------CTGGCGAAAAA--------------------------GAGACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGACCCACTGGCGGT---------GGC---------------------------------------------------------------GGAGGTGCCAGCGGCGGCATCGCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCA------CTGGCGAAAAA--------------------------GAGACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGACCCACTGGCGGTGGTGGTGGCGGC---------------------------------------------------------------GGAGGAGCTGGCGGCGGCATCGCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGACCCACTGGCGGTGG---T---GGC---------------------------------------------------------------GGAGGAGCTAGCGGCGGCATCGCCAGGTAAGAAGAAGAAGCA-----------------------------------------------------CCAGCTGCA------CTGGCGAAAAA--------------------------GATACAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGSizeHit CountTotal NormTotal
No Reads
droEug1
CGACCCACTGGCGGTG---------------------------------------------------------------------------GAGGTGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCA--------------------------------------------------------CCAGCTGCA------CTGGCGAAAAA--------------------------GAGACAG------------------------------------------------------------------------------GGGCG----T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGCAAAAAGGGTAAAGGGG-----CTGTAACACTGGCASizeHit CountTotal NormTotal
No Reads
dm3
AATAAAAAAAAAAAAAA---------A---------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAGTT------------------------------------------------------------------------------AAGAA-ATACAAAAAAA--AACTATAAAAAAAATAATATAAAAAAA----------------------------------------------------------------------TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATTATAAGAAATAAG---------------------------A-----AATAAG-------------------AAATATAAA--------------------------------------------------------AAAATA-----------------------------------------------------------------------AAAATATAAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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Head
No Reads
droYak3
CGACCCACTGGCGGT------------------------------------------------------------------------------GGTGCCAGCGGCGGCATCTCAAGGTAAGAAGAAGCAGCT--------------------------------------------------------TCACCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GATAGTTCCAGTGCCAG---------G---------------------------------------------------------------------ACC------------ACTGCATCATCAACAGCAACA-----------------------------------------------------GGTGCTGCAGCAGCA------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAAC---------------------------------------------------------AGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAA-----------------------------------------------------C-------------------------------------------------------------------------------------AACAG-----------------------------------------------------------------------------------------CASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................TGCTGCAGCAGCA------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAAC---------------------------------------------------------AGCA.............................................................................................................................................................................................................................................................................3111.0010000010
.......................................................................................................................................................................................................A------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAAC---------------------------------------------------------AGCAGCAGCAGCA....................................................................................................................................................................................................................................................................28130.771000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAGCA............................................................................................................................................................................................................................................20200.1533000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAAC---------------------------------------------------------AGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................27100.1010001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAAC---------------------------------------------------------AGCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................25200.0510000010
.....................................................................................................................................................................................................GCA------G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAAC---------------------------------------------------------AGCAGCA..........................................................................................................................................................................................................................................................................24200.0511000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAC---------------------------------------------------------AGCAGCAGCA.......................................................................................................................................................................................................................................................................20200.0510100000

Generated: 05/18/2015 at 04:30 AM